Citrus Sinensis ID: 006548
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 641 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZUU9 | 730 | ABC transporter G family | yes | no | 1.0 | 0.878 | 0.839 | 0.0 | |
| Q8RXN0 | 703 | ABC transporter G family | no | no | 0.833 | 0.759 | 0.386 | 1e-109 | |
| Q8RWI9 | 691 | ABC transporter G family | no | no | 0.843 | 0.782 | 0.368 | 1e-103 | |
| Q9C8K2 | 687 | ABC transporter G family | no | no | 0.859 | 0.802 | 0.361 | 4e-98 | |
| Q9C8J8 | 678 | ABC transporter G family | no | no | 0.840 | 0.794 | 0.342 | 2e-86 | |
| P45843 | 666 | Protein scarlet OS=Drosop | yes | no | 0.842 | 0.810 | 0.275 | 9e-48 | |
| Q9H222 | 651 | ATP-binding cassette sub- | yes | no | 0.772 | 0.760 | 0.287 | 3e-47 | |
| Q80W57 | 657 | ATP-binding cassette sub- | yes | no | 0.848 | 0.828 | 0.269 | 3e-45 | |
| Q4GZT4 | 655 | ATP-binding cassette sub- | no | no | 0.803 | 0.786 | 0.262 | 3e-45 | |
| Q8MIB3 | 656 | ATP-binding cassette sub- | yes | no | 0.850 | 0.830 | 0.270 | 9e-45 |
| >sp|Q9ZUU9|AB3G_ARATH ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1108 bits (2866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/649 (83%), Positives = 596/649 (91%), Gaps = 8/649 (1%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEIQSQSD YRSSSSSASSP SRVPSS+FFY+RKPGSLRQPISFEDSPEWEDT DV++R
Sbjct: 1 MEEIQSQSDLYRSSSSSASSPTSRVPSSHFFYVRKPGSLRQPISFEDSPEWEDTPDVDLR 60
Query: 60 VEE---GGDSIN-AATTPASPSLSKLNSGSLPSPPLPEGAA---VARKIAGASVVWKDLT 112
+E+ GGDSIN A TTP SPSLSK+NSGS+ SPP+PEG A V RKIAGAS+ WKDLT
Sbjct: 61 MEDEAGGGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGTGVVRKIAGASIAWKDLT 120
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172
VT+KGKR+YSDKVVKSSNGYA PGTMTVIMGPAKSGKSTLLRA+AGRLP SA+MYGEVFV
Sbjct: 121 VTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSAKMYGEVFV 180
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
NG+KS MPYGSYGFVERET LIGSLTVRE+LYYSALLQLPGF Q+++VVEDAI AMSLS
Sbjct: 181 NGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKRSVVEDAIQAMSLS 240
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
DYANKLIGGHCYMKGL GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKK
Sbjct: 241 DYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKK 300
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 352
LAS GCTL+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP
Sbjct: 301 LASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 360
Query: 353 SDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412
SDHFLRAINTDFDRIIAMCK+WQDD+GDFS+VNMDTAVAIRTLEATY+SSADA +VE MI
Sbjct: 361 SDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEATYKSSADADSVEAMI 420
Query: 413 LRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFS 472
++LTE+EG LKSKGKA +ATRVAVLTWRSLL+MSREWKYYWLRLIL MILTL +GT++S
Sbjct: 421 IKLTEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYS 480
Query: 473 GLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQL 532
GLGHSLSSV TRVAA+FVFVSF SLL IAG+P+L+KEIK Y SE SN HSGA VFLLGQ
Sbjct: 481 GLGHSLSSVATRVAAVFVFVSFASLLGIAGIPSLLKEIKIYRSEASNQHSGAFVFLLGQF 540
Query: 533 LSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVY 592
L SIPFLFL+SISSSLVFYF+VGLRD+FSLLMYFVLNFFMCLLVNEGLML +A IW+DVY
Sbjct: 541 LGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCLLVNEGLMLFIACIWRDVY 600
Query: 593 WSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKACI 641
WS LTLISVHV+MML+AG+FRIR ALP PVWTYP +Y++FHTYSI+ +
Sbjct: 601 WSTLTLISVHVIMMLAAGHFRIRTALPKPVWTYPFAYISFHTYSIEGLL 649
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RXN0|AB11G_ARATH ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 210/543 (38%), Positives = 341/543 (62%), Gaps = 9/543 (1%)
Query: 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163
A + W+DLTV + + V++ GYA PG++T +MGP+ SGKST+L A+A RL +
Sbjct: 48 ARLTWQDLTVMVTMGDGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAAN 107
Query: 164 ARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPG--FFCQRKNV 221
A + G V +NG K+++ +G+ +V ++ LIG+LTVRE ++YSA ++LP +++ +
Sbjct: 108 AFLSGTVLLNGRKTKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRAL 167
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
VE I M L D A+ +IG + +++G+ GE+RRV IA E++MRP +LF+DEP LDS
Sbjct: 168 VERTIIEMGLQDCADTVIG-NWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSA 226
Query: 282 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341
SA + TL+ L+ G T++ +I+Q S+EVF LFDR+ LLS G T++FG+ + F+
Sbjct: 227 SAFFVTQTLRALSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFAQ 286
Query: 342 AGFPCPIMQSPSDHFLRAINTDFDRIIAMCK---SWQDDHGDFSSVNMDTAVAIRTLEAT 398
AGFPCP +++PSDHFLR IN+DFD++ A K + + D + TA AIR L
Sbjct: 287 AGFPCPALRNPSDHFLRCINSDFDKVRATLKGSMKLRFEASDDPLEKITTAEAIRLLVDY 346
Query: 399 YQSSADAAAVETMILRLTEKEGPFLKSKG-KASSATRVAVLTWRSLLIMSREWKYYWLRL 457
Y +S + + +++ +G L S G +AS + LT RS + MSR++ YYWLRL
Sbjct: 347 YHTSDYYYTAKAKVEEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRL 406
Query: 458 ILCMILTLCVGTVFSGLGHSLSSVVTRVA-AIFVFVSFNSLLNIAGVPALMKEIKTYASE 516
++ +++T+C+GT++ +G S S+++ R + A FVF F + ++I G P+ ++++K + E
Sbjct: 407 LIYILVTVCIGTIYLNVGTSYSAILARGSCASFVF-GFVTFMSIGGFPSFVEDMKVFQRE 465
Query: 517 ESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLV 576
N H G F++ LS+ PFL +I+ S + YF+VGL F+ ++FVL + + V
Sbjct: 466 RLNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYASVTV 525
Query: 577 NEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYS 636
E LM+ +ASI + I+ + + ML +G+FR+ N +P P W YP+SY++FH ++
Sbjct: 526 VESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFFRLPNDIPKPFWRYPMSYISFHFWA 585
Query: 637 IKA 639
++
Sbjct: 586 LQG 588
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Required for the cuticle and pollen coat development by controlling cutin and maybe wax transport to the extracellular matrix. Involved in developmental plasticity and stress responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWI9|AB15G_ARATH ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 375 bits (962), Expect = e-103, Method: Compositional matrix adjust.
Identities = 207/562 (36%), Positives = 342/562 (60%), Gaps = 21/562 (3%)
Query: 91 LPEGAAVARKIAGASVVWKDLTVTIKGKRRYSD----KVVKSSNGYALPGTMTVIMGPAK 146
LP ++R GA + W+DLTV I +SD ++++ NGYA PG + IMGP+
Sbjct: 13 LPSKLEMSR---GAYLAWEDLTVVIPN---FSDGPTRRLLQRLNGYAEPGRIMAIMGPSG 66
Query: 147 SGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206
SGKSTLL ++AGRL + M G + +NG K+ + YG +V +E L+G+LTVRE + YS
Sbjct: 67 SGKSTLLDSLAGRLARNVVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTVRETITYS 126
Query: 207 ALLQLPGFFCQRK--NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264
A L+LP + + ++VE I + L D ++++IG + + +G+ GER+RV IA E++
Sbjct: 127 AHLRLPSDMSKEEVSDIVEGTIMELGLQDCSDRVIG-NWHARGVSGGERKRVSIALEILT 185
Query: 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
RP +LF+DEP LDS SA ++ L+ +A G T++ +++Q S+EVF LFD + LLS+G
Sbjct: 186 RPQILFLDEPTSGLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSG 245
Query: 325 NTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSS- 383
+++FGE + ++ F+ +GFPCP ++PSDHFLR IN+DFD + A K Q ++
Sbjct: 246 ESVYFGEAKSAVEFFAESGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQETPATS 305
Query: 384 ---VNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSAT---RVAV 437
+N+ T+V L Y+ S A + ++ I L+ EG ++ + K S AT ++
Sbjct: 306 DPLMNLATSVIKARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIR-KGSEATWWKQLRT 364
Query: 438 LTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSL 497
LT RS + M R+ YYW R+I +++++ VGT+F +G+S +S++ RV+ F +
Sbjct: 365 LTARSFINMCRDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTF 424
Query: 498 LNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLR 557
++I G P+ ++E+K + E + + G V++L +SS PFL IS+ + + Y LV R
Sbjct: 425 MSIGGFPSFLEEMKVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFR 484
Query: 558 DEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNA 617
FS +F LN F + V E LM+VVAS+ + ++T + ++M+++G+FR+
Sbjct: 485 PGFSHYAFFCLNIFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLPD 544
Query: 618 LPGPVWTYPISYVAFHTYSIKA 639
LP W YP+SY+++ +++I+
Sbjct: 545 LPKIFWRYPVSYISYGSWAIQG 566
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8K2|AB12G_ARATH ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 359 bits (921), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 209/578 (36%), Positives = 338/578 (58%), Gaps = 27/578 (4%)
Query: 78 LSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKG-----KRRYSDKVVKSSNGY 132
L ++G P PP A + R GA + W+DLTV I RR D + NG+
Sbjct: 3 LESTSNGRRPPPP----AEIGR---GAYLAWEDLTVVIPNFSGGPTRRLLDGL----NGH 51
Query: 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETT 192
A PG + IMGP+ SGKSTLL ++AGRL + M G + +NG K+ + YG +V +E
Sbjct: 52 AEPGRIMAIMGPSGSGKSTLLDSLAGRLARNVIMTGNLLLNGKKARLDYGLVAYVTQEDI 111
Query: 193 LIGSLTVREYLYYSALLQLPGFFCQRK--NVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250
L+G+LTVRE + YSA L+L + + ++VE I + L D A+++IG + + +G+
Sbjct: 112 LMGTLTVRETITYSAHLRLSSDLTKEEVNDIVEGTIIELGLQDCADRVIG-NWHSRGVSG 170
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGC-TLLFTINQSST 309
GER+RV +A E++ RP +LF+DEP LDS SA ++ L+ +A G T++ +I+Q S+
Sbjct: 171 GERKRVSVALEILTRPQILFLDEPTSGLDSASAFFVIQALRNIARDGGRTVVSSIHQPSS 230
Query: 310 EVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIA 369
EVF LFD + LLS+G T++FGE+ ++ F+ AGFPCP ++PSDHFLR IN+DFD + A
Sbjct: 231 EVFALFDDLFLLSSGETVYFGESKFAVEFFAEAGFPCPKKRNPSDHFLRCINSDFDTVTA 290
Query: 370 MCKSWQDDHGDFSS----VNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKS 425
K Q ++ +N+ T+ L Y+ S A + ++ I L EG
Sbjct: 291 TLKGSQRIRETPATSDPLMNLATSEIKARLVENYRRSVYAKSAKSRIRELASIEGHHGME 350
Query: 426 KGKASSAT---RVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVV 482
K S AT ++ LT RS + M R+ YYW R+++ ++++ CVGT+F +GHS +S++
Sbjct: 351 VRKGSEATWFKQLRTLTKRSFVNMCRDIGYYWSRIVIYIVVSFCVGTIFYDVGHSYTSIL 410
Query: 483 TRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLI 542
RV+ F + ++I G P+ ++E+K + E + + G V+++ +SS PFL I
Sbjct: 411 ARVSCGGFITGFMTFMSIGGFPSFIEEMKVFYKERLSGYYGVSVYIISNYVSSFPFLVAI 470
Query: 543 SISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVH 602
++ + + Y +V R S +F LN F + V E LM+VVAS+ + ++T +
Sbjct: 471 ALITGSITYNMVKFRPGVSHWAFFCLNIFFSVSVIESLMMVVASLVPNFLMGLITGAGII 530
Query: 603 VVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640
++M+++G+FR+ LP W YPIS++++ +++I+
Sbjct: 531 GIIMMTSGFFRLLPDLPKVFWRYPISFMSYGSWAIQGA 568
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Involved in the secretion of cuticular wax from epidermal cells to the cuticle. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8J8|AB13G_ARATH ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 320 bits (821), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 194/567 (34%), Positives = 324/567 (57%), Gaps = 28/567 (4%)
Query: 92 PEGAAVARKIAGASVVWKDLTVTIKG-KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKS 150
PEGA V W+DLTV I + +++ NG P + IMGP+ SGKS
Sbjct: 4 PEGAMY--------VAWEDLTVVIPNFGEGATKRLLNGVNGCGEPNRILAIMGPSGSGKS 55
Query: 151 TLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210
TLL A+AGRL + M G+V VNG K + +G+ +V +E L+G+LTVRE + YSA L+
Sbjct: 56 TLLDALAGRLAGNVVMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLR 115
Query: 211 LPGFFCQRK--NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHV 268
LP + + ++VE I M L + +++ IG + +++G+ GE++R+ IA E++ +P +
Sbjct: 116 LPSKLTREEISDIVEATITDMGLEECSDRTIG-NWHLRGISGGEKKRLSIALEVLTKPSL 174
Query: 269 LFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328
LF+DEP LDS SA ++ L+ +AS+G T++ +I+Q S EVF LFD + LLS G T++
Sbjct: 175 LFLDEPTSGLDSASAFFVVQILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVY 234
Query: 329 FGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRII-AMCKSWQDDHGDFS----- 382
FGE + + F AGFPCP ++PSDHFLR +N+DFD + A+ +S + + FS
Sbjct: 235 FGEAESATKFFGEAGFPCPSRRNPSDHFLRCVNSDFDNVTAALVESRRINDSSFSLHQLH 294
Query: 383 -SVN-------MDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSA-- 432
+ N + TA TL ++ S AAA I + G + K + +
Sbjct: 295 ETTNTLDPLDDIPTAEIRTTLVRKFKCSLYAAASRARIQEIASIVGIVTERKKGSQTNWW 354
Query: 433 TRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFV 492
++ +LT RS + MSR+ YYW+R+ + ++L++CVG++F +G + ++V++ A
Sbjct: 355 KQLRILTQRSFINMSRDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMA 414
Query: 493 SFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYF 552
F + ++I G + ++E+K ++ E N H G V+ + LLSS+PF+ L+ +S+S + +
Sbjct: 415 GFMTFMSIGGFQSFIEEMKVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIY 474
Query: 553 LVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYF 612
+V + S Y L+ + E M+++AS+ + ++ +M+LSAG+F
Sbjct: 475 MVRFQSGGSHFFYNCLDLICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSAGFF 534
Query: 613 RIRNALPGPVWTYPISYVAFHTYSIKA 639
R LP W YP+SY+ + ++++
Sbjct: 535 RFFPDLPMVFWRYPVSYINYGAWALQG 561
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P45843|SCRT_DROME Protein scarlet OS=Drosophila melanogaster GN=st PE=1 SV=3 | Back alignment and function description |
|---|
Score = 192 bits (487), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 162/589 (27%), Positives = 277/589 (47%), Gaps = 49/589 (8%)
Query: 57 EVRVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTV--T 114
E++V G +I + ++P LSK NS S S PL + + GA++VW+DL V
Sbjct: 21 ELQVMPVGSTIEVPSLDSTPKLSKRNS-SERSLPLRSYSKWSPTEQGATLVWRDLCVYTN 79
Query: 115 IKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174
+ G + +++ +S G PGT+ +MG + SGK+TL+ +A R P + G++ +NG
Sbjct: 80 VGGSGQRMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILING 139
Query: 175 AK-SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSL 231
+ + G+V ++ +GSLTV E+L + A L+L +R+ ++++ + L
Sbjct: 140 RRIGPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGL 199
Query: 232 SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 291
A IG K L GER+R+ A EL+ P +LF DEP LDS SA ++ TL
Sbjct: 200 LSAAQTRIGSGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLY 259
Query: 292 KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQS 351
+LA G T+L TI+Q S+++F F+ + LL++G F G L F+N G+ CP +
Sbjct: 260 ELAQKGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYN 319
Query: 352 PSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETM 411
P+D + + TD A +S Q F + + AA M
Sbjct: 320 PADFLIGVLATDPGYEQASQRSAQHLCDQF-------------------AVSSAAKQRDM 360
Query: 412 ILRLT---EKEGPF-----LKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMIL 463
++ L + G F ++S + R V+ R+ L + R+ WLR I + +
Sbjct: 361 LVNLEIHMAQSGNFPFDTEVESFRGVAWYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAM 420
Query: 464 TLCVGTVFSGLGHSLSSVVTRV-AAIFVFVSFN------SLLNI--AGVPALMKEIKTYA 514
+G F+G V V A+F+ +S N S+LN+ G P M+E ++
Sbjct: 421 AFIIGACFAGTTEPSQLGVQAVQGALFIMISENTYHPMYSVLNLFPQGFPLFMRETRSGL 480
Query: 515 SEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCL 574
++ ++ LL ++ P +F+I + Y+L GLR F + + +
Sbjct: 481 YSTGQYYAANILALLPGMIIE-PLIFVI------ICYWLTGLRSTFYAFGVTAMCVVLVM 533
Query: 575 LVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVW 623
V ++ + V ++ L+ + + M+++G F N+LP W
Sbjct: 534 NVATACGCFFSTAFNSVPLAMAYLVPLDYIFMITSGIFIQVNSLPVAFW 582
|
Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules. Drosophila melanogaster (taxid: 7227) |
| >sp|Q9H222|ABCG5_HUMAN ATP-binding cassette sub-family G member 5 OS=Homo sapiens GN=ABCG5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 190 bits (483), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 158/550 (28%), Positives = 273/550 (49%), Gaps = 55/550 (10%)
Query: 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY 167
W D+T +++++ +++K + Y G + I+G + SGK+TLL A++GRL +
Sbjct: 54 WWDIT---SCRQQWTRQILKDVSLYVESGQIMCILGSSGSGKTTLLDAMSGRLGRAGTFL 110
Query: 168 GEVFVNGA--KSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL----PGFFCQRKNV 221
GEV+VNG + E + +V + TL+ SLTVRE L+Y+ALL + PG F Q+K
Sbjct: 111 GEVYVNGRALRREQFQDCFSYVLQSDTLLSSLTVRETLHYTALLAIRRGNPGSF-QKK-- 167
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
VE + +SLS A++LIG + + G+ GERRRV IA +L+ P V+ DEP LD +
Sbjct: 168 VEAVMAELSLSHVADRLIGNYS-LGGISTGERRRVSIAAQLLQDPKVMLFDEPTTGLDCM 226
Query: 282 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341
+A ++V L +LA ++ TI+Q +E+F LFD+I +LS G +F G L F++
Sbjct: 227 TANQIVVLLVELARRNRIVVLTIHQPRSELFQLFDKIAILSFGELIFCGTPAEMLDFFND 286
Query: 342 AGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQS 401
G+PCP +P D ++ + D +S + + ++T+ ++ +E+ Y+
Sbjct: 287 CGYPCPEHSNPFDFYMDLTSVD-------TQSKERE--------IETSKRVQMIESAYKK 331
Query: 402 SADAAAVETMILRLTE-KEGPFLKSKGKASSA--TRVAVLTWR--------SLLIMSREW 450
SA I R+ K P + K K S +++ VL R L +++R
Sbjct: 332 SAICHKTLKNIERMKHLKTLPMVPFKTKDSPGVFSKLGVLLRRVTRNLVRNKLAVITRLL 391
Query: 451 KYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVS---FNSLLNIAGVPALM 507
+ + L L + V G ++ RV ++ FV + +LN + ++
Sbjct: 392 QNLIMGLFLLFFVLRVRSNVLKG------AIQDRVGLLYQFVGATPYTGMLNAVNLFPVL 445
Query: 508 KEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFV 567
+ + S++ + +L L +PF + ++ S V Y+ +GL E + YF
Sbjct: 446 RAVSDQESQDGLYQKWQM--MLAYALHVLPFSVVATMIFSSVCYWTLGLHPEVARFGYFS 503
Query: 568 LNFFMCLLVNEGLMLVVASIWK--DVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTY 625
L+ E L LV+ I + ++ S++ L+S+ V ++ +G+ R +P P
Sbjct: 504 AALLAPHLIGEFLTLVLLGIVQNPNIVNSVVALLSIAGV-LVGSGFLRNIQEMPIPFKI- 561
Query: 626 PISYVAFHTY 635
ISY F Y
Sbjct: 562 -ISYFTFQKY 570
|
Transporter that appears to play an indispensable role in the selective transport of the dietary cholesterol in and out of the enterocytes and in the selective sterol excretion by the liver into bile. Homo sapiens (taxid: 9606) |
| >sp|Q80W57|ABCG2_RAT ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 184 bits (466), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 158/587 (26%), Positives = 269/587 (45%), Gaps = 43/587 (7%)
Query: 78 LSKLNSGSLPSPPLPEGAAVARKIAGASVV-WKDLTVTIKGK-----RRYSDKVVKSS-N 130
+S+ N LP + AR +A V+ + +T +K K R+ ++K + S N
Sbjct: 12 MSQRNKNGLPG----MSSRGARTLAEGDVLSFHHITYRVKVKSGFLVRKTAEKEILSDIN 67
Query: 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG-SYGFVER 189
G PG + I+GP GKS+LL +A R + G+V +NGA + S G+V +
Sbjct: 68 GIMKPG-LNAILGPTGGGKSSLLDVLAAR-KDPRGLSGDVLINGAPQPANFKCSSGYVVQ 125
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFF--CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247
+ ++G+LTVRE L +SA L+LP ++ + I + L A+ +G + +G
Sbjct: 126 DDVVMGTLTVRENLQFSAALRLPKAMKTHEKNERINTIIKELGLDKVADSKVGTQ-FTRG 184
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307
+ GER+R I EL+ P +LF+DEP LDS +A +++ LK+++ G T++F+I+Q
Sbjct: 185 ISGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQP 244
Query: 308 STEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRI 367
+F LFD + LL++G +F G L++F++AG+ C +P+D FL IN D +
Sbjct: 245 RYSIFKLFDSLTLLASGKLMFHGPAQKALEYFASAGYHCEPYNNPADFFLDVINGDSSAV 304
Query: 368 IAMCKSWQDDH--GDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKS 425
M + DH + I L Y +S + + +L +
Sbjct: 305 --MLNRGEQDHEANKTEEPSKREKPIIENLAEFYINSTIYGETKAELDQLP------VAQ 356
Query: 426 KGKASSATRVAV--------LTW---RSLLIMSREWKYYWLRLILCMILTLCVGTVFSGL 474
K K SSA R V L W RS + + +LI+ +IL L +G ++ GL
Sbjct: 357 KKKGSSAFREPVYVTSFCHQLRWIARRSFKNLLGNPQASVAQLIVTVILGLIIGALYFGL 416
Query: 475 GHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLS 534
+ + + R F + +++ V + E K + E + + + G+L+S
Sbjct: 417 KNDPTGMQNRAGVFFFLTTNQCFTSVSAVELFVVEKKLFIHEYISGYYRVSSYFFGKLVS 476
Query: 535 S-IPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYW 593
+P FL S+ + + YF++GL+ + M + L +A+ V
Sbjct: 477 DLLPMRFLPSVIYTCILYFMLGLKRTVEAFFIMMFTLIMVAYTASSMALAIAAGQSVVSV 536
Query: 594 SILTLISVHVVMMLSAGYF-RIRNALPGPVWTYPISYVAFHTYSIKA 639
+ L + V MML +G +R P W + Y + Y A
Sbjct: 537 ATLLMTISFVFMMLFSGLLVNLRTIGP---WLSWLQYFSIPRYGFTA 580
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Rattus norvegicus (taxid: 10116) |
| >sp|Q4GZT4|ABCG2_BOVIN ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 183 bits (465), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 140/533 (26%), Positives = 255/533 (47%), Gaps = 18/533 (3%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAK 176
++ +++ + NG PG + I+GP GKS+LL +A R PH + G+V +NGA
Sbjct: 55 RKTIEKEILANINGVMKPG-LNAILGPTGGGKSSLLDILAARKDPHG--LSGDVLINGAP 111
Query: 177 SEMPYG-SYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSD 233
+ + G+V ++ ++G+LTVRE L +SA L+LP ++ + I + L
Sbjct: 112 RPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSYEKNERINKVIQELGLDK 171
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
A+ +G +++G+ GER+R IA EL+ P +LF+DEP LDS +A +++ LK++
Sbjct: 172 VADSKVGTQ-FIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRM 230
Query: 294 ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPS 353
+ G T++F+I+Q +F LFD + LL++G +F G L +F GF C +P+
Sbjct: 231 SKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFGAIGFRCEPYNNPA 290
Query: 354 DHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMIL 413
D FL IN D ++ + D+ + + I L Y +S+ + +
Sbjct: 291 DFFLDIINGDSSAVVLNREDIGDEANETEEPSKKDTPLIEKLAEFYVNSSFFKETKVELD 350
Query: 414 RLT----EKEGPFLKSKGKASS-ATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVG 468
+ + K+ P K A+S ++ ++ RS + + +LI+ + L L +G
Sbjct: 351 KFSGDQRRKKLPSYKEVTYATSFCHQLKWISRRSFKNLLGNPQASIAQLIVTVFLGLVIG 410
Query: 469 TVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFL 528
+F L + + + R +F + +++ V L+ E K + E + + +
Sbjct: 411 AIFYDLKNDPAGIQNRAGVLFFLTTNQCFSSVSAVELLVVEKKLFIHEYISGYYRVSSYF 470
Query: 529 LGQLLSS-IPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASI 587
G+LLS +P L SI + + YFL+GL+ + +L M + L +A+
Sbjct: 471 FGKLLSDLLPMRMLPSIIFTCITYFLLGLKPKVEAFFIMMLTLMMVAYSASSMALAIAAG 530
Query: 588 WKDVYWSILTLISVHVVMMLSAGYF-RIRNALPGPVWTYPISYVAFHTYSIKA 639
V + L + V MM+ +G ++ +P W + Y++ Y A
Sbjct: 531 QSVVSIATLLMTISFVFMMIFSGLLVNLKTVVP---WLSWLQYLSIPRYGYAA 580
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Bos taurus (taxid: 9913) |
| >sp|Q8MIB3|ABCG2_PIG ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (461), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 159/587 (27%), Positives = 277/587 (47%), Gaps = 42/587 (7%)
Query: 78 LSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGK------RRYSDK-VVKSSN 130
+SK N+ LP E A GA + + D+ +K K R+ +K ++ + N
Sbjct: 12 MSKRNTNGLPGSSSNELKTSA---GGAVLSFHDICYRVKVKSGFLFCRKTVEKEILTNIN 68
Query: 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYG-SYGFVE 188
G PG + I+GP GKS+LL +A R PH + G+V +NGA + + G+V
Sbjct: 69 GIMKPG-LNAILGPTGGGKSSLLDVLAARKDPHG--LSGDVLINGAPRPANFKCNSGYVV 125
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246
++ ++G+LTVRE L +SA L+LP ++ + I + L A+ +G +++
Sbjct: 126 QDDVVMGTLTVRENLQFSAALRLPTTMTNHEKNERINMVIQELGLDKVADSKVGTQ-FIR 184
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 306
G+ GER+R IA EL+ P +LF+DEP LDS +A +++ LK+++ G T++F+I+Q
Sbjct: 185 GVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQ 244
Query: 307 SSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDR 366
+F LFD + LL++G +F G L +F++ G+ C +P+D FL IN D
Sbjct: 245 PRYSIFKLFDSLTLLASGRLMFHGPAREALGYFASIGYNCEPYNNPADFFLDVINGDSSA 304
Query: 367 IIAMCKSWQDDHGDFSSV--NMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLK 424
++ + ++ +D+ DT + I L A Y +S + + + L + G +
Sbjct: 305 VV-LSRADRDEGAQEPEEPPEKDTPL-IDKLAAFYTNS---SFFKDTKVELDQFSGG--R 357
Query: 425 SKGKASSATRVAVLT-------W---RSLLIMSREWKYYWLRLILCMILTLCVGTVFSGL 474
K K+S V T W RS + + ++I+ +IL L +G +F L
Sbjct: 358 KKKKSSVYKEVTYTTSFCHQLRWISRRSFKNLLGNPQASVAQIIVTIILGLVIGAIFYDL 417
Query: 475 GHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLS 534
+ S + R +F + +++ V L+ E K + E + + + G+LLS
Sbjct: 418 KNDPSGIQNRAGVLFFLTTNQCFSSVSAVELLVVEKKLFIHEYISGYYRVSSYFFGKLLS 477
Query: 535 S-IPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYW 593
+P L SI + + YFL+GL+ + M + L +A+ V
Sbjct: 478 DLLPMRMLPSIIFTCITYFLLGLKPAVGSFFIMMFTLMMVAYSASSMALAIAAGQSVVSV 537
Query: 594 SILTLISVHVVMMLSAGYF-RIRNALPGPVWTYPISYVAFHTYSIKA 639
+ L + V MM+ +G ++ +P W + Y + Y A
Sbjct: 538 ATLLMTISFVFMMIFSGLLVNLKTVVP---WLSWLQYFSIPRYGFSA 581
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Sus scrofa (taxid: 9823) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 641 | ||||||
| 255565401 | 722 | ATP-binding cassette transporter, putati | 0.998 | 0.886 | 0.903 | 0.0 | |
| 225436522 | 722 | PREDICTED: ABC transporter G family memb | 0.998 | 0.886 | 0.889 | 0.0 | |
| 449459100 | 721 | PREDICTED: ABC transporter G family memb | 1.0 | 0.889 | 0.879 | 0.0 | |
| 449501234 | 721 | PREDICTED: ABC transporter G family memb | 1.0 | 0.889 | 0.879 | 0.0 | |
| 356550154 | 724 | PREDICTED: ABC transporter G family memb | 1.0 | 0.885 | 0.879 | 0.0 | |
| 356543496 | 724 | PREDICTED: ABC transporter G family memb | 1.0 | 0.885 | 0.878 | 0.0 | |
| 358348033 | 725 | White-brown-complex ABC transporter fami | 1.0 | 0.884 | 0.861 | 0.0 | |
| 30683745 | 730 | ABC-2 type transporter-like protein [Ara | 1.0 | 0.878 | 0.839 | 0.0 | |
| 297826143 | 730 | abc transporter family protein [Arabidop | 1.0 | 0.878 | 0.839 | 0.0 | |
| 4063751 | 705 | putative ABC transporter [Arabidopsis th | 0.954 | 0.868 | 0.804 | 0.0 |
| >gi|255565401|ref|XP_002523691.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223536995|gb|EEF38631.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1187 bits (3071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/641 (90%), Positives = 618/641 (96%), Gaps = 1/641 (0%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTD++VR+
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDIDVRM 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSIN A TPASPSLSKLNSGSLPSPPLP+ VARKIAGASVVWKDLTVTIKGKR+
Sbjct: 61 EEGGDSINLAVTPASPSLSKLNSGSLPSPPLPDSTVVARKIAGASVVWKDLTVTIKGKRK 120
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKVVKSS+GYALPGTMTVIMGPAKSGKSTLLRAIAGRL HSA+MYGEVFVNGAKS +P
Sbjct: 121 YSDKVVKSSSGYALPGTMTVIMGPAKSGKSTLLRAIAGRLHHSAKMYGEVFVNGAKSRLP 180
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
YGSYGFVERETTLIGSLTV+EYLYYSALLQLPGFFC++K+VVEDAIHAMSL+DYANKLIG
Sbjct: 181 YGSYGFVERETTLIGSLTVQEYLYYSALLQLPGFFCKKKSVVEDAIHAMSLTDYANKLIG 240
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
GHCYMKGL GERRRV +ARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKKLASTGCTL
Sbjct: 241 GHCYMKGLRNGERRRVSMARELVMRPHILFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
+FTI QSSTEVFGLFDRICLLSNGNTLFFGETL+CLQHFSNAGFPCPIMQSPSDHFLRAI
Sbjct: 301 IFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLSCLQHFSNAGFPCPIMQSPSDHFLRAI 360
Query: 361 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 420
NTDFDRIIAMCK+WQDD GDFSSVNMDTAVAIRTLEATY+SSADAAAVETM LRLTEKEG
Sbjct: 361 NTDFDRIIAMCKNWQDD-GDFSSVNMDTAVAIRTLEATYKSSADAAAVETMTLRLTEKEG 419
Query: 421 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 480
P+LKSKGKASSATR+AVLTWRSLLIMSREWKYYWLRLILCM+LTLC+GTVFSGLGHSLSS
Sbjct: 420 PYLKSKGKASSATRIAVLTWRSLLIMSREWKYYWLRLILCMLLTLCIGTVFSGLGHSLSS 479
Query: 481 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLF 540
VVTRVAAIFVFVSF SL+ IAGVP+L KEIK YASEESN HSGALVFLLGQLLSSIPFLF
Sbjct: 480 VVTRVAAIFVFVSFTSLIGIAGVPSLQKEIKIYASEESNRHSGALVFLLGQLLSSIPFLF 539
Query: 541 LISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLIS 600
LISISSSLVFYFL+GLRDEFSLLMYFVLNFF+ LLVNEGLML++ S+W+ V+WSILT++S
Sbjct: 540 LISISSSLVFYFLIGLRDEFSLLMYFVLNFFISLLVNEGLMLLITSLWQHVFWSILTMVS 599
Query: 601 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKACI 641
+HVVMMLSAGYFRIRNALPGPVWTYP+SY+AFHTYSI+ +
Sbjct: 600 IHVVMMLSAGYFRIRNALPGPVWTYPVSYIAFHTYSIQGLL 640
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225436522|ref|XP_002273792.1| PREDICTED: ABC transporter G family member 3 [Vitis vinifera] gi|297734935|emb|CBI17169.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1176 bits (3041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/641 (88%), Positives = 613/641 (95%), Gaps = 1/641 (0%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTD++VRV
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDIDVRV 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSI+ AT PASPSLSKLNSGSLPSPPLPE A ARKIAGAS+VWKDLTVTIKGKR+
Sbjct: 61 EEGGDSIHIAT-PASPSLSKLNSGSLPSPPLPESAIFARKIAGASIVWKDLTVTIKGKRK 119
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKVVKSSNGY LPGTMTVIMGPAKSGKSTLLRA+AGRL +SA+MYGEVFVNG K +P
Sbjct: 120 YSDKVVKSSNGYTLPGTMTVIMGPAKSGKSTLLRALAGRLHNSAKMYGEVFVNGTKRHLP 179
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
YGSYGFVERETTLIGSLTVRE+LYYSALLQLPGFFCQ+K+VVED+IHAMSL DYANKLIG
Sbjct: 180 YGSYGFVERETTLIGSLTVREFLYYSALLQLPGFFCQKKSVVEDSIHAMSLGDYANKLIG 239
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
GHCYMKGLP GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKKLASTGCTL
Sbjct: 240 GHCYMKGLPSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 299
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI
Sbjct: 300 IFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 359
Query: 361 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 420
NTDFDRIIAMCK+WQDDHGDFSSVNMDTAVAIRTLEATY+SS DAAAVE+MI++LT+KEG
Sbjct: 360 NTDFDRIIAMCKNWQDDHGDFSSVNMDTAVAIRTLEATYKSSVDAAAVESMIIKLTDKEG 419
Query: 421 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 480
P LKSKGKASSATR+AVLTWRSLLIMSREWKY+WLRL+LCM+ TLCVGTVFSGLGHSLSS
Sbjct: 420 PLLKSKGKASSATRIAVLTWRSLLIMSREWKYFWLRLVLCMLFTLCVGTVFSGLGHSLSS 479
Query: 481 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLF 540
VVTRVAAIFVFVSF SLL+IAGVPA +KEIK YA EESN HSGALVFLLGQLL+SIPFLF
Sbjct: 480 VVTRVAAIFVFVSFTSLLSIAGVPAHLKEIKIYACEESNQHSGALVFLLGQLLASIPFLF 539
Query: 541 LISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLIS 600
LIS+SSSL+FYFL+GLRDEFSLLMYFVLNFF CLLVNEGL LVVASIW+D +WSILTL+
Sbjct: 540 LISVSSSLIFYFLIGLRDEFSLLMYFVLNFFTCLLVNEGLTLVVASIWQDAFWSILTLVC 599
Query: 601 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKACI 641
+HV+MMLSAGYFR+R+ALPGPVWTYP+SY+AFHTY+I+ +
Sbjct: 600 IHVLMMLSAGYFRLRSALPGPVWTYPLSYIAFHTYAIQGLL 640
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459100|ref|XP_004147284.1| PREDICTED: ABC transporter G family member 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1161 bits (3003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/641 (87%), Positives = 612/641 (95%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSP SRVPSSNFFYLRKPGSLRQPISFEDSP+WE+TD++VR+
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPVSRVPSSNFFYLRKPGSLRQPISFEDSPDWEETDIDVRI 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSINAATTPASPSLSKLNS SLPSPPLPEGA V RKI+GA + WKDLTVTIKGKR+
Sbjct: 61 EEGGDSINAATTPASPSLSKLNSCSLPSPPLPEGAGVGRKISGAYIAWKDLTVTIKGKRK 120
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA+AGRL SA+MYGE+FVNG KS MP
Sbjct: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRALAGRLHRSAKMYGELFVNGTKSRMP 180
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
YGSYGFVE+ETTLIGSLTVRE+L+YSALLQLPGFF Q+KNVVEDAIHAMSLSDYANKLIG
Sbjct: 181 YGSYGFVEKETTLIGSLTVREFLFYSALLQLPGFFFQKKNVVEDAIHAMSLSDYANKLIG 240
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
GHCYMKGLP GERRRV IARELVMRP +LFIDEPLYHLDSVSALLMMVTLKKLASTGCTL
Sbjct: 241 GHCYMKGLPNGERRRVSIARELVMRPQILFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
+FTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF+NAGFPCPIMQSPSDHFLRAI
Sbjct: 301 VFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFANAGFPCPIMQSPSDHFLRAI 360
Query: 361 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 420
NTDFDRIIAMCK+WQDD G+FSSVNMDTAVAIRTLEATY+SSADAAAVETMILRLT+KEG
Sbjct: 361 NTDFDRIIAMCKNWQDDQGEFSSVNMDTAVAIRTLEATYKSSADAAAVETMILRLTDKEG 420
Query: 421 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 480
P LKSKGKAS+ TR+AVLTWRSLL+MSREWKYYWLRLIL M+L +C+GTVFSGLGHSLSS
Sbjct: 421 PSLKSKGKASNLTRIAVLTWRSLLVMSREWKYYWLRLILYMLLAVCIGTVFSGLGHSLSS 480
Query: 481 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLF 540
VVTRVAA+FVFVSF SLL++AGVPALM+E+K Y SEESN HSGA VFLLGQLLSSIPFLF
Sbjct: 481 VVTRVAAVFVFVSFTSLLSVAGVPALMREVKIYNSEESNYHSGAFVFLLGQLLSSIPFLF 540
Query: 541 LISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLIS 600
LISISSSLVFYFL+GLRDEF LLMYFVLNFFMCLLVNEGL+LV+AS+W++++W +LTL+S
Sbjct: 541 LISISSSLVFYFLIGLRDEFKLLMYFVLNFFMCLLVNEGLILVMASLWRNIFWIVLTLVS 600
Query: 601 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKACI 641
HV+MMLSAGYFRIRNALPGPVWTYP+SY+AFHTYSI+ +
Sbjct: 601 AHVLMMLSAGYFRIRNALPGPVWTYPLSYIAFHTYSIQGLL 641
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449501234|ref|XP_004161314.1| PREDICTED: ABC transporter G family member 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1161 bits (3003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/641 (87%), Positives = 612/641 (95%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSP SRVPSSNFFYLRKPGSLRQPISFEDSP+WE+TD++VR+
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPVSRVPSSNFFYLRKPGSLRQPISFEDSPDWEETDIDVRI 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSINAATTPASPSLSKLNS SLPSPPLPEGA V RKI+GA + WKDLTVTIKGKR+
Sbjct: 61 EEGGDSINAATTPASPSLSKLNSCSLPSPPLPEGAGVGRKISGAYIAWKDLTVTIKGKRK 120
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA+AGRL SA+MYGE+FVNG KS MP
Sbjct: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRALAGRLHRSAKMYGELFVNGTKSRMP 180
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
YGSYGFVE+ETTLIGSLTVRE+L+YSALLQLPGFF Q+KNVVEDAIHAMSLSDYANKLIG
Sbjct: 181 YGSYGFVEKETTLIGSLTVREFLFYSALLQLPGFFFQKKNVVEDAIHAMSLSDYANKLIG 240
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
GHCYMKGLP GERRRV IARELVMRP +LFIDEPLYHLDSVSALLMMVTLKKLASTGCTL
Sbjct: 241 GHCYMKGLPNGERRRVSIARELVMRPQILFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
+FTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF+NAGFPCPIMQSPSDHFLRAI
Sbjct: 301 VFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFANAGFPCPIMQSPSDHFLRAI 360
Query: 361 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 420
NTDFDRIIAMCK+WQDD G+FSSVNMDTAVAIRTLEATY+SSADAAAVETMILRLT+KEG
Sbjct: 361 NTDFDRIIAMCKNWQDDQGEFSSVNMDTAVAIRTLEATYKSSADAAAVETMILRLTDKEG 420
Query: 421 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 480
P LKSKGKAS+ TR+AVLTWRSLL+MSREWKYYWLRLIL M+L +C+GTVFSGLGHSLSS
Sbjct: 421 PSLKSKGKASNLTRIAVLTWRSLLVMSREWKYYWLRLILYMLLAVCIGTVFSGLGHSLSS 480
Query: 481 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLF 540
VVTRVAA+FVFVSF SLL++AGVPALM+E+K Y SEESN HSGA VFLLGQLLSSIPFLF
Sbjct: 481 VVTRVAAVFVFVSFTSLLSVAGVPALMREVKIYNSEESNYHSGAFVFLLGQLLSSIPFLF 540
Query: 541 LISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLIS 600
LISISSSLVFYFL+GLRDEF LLMYFVLNFFMCLLVNEGL+LV+AS+W++++W +LTL+S
Sbjct: 541 LISISSSLVFYFLIGLRDEFKLLMYFVLNFFMCLLVNEGLILVMASLWRNIFWIVLTLVS 600
Query: 601 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKACI 641
HV+MMLSAGYFRIRNALPGPVWTYP+SY+AFHTYSI+ +
Sbjct: 601 AHVLMMLSAGYFRIRNALPGPVWTYPLSYIAFHTYSIQGLL 641
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550154|ref|XP_003543454.1| PREDICTED: ABC transporter G family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1155 bits (2987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/641 (87%), Positives = 605/641 (94%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTD++VRV
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDIDVRV 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSIN ATTPASPSLSKLNSGSLPSP LPEGA + RKIAGASV WKDLT+TIKGKR+
Sbjct: 61 EEGGDSINVATTPASPSLSKLNSGSLPSPRLPEGAVIPRKIAGASVAWKDLTITIKGKRK 120
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKV+KSS GYALPGTMTVIMGPAKSGKSTLLRAIAGRL SARMYGEVFVNGAKS+MP
Sbjct: 121 YSDKVIKSSTGYALPGTMTVIMGPAKSGKSTLLRAIAGRLHPSARMYGEVFVNGAKSQMP 180
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
YGSYG+VERETTLIGSLTVRE+LYYSALLQLPGFFCQ+K+VVEDAIHAMSL D+ANKLIG
Sbjct: 181 YGSYGYVERETTLIGSLTVREFLYYSALLQLPGFFCQKKSVVEDAIHAMSLGDHANKLIG 240
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
GHCYMKGLP GERR V IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLK+LASTG TL
Sbjct: 241 GHCYMKGLPSGERRLVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKRLASTGYTL 300
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
+ TI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI
Sbjct: 301 IVTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
Query: 361 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 420
NTDFDRIIAMCK+WQDD+GDFSSVNMDTAVAIRTLEATY+SSADAAAVETMIL+LTEKEG
Sbjct: 361 NTDFDRIIAMCKNWQDDNGDFSSVNMDTAVAIRTLEATYKSSADAAAVETMILKLTEKEG 420
Query: 421 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 480
P LKSKGKAS+ATR+AVLTWRSLL++SREW YYWL L L M+LTLC+GTVFSGLGHSLSS
Sbjct: 421 PVLKSKGKASNATRIAVLTWRSLLVVSREWNYYWLHLTLYMLLTLCIGTVFSGLGHSLSS 480
Query: 481 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLF 540
VVTRVAAIFVFVSF SLL+IA VPAL+KEIK YA EESN HS LVFLL QLLSSIPFLF
Sbjct: 481 VVTRVAAIFVFVSFCSLLSIARVPALLKEIKIYACEESNQHSSTLVFLLAQLLSSIPFLF 540
Query: 541 LISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLIS 600
LISISSSLVFYFLVGL D+FSLLMYFVLNFFM LLVNEGLMLVVA++W+DV+WS+LTL+
Sbjct: 541 LISISSSLVFYFLVGLEDQFSLLMYFVLNFFMTLLVNEGLMLVVATLWQDVFWSVLTLLC 600
Query: 601 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKACI 641
+HV MML AGYFR+RNALPGP+W YP+SY+AFHTYSI+ +
Sbjct: 601 IHVAMMLPAGYFRVRNALPGPMWVYPMSYIAFHTYSIQGLL 641
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543496|ref|XP_003540196.1| PREDICTED: ABC transporter G family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1151 bits (2977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/641 (87%), Positives = 603/641 (94%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLR PISFEDSPEWEDTD++ RV
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRHPISFEDSPEWEDTDIDARV 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSIN ATTPASPSLSKLNSGSLPSP LPEGA + RKIAGASV WKDLT+TIKGKR+
Sbjct: 61 EEGGDSINVATTPASPSLSKLNSGSLPSPHLPEGAVIPRKIAGASVAWKDLTITIKGKRK 120
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKV+KSS GYA+PGTMTVIMGPAKSGKSTLLRAIAGRL SARMYGEVFVNGAKS+MP
Sbjct: 121 YSDKVIKSSTGYAIPGTMTVIMGPAKSGKSTLLRAIAGRLHPSARMYGEVFVNGAKSQMP 180
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
YGSYG+VERETTLIGSLTVRE+LYYSALLQLPGFFCQ+K+VVEDAIHAMSL D+ANKLIG
Sbjct: 181 YGSYGYVERETTLIGSLTVREFLYYSALLQLPGFFCQKKSVVEDAIHAMSLGDHANKLIG 240
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
GHCYMKGLP GERR V IARELVMRP +LFIDEPLYHLDSVSALLMMVTLK+LASTG TL
Sbjct: 241 GHCYMKGLPSGERRLVSIARELVMRPRILFIDEPLYHLDSVSALLMMVTLKRLASTGYTL 300
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
+ TI QSSTEVFGLFD ICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI
Sbjct: 301 IVTIYQSSTEVFGLFDHICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
Query: 361 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 420
NTDFDRIIAMCK+WQDD+GDFSSVNMDTAVAIRTLEATY+SSADAAAVETMIL+LTEKEG
Sbjct: 361 NTDFDRIIAMCKNWQDDNGDFSSVNMDTAVAIRTLEATYKSSADAAAVETMILKLTEKEG 420
Query: 421 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 480
P LKSKGKAS+ATR+AV TWRSLL++SREWKYYWL LIL M+LTLC+GTVFSGLGHSLSS
Sbjct: 421 PVLKSKGKASNATRIAVSTWRSLLVVSREWKYYWLHLILYMLLTLCIGTVFSGLGHSLSS 480
Query: 481 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLF 540
VVTRVAAIFVFVSF SLL+IA VPALMKEIK YA EESN HS LVFLL QLLSSIPFLF
Sbjct: 481 VVTRVAAIFVFVSFCSLLSIARVPALMKEIKIYACEESNQHSSTLVFLLAQLLSSIPFLF 540
Query: 541 LISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLIS 600
LISISSSLVFYFLVGL D+FSLLMYFVLNFFM LLVNEGLMLVVA++W+DV+WS+LTL+
Sbjct: 541 LISISSSLVFYFLVGLEDQFSLLMYFVLNFFMTLLVNEGLMLVVATLWQDVFWSVLTLLC 600
Query: 601 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKACI 641
+HV MMLSAGYFR+RNALPGPVW YP+SY+AFHTYSI+ +
Sbjct: 601 IHVAMMLSAGYFRVRNALPGPVWMYPMSYIAFHTYSIQGLL 641
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358348033|ref|XP_003638054.1| White-brown-complex ABC transporter family [Medicago truncatula] gi|355503989|gb|AES85192.1| White-brown-complex ABC transporter family [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1134 bits (2933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/642 (86%), Positives = 603/642 (93%), Gaps = 1/642 (0%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEW+DT D++VR
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWDDTTDIDVR 60
Query: 60 VEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKR 119
+EGGDSINAATTPASPSLSKLNSGSLPSP +P+GA + RKIAGASV WKDLTVTIKGKR
Sbjct: 61 ADEGGDSINAATTPASPSLSKLNSGSLPSPHIPDGAVIPRKIAGASVAWKDLTVTIKGKR 120
Query: 120 RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM 179
+YSDKV+KSS GYALPGT+TVIMGPAKSGKSTLLRAIAGRL SARMYGEVFVNGAKS+M
Sbjct: 121 KYSDKVIKSSTGYALPGTLTVIMGPAKSGKSTLLRAIAGRLHPSARMYGEVFVNGAKSQM 180
Query: 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLI 239
PYGSYG+V+RETTLIGSLTVRE+LYYSALLQLPGFFCQ+K+VVEDAIHAMSL D+ANKLI
Sbjct: 181 PYGSYGYVDRETTLIGSLTVREFLYYSALLQLPGFFCQKKSVVEDAIHAMSLGDHANKLI 240
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
GGHCYMKGLP GERR V IARELVMRP +LF+DEPLYHLDSVSALLMMVTL++LASTGCT
Sbjct: 241 GGHCYMKGLPSGERRLVSIARELVMRPRILFLDEPLYHLDSVSALLMMVTLRRLASTGCT 300
Query: 300 LLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRA 359
L+ TI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRA
Sbjct: 301 LIITIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRA 360
Query: 360 INTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKE 419
INTDFDRIIAMCK+WQDD+GDFSSVNMDTAVAIRTLEATY+SSADAA+VETMIL+LTEKE
Sbjct: 361 INTDFDRIIAMCKNWQDDNGDFSSVNMDTAVAIRTLEATYKSSADAASVETMILKLTEKE 420
Query: 420 GPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLS 479
GP LKSKGKAS+ATRVAVLTWRSLL++SREWKYYWL L+L M+LTLC+GTVFSGLGHSL
Sbjct: 421 GPALKSKGKASNATRVAVLTWRSLLVVSREWKYYWLHLVLYMLLTLCIGTVFSGLGHSLY 480
Query: 480 SVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFL 539
SV RVAAIF FVSF SLL+IA VPALMKEIK YA EESN HS VFLL QLLSSIPFL
Sbjct: 481 SVSARVAAIFAFVSFCSLLSIARVPALMKEIKVYACEESNQHSSTFVFLLAQLLSSIPFL 540
Query: 540 FLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLI 599
FLISI+SSLVFYFLVGL D+FSLLMYFVLNFFM LL+NEG+MLVVA++W+DV+WS+LTL+
Sbjct: 541 FLISITSSLVFYFLVGLEDQFSLLMYFVLNFFMTLLLNEGIMLVVATLWQDVFWSVLTLL 600
Query: 600 SVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKACI 641
+HVVMMLSAGYFRIR+ LPGPVW YP+SY+AFHTYSI+ +
Sbjct: 601 CIHVVMMLSAGYFRIRSTLPGPVWMYPMSYIAFHTYSIQGLL 642
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30683745|ref|NP_850111.1| ABC-2 type transporter-like protein [Arabidopsis thaliana] gi|334302769|sp|Q9ZUU9.2|AB3G_ARATH RecName: Full=ABC transporter G family member 3; Short=ABC transporter ABCG.3; Short=AtABCG3; AltName: Full=White-brown complex homolog protein 3; Short=AtWBC3 gi|330252981|gb|AEC08075.1| ABC-2 type transporter-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1108 bits (2866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/649 (83%), Positives = 596/649 (91%), Gaps = 8/649 (1%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEIQSQSD YRSSSSSASSP SRVPSS+FFY+RKPGSLRQPISFEDSPEWEDT DV++R
Sbjct: 1 MEEIQSQSDLYRSSSSSASSPTSRVPSSHFFYVRKPGSLRQPISFEDSPEWEDTPDVDLR 60
Query: 60 VEE---GGDSIN-AATTPASPSLSKLNSGSLPSPPLPEGAA---VARKIAGASVVWKDLT 112
+E+ GGDSIN A TTP SPSLSK+NSGS+ SPP+PEG A V RKIAGAS+ WKDLT
Sbjct: 61 MEDEAGGGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGTGVVRKIAGASIAWKDLT 120
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172
VT+KGKR+YSDKVVKSSNGYA PGTMTVIMGPAKSGKSTLLRA+AGRLP SA+MYGEVFV
Sbjct: 121 VTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSAKMYGEVFV 180
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
NG+KS MPYGSYGFVERET LIGSLTVRE+LYYSALLQLPGF Q+++VVEDAI AMSLS
Sbjct: 181 NGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKRSVVEDAIQAMSLS 240
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
DYANKLIGGHCYMKGL GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKK
Sbjct: 241 DYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKK 300
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 352
LAS GCTL+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP
Sbjct: 301 LASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 360
Query: 353 SDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412
SDHFLRAINTDFDRIIAMCK+WQDD+GDFS+VNMDTAVAIRTLEATY+SSADA +VE MI
Sbjct: 361 SDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEATYKSSADADSVEAMI 420
Query: 413 LRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFS 472
++LTE+EG LKSKGKA +ATRVAVLTWRSLL+MSREWKYYWLRLIL MILTL +GT++S
Sbjct: 421 IKLTEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYS 480
Query: 473 GLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQL 532
GLGHSLSSV TRVAA+FVFVSF SLL IAG+P+L+KEIK Y SE SN HSGA VFLLGQ
Sbjct: 481 GLGHSLSSVATRVAAVFVFVSFASLLGIAGIPSLLKEIKIYRSEASNQHSGAFVFLLGQF 540
Query: 533 LSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVY 592
L SIPFLFL+SISSSLVFYF+VGLRD+FSLLMYFVLNFFMCLLVNEGLML +A IW+DVY
Sbjct: 541 LGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCLLVNEGLMLFIACIWRDVY 600
Query: 593 WSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKACI 641
WS LTLISVHV+MML+AG+FRIR ALP PVWTYP +Y++FHTYSI+ +
Sbjct: 601 WSTLTLISVHVIMMLAAGHFRIRTALPKPVWTYPFAYISFHTYSIEGLL 649
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297826143|ref|XP_002880954.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297326793|gb|EFH57213.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1106 bits (2861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/649 (83%), Positives = 597/649 (91%), Gaps = 8/649 (1%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEIQSQ D YRSSSSSASSP SRVPSS+FFY+RKPGSLRQPISFEDSPEWEDT +V++R
Sbjct: 1 MEEIQSQPDLYRSSSSSASSPTSRVPSSHFFYVRKPGSLRQPISFEDSPEWEDTPNVDLR 60
Query: 60 VEE---GGDSIN-AATTPASPSLSKLNSGSLPSPPLPEGAA---VARKIAGASVVWKDLT 112
+E+ GGDSIN A TTP SPSLSK+NSGS+ SPP+PEG A V RKIAGAS+ WKDLT
Sbjct: 61 MEDEVGGGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGAGVVRKIAGASIAWKDLT 120
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172
VT+KGKR+YSDKVVKSSNGYA PGTMTVIMGPAKSGKSTLLRA+AGRLP SA+MYGEVFV
Sbjct: 121 VTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSAKMYGEVFV 180
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
NG+KS MPYGSYGFVERET LIGSLTVRE+LYYSALLQLPGF Q+++VVEDAI AMSLS
Sbjct: 181 NGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKRSVVEDAIQAMSLS 240
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
DYANKLIGGHCYMKGL GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKK
Sbjct: 241 DYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKK 300
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 352
LAS GCTL+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP
Sbjct: 301 LASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 360
Query: 353 SDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412
SDHFLRAINTDFDRIIAMCK+WQDD+GDFS+VNMDTAVAIRTLEATY+SSADA +VETMI
Sbjct: 361 SDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEATYKSSADADSVETMI 420
Query: 413 LRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFS 472
L+LTE+EG LKSKGKA +ATRVAVLTWRSLL+MSREWKYYWLRLIL MILTL +GT++S
Sbjct: 421 LKLTEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYS 480
Query: 473 GLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQL 532
GLGHSLSSV TRV+A+FVFVSF SLL IAG+P+L+KEIK Y SE SN HSGA VFLLGQ
Sbjct: 481 GLGHSLSSVATRVSAVFVFVSFASLLGIAGIPSLLKEIKIYRSEASNQHSGAFVFLLGQF 540
Query: 533 LSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVY 592
L SIPFLFL+SISSSLVFYF+VGLRD+FSLLMYFVLNFFMCLLVNEGLML +A IW+DVY
Sbjct: 541 LGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCLLVNEGLMLSIACIWRDVY 600
Query: 593 WSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKACI 641
WS LTLISVHV+MML+AG+FRIRNALP PVWTYP +Y++FHTYSI+ +
Sbjct: 601 WSTLTLISVHVIMMLAAGHFRIRNALPKPVWTYPFAYISFHTYSIEGLL 649
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4063751|gb|AAC98459.1| putative ABC transporter [Arabidopsis thaliana] gi|20197954|gb|AAM15328.1| putative ABC transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1046 bits (2704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/649 (80%), Positives = 569/649 (87%), Gaps = 37/649 (5%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEIQSQSD YRSSSSSASSP SRVPSS+FFY+RKPGSLRQPISFEDSPEWEDT DV++R
Sbjct: 1 MEEIQSQSDLYRSSSSSASSPTSRVPSSHFFYVRKPGSLRQPISFEDSPEWEDTPDVDLR 60
Query: 60 VEE---GGDSIN-AATTPASPSLSKLNSGSLPSPPLPEGAA---VARKIAGASVVWKDLT 112
+E+ GGDSIN A TTP SPSLSK+NSGS+ SPP+PEG A V RKIAGAS+ WKDLT
Sbjct: 61 MEDEAGGGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGTGVVRKIAGASIAWKDLT 120
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172
VT+KGKR+YSDKVVKSSNGYA PGTMTVIMGPAKSGKSTLLRA+AGRLP SA+MYGEVFV
Sbjct: 121 VTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSAKMYGEVFV 180
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
NG+KS MPYGSYGFVERET LIGSLTVRE+LYYSALLQLPGF Q+++VVEDAI AMSLS
Sbjct: 181 NGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKRSVVEDAIQAMSLS 240
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
DYANKLIGGHCYMKGL GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKK
Sbjct: 241 DYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKK 300
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 352
LAS GCTL+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP
Sbjct: 301 LASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 360
Query: 353 SDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412
SDHFLRAINTDFDRIIAMCK+WQDD+GDFS+VNMDTAVAIRTLEATY+SSADA +VE MI
Sbjct: 361 SDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEATYKSSADADSVEAMI 420
Query: 413 LRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFS 472
++LTE+EG LKSKGKA +ATRVAVLTWRSLL+MSREWKYYWLRLIL MILTL +GT++S
Sbjct: 421 IKLTEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYS 480
Query: 473 GLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQL 532
GLGHSLSSV Y SE SN HSGA VFLLGQ
Sbjct: 481 GLGHSLSSVA-----------------------------IYRSEASNQHSGAFVFLLGQF 511
Query: 533 LSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVY 592
L SIPFLFL+SISSSLVFYF+VGLRD+FSLLMYFVLNFFMCLLVNEGLML +A IW+DVY
Sbjct: 512 LGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCLLVNEGLMLFIACIWRDVY 571
Query: 593 WSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKACI 641
WS LTLISVHV+MML+AG+FRIR ALP PVWTYP +Y++FHTYSI+ +
Sbjct: 572 WSTLTLISVHVIMMLAAGHFRIRTALPKPVWTYPFAYISFHTYSIEGLL 620
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 641 | ||||||
| TAIR|locus:2046203 | 730 | ABCG3 "ATP-binding cassette G3 | 1.0 | 0.878 | 0.756 | 1.4e-259 | |
| TAIR|locus:2030898 | 703 | ABCG11 "ATP-binding cassette G | 0.831 | 0.758 | 0.370 | 1.2e-95 | |
| TAIR|locus:2092960 | 691 | ABCG15 "ATP-binding cassette G | 0.828 | 0.768 | 0.357 | 4.6e-89 | |
| TAIR|locus:2033899 | 687 | ABCG12 "ATP-binding cassette G | 0.834 | 0.778 | 0.351 | 3.3e-86 | |
| TAIR|locus:2033939 | 678 | ABCG13 "ATP-binding cassette G | 0.828 | 0.783 | 0.334 | 1.8e-78 | |
| CGD|CAL0002254 | 579 | orf19.3120 [Candida albicans ( | 0.435 | 0.481 | 0.33 | 2.9e-45 | |
| UNIPROTKB|Q5A0X6 | 579 | CaO19.10632 "Putative uncharac | 0.435 | 0.481 | 0.33 | 2.9e-45 | |
| UNIPROTKB|F1N3L2 | 649 | ABCG5 "Uncharacterized protein | 0.786 | 0.776 | 0.286 | 1e-43 | |
| UNIPROTKB|E1C5B1 | 665 | ABCG2 "Uncharacterized protein | 0.797 | 0.768 | 0.261 | 6.5e-43 | |
| UNIPROTKB|E3LWM9 | 654 | Cre-wht-1 "CRE-WHT-1 protein" | 0.787 | 0.772 | 0.253 | 8.6e-43 |
| TAIR|locus:2046203 ABCG3 "ATP-binding cassette G3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2498 (884.4 bits), Expect = 1.4e-259, P = 1.4e-259
Identities = 491/649 (75%), Positives = 536/649 (82%)
Query: 1 MEEIXXXXXXXXXXXXXXXXXXXXXXXXXFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEI FFY+RKPGSLRQPISFEDSPEWEDT DV++R
Sbjct: 1 MEEIQSQSDLYRSSSSSASSPTSRVPSSHFFYVRKPGSLRQPISFEDSPEWEDTPDVDLR 60
Query: 60 VEE---GGDSIN-AATTPAXXXXXXXXXXXXXXXXXXEGAA---VARKIAGASVVWKDLT 112
+E+ GGDSIN A TTP EG A V RKIAGAS+ WKDLT
Sbjct: 61 MEDEAGGGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGTGVVRKIAGASIAWKDLT 120
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172
VT+KGKR+YSDKVVKSSNGYA PGTMTVIMGPAKSGKSTLLRA+AGRLP SA+MYGEVFV
Sbjct: 121 VTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSAKMYGEVFV 180
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
NG+KS MPYGSYGFVERET LIGSLTVRE+LYYSALLQLPGF Q+++VVEDAI AMSLS
Sbjct: 181 NGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKRSVVEDAIQAMSLS 240
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
DYANKLIGGHCYMKGL GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKK
Sbjct: 241 DYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKK 300
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 352
LAS GCTL+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP
Sbjct: 301 LASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 360
Query: 353 SDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412
SDHFLRAINTDFDRIIAMCK+WQDD+GDFS+VNMDTAVAIRTLEATY+SSADA +VE MI
Sbjct: 361 SDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEATYKSSADADSVEAMI 420
Query: 413 LRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFS 472
++LTE+EG LKSKGKA +ATRVAVLTWRSLL+MSREWKYYWLRLIL MILTL +GT++S
Sbjct: 421 IKLTEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYS 480
Query: 473 GLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQX 532
GLGHSLSSV TRVAA+FVFVSF SLL IAG+P+L+KEIK Y SE SN HSGA VFLLGQ
Sbjct: 481 GLGHSLSSVATRVAAVFVFVSFASLLGIAGIPSLLKEIKIYRSEASNQHSGAFVFLLGQF 540
Query: 533 XXXXXXXXXXXXXXXXXXXXXVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVY 592
VGLRD+FSLLMYFVLNFFMCLLVNEGLML +A IW+DVY
Sbjct: 541 LGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCLLVNEGLMLFIACIWRDVY 600
Query: 593 WSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKACI 641
WS LTLISVHV+MML+AG+FRIR ALP PVWTYP +Y++FHTYSI+ +
Sbjct: 601 WSTLTLISVHVIMMLAAGHFRIRTALPKPVWTYPFAYISFHTYSIEGLL 649
|
|
| TAIR|locus:2030898 ABCG11 "ATP-binding cassette G11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
Identities = 201/542 (37%), Positives = 326/542 (60%)
Query: 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163
A + W+DLTV + + V++ GYA PG++T +MGP+ SGKST+L A+A RL +
Sbjct: 48 ARLTWQDLTVMVTMGDGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAAN 107
Query: 164 ARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNV 221
A + G V +NG K+++ +G+ +V ++ LIG+LTVRE ++YSA ++LP +++ +
Sbjct: 108 AFLSGTVLLNGRKTKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRAL 167
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
VE I M L D A+ +IG + +++G+ GE+RRV IA E++MRP +LF+DEP LDS
Sbjct: 168 VERTIIEMGLQDCADTVIG-NWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSA 226
Query: 282 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341
SA + TL+ L+ G T++ +I+Q S+EVF LFDR+ LLS G T++FG+ + F+
Sbjct: 227 SAFFVTQTLRALSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFAQ 286
Query: 342 AGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQD---DHGDFSSVNMDTAVAIRTLEAT 398
AGFPCP +++PSDHFLR IN+DFD++ A K + D + TA AIR L
Sbjct: 287 AGFPCPALRNPSDHFLRCINSDFDKVRATLKGSMKLRFEASDDPLEKITTAEAIRLLVDY 346
Query: 399 YQSSADAAAVETMILRLTEKEGPFLKSKG-KASSATRVAVLTWRSLLIMSREWKYYWLRL 457
Y +S + + +++ +G L S G +AS + LT RS + MSR++ YYWLRL
Sbjct: 347 YHTSDYYYTAKAKVEEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRL 406
Query: 458 ILCMILTLCVGTVFSGLGHSLSSVVTRVA-AIFVFVSFNSLLNIAGVPALMKEIKTYASE 516
++ +++T+C+GT++ +G S S+++ R + A FVF F + ++I G P+ ++++K + E
Sbjct: 407 LIYILVTVCIGTIYLNVGTSYSAILARGSCASFVF-GFVTFMSIGGFPSFVEDMKVFQRE 465
Query: 517 ESNMHSGALVFLLGQXXXXXXXXXXXXXXXXXXXXXXVGLRDEFSLLMYFVLNFFMCLLV 576
N H G F++ VGL F+ ++FVL + + V
Sbjct: 466 RLNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYASVTV 525
Query: 577 NEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYS 636
E LM+ +ASI + I+ + + ML +G+FR+ N +P P W YP+SY++FH ++
Sbjct: 526 VESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFFRLPNDIPKPFWRYPMSYISFHFWA 585
Query: 637 IK 638
++
Sbjct: 586 LQ 587
|
|
| TAIR|locus:2092960 ABCG15 "ATP-binding cassette G15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
Identities = 196/549 (35%), Positives = 324/549 (59%)
Query: 103 GASVVWKDLTVTIKGKRRYSD----KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158
GA + W+DLTV I +SD ++++ NGYA PG + IMGP+ SGKSTLL ++AG
Sbjct: 22 GAYLAWEDLTVVIPN---FSDGPTRRLLQRLNGYAEPGRIMAIMGPSGSGKSTLLDSLAG 78
Query: 159 RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQR 218
RL + M G + +NG K+ + YG +V +E L+G+LTVRE + YSA L+LP +
Sbjct: 79 RLARNVVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTVRETITYSAHLRLPSDMSKE 138
Query: 219 K--NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276
+ ++VE I + L D ++++IG + + +G+ GER+RV IA E++ RP +LF+DEP
Sbjct: 139 EVSDIVEGTIMELGLQDCSDRVIG-NWHARGVSGGERKRVSIALEILTRPQILFLDEPTS 197
Query: 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336
LDS SA ++ L+ +A G T++ +++Q S+EVF LFD + LLS+G +++FGE + +
Sbjct: 198 GLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSGESVYFGEAKSAV 257
Query: 337 QHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQD-DHGDFSS---VNMDTAVAI 392
+ F+ +GFPCP ++PSDHFLR IN+DFD + A K Q +S +N+ T+V
Sbjct: 258 EFFAESGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQETPATSDPLMNLATSVIK 317
Query: 393 RTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSAT---RVAVLTWRSLLIMSRE 449
L Y+ S A + ++ I L+ EG ++ + K S AT ++ LT RS + M R+
Sbjct: 318 ARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIR-KGSEATWWKQLRTLTARSFINMCRD 376
Query: 450 WKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKE 509
YYW R+I +++++ VGT+F +G+S +S++ RV+ F + ++I G P+ ++E
Sbjct: 377 VGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTFMSIGGFPSFLEE 436
Query: 510 IKTYASEESNMHSGALVFLLGQXXXXXXXXXXXXXXXXXXXXXXVGLRDEFSLLMYFVLN 569
+K + E + + G V++L V R FS +F LN
Sbjct: 437 MKVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFSHYAFFCLN 496
Query: 570 FFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISY 629
F + V E LM+VVAS+ + ++T + ++M+++G+FR+ LP W YP+SY
Sbjct: 497 IFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLPDLPKIFWRYPVSY 556
Query: 630 VAFHTYSIK 638
+++ +++I+
Sbjct: 557 ISYGSWAIQ 565
|
|
| TAIR|locus:2033899 ABCG12 "ATP-binding cassette G12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
Identities = 192/547 (35%), Positives = 315/547 (57%)
Query: 103 GASVVWKDLTVTIKG-KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161
GA + W+DLTV I + +++ NG+A PG + IMGP+ SGKSTLL ++AGRL
Sbjct: 21 GAYLAWEDLTVVIPNFSGGPTRRLLDGLNGHAEPGRIMAIMGPSGSGKSTLLDSLAGRLA 80
Query: 162 HSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK-- 219
+ M G + +NG K+ + YG +V +E L+G+LTVRE + YSA L+L + +
Sbjct: 81 RNVIMTGNLLLNGKKARLDYGLVAYVTQEDILMGTLTVRETITYSAHLRLSSDLTKEEVN 140
Query: 220 NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
++VE I + L D A+++IG + + +G+ GER+RV +A E++ RP +LF+DEP LD
Sbjct: 141 DIVEGTIIELGLQDCADRVIG-NWHSRGVSGGERKRVSVALEILTRPQILFLDEPTSGLD 199
Query: 280 SVSALLMMVTLKKLASTGC-TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
S SA ++ L+ +A G T++ +I+Q S+EVF LFD + LLS+G T++FGE+ ++
Sbjct: 200 SASAFFVIQALRNIARDGGRTVVSSIHQPSSEVFALFDDLFLLSSGETVYFGESKFAVEF 259
Query: 339 FSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSS----VNMDTAVAIRT 394
F+ AGFPCP ++PSDHFLR IN+DFD + A K Q ++ +N+ T+
Sbjct: 260 FAEAGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIRETPATSDPLMNLATSEIKAR 319
Query: 395 LEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSAT---RVAVLTWRSLLIMSREWK 451
L Y+ S A + ++ I L EG K S AT ++ LT RS + M R+
Sbjct: 320 LVENYRRSVYAKSAKSRIRELASIEGHHGMEVRKGSEATWFKQLRTLTKRSFVNMCRDIG 379
Query: 452 YYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIK 511
YYW R+++ ++++ CVGT+F +GHS +S++ RV+ F + ++I G P+ ++E+K
Sbjct: 380 YYWSRIVIYIVVSFCVGTIFYDVGHSYTSILARVSCGGFITGFMTFMSIGGFPSFIEEMK 439
Query: 512 TYASEESNMHSGALVFLLGQXXXXXXXXXXXXXXXXXXXXXXVGLRDEFSLLMYFVLNFF 571
+ E + + G V+++ V R S +F LN F
Sbjct: 440 VFYKERLSGYYGVSVYIISNYVSSFPFLVAIALITGSITYNMVKFRPGVSHWAFFCLNIF 499
Query: 572 MCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVA 631
+ V E LM+VVAS+ + ++T + ++M+++G+FR+ LP W YPIS+++
Sbjct: 500 FSVSVIESLMMVVASLVPNFLMGLITGAGIIGIIMMTSGFFRLLPDLPKVFWRYPISFMS 559
Query: 632 FHTYSIK 638
+ +++I+
Sbjct: 560 YGSWAIQ 566
|
|
| TAIR|locus:2033939 ABCG13 "ATP-binding cassette G13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
Identities = 185/553 (33%), Positives = 304/553 (54%)
Query: 106 VVWKDLTVTIKGKRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164
V W+DLTV I + K ++ NG P + IMGP+ SGKSTLL A+AGRL +
Sbjct: 10 VAWEDLTVVIPNFGEGATKRLLNGVNGCGEPNRILAIMGPSGSGKSTLLDALAGRLAGNV 69
Query: 165 RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK--NVV 222
M G+V VNG K + +G+ +V +E L+G+LTVRE + YSA L+LP + + ++V
Sbjct: 70 VMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLTREEISDIV 129
Query: 223 EDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
E I M L + +++ IG + +++G+ GE++R+ IA E++ +P +LF+DEP LDS S
Sbjct: 130 EATITDMGLEECSDRTIG-NWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGLDSAS 188
Query: 283 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNA 342
A ++ L+ +AS+G T++ +I+Q S EVF LFD + LLS G T++FGE + + F A
Sbjct: 189 AFFVVQILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAESATKFFGEA 248
Query: 343 GFPCPIMQSPSDHFLRAINTDFDRIIA-MCKSWQDDHGDFS------SVN----MD---T 388
GFPCP ++PSDHFLR +N+DFD + A + +S + + FS + N +D T
Sbjct: 249 GFPCPSRRNPSDHFLRCVNSDFDNVTAALVESRRINDSSFSLHQLHETTNTLDPLDDIPT 308
Query: 389 AVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSAT---RVAVLTWRSLLI 445
A TL ++ S AAA I + G + K K S ++ +LT RS +
Sbjct: 309 AEIRTTLVRKFKCSLYAAASRARIQEIASIVGIVTERK-KGSQTNWWKQLRILTQRSFIN 367
Query: 446 MSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPA 505
MSR+ YYW+R+ + ++L++CVG++F +G + ++V++ A F + ++I G +
Sbjct: 368 MSRDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMAGFMTFMSIGGFQS 427
Query: 506 LMKEIKTYASEESNMHSGALVFLLGQXXXXXXXXXXXXXXXXXXXXXXVGLRDEFSLLMY 565
++E+K ++ E N H G V+ + V + S Y
Sbjct: 428 FIEEMKVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIYMVRFQSGGSHFFY 487
Query: 566 FVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTY 625
L+ + E M+++AS+ + ++ +M+LSAG+FR LP W Y
Sbjct: 488 NCLDLICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSAGFFRFFPDLPMVFWRY 547
Query: 626 PISYVAFHTYSIK 638
P+SY+ + ++++
Sbjct: 548 PVSYINYGAWALQ 560
|
|
| CGD|CAL0002254 orf19.3120 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 375 (137.1 bits), Expect = 2.9e-45, Sum P(2) = 2.9e-45
Identities = 99/300 (33%), Positives = 162/300 (54%)
Query: 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARM 166
W ++++T++ + D + S + G M IMGP+ GKSTLL +A R P S+ +
Sbjct: 8 WSNISLTLQNGKTILDDIYGSVSA----GEMLAIMGPSGCGKSTLLNVLAYRTSPRSSTL 63
Query: 167 YGEVFVNGAKSEMPYGSY--GFVERETTLIGSLTVREYLYYSALLQLPGFF-CQRKNVVE 223
G +F+N ++ + +VE+E +LIGSLTV E + YSA Q G +K +V
Sbjct: 64 EGGIFINNERATLNKIKQLSSYVEQEDSLIGSLTVSETVDYSA--QFAGIDKAHKKELVS 121
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
I ++ L A IG KG+ G++RRV IA +++ P +LF+DEP LDSV++
Sbjct: 122 KTIKSLGLEGQAMSKIGTPI-QKGISGGQKRRVSIASQIITSPSILFLDEPTSGLDSVAS 180
Query: 284 LLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNA 342
++ T+KK+A ++ +I+Q ST F LFD++ LS G T++ G +++F++
Sbjct: 181 REVISTIKKIAKRENMVIICSIHQPSTYTFELFDKVMFLSKGRTVYNGAVSNVVKYFNSI 240
Query: 343 GFPCPIMQSPSDHFLRAINTDF--DRIIA--MCKSWQDDHGDFSSVNMDTAVAIRTLEAT 398
G P +P+++ L INTDF D + + W GD V ++ ++ EAT
Sbjct: 241 GHTMPPYINPAEYVLDLINTDFQGDSSVLDDLVSKWNS--GDVHKVGTES---VQLTEAT 295
|
|
| UNIPROTKB|Q5A0X6 CaO19.10632 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 375 (137.1 bits), Expect = 2.9e-45, Sum P(2) = 2.9e-45
Identities = 99/300 (33%), Positives = 162/300 (54%)
Query: 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARM 166
W ++++T++ + D + S + G M IMGP+ GKSTLL +A R P S+ +
Sbjct: 8 WSNISLTLQNGKTILDDIYGSVSA----GEMLAIMGPSGCGKSTLLNVLAYRTSPRSSTL 63
Query: 167 YGEVFVNGAKSEMPYGSY--GFVERETTLIGSLTVREYLYYSALLQLPGFF-CQRKNVVE 223
G +F+N ++ + +VE+E +LIGSLTV E + YSA Q G +K +V
Sbjct: 64 EGGIFINNERATLNKIKQLSSYVEQEDSLIGSLTVSETVDYSA--QFAGIDKAHKKELVS 121
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
I ++ L A IG KG+ G++RRV IA +++ P +LF+DEP LDSV++
Sbjct: 122 KTIKSLGLEGQAMSKIGTPI-QKGISGGQKRRVSIASQIITSPSILFLDEPTSGLDSVAS 180
Query: 284 LLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNA 342
++ T+KK+A ++ +I+Q ST F LFD++ LS G T++ G +++F++
Sbjct: 181 REVISTIKKIAKRENMVIICSIHQPSTYTFELFDKVMFLSKGRTVYNGAVSNVVKYFNSI 240
Query: 343 GFPCPIMQSPSDHFLRAINTDF--DRIIA--MCKSWQDDHGDFSSVNMDTAVAIRTLEAT 398
G P +P+++ L INTDF D + + W GD V ++ ++ EAT
Sbjct: 241 GHTMPPYINPAEYVLDLINTDFQGDSSVLDDLVSKWNS--GDVHKVGTES---VQLTEAT 295
|
|
| UNIPROTKB|F1N3L2 ABCG5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 155/541 (28%), Positives = 262/541 (48%)
Query: 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY 167
W D+ +++++ +++K + Y G + I+G + SGK+TLL A++GRL + +
Sbjct: 52 WWDIA---SRRQKWTRQILKDVSLYVESGQIMCILGSSGSGKTTLLDAMSGRLRRTGTLL 108
Query: 168 GEVFVNGAK--SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL----PGFFCQRKNV 221
GEVFVNG + E + +V + TL+ +LTVRE L Y+ALL + FF Q+K
Sbjct: 109 GEVFVNGQELHREQFQDCFSYVLQSDTLLSNLTVRETLNYTALLAIRRGSQSFF-QKK-- 165
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
VE + +SLS A++LIG + + G+ GERRRV IA +L+ P V+ DEP LD +
Sbjct: 166 VEAVMTELSLSHVADQLIGNYSF-GGISHGERRRVSIAAQLLQDPKVMLFDEPTTGLDCM 224
Query: 282 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341
+A ++V L +LA ++ TI+Q +E+F LFD+I +LS G +F G + L FS
Sbjct: 225 TANQIVVLLAELARRDRIVILTIHQPRSELFQLFDKIAILSCGELVFCGTPVEMLDFFSG 284
Query: 342 AGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQS 401
G+PCP +P D ++ + D +S + + + V M VA R A Y
Sbjct: 285 CGYPCPEHSNPFDFYMDLTSVD-------TQSKEREIETYRRVQM-IEVAYRE-SAMYHK 335
Query: 402 SADAAAVETMILRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCM 461
+ +A T L+ K PF K++ + +++ VL R + + R +RL +
Sbjct: 336 TMEAIE-RTKHLKTLPKI-PF-KTRDSPGALSKLCVLLRRVMRNLLRNKLAVTMRLTQNL 392
Query: 462 ILTLCVGTVFSGLGHSL--SSVVTRVAAIFVFVS---FNSLLNIAGVPALMKEIKTYASE 516
I+ L + LG + +V RV ++ FV + +LN + +++ + S+
Sbjct: 393 IMGLFIIFFLLRLGKDVLKGAVQDRVGLLYQFVGAMPYTGMLNAVTLFPVLRAVSDQESQ 452
Query: 517 ESNMHSGALVFLLGQXXXXXXXXXXXXXXXXXXXXXXVGLRDEFSLLMYFVLNFFMCLLV 576
+ H + LL + L E + YF + L+
Sbjct: 453 DGLYHKWQM--LLAYMLHVLPFSVTATLVCCSVCYWTLALYPEAARFAYFSVALLAPHLI 510
Query: 577 NEGLMLVVASIWKD--VYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHT 634
E L LV+ + ++ V S++ L+S+ V+M +G+ +RN P+ + Y F
Sbjct: 511 GEFLSLVLLGVIQNPNVVNSVVALLSIAGVLM-GSGF--VRNIQEMPIPFKILGYFTFQK 567
Query: 635 Y 635
Y
Sbjct: 568 Y 568
|
|
| UNIPROTKB|E1C5B1 ABCG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 455 (165.2 bits), Expect = 6.5e-43, P = 6.5e-43
Identities = 140/535 (26%), Positives = 253/535 (47%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177
++ K++ + G PG + I+GP SGKS+LL +A R A + GEV ++G
Sbjct: 58 RKTVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAAR-KDPAGLSGEVLIDGIPQ 115
Query: 178 EMPYGSY-GFVERETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSDY 234
+ G+V ++ ++G++TVRE L++SA L+LP F +++ V I + LS
Sbjct: 116 PPNFKCISGYVVQDDVVMGTMTVRENLHFSAALRLPSSISFQEKEERVTQIIGELGLSKV 175
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
A+ +G ++G+ GER+R I EL+ P VLF+DEP LD+ +A +++ LKKL+
Sbjct: 176 ADAKVGTEL-IRGVSGGERKRTNIGMELITEPPVLFLDEPTTGLDASTANAVLILLKKLS 234
Query: 295 STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSD 354
G T++F+I+Q +F LFD + LL+ G L+ G L++FS+ G+ C +P+D
Sbjct: 235 RRGRTIIFSIHQPRYSIFKLFDSLTLLALGKVLYHGPAKQALEYFSSIGYECEPFNNPAD 294
Query: 355 HFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILR 414
FL IN D + A ++DH + + + TL Y +S+ + + + +
Sbjct: 295 FFLDIINGDSTAVAAS----KEDHKPADTGKGKLSSVVDTLHQKYLNSSLYESTKEALGK 350
Query: 415 LTEKEGPFLKSKGKASSATRV----AVLTW---RSLLIMSREWKYYWLRLILCMILTLCV 467
+ ++G K K T L W RSL + R + ++ + +IL L V
Sbjct: 351 VEREQGRKKKVSKKGHEITYANGFFTQLYWVSKRSLKNLIRNPQASIAQIAVTVILALVV 410
Query: 468 GTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLN-IAGVPALMKEIKTYASE-ESNMHSGAL 525
G +F G+ S + RV ++F FV+ N + ++ + +++ K + + S + +
Sbjct: 411 GAIFFGVKLDESGIQNRVGSLF-FVTTNQCFSSVSAIELFIRDKKLFVHQYTSGYYRVSA 469
Query: 526 VFLLGQXXXXXXXXXXXXXXXXXXXXXXVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVA 585
FL +G + +F+L M + L ++
Sbjct: 470 YFLALMLGDLLPMRTAPAIIFSCITYWMIGFQAIAGRFFFFMLALVMVSYTATAMSLAIS 529
Query: 586 SIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPV-WTYPISYVAFHTYSIKA 639
+ + V + L + V+M++ +G + N LP + W + Y + Y + A
Sbjct: 530 AGMEVVAVANLLITICFVLMLIFSGL--LVN-LPSVMGWLNWLKYFSIPRYGLTA 581
|
|
| UNIPROTKB|E3LWM9 Cre-wht-1 "CRE-WHT-1 protein" [Caenorhabditis remanei (taxid:31234)] | Back alignment and assigned GO terms |
|---|
Score = 453 (164.5 bits), Expect = 8.6e-43, P = 8.6e-43
Identities = 133/525 (25%), Positives = 246/525 (46%)
Query: 119 RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE 178
+R +++ + +G A G + IMG + +GK+TL+ + R + + G + ++G ++
Sbjct: 59 KRQVKEILHNVSGMAESGKLLAIMGSSGAGKTTLMNVLTSRNLTNLDVQGSILIDGKRAN 118
Query: 179 M--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC---QRKNVVEDAIHAMSLSD 233
FV++ +G++T RE+L + A L++ + +R+ V + M L
Sbjct: 119 KWKIREMSAFVQQHDMFVGTMTAREHLQFMARLRMGSEYYSEEERETRVNQVLTQMGLQK 178
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
A+ +IG +KGL CGE++R+ A E++ P +LF DEP LD+ A ++ L++L
Sbjct: 179 CADTVIGIPNQLKGLSCGEKKRLAFASEILTCPKILFCDEPTSGLDAFMAGHVVQALRRL 238
Query: 294 ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPS 353
A G T++ TI+Q S++V+ LF+ +CL++ G ++ G + F GFPCP +P+
Sbjct: 239 ADNGMTVIITIHQPSSQVYSLFNNVCLMACGRVIYLGPGDQAVPLFERCGFPCPAYYNPA 298
Query: 354 DHFLRAINT-DFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412
DH +R + D DR +M K+ F S ++ +V ++++ A + ET
Sbjct: 299 DHLIRTLAVIDSDRATSM-KTISKIRQGFLSTDLGQSVLAIGNANKLRAASFATSSET-- 355
Query: 413 LRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFS 472
+EK F AS T+ L WRS L + R+ +RL+ +I L G VF
Sbjct: 356 ---SEKTKTFFNQDYNASFWTQFRALFWRSYLTVIRDPNLLSVRLLQIIITALITGLVFF 412
Query: 473 GLGHSLSSVVTRVAAIFVFV-SFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQ 531
+ +++++ +F + + N +L VP + E+ E +N + L +
Sbjct: 413 QTPVTPATIISVNGIMFNHIRNMNFMLQFPNVPVITAELPIVLRENANGVYRTSAYFLAK 472
Query: 532 XXXXXXXXXXXXXXXXXXXXXXVGLRDEFSLLMYFVLNFFMCLLVNEGLML--VVASIWK 589
GL F Y + L+ N + + VA+I+
Sbjct: 473 NIAELPQYIILPVLYNTIVYWLSGLYPNF--WNYCFASLVTILITNVAISISYAVATIFA 530
Query: 590 DVYWSILTLISVHVV-MMLSAGYFRIRNALPGP-VWTYPISYVAF 632
+ + +T++ + VV +M G+F +A+P W +SY +
Sbjct: 531 NTDVA-MTVLPIFVVPIMAFGGFFITFDAIPSYFTWLSSLSYFKY 574
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZUU9 | AB3G_ARATH | No assigned EC number | 0.8397 | 1.0 | 0.8780 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 641 | |||
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-75 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 6e-70 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-50 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-47 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-43 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-42 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-42 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-36 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-31 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-27 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 7e-24 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 4e-23 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 7e-23 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-22 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 6e-22 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-21 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-21 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-21 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-21 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 6e-21 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-20 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-20 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-19 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-19 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 9e-19 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-18 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-18 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-18 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-18 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-18 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-17 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-17 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-17 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 4e-17 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-17 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-17 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-16 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-16 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-16 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-16 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 7e-16 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 7e-16 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 8e-16 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-15 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-15 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-15 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-15 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-15 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-15 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 5e-15 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 6e-15 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 7e-15 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-14 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-14 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-14 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 5e-14 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 6e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 7e-14 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 7e-14 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 9e-14 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-13 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-13 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-13 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-13 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-13 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-13 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 5e-13 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 7e-13 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 8e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 8e-13 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 8e-13 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-12 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-12 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-12 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-12 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-12 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-12 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 6e-12 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 6e-12 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-12 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 8e-12 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 8e-12 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 8e-12 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-11 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-11 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-11 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 4e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 4e-11 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 6e-11 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 7e-11 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-10 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-10 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-10 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-10 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 4e-10 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-10 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 5e-10 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-10 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 6e-10 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 6e-10 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 6e-10 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 7e-10 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 8e-10 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-09 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-09 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-09 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-09 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-09 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-09 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-09 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-09 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-09 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-09 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-09 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 5e-09 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 6e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-09 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 9e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-08 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-08 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-08 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-08 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-08 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-08 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-08 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 5e-08 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 5e-08 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 6e-08 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 7e-08 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 7e-08 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 7e-08 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 7e-08 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 7e-08 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 7e-08 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-07 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-07 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-07 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 4e-07 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-07 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 5e-07 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 5e-07 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-07 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 6e-07 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 6e-07 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 7e-07 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 8e-07 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 9e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 9e-07 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-06 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-06 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-06 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-06 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-06 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-06 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-06 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-06 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 5e-06 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 6e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 6e-06 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 7e-06 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 7e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 7e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 7e-06 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 8e-06 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 8e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 8e-06 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 9e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 9e-06 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-05 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-05 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-05 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-05 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-05 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-05 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-05 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-05 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-05 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-05 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-05 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 3e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-05 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 5e-05 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 5e-05 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 6e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 7e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 7e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 7e-05 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 7e-05 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 7e-05 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 7e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-05 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 8e-05 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 9e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-04 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-04 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-04 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-04 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-04 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 3e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-04 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-04 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 3e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 5e-04 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 6e-04 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 6e-04 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 7e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 0.001 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.001 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.001 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 0.001 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.001 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 0.001 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.001 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 0.001 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 0.001 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.001 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 0.002 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 0.002 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 0.002 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 0.002 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 0.002 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.002 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.003 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 0.003 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 0.003 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.003 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 0.003 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.003 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 0.004 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 0.004 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 0.004 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.004 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 0.004 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 238 bits (611), Expect = 3e-75
Identities = 87/231 (37%), Positives = 129/231 (55%), Gaps = 40/231 (17%)
Query: 103 GASVVWKDLTVTIKGKR-RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161
G ++ +++LTVT+K + +++K+ +G A PG +T IMGP+ +GKSTLL A+AGR
Sbjct: 1 GVTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR- 59
Query: 162 HSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK 219
+ GEV +NG + G+V ++ L +LTVRE L ++A L
Sbjct: 60 TGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL---------- 109
Query: 220 NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
+GL GER+RV IA ELV P +LF+DEP LD
Sbjct: 110 --------------------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
Query: 280 SVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
S SAL +M L++LA TG T++ +I+Q S+E+F LFD++ LLS G ++FG
Sbjct: 144 SSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 238 bits (608), Expect = 6e-70
Identities = 134/534 (25%), Positives = 243/534 (45%), Gaps = 47/534 (8%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--- 174
+ R ++K+ +G A PG + +MG + +GK+TL+ A+A R P + G V +NG
Sbjct: 33 RERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI 92
Query: 175 AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLS 232
EM S +V+++ I +LTVRE+L + A L++P +++ V++ + A+ L
Sbjct: 93 DAKEMRAIS-AYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR 151
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
AN IG +KGL GER+R+ A EL+ P +LF DEP LDS A ++ LK
Sbjct: 152 KCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKG 211
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 352
LA G T++ TI+Q S+E+F LFD+I L++ G + G + FS+ G PCP +P
Sbjct: 212 LAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNP 271
Query: 353 SDHFLRAI-------NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADA 405
+D +++ + N +RI +C S+ S + D V
Sbjct: 272 ADFYVQVLAVIPGSENESRERIEKICDSFAV-----SDIGRDMLVNTNLWSGKAGGLVKD 326
Query: 406 AAVETMILRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTL 465
+ AS T+ L RS L + R+ +RLI M+ +
Sbjct: 327 SENME-------------GIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAI 373
Query: 466 CVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGV--------PALMKEIKTYASEE 517
+G ++ G G + V A+F+F++ + N+ V P ++E ++
Sbjct: 374 LIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRV 433
Query: 518 SNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVN 577
S + L + ++ +P ++ + + Y+++GLR + + F+ + V
Sbjct: 434 SA-------YFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVA 486
Query: 578 EGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPV-WTYPISYV 630
+++ + ++ + +L G+F +++P W +S+
Sbjct: 487 TSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWF 540
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 2e-50
Identities = 83/228 (36%), Positives = 127/228 (55%), Gaps = 12/228 (5%)
Query: 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY 167
W D+ + K +Y+ +++ + + G + I+G + SGK+TLL AI+GR+
Sbjct: 6 WWDVGLKAKNWNKYA-RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTS 64
Query: 168 GEVFVNGAKS---EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVV 222
G++ NG + +V ++ L+ LTVRE L Y+A+L+LP RK V
Sbjct: 65 GQILFNGQPRKPDQFQK-CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRV 123
Query: 223 EDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
ED + L D A IG +KG+ GERRRV IA +L+ P VL +DEP LDS +
Sbjct: 124 ED----VLLRDLALTRIG-GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT 178
Query: 283 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
AL ++ TL +LA ++ TI+Q +++F LFDRI LLS+G ++ G
Sbjct: 179 ALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 2e-47
Identities = 138/559 (24%), Positives = 243/559 (43%), Gaps = 58/559 (10%)
Query: 108 WKDLTVTI---KGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164
W++LT + K KR + V +G+ PGT+T +MG + +GK+TLL +A R+
Sbjct: 762 WRNLTYEVKIKKEKRVILNNV----DGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGV 817
Query: 165 RMYGEVFVNGAKSEMPYG-SYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNV 221
G+ VNG + + S G+V+++ + + TVRE L +SA L+ P ++
Sbjct: 818 ITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEY 877
Query: 222 VEDAIHAMSLSDYANKLIG--GHCYMKGLPCGERRRVRIARELVMRPHVL-FIDEPLYHL 278
VE+ I + + YA+ ++G G +GL +R+R+ I ELV +P +L F+DEP L
Sbjct: 878 VEEVIKLLEMESYADAVVGVPG----EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGL 933
Query: 279 DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG-NTLFFGE------ 331
DS +A + ++KLA G +L TI+Q S +F FDR+ LL G T++FG+
Sbjct: 934 DSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSH 993
Query: 332 TLACLQHFSNAGFP-CPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAV 390
T+ + +F G P CP +P++ L I + N D
Sbjct: 994 TI--INYFEKHGAPKCPEDANPAEWMLEVIGA----------------APGAHANQDYHE 1035
Query: 391 AIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREW 450
R + +E + + + P SK AS + ++ WR+ R
Sbjct: 1036 VWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTP 1095
Query: 451 KYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEI 510
Y + + L + L +G F +G SL + ++ A+F+ + L +P + +
Sbjct: 1096 DYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQR 1155
Query: 511 KTYASEE--SNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFS------- 561
Y E S S L F+ Q+ IP+ + ++Y+ VG S
Sbjct: 1156 DLYEVRERPSRTFS-WLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHE 1214
Query: 562 --LLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALP 619
+L + + F G M++ + D + +L+ + + G + +P
Sbjct: 1215 RGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLL--FTMCLSFCGVLAPPSRMP 1272
Query: 620 GP-VWTYPISYVAFHTYSI 637
G ++ Y S + ++
Sbjct: 1273 GFWIFMYRCSPFTYLVQAL 1291
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 1e-43
Identities = 146/564 (25%), Positives = 257/564 (45%), Gaps = 54/564 (9%)
Query: 99 RKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158
++I G D T I+ + ++ G A PG + ++GP+ SGKSTLL A+AG
Sbjct: 62 KRILGHKPKISDETRQIQER-----TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116
Query: 159 RLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ 217
R+ G + N K GFV ++ L LTVRE L + +LL+LP +
Sbjct: 117 RI-QGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTK 175
Query: 218 RKN--VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275
++ V E I + L+ N +IG + +++G+ GER+RV IA E+++ P +L +DEP
Sbjct: 176 QEKILVAESVISELGLTKCENTIIG-NSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 234
Query: 276 YHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335
LD+ +A +++TL LA G T++ +++Q S+ V+ +FD + +LS G LFFG+
Sbjct: 235 SGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDA 294
Query: 336 LQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTL 395
+ +F + GF +P+D L N +C++ + +V + TL
Sbjct: 295 MAYFESVGFSPSFPMNPADFLLDLAN-------GVCQTDGVSEREKPNVKQSLVASYNTL 347
Query: 396 EATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSATRVAVLTWRSLL--IMSREWK-- 451
A AA+E S + S+ R+++ TW + ++ R K
Sbjct: 348 LAPKVK----AAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKER 403
Query: 452 ----YYWLRLILCMILTLCVGTVFSGL--GHS-LSSVVTRVAAIF-------VFVSFNSL 497
+ LR + + + +GL HS V R+ +F VF SFNS+
Sbjct: 404 KHESFNTLR-----VFQVIAAALLAGLMWWHSDFRDVQDRLGLLFFISIFWGVFPSFNSV 458
Query: 498 LNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLR 557
A+ +K AS + S + + +++ +P ++ V Y++ GL+
Sbjct: 459 FVFPQERAIF--VKERASGMYTLSS----YFMARIVGDLPMELILPTIFLTVTYWMAGLK 512
Query: 558 DEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNA 617
E + +L +LV++GL L + + D + T+++V ++ + G F +
Sbjct: 513 PELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKAS-TIVTVTMLAFVLTGGFYVHKL 571
Query: 618 LPGPVWTYPISYVAFHTYSIKACI 641
W I Y++ YS + I
Sbjct: 572 PSCMAW---IKYISTTFYSYRLLI 592
|
Length = 659 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 1e-42
Identities = 80/232 (34%), Positives = 124/232 (53%), Gaps = 44/232 (18%)
Query: 103 GASVVWKDL--TVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160
G+ + WK+L TV +KG +R +++ + +GY PGT+T +MG + +GK+TLL +AGR
Sbjct: 1 GSVLTWKNLNYTVPVKGGKR---QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR- 56
Query: 161 PHSARMYGEVFVNGAKSEMPYGSY-GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK 219
+ + GE+ +NG + + G+VE++ +LTVRE L +SALL
Sbjct: 57 KTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL---------- 106
Query: 220 NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
+GL +R+R+ I EL +P +LF+DEP LD
Sbjct: 107 --------------------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLD 140
Query: 280 SVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL-SNGNTLFFG 330
S +A ++ LKKLA +G +L TI+Q S +F FDR+ LL G T++FG
Sbjct: 141 SQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 3e-42
Identities = 137/566 (24%), Positives = 226/566 (39%), Gaps = 62/566 (10%)
Query: 106 VVWKDLTVTIKGKRRYSD----KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161
+ K LT + +++ D ++K +G PG +TV++G SG STLL+ IA
Sbjct: 53 ALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTD 112
Query: 162 HSARMY-GEVFVNG-AKSEMPYGSYGFV----ERETTLIGSLTVREYLYYSALLQLPGFF 215
G + +G E+ G V E + LTV E L ++A + P
Sbjct: 113 GFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHF-PHLTVGETLDFAARCKTPQ-- 169
Query: 216 CQRKNVVEDAIHAMSLSDYANKLIG-GHCY--------MKGLPCGERRRVRIARELVMRP 266
R + V +A ++D G H ++G+ GER+RV IA +
Sbjct: 170 -NRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGA 228
Query: 267 HVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
+ D LDS +AL + LK A+ T L I Q S + + LFD++ +L G
Sbjct: 229 KIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGY 288
Query: 326 TLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVN 385
++FG Q+F GF CP Q+ +D FL ++ + +R I
Sbjct: 289 QIYFGPADKAKQYFEKMGFKCPDRQTTAD-FLTSLTSPAERQI-----KPGYEKKVPRTP 342
Query: 386 MDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSATRVA--------- 436
+ R Q + KE K S TR +
Sbjct: 343 QEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSM 402
Query: 437 ---VLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIF---V 490
R+ L M + + +I+ L + +VF L + S +R A+F +
Sbjct: 403 QVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAIL 462
Query: 491 FVSFNSLLNIA----GVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISS 546
F +F+SLL IA P + K + YA H A + ++S IPF + S+
Sbjct: 463 FNAFSSLLEIASMYEARPIVEKH-RKYAL----YHPSA--DAIASIISEIPFKIIESVVF 515
Query: 547 SLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMM 606
+++ YF+V R +++L F+C L L + ++ K + S + +++
Sbjct: 516 NIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTL--SEAMTPAAILLLA 573
Query: 607 LS--AGYFRIRNALPGPVWTYPISYV 630
LS G+ R ++ G W+ I YV
Sbjct: 574 LSIYTGFAIPRPSMLG--WSKWIYYV 597
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 1e-36
Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 18/243 (7%)
Query: 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR 165
+ ++LT G + + + PG + ++GP +GK+TLL+ +AG L ++
Sbjct: 5 IEVRNLTKKYGGDKT----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS- 59
Query: 166 MYGEVFVNG----AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV 221
GE+ V G + G+V +E +L LTVRE L + A L + +
Sbjct: 60 --GEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL-SKEEAEER 116
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
+E+ + L D ANK + + L G ++R+ IA L+ P +L +DEP LD
Sbjct: 117 IEELLELFGLEDKANKKV------RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 282 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341
S + L++LA G + E L DR+ +L++G + G + F
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230
Query: 342 AGF 344
G
Sbjct: 231 KGV 233
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-31
Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 36/230 (15%)
Query: 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR 165
+ W++++ T GK R ++K +G PG M +++G SG STLL+A+A R +
Sbjct: 4 LSWRNISFT-TGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVS 62
Query: 166 MYGEVFVNGAKS----EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV 221
+ G++ NG E G +V E +LTVRE L ++ +
Sbjct: 63 VEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK----------- 111
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
G+ +++G+ GER+RV IA LV R VL D LDS
Sbjct: 112 -------------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152
Query: 282 SALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
+AL ++ ++ +A T ++ Q+S E++ LFD++ +L G +++G
Sbjct: 153 TALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 4e-27
Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 25/238 (10%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMY 167
++LTV+ + V++ + G +T ++GP +GKSTLL+AI G L P S
Sbjct: 8 ENLTVSYGNRP-----VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS---- 58
Query: 168 GEVFVNG--AKSEMPYGSYGFVERETTLIGS--LTVREYLY---YSALLQLPGFFCQRKN 220
GE+ + G + G+V +++++ S +TV++ + Y + K
Sbjct: 59 GEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118
Query: 221 VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
V++A+ + + D ++ IG L G+++RV +AR L P +L +DEP +D
Sbjct: 119 KVDEALERVGMEDLRDRQIGE------LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDV 172
Query: 281 VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
+ LK+L G T+L + V FDR+ L N + + G L
Sbjct: 173 AGQKEIYDLLKELRQEGKTVL-MVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLTE 228
|
Length = 254 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 99.5 bits (249), Expect = 7e-24
Identities = 68/232 (29%), Positives = 107/232 (46%), Gaps = 31/232 (13%)
Query: 109 KDLTVTIKGKRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY 167
+DLTV Y V++ + PG I+GP +GKSTLL+AI G L ++
Sbjct: 3 EDLTV------SYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTS--- 53
Query: 168 GEVFVNGAKSEMPYGSYGFV-ERETTLIGS-LTVREYLYYSALLQLPGFF----CQRKNV 221
G + V G E G+V +R + ++VR+ + L G F K
Sbjct: 54 GSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRD-VVLMGLYGHKGLFRRLSKADKAK 112
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
V++A+ + LS+ A++ IG L G+++RV +AR LV P +L +DEP +D
Sbjct: 113 VDEALERVGLSELADRQIGE------LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK 166
Query: 282 SALLMMVTLKKLASTGCTLLFT---INQSSTEVFGLFDRICLLSNGNTLFFG 330
+ + L++L G T+L + V FDR+ LL N + G
Sbjct: 167 TQEDIYELLRELRREGMTILVVTHDLGL----VLEYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 4e-23
Identities = 60/212 (28%), Positives = 94/212 (44%), Gaps = 29/212 (13%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY------GFVE 188
G +T I+GP SGKSTLL+ +AG L + GEV ++G K +V
Sbjct: 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKS---GEVLLDG-KDIASLSPKELAKKLAYVP 82
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKN---VVEDAIHAMSLSDYANKLIGGHCYM 245
+ + LTV E + L F K +VE+A+ + L A++ +
Sbjct: 83 QSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV--DE-- 138
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFT- 303
L GER+RV IAR L +L +DEP HLD + ++ L+ L G T++
Sbjct: 139 --LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVL 196
Query: 304 --INQSSTEVFGLF-DRICLLSNGNTLFFGET 332
+N ++ + D + LL +G + G
Sbjct: 197 HDLNLAA-----RYADHLILLKDGKIVAQGTP 223
|
Length = 258 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 7e-23
Identities = 60/194 (30%), Positives = 92/194 (47%), Gaps = 18/194 (9%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G I+GP+ GKSTLLR IAG ++ GEV ++G P G+V +E L+
Sbjct: 28 KGEFVAILGPSGCGKSTLLRLIAGLEKPTS---GEVLLDGRPVTGPGPDIGYVFQEDALL 84
Query: 195 GSLTVREYLYYSALLQLPGFFC---QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251
LTV + + L L + + ++ + + L+ + +K Y L G
Sbjct: 85 PWLTVLD----NVALGLELRGKSKAEARERAKELLELVGLAGFEDK------YPHQLSGG 134
Query: 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTE 310
R+RV IAR L RP +L +DEP LD+++ + L +L T T+L + E
Sbjct: 135 MRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLL-VTHDVDE 193
Query: 311 VFGLFDRICLLSNG 324
L DR+ +LSN
Sbjct: 194 AVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 1e-22
Identities = 137/601 (22%), Positives = 265/601 (44%), Gaps = 82/601 (13%)
Query: 84 GSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMG 143
GS P LP AR IA +++ + I ++ ++K ++G P MT+++G
Sbjct: 146 GSRALPTLPN---AARNIAESALG----MLGINLAKKTKLTILKDASGIIKPSRMTLLLG 198
Query: 144 PAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPYGSYGFVERETTLIGSLTVRE 201
P SGK+TLL A+AG+L S ++ GE+ NG + +P + ++ + +G +TV+E
Sbjct: 199 PPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE 258
Query: 202 YLYYSALLQLPGF-------FCQR----------------KNVVEDAIHAMSLSDYANKL 238
L +SA Q G +R K + + + ++DY K+
Sbjct: 259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKI 318
Query: 239 IG---------GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 289
+G G ++G+ G+++RV +V LF+DE LDS + ++
Sbjct: 319 LGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKC 378
Query: 290 LKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPI 348
L+++ T T+L ++ Q + E F LFD I LLS G ++ G L+ F + GF CP
Sbjct: 379 LQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPE 438
Query: 349 MQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNM-DTAVAIRTLEATYQSSADAAA 407
+ +D FL+ + + D+ + W D + + +++ + A ++ Q + +
Sbjct: 439 RKGTAD-FLQEVTSKKDQE----QYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSV 493
Query: 408 VETMILRLTEKEGPFLKSKG-KAS------SATRVAVL--TW-RSLLIMSREWKYYWLRL 457
PF KS+ KA+ S ++ +L W + L+M R Y +
Sbjct: 494 -------------PFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKT 540
Query: 458 ILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFV-FVSFNSLLNI----AGVPALMKEIKT 512
+ +I+ TVF L + + A+++ + F+ ++N+ A + +++ +
Sbjct: 541 VQIIIVAAIASTVF--LRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPV 598
Query: 513 YASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFM 572
+ + + F L L IP + S+ ++ Y+ +G E S +L F+
Sbjct: 599 FYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFL 658
Query: 573 CLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALP-GPVWTY---PIS 628
+ G+ ++AS+ + + + V +++ L G+ + +P W Y P+S
Sbjct: 659 IQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLS 718
Query: 629 Y 629
Y
Sbjct: 719 Y 719
|
Length = 1470 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 6e-22
Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 7/205 (3%)
Query: 437 VLTWRSLLIMSREWKY-YWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFN 495
L R L R+ RLI +++ L GTVF L S + R +F + FN
Sbjct: 5 ALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTS-LGGLNRPGLLFFSILFN 63
Query: 496 SLLNIAGV-PALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLV 554
+ ++ G+ P ++E E ++ ++L ++L +P L +I L+ YF+V
Sbjct: 64 AFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVYFMV 123
Query: 555 GLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRI 614
GL L VL + L GL L +A++ + + + ++L +G+F
Sbjct: 124 GLPVSRFFLFLLVL--LLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSGFFIP 181
Query: 615 RNALPGPVWTYPISYVAFHTYSIKA 639
+++PG W I Y+ TY+I+A
Sbjct: 182 VDSMPG--WLQWIYYLNPLTYAIEA 204
|
Length = 210 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 99.2 bits (247), Expect = 2e-21
Identities = 83/323 (25%), Positives = 145/323 (44%), Gaps = 25/323 (7%)
Query: 32 YLRKPGSLRQPISFEDSPEWEDTDVEVRVEEGGDSINAATTPASPSLSKLNSGSLPSPPL 91
YL G + IS E + E E + + N A +S S
Sbjct: 787 YLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSS 846
Query: 92 PEGAAVARKIAGASVVWKDLTVTIKGKRRYSD---------------KVVKSSNGYALPG 136
E A G + + L ++ + D ++++ G PG
Sbjct: 847 LEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPG 906
Query: 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--AKSEMPYGSYGFVERETTLI 194
+T +MG + +GK+TL+ +AGR + G++ ++G K E G+ E+
Sbjct: 907 VLTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHS 965
Query: 195 GSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSDYANKLIG--GHCYMKGLPC 250
+TVRE L YSA L+LP ++ V++ + + L + + ++G G + GL
Sbjct: 966 PQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPG---VTGLST 1022
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310
+R+R+ IA ELV P ++F+DEP LD+ +A ++M T++ TG T++ TI+Q S +
Sbjct: 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1082
Query: 311 VFGLFDRICLLSNGNTLFFGETL 333
+F FD + L+ G + + L
Sbjct: 1083 IFEAFDELLLMKRGGQVIYSGPL 1105
|
Length = 1470 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 2e-21
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 17/201 (8%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA--KSEMPY-GSYGFVERET 191
PG ++GP+ GK+TLLR IAG + GE+ ++G P + G V ++
Sbjct: 25 PGEFLALLGPSGCGKTTLLRLIAGLERPDS---GEILIDGRDVTGVPPERRNIGMVFQDY 81
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251
L LTV E + + L + + V + + + L N+ L G
Sbjct: 82 ALFPHLTVAENIAF-GLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHE------LSGG 134
Query: 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLF-TINQSST 309
+++RV +AR L P +L +DEPL LD+ + LK+L G T ++ T +Q
Sbjct: 135 QQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-- 192
Query: 310 EVFGLFDRICLLSNGNTLFFG 330
E L DRI +++ G + G
Sbjct: 193 EALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 3e-21
Identities = 60/211 (28%), Positives = 88/211 (41%), Gaps = 47/211 (22%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVER---- 189
G +I+GP SGKSTLLR + G L P S GEV V+G E
Sbjct: 26 KGEFVLIVGPNGSGKSTLLRLLNGLLGPTS----GEVLVDG----KDLTKLSLKELRRKV 77
Query: 190 -------ETTLIGSLTVREYLYYSAL-LQLPGFFCQRKNVVEDAIHAMSLSDYANKLI-- 239
+ G TV E + + L LP + + VE+A+ + L ++
Sbjct: 78 GLVFQNPDDQFFGP-TVEEEVAFGLENLGLPEE--EIEERVEEALELVGLEGLRDRSPFT 134
Query: 240 --GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG 297
GG +++RV IA L M P +L +DEP LD ++ LKKL + G
Sbjct: 135 LSGG----------QKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEG 184
Query: 298 CTLLFTINQSST----EVFGLFDRICLLSNG 324
T++ T + L DR+ +L +G
Sbjct: 185 KTIII-----VTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 5e-21
Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 34/207 (16%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGSY-----G 185
G I+GP+ SGKSTLL + G ++ GEV V+G SE ++ G
Sbjct: 29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTS---GEVRVDGTDISKLSEKELAAFRRRHIG 85
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFC-----QRKNVVEDAIHAMSLSDYANKLIG 240
FV + L+ LT E + +LP +R+ E+ + + L D N
Sbjct: 86 FVFQSFNLLPDLTALENV------ELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPS 139
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCT 299
+ G G+++RV IAR L P ++ DEP +LDS + +M L++L G T
Sbjct: 140 ---ELSG---GQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTT 193
Query: 300 LLF-TINQSSTEVFGLFDRICLLSNGN 325
++ T + E+ DRI L +G
Sbjct: 194 IVVVTHDP---ELAEYADRIIELRDGK 217
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 6e-21
Identities = 59/190 (31%), Positives = 90/190 (47%), Gaps = 12/190 (6%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G ++GP+ GKSTLLR IAG ++ GEV V+G P G+V ++ L+
Sbjct: 29 EGEFVALVGPSGCGKSTLLRIIAGLERPTS---GEVLVDGEPVTGPGPDRGYVFQQDALL 85
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254
LTV + + LQ + + E+ + + LS + N Y L G R+
Sbjct: 86 PWLTVLDNVALGLELQGVPK-AEARERAEELLELVGLSGFENA------YPHQLSGGMRQ 138
Query: 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFG 313
RV +AR L + P VL +DEP LD+++ + L + TG T+L + E
Sbjct: 139 RVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLL-VTHDIDEAVF 197
Query: 314 LFDRICLLSN 323
L DR+ +LS
Sbjct: 198 LADRVVVLSA 207
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 1e-20
Identities = 49/213 (23%), Positives = 84/213 (39%), Gaps = 57/213 (26%)
Query: 112 TVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171
+ R + + + G + ++GP SGKSTLLRAIAG L ++ GE+
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS---GEIL 57
Query: 172 VNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSL 231
++G ++ + +R + Y + QL G
Sbjct: 58 IDG--------------KDIAKLPLEELRRRIGY--VPQLSG------------------ 83
Query: 232 SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 291
G+R+RV +AR L++ P +L +DEP LD S ++ L+
Sbjct: 84 -------------------GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLR 124
Query: 292 KLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
+LA G T++ + DR+ +L +G
Sbjct: 125 ELAEEGRTVIIVTHDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 3e-20
Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 21/230 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++LT T K + V + G + ++G +GK+T L+ + G L ++ G
Sbjct: 4 RNLTKTYKKGTKP---AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS---G 57
Query: 169 EVFVNGA--KSEMP--YGSYGFVERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVE 223
++NG +++ S G+ + L LTVRE+L + A L+ LP + K VE
Sbjct: 58 TAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS--EIKEEVE 115
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
+ + L+D ANK + L G +R++ +A L+ P VL +DEP LD S
Sbjct: 116 LLLRVLGLTDKANKRA------RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASR 169
Query: 284 LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333
+ + ++ G +++ T S E L DRI ++S+G G
Sbjct: 170 RAIWDLILEVRK-GRSIILT-THSMDEAEALCDRIAIMSDGKLRCIGSPQ 217
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 2e-19
Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 58/229 (25%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++L+V G+ V+ + G + I+GP +GKSTLL+ +AG L S+ G
Sbjct: 3 ENLSVGYGGRT-----VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS---G 54
Query: 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA 228
E+ ++G + SL+ +E L + + Q A+
Sbjct: 55 EILLDG-----------------KDLASLSPKE------LARKIAYVPQ-------ALEL 84
Query: 229 MSLSDYANKLIG---GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285
+ L+ A++ G GER+RV +AR L P +L +DEP HLD +
Sbjct: 85 LGLAHLADRPFNELSG---------GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIE 135
Query: 286 MMVTLKKLA-STGCTLLFT---INQSSTEVFGLFDRICLLSNGNTLFFG 330
++ L++LA G T++ +N DR+ LL +G + G
Sbjct: 136 LLELLRRLARERGKTVVMVLHDLNL----AARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 5e-19
Identities = 53/223 (23%), Positives = 86/223 (38%), Gaps = 62/223 (27%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++L+ K + + G + ++GP +GK+TL++ I G L + G
Sbjct: 4 RNLSKRYGKK-----TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS---G 55
Query: 169 EVFVNG----AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED 224
E+ V G + E G++ E +L +LTVRE L S
Sbjct: 56 EIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSG----------------- 98
Query: 225 AIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
G ++R+ +A+ L+ P +L +DEP LD S
Sbjct: 99 --------------------------GMKQRLALAQALLHDPELLILDEPTSGLDPESRR 132
Query: 285 LMMVTLKKLASTGCTLLFTINQSS---TEVFGLFDRICLLSNG 324
L++L G T+L SS E L DR+ +L+NG
Sbjct: 133 EFWELLRELKKEGKTILL----SSHILEEAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 9e-19
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 27/228 (11%)
Query: 113 VTIKG-KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171
+ ++ +RY K L M ++GP +GK+TL+R +A P S+ G +
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSS---GTIR 57
Query: 172 VNGAK-SEMP---YGSYGFVERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAI 226
++G + P G++ +E + + TVRE+L Y A L+ +P + K V++ +
Sbjct: 58 IDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPS--KEVKARVDEVL 115
Query: 227 HAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286
++L D A K IG L G RRRV IA+ LV P +L +DEP LD +
Sbjct: 116 ELVNLGDRAKKKIG------SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF 169
Query: 287 MVTLKKLASTGCTLLFTINQSST----EVFGLFDRICLLSNGNTLFFG 330
L +L +L ST +V L +++ +L+ G +F G
Sbjct: 170 RNLLSELGEDRIVIL------STHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 1e-18
Identities = 53/197 (26%), Positives = 78/197 (39%), Gaps = 53/197 (26%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-------SEMPYGSYGFVE 188
G + ++GP+ SGKSTLLR IAG + G + ++G G V
Sbjct: 26 GEIVALLGPSGSGKSTLLRCIAGLEEPDS---GSILIDGEDLTDLEDELPPLRRRIGMVF 82
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248
++ L LTV E N+ GL
Sbjct: 83 QDFALFPHLTVLE------------------NIAL-----------------------GL 101
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQS 307
G+++RV +AR L M P VL +DEP LD ++ + LK L A G T++ +
Sbjct: 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161
Query: 308 STEVFGLFDRICLLSNG 324
E L DR+ +L +G
Sbjct: 162 D-EAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 2e-18
Identities = 60/244 (24%), Positives = 96/244 (39%), Gaps = 51/244 (20%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
G V K + + ++ G + I+GP+ SGKSTLLR I G L
Sbjct: 11 GGRTVLKGVDLDVR------------------RGEILAIIGPSGSGKSTLLRLIVGLLRP 52
Query: 163 SARMYGEVFVNGAK----SEMPYGS----YGFVERETTLIGSLTVRE----YLYYSALLQ 210
+ GEV ++G SE G + + L SLTV E L L
Sbjct: 53 DS---GEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLS 109
Query: 211 LPGFFCQRKNVVEDAIHAMSLSDYANK----LIGGHCYMKGLPCGERRRVRIARELVMRP 266
+ + +V + + A+ L + L GG M ++RV +AR L + P
Sbjct: 110 EE----EIREIVLEKLEAVGLRGAEDLYPAELSGG---M-------KKRVALARALALDP 155
Query: 267 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326
+L DEP LD +++ ++ ++ L + F + DRI +L +G
Sbjct: 156 ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKI 215
Query: 327 LFFG 330
+ G
Sbjct: 216 VAEG 219
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 2e-18
Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 32/227 (14%)
Query: 119 RRYSD-----KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN 173
+R+ D + V + PG +T ++GP +GK+T LR +AG L A G V+
Sbjct: 9 KRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA---GFATVD 65
Query: 174 G---------AKSEMPYGSYGFVERETTLIGSLTVREYL-YYSALLQLPGFFCQRKNVVE 223
G A+ + GFV T L LT RE L Y++ L L G + +E
Sbjct: 66 GFDVVKEPAEARRRL-----GFVSDSTGLYDRLTARENLEYFAGLYGLKG--DELTARLE 118
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
+ + + + ++ +GG G R++V IAR LV P VL +DEP LD ++
Sbjct: 119 ELADRLGMEELLDRRVGG------FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMAT 172
Query: 284 LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
+ +++L + G +LF+ + EV L DR+ +L G ++ G
Sbjct: 173 RALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 2e-18
Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 23/231 (9%)
Query: 112 TVTIKG-KRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGE 169
+ +K ++ + V+K N G V++GP+ GKSTLLR IAG ++ GE
Sbjct: 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS---GE 59
Query: 170 VFVNGAK-SEMP--YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF---CQRKNVVE 223
+ ++G +++P V + L +TV E + + L+L G ++ V+
Sbjct: 60 ILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFG--LKLRGVPKAEIDKR--VK 115
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
+ + L N+ L G+R+RV +AR LV +P V +DEPL +LD+
Sbjct: 116 EVAKLLGLEHLLNRKP------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLR 169
Query: 284 LLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333
+LM +KKL G T ++ + E L DRI ++++G G L
Sbjct: 170 VLMRSEIKKLHERLGTTTIY-VTHDQVEAMTLADRIVVMNDGRIQQVGTPL 219
|
Length = 338 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 2e-18
Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 26/192 (13%)
Query: 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYG 182
+V+K N A G + ++G +GKSTLL + G L P S G V ++G + Y
Sbjct: 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQS----GAVLIDGE--PLDYS 59
Query: 183 SYGFVERETTL----------IGSLTVREYLYYSAL-LQLPGFFCQRKNVVEDAIHAMSL 231
G +ER + + + V + + + L L L +R V +A+ A+
Sbjct: 60 RKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVER--RVREALTAVGA 117
Query: 232 SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 291
S + HC L GE++RV IA + MRP VL +DEP LD M+ L+
Sbjct: 118 SGLRERPT--HC----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
Query: 292 KLASTGCTLLFT 303
+L + G T++ +
Sbjct: 172 RLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 4e-18
Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 21/207 (10%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG--------SYGF 186
G +++GP SGKSTLL+ + G L + GEV V+G + F
Sbjct: 29 KGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVF 85
Query: 187 VERETTLIGSLTVREYLYYSAL-LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
+ L G TV + + + L LP + + V +A+ + L + ++
Sbjct: 86 QNPDDQLFGP-TVEDEVAFGLENLGLPR--EEIEERVAEALELVGLEELLDRPP------ 136
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
L G+++RV IA L M P +L +DEP LD ++ LKKL G + +
Sbjct: 137 FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVT 196
Query: 306 QSSTEVFGLFDRICLLSNGNTLFFGET 332
V DR+ +L +G L G+
Sbjct: 197 HDLELVLEYADRVVVLDDGKILADGDP 223
|
Length = 235 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 1e-17
Identities = 63/245 (25%), Positives = 112/245 (45%), Gaps = 44/245 (17%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++L+ T + K +K + PG ++GP+ +GKSTLLR + G + ++ G
Sbjct: 4 ENLSKTYPNGK----KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS---G 56
Query: 169 EVFVNG-------------AKSEMPYGSYGFVERETTLIGSLTVRE-----YLYYSALLQ 210
V ++G + ++ G + ++ LI L+V E L + +
Sbjct: 57 SVLIDGTDINKLKGKALRQLRRQI-----GMIFQQFNLIERLSVLENVLSGRLGRRSTWR 111
Query: 211 -LPGFFCQRKNVVEDAIHAMS---LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRP 266
L G F K + A+ A+ L D A + + G G+++RV IAR L+ +P
Sbjct: 112 SLFGLF--PKEEKQRALAALERVGLLDKAYQRAD---QLSG---GQQQRVAIARALMQQP 163
Query: 267 HVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 325
++ DEP+ LD S+ +M LK++ G T++ +++Q DRI L +G
Sbjct: 164 KLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL-AREYADRIVGLKDGR 222
Query: 326 TLFFG 330
+F G
Sbjct: 223 IVFDG 227
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 1e-17
Identities = 63/220 (28%), Positives = 101/220 (45%), Gaps = 21/220 (9%)
Query: 119 RRYSDKV--VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNG- 174
+ Y KV V+ + A G +T ++G +GK+TLLR IA L P S G+V ++G
Sbjct: 9 KSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS----GKVTIDGV 64
Query: 175 ---AKSEMPYGSYGFVERETTLIGSLTVREYL-YYSALLQLPGFFCQRKNVVEDAIHAMS 230
G + E L LT RE L Y++ L L + K + + +
Sbjct: 65 DTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRK--EIKARIAELSKRLQ 122
Query: 231 LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290
L +Y ++ +G G +++V IAR LV P +L +DEP LD + +
Sbjct: 123 LLEYLDRRVGE------FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFI 176
Query: 291 KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
K+L + G ++F+ + EV L DR+ +L G + G
Sbjct: 177 KQLKNEGRAVIFS-SHIMQEVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 1e-17
Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 27/211 (12%)
Query: 132 YALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGA-------KSEMPYG 182
+ L +T I G + +GKSTLLR IAG + G + +NG K +P
Sbjct: 19 FDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDG-----GTIVLNGTVLFDSRKKINLPPQ 73
Query: 183 --SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
G V ++ L L VRE L + + + + V++ + + L N+
Sbjct: 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRKRNR---EDRISVDELLDLLGLDHLLNR--- 127
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCT 299
Y L GE++RV +AR L +P +L +DEP LD L ++ LK++
Sbjct: 128 ---YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIP 184
Query: 300 LLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
++F + +E L DRI ++ +G + G
Sbjct: 185 VIF-VTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 4e-17
Identities = 56/240 (23%), Positives = 100/240 (41%), Gaps = 42/240 (17%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
G V+ + + + G + I+G + SGKSTLLR I G L
Sbjct: 19 GDRVILDGVDLDVP------------------RGEILAILGGSGSGKSTLLRLILGLLRP 60
Query: 163 SARMYGEVFVNGAKSEMPYGS----------YGFVERETTLIGSLTVRE--YLYYSALLQ 210
GE+ ++G ++P S G + ++ L SLTV E +
Sbjct: 61 DK---GEILIDGE--DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTK 115
Query: 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLF 270
LP ++++ + + M L + Y L G R+RV +AR + + P +LF
Sbjct: 116 LP------ESLIRE-LVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF 168
Query: 271 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
+DEP LD +SA ++ +++L + + + + DR+ +L++G + G
Sbjct: 169 LDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEG 228
|
Length = 263 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 83.1 bits (205), Expect = 4e-17
Identities = 55/244 (22%), Positives = 95/244 (38%), Gaps = 32/244 (13%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
GA+ V DL++ I+ G + ++G + GK+TLLRAIAG
Sbjct: 16 GANTVLDDLSLEIE------------------AGELLALIGKSGCGKTTLLRAIAG-FVK 56
Query: 163 SARMYGEVFVNGAKSEM--PYG-SYGFVERETTLIGSLTVREYLYYSALLQ-LPGFFCQR 218
+A + G + + P+ + + L L V + + + Q +P
Sbjct: 57 AAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE 116
Query: 219 KNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278
+ V DA+ + L D L G ++R+ IAR + + P VL +DEPL L
Sbjct: 117 R--VADALKLVGLGDA------AAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSAL 168
Query: 279 DSVSALLMMVTLKKLASTGCTL-LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337
D+ M + L L + + + L D+ ++ +G GE A
Sbjct: 169 DANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
Query: 338 HFSN 341
++
Sbjct: 229 APAD 232
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 7e-17
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 18/214 (8%)
Query: 118 KRRYSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176
+R+ +P G++ ++GP+ SGKSTLLR IAG L G + +NG
Sbjct: 7 SKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQPDS--GRIRLNGQD 63
Query: 177 -SEMPYG--SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD 233
+ + GFV + L LTVR+ + + ++ + VE+ + + L
Sbjct: 64 ATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR-VEELLELVQLEG 122
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
++ Y L G+R+RV +AR L + P VL +DEP LD+ + L+KL
Sbjct: 123 LGDR------YPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKL 176
Query: 294 AS--TGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
T+ T +Q E + DRI ++SNG
Sbjct: 177 HDEVHVTTVFVTHDQE--EAMEVADRIVVMSNGK 208
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 2e-16
Identities = 57/234 (24%), Positives = 106/234 (45%), Gaps = 32/234 (13%)
Query: 99 RKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158
K G D++ +++ G + ++GP +GK+T +R I G
Sbjct: 7 TKRFGRVTALDDISFSVE------------------KGEIFGLLGPNGAGKTTTIRMILG 48
Query: 159 RLPHSARMYGEVFVNGAK-SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF-FC 216
+ + GEV +G G++ E L + V + L Y A QL G
Sbjct: 49 IILPDS---GEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLA--QLKGLKKE 103
Query: 217 QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276
+ + +++ + + LS+YANK + + L G +++V+ ++ P +L +DEP
Sbjct: 104 EARRRIDEWLERLELSEYANKRV------EELSKGNQQKVQFIAAVIHDPELLILDEPFS 157
Query: 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
LD V+ L+ +++LA G T++ + +Q V L DR+ LL+ G + +G
Sbjct: 158 GLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.3 bits (195), Expect = 2e-16
Identities = 67/247 (27%), Positives = 110/247 (44%), Gaps = 44/247 (17%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGR-------------LPHSARMYGEVFVNGAKSEMPYG 182
G M ++GP+ SGKSTLLR ++G L + + G + + KS
Sbjct: 30 GEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSR---A 86
Query: 183 SYGFVERETTLIGSLTVREYLYYSALLQLP-------GFFCQRKNVVEDAIHAMSLSDYA 235
+ G++ ++ L+ L+V E + AL P F ++K A+ + + +A
Sbjct: 87 NTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA 146
Query: 236 NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS 295
H + L G+++RV IAR L+ + V+ DEP+ LD SA ++M TL+ +
Sbjct: 147 ------HQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQ 200
Query: 296 T-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSD 354
G T++ T++Q +RI L G+ + G Q F N F D
Sbjct: 201 NDGITVVVTLHQVDY-ALRYCERIVALRQGHVFYDG----SSQQFDNERF---------D 246
Query: 355 HFLRAIN 361
H R+IN
Sbjct: 247 HLYRSIN 253
|
Length = 262 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 78.6 bits (195), Expect = 2e-16
Identities = 51/212 (24%), Positives = 86/212 (40%), Gaps = 39/212 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSYGFVER---- 189
PG + ++GP +GK+TL I+G L ++ G V +G + +P +
Sbjct: 25 PGEIHGLIGPNGAGKTTLFNLISGFLRPTS---GSVLFDGEDITGLP--PHEIARLGIGR 79
Query: 190 ---ETTLIGSLTVREYLYYSALLQLPGFFCQRKNV---------VEDAIHAMSLSDYANK 237
L LTV E + +A + + E+ + + L+D A++
Sbjct: 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADR 139
Query: 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG 297
G L G++RR+ IAR L P +L +DEP L+ + +++L G
Sbjct: 140 PAGE------LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERG 193
Query: 298 CTLLFTINQSSTE-----VFGLFDRICLLSNG 324
T+L E V L DR+ +L G
Sbjct: 194 ITVLL------VEHDMDVVMSLADRVTVLDQG 219
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 5e-16
Identities = 64/217 (29%), Positives = 95/217 (43%), Gaps = 36/217 (16%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG---------------AKSEM 179
G M I+GP+ +GKSTLLR++ G + + GE+ NG M
Sbjct: 29 QGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGM 85
Query: 180 PYGSYGFVER----ETTLIGSLTVREYLYYSALLQLPGFFCQR-KNVVEDAIHAMSLSDY 234
+ + V R E L+G L Y S L G F + K DA+ + + D
Sbjct: 86 IFQQFNLVPRLSVLENVLLGRLG-----YTSTWRSLFGLFSKEDKAQALDALERVGILDK 140
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
A + + G G+++RV IAR LV +P ++ DEP+ LD SA +M LK +
Sbjct: 141 AYQRAS---TLSG---GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDIN 194
Query: 295 -STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
G T++ ++Q DRI L G +F G
Sbjct: 195 QEDGITVIVNLHQVDL-AKKYADRIIGLKAGRIVFDG 230
|
Length = 258 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 6e-16
Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 34/227 (14%)
Query: 113 VTIKG-KRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
+ I+ + + D V + G ++GP+ GK+TLLR IAG S+ GE+
Sbjct: 6 LEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS---GEI 62
Query: 171 FVNGAKSEMPYGSYGFVERET-------TLIGSLTVREYLYYSALLQLPGFF--CQRKNV 221
++G +R L +TV E + + L++ + K
Sbjct: 63 LLDG----EDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKAR 116
Query: 222 VEDAIHAMSLSDYANKLI---GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278
VE+A+ + L +A++ G G+++RV +AR LV P VL +DEPL L
Sbjct: 117 VEEALELVGLEGFADRKPHQLSG---------GQQQRVALARALVPEPKVLLLDEPLSAL 167
Query: 279 DSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNG 324
D+ M LK+L G T ++ + E + DRI ++++G
Sbjct: 168 DAKLREQMRKELKELQRELGITFVY-VTHDQEEALAMSDRIAVMNDG 213
|
Length = 352 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 7e-16
Identities = 70/235 (29%), Positives = 103/235 (43%), Gaps = 41/235 (17%)
Query: 99 RKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158
K G V +++ IK G ++GP+ GK+TLLR IAG
Sbjct: 7 SKFYGGFVALDGVSLDIK------------------EGEFFTLLGPSGCGKTTLLRLIAG 48
Query: 159 -RLPHSARMYGEVFVNGAKSEMPYGSY----GFVERETTLIGSLTVREYLYYS-ALLQLP 212
P S GE+ ++G K + V + L LTV E + + L +LP
Sbjct: 49 FETPTS----GEILLDG-KDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLP 103
Query: 213 GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272
+ + V +A+ + L YAN+ L G+++RV IAR LV P VL +D
Sbjct: 104 KAEIKER--VAEALDLVQLEGYANR------KPSQLSGGQQQRVAIARALVNEPKVLLLD 155
Query: 273 EPLYHLDSVSALLMMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNGN 325
EPL LD M + LK+L G T +F T +Q E + DRI +++ G
Sbjct: 156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE--EALTMSDRIAVMNKGK 208
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 7e-16
Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 18/196 (9%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGSYGFVERE 190
G + ++GP +GK+T ++ + L ++ G V G + G V ++
Sbjct: 25 RGEIFGLLGPNGAGKTTTIKMLTTLLKPTS---GRATVAGHDVVREPREVRRRIGIVFQD 81
Query: 191 TTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
++ LT E LY A L +PG +R+ +++ + + L + A++L+ G
Sbjct: 82 LSVDDELTGWENLYIHARLYGVPG--AERRERIDELLDFVGLLEAADRLV---KTYSG-- 134
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSS 308
G RRR+ IAR LV RP VLF+DEP LD + + ++KL G T+L T
Sbjct: 135 -GMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLT-THYM 192
Query: 309 TEVFGLFDRICLLSNG 324
E L DR+ ++ +G
Sbjct: 193 EEAEQLCDRVAIIDHG 208
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 8e-16
Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
DLT T KR V+ + + G + +GP +GK+T ++ I G + + G
Sbjct: 4 NDLTKTYGKKR-----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS---G 55
Query: 169 EVFVNG---AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDA 225
E+ +G K+ G + +LT RE L A L G RK +++
Sbjct: 56 EITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARL--LGI---RKKRIDEV 110
Query: 226 IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285
+ + L D A K + KG G ++R+ IA L+ P +L +DEP LD
Sbjct: 111 LDVVGLKDSAKKKV------KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKE 164
Query: 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328
+ + L G T+L + + S E+ + DRI +++ G +
Sbjct: 165 LRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 1e-15
Identities = 58/191 (30%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G + V++GP+ GK+TLL IAG + S G + +NG + E P G V + L+
Sbjct: 30 SGELVVVLGPSGCGKTTLLNLIAGFVTPSR---GSIQLNGRRIEGPGAERGVVFQNEALL 86
Query: 195 GSLTVREYLYYSALLQLPGFF-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253
L V + + + LQL G QR+ + + + L +K Y+ L G R
Sbjct: 87 PWLNVIDNVAFG--LQLRGIEKAQRREIAHQMLALVGLEGAEHK------YIWQLSGGMR 138
Query: 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 313
+RV IAR L + P +L +DEP LD+++ M L L + I E
Sbjct: 139 QRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALF 198
Query: 314 LFDRICLLSNG 324
L R+ +LS G
Sbjct: 199 LATRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-15
Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK----SEMPYGS--YGFVER 189
G + ++GP+ +GKSTLLR IAG L G + +NG S + GFV +
Sbjct: 28 GELVALLGPSGAGKSTLLRIIAG-LETPDA--GRIRLNGRVLFDVSNLAVRDRKVGFVFQ 84
Query: 190 ETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248
L +TV + + + ++ + + VE+ + + L A++ Y L
Sbjct: 85 HYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR------YPAQL 138
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDS-VSALLMMVTLKKLASTGCTLLF-TINQ 306
G+R+RV +AR L + P VL +DEP LD+ V L K G T +F T +Q
Sbjct: 139 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ 198
Query: 307 SSTEVFGLFDRICLLSNGN 325
E L DR+ +L+ G
Sbjct: 199 E--EALELADRVVVLNQGR 215
|
Length = 345 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-15
Identities = 61/180 (33%), Positives = 92/180 (51%), Gaps = 23/180 (12%)
Query: 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGS----YGFV 187
A PG++T ++GP SGKSTLLR +AG L A G V + G + + V
Sbjct: 24 APPGSLTGLLGPNGSGKSTLLRLLAGALRPDA---GTVDLAGVDLHGLSRRARARRVALV 80
Query: 188 ERETTLIGSLTVREYLYYSALLQLP------GFFCQRKNVVEDAIHAMSLSDYANKLIGG 241
E+++ LTVR+ + AL ++P G VV+ A+ LS A++
Sbjct: 81 EQDSDTAVPLTVRDVV---ALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR---- 133
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
M L GER+RV +AR L P +L +DEP HLD + L + +++LA+TG T++
Sbjct: 134 --DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVV 191
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-15
Identities = 61/232 (26%), Positives = 111/232 (47%), Gaps = 22/232 (9%)
Query: 120 RYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-S 177
RY + K V N G V++GP+ SGK+T L+ I + ++ GE+ ++G S
Sbjct: 10 RYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS---GEILIDGEDIS 66
Query: 178 EMP----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV-VEDAIHAMSL- 231
++ G+V ++ L LTV E + + + +L G+ +R ++ + + L
Sbjct: 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENI--ATVPKLLGWDKERIKKRADELLDLVGLD 124
Query: 232 -SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290
S+YA++ Y L G+++RV +AR L P +L +DEP LD ++ + +
Sbjct: 125 PSEYADR------YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEI 178
Query: 291 KKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341
K+L G T++F + E L DRI ++ G + + L + +N
Sbjct: 179 KELQKELGKTIVF-VTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAN 229
|
Length = 309 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 66/251 (26%), Positives = 108/251 (43%), Gaps = 38/251 (15%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++L++ G + + + + G I+G + SGKSTL R +AG S+ G
Sbjct: 7 RNLSIVYGGGKFAF-HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS---G 62
Query: 169 EVFVNGAKSEMPYGSYGFVERETTLI-----GSL----TVREYLYYSALLQLPGFFCQRK 219
+ ++G P R ++ SL TV L S L+ G ++
Sbjct: 63 SILLDGKPLA-PKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQ 119
Query: 220 NVVEDAIHAMSLS-----DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
+ + + + L ++L GG +R+R+ IAR L+ P +L +DEP
Sbjct: 120 RI-AELLDQVGLPPSFLDRRPHELSGG----------QRQRIAIARALIPEPKLLILDEP 168
Query: 275 LYHLD-SVSALL--MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331
LD SV A + +++ LKK G T LF I+ V + DRI ++ NG + G
Sbjct: 169 TSALDVSVQAQILNLLLELKK--ERGLTYLF-ISHDLALVEHMCDRIAVMDNGQIVEIGP 225
Query: 332 TLACLQHFSNA 342
T L H S+
Sbjct: 226 TEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 3e-15
Identities = 65/208 (31%), Positives = 93/208 (44%), Gaps = 27/208 (12%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG------AKSEMPYGSYGFV 187
G + I+GP+ +GKSTLL IAG P S GE+ +NG +E P +
Sbjct: 24 AGEIVAILGPSGAGKSTLLNLIAGFETPAS----GEILINGVDHTASPPAERPVSM---L 76
Query: 188 ERETTLIGSLTVREY--LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
+E L LTV + L S L+L QR+ VE A + L+ + +L G
Sbjct: 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAE--QREK-VEAAAAQVGLAGFLKRLPG----- 128
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTI 304
L G+R+RV +AR LV +L +DEP LD M+ + +L TLL
Sbjct: 129 -ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVT 187
Query: 305 NQSSTEVFGLFDRICLLSNGNTLFFGET 332
+ + + DR+ L NG G T
Sbjct: 188 HHPE-DAARIADRVVFLDNGRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 5e-15
Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 25/198 (12%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNG------AKSEMPYGSYGFVE 188
G + IMGP+ +GKSTLL IAG + P S G + VN A + P S F
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPAS----GSIKVNDQSHTGLAPYQRPV-SMLF-- 76
Query: 189 RETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246
+E L LTVR+ + L PG +++ V DA + ++DY ++L
Sbjct: 77 QENNLFAHLTVRQNI---GLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQ----- 128
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 306
L G+R+RV +AR LV +L +DEP LD + M+ +K+L S L +
Sbjct: 129 -LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTH 187
Query: 307 SSTEVFGLFDRICLLSNG 324
++ + +I ++S G
Sbjct: 188 HLSDARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 6e-15
Identities = 64/250 (25%), Positives = 108/250 (43%), Gaps = 32/250 (12%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMY--GEVFVN 173
K+ K V ++ G + VIMG + SGKST +R + RL P + +++ GE +
Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRML-NRLIEPTAGQIFIDGENIMK 59
Query: 174 GAKSEMPYGS---YGFVERETTLIGSLTVREYLYYS-ALLQLPGFFCQRKNVVEDAIHAM 229
+ E+ G V ++ L +T+ + LL P +RK + + +
Sbjct: 60 QSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQ--ERKEKALELLKLV 117
Query: 230 SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 289
L +Y H Y L G ++RV +AR L P +L +DE LD + M
Sbjct: 118 GLEEYE------HRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDE 171
Query: 290 LKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPI 348
LKKL +T T++F I E + DRI ++ G + G P I
Sbjct: 172 LKKLQATLQKTIVF-ITHDLDEAIRIGDRIVIMKAGEIV-------------QVGTPDEI 217
Query: 349 MQSPSDHFLR 358
+++P++ ++
Sbjct: 218 LRNPANEYVE 227
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 7e-15
Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 41/210 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGSY-----G 185
G I+GP+ SGKSTLL + G ++ GEV +NG SE G
Sbjct: 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTS---GEVLINGKDLTKLSEKELAKLRRKKIG 86
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS----LSD-----YAN 236
FV + L+ LTV E + L+ + + A + L D +
Sbjct: 87 FVFQNFNLLPDLTVLENVELPLLIAG-----KSAGRRKRAAEELLEVLGLEDRLLKKKPS 141
Query: 237 KLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-S 295
+L GG +++RV IAR L+ P ++ DEP +LDS +A ++ L++L
Sbjct: 142 ELSGG----------QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE 191
Query: 296 TGCTLLF-TINQSSTEVFGLFDRICLLSNG 324
G T++ T + E+ DR+ L +G
Sbjct: 192 RGKTIIMVTHDP---ELAKYADRVIELKDG 218
|
Length = 226 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-14
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 20/131 (15%)
Query: 150 STLLRAIAGRLPHSARMYGEVFVNG-AKSEMPYGSY-----GFVERETTLIGSLTVREYL 203
STLL+ I G L ++ G + ++G + + G V ++ L LTVRE L
Sbjct: 1 STLLKLITGLLQPTS---GTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263
++ + + E+A+ + L D+ ++ + L G+++RV IAR L+
Sbjct: 58 FFGLRDK------EADARAEEALERVGLPDFLDRE-----PVGTLSGGQKQRVAIARALL 106
Query: 264 MRPHVLFIDEP 274
+P +L +DEP
Sbjct: 107 KKPKLLLLDEP 117
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 4e-14
Identities = 70/240 (29%), Positives = 108/240 (45%), Gaps = 30/240 (12%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
G ++G + GKSTLL I+G P S G V + G + P V + +L
Sbjct: 10 QGEFISLIGHSGCGKSTLLNLISGLAQPTS----GGVILEGKQITEPGPDRMVVFQNYSL 65
Query: 194 IGSLTVREYLYY---SALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250
+ LTVRE + L L +R+ +VE+ I + L++ A+K G L
Sbjct: 66 LPWLTVRENIALAVDRVLPDLSK--SERRAIVEEHIALVGLTEAADKRPGQ------LSG 117
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSST 309
G ++RV IAR L +RP VL +DEP LD+++ + L ++ T+L +
Sbjct: 118 GMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLM-VTHDVD 176
Query: 310 EVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCP-----IMQSPSDHFLRAINTDF 364
E L DR+ +L+NG G+ L FP P +++ PS + LR F
Sbjct: 177 EALLLSDRVVMLTNGPAANIGQIL-------EVPFPRPRDRLEVVEDPSYYDLRNEALYF 229
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 4e-14
Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 20/197 (10%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVER--ETT 192
G + ++GP +GK+TLLRAI G +P + G V V GA + G+V + E
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAK---GTVKVAGASPGKGWRHIGYVPQRHEFA 61
Query: 193 LIGSLTVREYLYYSALLQLPGFFCQRKNV-----VEDAIHAMSLSDYANKLIGGHCYMKG 247
++V + S G+ +R V V DA+ + L++ A++ +G
Sbjct: 62 WDFPISVAHTV-MSGRTGHIGWL-RRPCVADFAAVRDALRRVGLTELADRPVG------E 113
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307
L G+R+RV +AR L RP VL +DEP LD + L+ +LA G +L T
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT-THD 172
Query: 308 STEVFGLFDRICLLSNG 324
+ DR+ LL NG
Sbjct: 173 LAQAMATCDRVVLL-NG 188
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 5e-14
Identities = 57/198 (28%), Positives = 97/198 (48%), Gaps = 18/198 (9%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVF---VNGAKSEMPYG---SYGFV 187
PG + ++ GP+ SGK+TLL I G R + +V + GA + + G++
Sbjct: 30 PGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL--KVLGQELYGASEKELVQLRRNIGYI 87
Query: 188 ERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247
+ L+G LT R+ + + LQ + + + + A+ L D+ + Y
Sbjct: 88 FQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY------YPHN 141
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQ 306
L G+++RV IAR LV RP ++ DEP LDS S ++ ++KLA GCT+L +
Sbjct: 142 LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHD 201
Query: 307 SSTEVFGLFDRICLLSNG 324
+ + + DRI + +G
Sbjct: 202 N--RILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 6e-14
Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 28/210 (13%)
Query: 134 LPGT-MTVIMGPAKSGKSTLLRAIAGRL-PHSARMY--GEVFVNGAKS-EMP--YGSYGF 186
LPG +T I G + SGK+TL+R IAG P + G + K +P G+
Sbjct: 20 LPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-----LSDYANKLIGG 241
V +E L L+VR L Y P + + + + + L +L GG
Sbjct: 80 VFQEARLFPHLSVRGNLRYGMKRARP----SERRISFERVIELLGIGHLLGRLPGRLSGG 135
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTL 300
E++RV I R L+ P +L +DEPL LD ++ L++L A G +
Sbjct: 136 ----------EKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
L+ ++ S EV L DR+ +L +G G
Sbjct: 186 LY-VSHSLQEVLRLADRVVVLEDGRVAAAG 214
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 7e-14
Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 33/230 (14%)
Query: 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGE 169
+L+ ++ G+R + PG + I+GP +GKSTLL+A++G L + GE
Sbjct: 6 NLSYSLAGRRLLDGVSLD-----LRPGEVLAILGPNGAGKSTLLKALSGELSPDS---GE 57
Query: 170 VFVNG-AKSEMPYGSY----GFVERETTLIGSLTVREYLYYSAL-LQLPGFFCQRKNVVE 223
V +NG + P + + ++L TV+E + + + + + +
Sbjct: 58 VTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAA 117
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL------VMRPHVLFIDEPLYH 277
A+ A LS A + + L GE++RV++AR L V LF+DEP
Sbjct: 118 QALAATDLSGLAGRDY------RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171
Query: 278 LDSVSALLMMVTLKKLASTG---CTLLFTINQSSTEVFGLFDRICLLSNG 324
LD + ++LA G +L +N ++ DRI LL G
Sbjct: 172 LDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYA----DRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 7e-14
Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 31/203 (15%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYGEVFVNGA------KSEMPY--GSYGF 186
G ++GP+ +GKSTLL+ I LP S G + VNG +PY G
Sbjct: 27 GEFVFLVGPSGAGKSTLLKLIYKEELPTS----GTIRVNGQDVSDLRGRAIPYLRRKIGV 82
Query: 187 VERETTLIGSLTVREYLYYS-ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V ++ L+ V E + ++ + +P +++ V A+ + LS
Sbjct: 83 VFQDFRLLPDRNVYENVAFALEVTGVPPREIRKR--VPAALELVGLSHKH------RALP 134
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
L GE++RV IAR +V P +L DEP +LD + +M LKK+ G T++ +
Sbjct: 135 AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATH 194
Query: 306 QSSTEVFGLFD----RICLLSNG 324
L D R+ L G
Sbjct: 195 AKE-----LVDTTRHRVIALERG 212
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 9e-14
Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 15/206 (7%)
Query: 140 VIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAK-SEMP--YGSYGFVERETTLIG 195
VI+GP SGKS LL IAG + P S G++ +NG + +P +V + L
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDS----GKILLNGKDITNLPPEKRDISYVPQNYALFP 84
Query: 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255
+TV + + Y + K +E + ++ + L+ + + L GE++R
Sbjct: 85 HMTVYKNIAYGLKKRK-----VDKKEIERKVLEIAEMLGIDHLL--NRKPETLSGGEQQR 137
Query: 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315
V IAR LV+ P +L +DEP LD + + LKK+ + + E + L
Sbjct: 138 VAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALA 197
Query: 316 DRICLLSNGNTLFFGETLACLQHFSN 341
D++ ++ NG + G+ + N
Sbjct: 198 DKVAIMLNGKLIQVGKPEEVFKKPKN 223
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 1e-13
Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 20/178 (11%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA------KSEMPY--GSYGF 186
G + GP+ +GK+TLL+ + G L S G+V + G ++P G
Sbjct: 27 KGEFLFLTGPSGAGKTTLLKLLYGALTPSR---GQVRIAGEDVNRLRGRQLPLLRRRIGV 83
Query: 187 VERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V ++ L+ TV E + ++ QR+ V A+ + L A +
Sbjct: 84 VFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR--VGAALRQVGLEHKA------DAFP 135
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
+ L GE++RV IAR +V P +L DEP +LD + ++ LK+L G T++
Sbjct: 136 EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVA 193
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 65/256 (25%), Positives = 104/256 (40%), Gaps = 39/256 (15%)
Query: 90 PLPEGAAVARKIAGAS--VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKS 147
P P+ I + K+++V GK K++ + PG I+GP +
Sbjct: 14 PEPKEPKKRHPIEINEPLIELKNVSVRRNGK-----KILGDLSWQVNPGEHWAIVGPNGA 68
Query: 148 GKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG----SLTVREYL 203
GK+TLL + G P S+ G+V + G G F R+ IG L R +
Sbjct: 69 GKTTLLSLLTGEHPPSS---GDVTLLG--RRFGKGETIFELRKR--IGLVSSELHERFRV 121
Query: 204 YYSAL-LQLPGFFC-----------QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251
+ + L GFF + + + + A++ L G
Sbjct: 122 RETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR------PFGSLSQG 175
Query: 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSST 309
E+RRV IAR LV P +L +DEP LD ++ ++ L++LA++ LLF + +
Sbjct: 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLF-VTHHAE 234
Query: 310 EVFGLFDRICLLSNGN 325
E+ F LL G
Sbjct: 235 EIPPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 60/227 (26%), Positives = 104/227 (45%), Gaps = 20/227 (8%)
Query: 112 TVTIKG-KRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGE 169
+ I+G + + DK V + + PG + ++GP +GK+T R I G L + GE
Sbjct: 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTE---GE 58
Query: 170 VFVNGAK-SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA 228
+ NG S+ G++ E L +TV + L Y A L K + + I
Sbjct: 59 ITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAEL---------KGMPKAEI-Q 108
Query: 229 MSLSDYANKL-IGGHCY--MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285
L + +L I G +K L G +++++ ++ P +L +DEP LD V+ L
Sbjct: 109 KKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVEL 168
Query: 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
+ + +L G T++F+ + V L DR+ +L G T+ +G
Sbjct: 169 LKDAIFELKEEGATIIFS-SHRMEHVEELCDRLLMLKKGQTVLYGTV 214
|
Length = 300 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 2e-13
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 29/218 (13%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMY-GEVFVNGA 175
KR + + N G V++GP+ GK+T LR IAG P S R+Y G V
Sbjct: 8 KRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDL 67
Query: 176 KSE-----MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV---VEDAIH 227
+ M + +Y L +TV + + + L+L + + V +
Sbjct: 68 PPKDRDIAMVFQNYA-------LYPHMTVYDNIAFG--LKLRKV--PKDEIDERVREVAE 116
Query: 228 AMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 287
+ + ++ K L G+R+RV + R +V P V +DEPL +LD+ + M
Sbjct: 117 LLQIEHLLDR------KPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMR 170
Query: 288 VTLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
LK+L G T ++ + E + DRI ++++G
Sbjct: 171 AELKRLQQRLGTTTIY-VTHDQVEAMTMADRIAVMNDG 207
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 3e-13
Identities = 59/211 (27%), Positives = 92/211 (43%), Gaps = 44/211 (20%)
Query: 113 VTIKG-KRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
+ IK + + D V+K + G + VI+GP+ SGKSTLLR I + G +
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS---GTI 57
Query: 171 FVNGAK------------SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQR 218
++G K ++ G V ++ L LTV E + A +++ G +
Sbjct: 58 IIDGLKLTDDKKNINELRQKV-----GMVFQQFNLFPHLTVLENITL-APIKVKGM--SK 109
Query: 219 KNVVEDAIHAMS---LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275
E A+ + L+D A+ Y L G+++RV IAR L M P V+ DEP
Sbjct: 110 AEAEERALELLEKVGLADKADA------YPAQLSGGQQQRVAIARALAMNPKVMLFDEPT 163
Query: 276 YHLDSVSALLMMV-----TLKKLASTGCTLL 301
LD +V +K LA G T++
Sbjct: 164 SALDP-----ELVGEVLDVMKDLAEEGMTMV 189
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 4e-13
Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 24/193 (12%)
Query: 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA-----K 176
+ N G +T ++G + +GKSTLL + G L + GE+ VNG
Sbjct: 333 GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ---GEIRVNGIDLRDLS 389
Query: 177 SEMPYGSYGFVERETTLIGSLTVRE--YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY 234
E +V + L + T+RE L + A+ L ++
Sbjct: 390 PEAWRKQISWVSQNPYLF-AGTIRENILLARPDA---------SDEEIIAALDQAGLLEF 439
Query: 235 ANKLIGGHCYM----KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290
K G + GL G+ +R+ +AR L+ +L +DEP HLD+ + +++ L
Sbjct: 440 VPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQAL 499
Query: 291 KKLASTGCTLLFT 303
++LA L+ T
Sbjct: 500 QELAKQKTVLVIT 512
|
Length = 559 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 4e-13
Identities = 68/234 (29%), Positives = 104/234 (44%), Gaps = 46/234 (19%)
Query: 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNG------ 174
+ +K+ N PG I+GP+ +GKSTLLR I RL P S G + + G
Sbjct: 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCI-NRLVEPSS----GSILLEGTDITKL 69
Query: 175 ---------AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVED 224
+ M + Y +ER T L L R L Y + L G F + ED
Sbjct: 70 RGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGR--LGYKPTWRSLLGRFSE-----ED 122
Query: 225 AIHAMS------LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278
A+S L+D A + L G+++RV IAR L +P ++ DEP+ L
Sbjct: 123 KERALSALERVGLADKAYQRA------DQLSGGQQQRVAIARALAQQPDLILADEPIASL 176
Query: 279 DSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLF-DRICLLSNGNTLFFG 330
D ++ +M LK++ G T++ ++Q ++ + DRI L G +F G
Sbjct: 177 DPKTSKQVMDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDG 228
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 5e-13
Identities = 49/153 (32%), Positives = 72/153 (47%), Gaps = 26/153 (16%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G V+ GP SGK+TLLR IAG LP +A G + ++G + P V +
Sbjct: 27 AGEALVLTGPNGSGKTTLLRLIAGLLPPAA---GTIKLDGGDIDDPD-----VAEACHYL 78
Query: 195 G-------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247
G +LTV E L + A F + + A+ A+ L+ A+ L G+
Sbjct: 79 GHRNAMKPALTVAENLEFWA-----AFLGGEELDIAAALEAVGLAPLAH-LPFGY----- 127
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
L G++RRV +AR LV + +DEP LD+
Sbjct: 128 LSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160
|
Length = 207 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 7e-13
Identities = 57/216 (26%), Positives = 87/216 (40%), Gaps = 30/216 (13%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSYGFVER---- 189
PG + ++GP +GK+TL I G S+ G V G + +P +
Sbjct: 29 PGEIVGLIGPNGAGKTTLFNLITGFYKPSS---GTVIFRGRDITGLP--PHRIARLGIAR 83
Query: 190 ---ETTLIGSLTVRE--------YLYYSALLQLPGFFCQRKNVVEDAIHA---MSLSDYA 235
T L LTV E L S LL P + + E A + L + A
Sbjct: 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELA 143
Query: 236 NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS 295
++ G L G++RR+ IAR L +P +L +DEP L+ + +++L
Sbjct: 144 DRPAGN------LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD 197
Query: 296 TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331
G + I V GL DRI +L+ G + G
Sbjct: 198 RGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233
|
Length = 250 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 8e-13
Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 20/222 (9%)
Query: 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNG----A 175
+K + G +T ++GP+ GKSTLLR + L A GEV ++G
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD 71
Query: 176 KSEMPYG---SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
G V ++ ++ + + Y L + VE+A+ +L
Sbjct: 72 LDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALW 130
Query: 233 DY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 291
D ++L GL G+++R+ +AR L P VL +DEP LD +S + +
Sbjct: 131 DEVKDRLHAL-----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIA 185
Query: 292 KLASTGCTLLFTIN-QSSTEVFGLFDRICLLSNGNTLFFGET 332
+L ++ T N Q + V DR L NG + FG T
Sbjct: 186 ELKKEYTIVIVTHNMQQAARV---ADRTAFLLNGRLVEFGPT 224
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 8e-13
Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 21/175 (12%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG----FVERE 190
G + GP GK+TLLR +AG L + GEV NG ++
Sbjct: 25 AGEALQVTGPNGIGKTTLLRILAGLLRPDS---GEVRWNGTALAEQRDEPHRNILYLGHL 81
Query: 191 TTLIGSLTVREYL-YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
L L+ E L +++A+ + +EDA+ A+ L+ + + L
Sbjct: 82 PGLKPELSALENLHFWAAIHG------GAQRTIEDALAAVGLTGFEDLPAA------QLS 129
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVS-ALLMMVTLKKLASTGCTLLFT 303
G++RR+ +AR + R + +DEP LD ALL + LA G LL T
Sbjct: 130 AGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTT 184
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 8e-13
Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 36/243 (14%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEMPYG--------SYG 185
G + VIMG + SGKSTLLR I + ++ G+V ++G + M
Sbjct: 49 EGEIFVIMGLSGSGKSTLLRCINRLIEPTS---GKVLIDGQDIAAMSRKELRELRRKKIS 105
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQ-RKNVVEDAIHAMSLSDYANKLIGGHCY 244
V + L+ TV E + + L++ G R+ +A+ + L + +K
Sbjct: 106 MVFQSFALLPHRTVLENVAFG--LEVQGVPRAEREERAAEALELVGLEGWEHKYPDE--- 160
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFT 303
L G ++RV +AR L + P +L +DE LD + M L +L A T++F
Sbjct: 161 ---LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVF- 216
Query: 304 INQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTD 363
I E L DRI ++ +G + G P I+ +P++ ++R
Sbjct: 217 ITHDLDEALRLGDRIAIMKDGRLV-------------QVGTPEEILTNPANDYVREFFRG 263
Query: 364 FDR 366
DR
Sbjct: 264 VDR 266
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-12
Identities = 55/200 (27%), Positives = 88/200 (44%), Gaps = 17/200 (8%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGSYGFVERET 191
G + +GP +GK+T +R + L ++ G V G + S G V +
Sbjct: 19 GEVFGFLGPNGAGKTTTIRMLTTLLRPTS---GTARVAGYDVVREPRKVRRSIGIVPQYA 75
Query: 192 TLIGSLTVREYLY-YSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250
++ LT RE L L LP + + E+ + L + A++ +G G
Sbjct: 76 SVDEDLTGRENLEMMGRLYGLPKDEAEER--AEELLELFELGEAADRPVG---TYSG--- 127
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310
G RRR+ IA L+ +P VLF+DEP LD + + ++ L G T+L T E
Sbjct: 128 GMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLT-THYMEE 186
Query: 311 VFGLFDRICLLSNGNTLFFG 330
L DRI ++ +G + G
Sbjct: 187 ADKLCDRIAIIDHGRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-12
Identities = 52/236 (22%), Positives = 90/236 (38%), Gaps = 44/236 (18%)
Query: 87 PSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAK 146
PL A V A S+ + ++V G+ ++ + PG ++GP+
Sbjct: 304 APRPLAGKAPVTAAPA-PSLEFSGVSVAYPGR----RPALRPVSFTVPPGERVALVGPSG 358
Query: 147 SGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYY 205
+GKSTLL + G P G + VNG + + R+ + +
Sbjct: 359 AGKSTLLNLLLGFVDPTE----GSIAVNG--------------VPLADADADSWRDQIAW 400
Query: 206 SALLQLPGFFCQ--RKNV-----------VEDAIHAMSLSDYANKLIGGHCYM-----KG 247
Q P F +N+ + +A+ L ++ L G G
Sbjct: 401 VP--QHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAG 458
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
L G+ +R+ +AR + +L +DEP HLD+ + ++ L+ LA LL T
Sbjct: 459 LSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVT 514
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 2e-12
Identities = 51/201 (25%), Positives = 81/201 (40%), Gaps = 68/201 (33%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSY----GFVER 189
PG I+GP+ SGKSTLL+ + ++ GE+ ++G ++ S +V +
Sbjct: 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTS---GEILIDGVDLRDLDLESLRKNIAYVPQ 83
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
+ L S T+RE N+ LS
Sbjct: 84 DPFLF-SGTIRE------------------NI---------LSG---------------- 99
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF------T 303
G+R+R+ IAR L+ P +L +DE LD + L++ L+ LA G T++ T
Sbjct: 100 -GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLST 157
Query: 304 INQSSTEVFGLFDRICLLSNG 324
I DRI +L +G
Sbjct: 158 IRD--------ADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 2e-12
Identities = 63/252 (25%), Positives = 100/252 (39%), Gaps = 46/252 (18%)
Query: 74 ASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTV---TIKGKRRYSDKVVKSSN 130
A P L P A + ++L+ + KG VK+ +
Sbjct: 257 AVPRLGD-EKIIRLPRRGPLRAEPLLSV-------RNLSKRYGSRKGLFVRERGEVKAVD 308
Query: 131 GYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS---- 183
+ G ++G + SGKSTL R +AG LP S+ G + +G ++ G
Sbjct: 309 DVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSS---GSIIFDGQDLDLTGGELRRL 365
Query: 184 -----YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANK 237
F + ++L +TV + L + G +R+ V + + + L ++ ++
Sbjct: 366 RRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR 425
Query: 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL----LMMVT--LK 291
Y L G+R+RV IAR L + P +L +DEP VSAL V LK
Sbjct: 426 ------YPHELSGGQRQRVAIARALALEPKLLILDEP------VSALDVSVQAQVLNLLK 473
Query: 292 KL-ASTGCTLLF 302
L G T LF
Sbjct: 474 DLQEELGLTYLF 485
|
Length = 539 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 3e-12
Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 21/200 (10%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYG--SYGFVERET 191
G + ++GP+ SGK+TLLR IAG L G + G +++P + GFV +
Sbjct: 27 SGELVALLGPSGSGKTTLLRLIAG-LERPDS--GTILFGGEDATDVPVQERNVGFVFQHY 83
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA----MSLSDYANKLIGGHCYMKG 247
L +TV + + + L P + + +H + L A++ Y
Sbjct: 84 ALFRHMTVFDNVAF-GLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR------YPAQ 136
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLF-TIN 305
L G+R+RV +AR L + P VL +DEP LD+ + L++L T +F T +
Sbjct: 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196
Query: 306 QSSTEVFGLFDRICLLSNGN 325
Q E + DR+ +++ G
Sbjct: 197 QE--EALEVADRVVVMNKGR 214
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 3e-12
Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 24/178 (13%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG----FVERET 191
G + GP SGK+TLLR +AG P A G V +NG + S ++
Sbjct: 26 GEALQVTGPNGSGKTTLLRILAGLSPPLA---GRVLLNGGPLDFQRDSIARGLLYLGHAP 82
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQ--RKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
+ +L+V E L F+ VE+A+ + L+ + + L
Sbjct: 83 GIKTTLSVLENLR---------FWHADHSDEQVEEALARVGLNGF------EDRPVAQLS 127
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307
G++RRV +AR L+ + +DEP LD + + G ++ T +Q
Sbjct: 128 AGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 4e-12
Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 26/179 (14%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
G I GP +GK+TLLR +AG L A GEV+ G + SY +
Sbjct: 26 NAGEALQITGPNGAGKTTLLRILAGLLRPDA---GEVYWQGEPIQNVRESY---HQALLY 79
Query: 194 IG-------SLTVREYL-YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
+G LT E L ++ + +A+ + L+ + +G
Sbjct: 80 LGHQPGIKTELTALENLHFWQRFHG-----SGNAATIWEALAQVGLAGLEDLPVG----- 129
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS-ALLMMVTLKKLASTGCTLLFT 303
L G++RRV +AR + + +DEP LD ALL + A G LL T
Sbjct: 130 -QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTT 187
|
Length = 209 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 6e-12
Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 50/250 (20%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA----------------KSEM 179
G + VIMG + SGKSTL+R + + + GE+ V+G K M
Sbjct: 54 GEIFVIMGLSGSGKSTLVRLLNRLIEPTR---GEILVDGKDIAKLSAAELRELRRKKISM 110
Query: 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF-FCQRKNVVEDAIHAMSLSDYANKL 238
+ S+ L+ TV E + + L++ G +R+ +A+ + L YA+K
Sbjct: 111 VFQSFA-------LLPHRTVLENVAFG--LEVQGVPKAEREERALEALELVGLEGYADK- 160
Query: 239 IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTG 297
Y L G ++RV +AR L P +L +DE LD + M L +L A
Sbjct: 161 -----YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK 215
Query: 298 CTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFL 357
T++F I E + DRI ++ +G +Q G P I+ +P++ ++
Sbjct: 216 KTIVF-ITHDLDEALRIGDRIAIMKDGEI---------VQV----GTPEEILLNPANDYV 261
Query: 358 RAINTDFDRI 367
R + DR
Sbjct: 262 RDFVRNVDRS 271
|
Length = 386 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 6e-12
Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 30/221 (13%)
Query: 141 IMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLT 198
++GP+ GK+TLLR +AG + + M V + + V + L +T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRH--INMVFQSYALFPHMT 58
Query: 199 VREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257
V E + + ++ +P + K V +A+ + L ++A++ L G+++RV
Sbjct: 59 VEENVAFGLKMRKVPR--AEIKPRVLEALRLVQLEEFADR------KPHQLSGGQQQRVA 110
Query: 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLF-TINQSSTEVFGLF 315
+AR LV +P +L +DEPL LD M + LK + G T +F T +Q E +
Sbjct: 111 LARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE--EAMTMS 168
Query: 316 DRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHF 356
DRI ++ G + G P I + P++ F
Sbjct: 169 DRIAIMRKGK-------------IAQIGTPEEIYEEPANLF 196
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 7e-12
Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 36/211 (17%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSY-------GF 186
G + ++G +GK+TLL+ I G LP G + +G + +P + G+
Sbjct: 25 EGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLP--PHERARAGIGY 79
Query: 187 V--ERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-----SLSDYANKLI 239
V R + LTV E L L G + +R+ + + + L + +L
Sbjct: 80 VPEGRR--IFPELTVEENL-------LLGAYARRRAKRKARLERVYELFPRLKERRKQL- 129
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
G + G GE++ + IAR L+ RP +L +DEP L + +++L G T
Sbjct: 130 AGT--LSG---GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVT 184
Query: 300 LLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
+L + Q++ + DR +L G + G
Sbjct: 185 ILL-VEQNARFALEIADRAYVLERGRVVLEG 214
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 8e-12
Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 34/233 (14%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---------SEMPYGSYGF 186
G + VIMG + SGKST++R + RL R G+V ++G E+
Sbjct: 54 GEIFVIMGLSGSGKSTMVRLL-NRLIEPTR--GQVLIDGVDIAKISDAELREVRRKKIAM 110
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFC-QRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V + L+ +TV + + ++L G +R+ DA+ + L +YA H Y
Sbjct: 111 VFQSFALMPHMTVLDNTAFG--MELAGINAEERREKALDALRQVGLENYA------HSYP 162
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
L G R+RV +AR L + P +L +DE LD + M L KL + + I+
Sbjct: 163 DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS 222
Query: 306 QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLR 358
E + DRI ++ NG + G P I+ +P++ ++R
Sbjct: 223 HDLDEAMRIGDRIAIMQNGEVV-------------QVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 8e-12
Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 40/237 (16%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMPYG------SYGFV 187
G V++GP+ SGK+T ++ I RL P S GE+F++G + G+V
Sbjct: 27 GEFLVLIGPSGSGKTTTMKMI-NRLIEPTS----GEIFIDG-EDIREQDPVELRRKIGYV 80
Query: 188 ERETTLIGSLTVREYLYYSALLQLPGFF-CQRKNVVEDAIHAMSLSD--YANKLIGGHCY 244
++ L +TV E + + + +L + + + ++ + + L +A++ Y
Sbjct: 81 IQQIGLFPHMTVEENI--ALVPKLLKWPKEKIRERADELLALVGLDPAEFADR------Y 132
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFT 303
L G+++RV +AR L P +L +DEP LD ++ + K+L G T++F
Sbjct: 133 PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVF- 191
Query: 304 INQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
+ E F L DRI ++ NG + G P I++SP++ F+
Sbjct: 192 VTHDIDEAFRLADRIAIMKNGEIVQVGT-------------PDEILRSPANDFVAEF 235
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 8e-12
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 60/244 (24%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++L+V + G+ ++ + PG + I+GP +GKSTLLRA++G L + G
Sbjct: 6 RNLSVRLGGRT-----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDS---G 57
Query: 169 EVFVNGAKSEMPYGSYGFVER---------ETTLIGSLTVREYLYYSALLQLPGFFCQR- 218
EV +NG P + E ++L TV E + A+ + P +
Sbjct: 58 EVRLNGR----PLADWSPAELARRRAVLPQHSSLSFPFTVEEVV---AMGRAPHGLSRAE 110
Query: 219 -KNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV------MRPHVLFI 271
+V A+ + L+ A + Y + L GE++RV++AR L P L +
Sbjct: 111 DDALVAAALAQVDLAHLAGRD-----YPQ-LSGGEQQRVQLARVLAQLWEPDGPPRWLLL 164
Query: 272 DEPLYHLDSVSAL------LMMVTLKKLASTG----CTLLFTINQSSTEVFGLF-DRICL 320
DEP SAL ++ ++LA +L +N ++ + DRI L
Sbjct: 165 DEP------TSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAA-----RYADRIVL 213
Query: 321 LSNG 324
L G
Sbjct: 214 LHQG 217
|
Length = 258 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 1e-11
Identities = 64/199 (32%), Positives = 93/199 (46%), Gaps = 27/199 (13%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAK------SEMPYGSYGFVE 188
G +T I+GP+ SGKSTLL IAG P S G V +NG ++ P +
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQS----GRVLINGVDVTAAPPADRPVSM---LF 76
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246
+E L LTV + + L PG + + +E A+ + L+ +L G
Sbjct: 77 QENNLFAHLTVEQNV---GLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGE----- 128
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLASTGCTLLFTIN 305
L GER+RV +AR LV VL +DEP LD ++ A ++ + L A T T+L +
Sbjct: 129 -LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTH 187
Query: 306 QSSTEVFGLFDRICLLSNG 324
Q + L R+ L NG
Sbjct: 188 QPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 34/228 (14%)
Query: 120 RYSD--KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177
YSD +K N G +T I+G +GKSTL + + G L S+ G + +G
Sbjct: 14 NYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS---GRILFDG--K 68
Query: 178 EMPYGSYGFVE-RETTLIG-----------SLTVREYLYYSAL-LQLPGFFCQRKNVVED 224
+ Y G ++ RE+ +G S +V + + + A+ L+LP +++ V++
Sbjct: 69 PIDYSRKGLMKLRES--VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR--VDN 124
Query: 225 AIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
A+ + +K HC L G+++RV IA LVM P VL +DEP LD +
Sbjct: 125 ALKRTGIEHLKDKPT--HC----LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178
Query: 285 LMMVTLKKLAS-TGCTLLFTINQSSTEVFGLF-DRICLLSNGNTLFFG 330
+M L ++ G T++ I ++ L+ D + ++ G + G
Sbjct: 179 EIMKLLVEMQKELGLTII--IATHDIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 31/220 (14%)
Query: 120 RYSD--KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAK 176
Y D + +K N A G M ++GP +GKSTL G L P S GEV + G
Sbjct: 10 SYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTS----GEVLIKGE- 64
Query: 177 SEMPYGSYGFVERETTL----------IGSLTVREYLYYSAL-LQLPGFFCQRKNVVEDA 225
+ Y +E T+ + + TV E + + L L L +++ V++A
Sbjct: 65 -PIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKR--VKEA 121
Query: 226 IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285
+ A+ + + NK H ++ G G+++RV IA L M+P ++ +DEP LD + A
Sbjct: 122 LKAVGMEGFENK--PPH-HLSG---GQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175
Query: 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLF-DRICLLSNG 324
+M L L G T++ I+ ++ ++ D++ ++S+G
Sbjct: 176 IMKLLYDLNKEGITII--ISTHDVDLVPVYADKVYVMSDG 213
|
Length = 275 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 3e-11
Identities = 54/186 (29%), Positives = 81/186 (43%), Gaps = 41/186 (22%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----------SEMPYGS 183
G + VI+GP+ SGKSTLLR + G + G + V+G ++
Sbjct: 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITVDGEDVGDKKDILKLRRKV---- 79
Query: 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS------LSDYANK 237
G V ++ L LTV E + A +++ K + A+ L+D A+
Sbjct: 80 -GMVFQQFNLFPHLTVLENVTL-APVKVKK---LSKAEARE--KALELLEKVGLADKADA 132
Query: 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD--SVSALLMMVTLKKLAS 295
Y L G+++RV IAR L M P V+ DEP LD V +L +K LA
Sbjct: 133 ------YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD--VMKDLAE 184
Query: 296 TGCTLL 301
G T++
Sbjct: 185 EGMTMI 190
|
Length = 240 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 3e-11
Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 17/221 (7%)
Query: 110 DLTVTIKGKRR-YSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY 167
++ + + G + Y DKVV + + + G ++GP +GKST+ R + G +
Sbjct: 2 NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR--- 58
Query: 168 GEVFVNG----AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVE 223
G++ V G +++ + + G V + L TVRE LL +F +E
Sbjct: 59 GKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRE-----NLLVFGRYFGMSTREIE 113
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
I SL ++A + L G +RR+ +AR L+ P +L +DEP LD +
Sbjct: 114 AVIP--SLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 171
Query: 284 LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
L+ L+ L + G T+L T E L DR+C+L +G
Sbjct: 172 HLIWERLRSLLARGKTILLT-THFMEEAERLCDRLCVLESG 211
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 4e-11
Identities = 63/228 (27%), Positives = 98/228 (42%), Gaps = 29/228 (12%)
Query: 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164
S+ LT K + + + A G + +GP +GKST ++ I G LP +
Sbjct: 2 SIRVSSLT-----KLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDS 56
Query: 165 RMYGEVFVNG------AKSEMPYGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFCQ 217
G V V G K + G++ L + VREYL + A + + G
Sbjct: 57 ---GSVQVCGEDVLQNPKEVQR--NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKG--QL 109
Query: 218 RKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYH 277
K VE+ I + L +K IG L G R+RV +A+ L+ P VL +DEP
Sbjct: 110 LKQRVEEMIELVGLRPEQHKKIGQ------LSKGYRQRVGLAQALIHDPKVLILDEPTTG 163
Query: 278 LDSVSALLMMVTLKKLASTGCTLLFT-INQSSTEVFGLFDRICLLSNG 324
LD + + +K + +L T I Q EV + DR+ +++ G
Sbjct: 164 LDPNQLVEIRNVIKNIGKDKTIILSTHIMQ---EVEAICDRVIIINKG 208
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 4e-11
Identities = 72/234 (30%), Positives = 111/234 (47%), Gaps = 32/234 (13%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYG--SYGFVERETT 192
G V +GP+ GKSTLLR IAG ++ G++F+ + +++P G V +
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLEDITS---GDLFIGEKRMNDVPPAERGVGMVFQSYA 85
Query: 193 LIGSLTVREYLYYSALLQLPGF----FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248
L L+V E + + L+L G QR N V + + L D K + G
Sbjct: 86 LYPHLSVAENMSFG--LKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSG------- 136
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQS 307
G+R+RV I R LV P V +DEPL +LD+ + M + + +L G T+++ +
Sbjct: 137 --GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY-VTHD 193
Query: 308 STEVFGLFDRICLLSNGNTLFFGETLACLQHF-SN---AGFPCPIMQSPSDHFL 357
E L D+I +L G G+ L L H+ +N AGF + SP +FL
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKPLE-LYHYPANRFVAGF----IGSPKMNFL 242
|
Length = 369 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 4e-11
Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 38/215 (17%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-----------AKSEMPYGS 183
G + ++G +GK+TLL+ I G + + G + +G A+ +
Sbjct: 28 RGEIVALLGRNGAGKTTLLKTIMGLVRPRS---GRIIFDGEDITGLPPHERARLGI---- 80
Query: 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-----SLSDYANKL 238
+V + LTV E L L + + K E + + L + N+
Sbjct: 81 -AYVPEGRRIFPRLTVEEN------LLLGAYARRDKEAQERDLEEVYELFPRLKERRNQR 133
Query: 239 IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTG 297
G + G GE++ + IAR L+ RP +L +DEP L + +K+L G
Sbjct: 134 AG---TLSG---GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGG 187
Query: 298 CTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
T+L + Q++ + DR +L NG + G
Sbjct: 188 MTILL-VEQNARFALEIADRGYVLENGRIVLSGTA 221
|
Length = 237 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 6e-11
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 19/195 (9%)
Query: 143 GPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP-YG----SYGFVERETTLIGS 196
GP +GK+T I G + + G++ ++G +++P + G++ +E ++
Sbjct: 33 GPNGAGKTTTFYMIVGLVKPDS---GKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89
Query: 197 LTVREYLYYSALLQLPGF-FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255
LTV E + A+L++ G +R+ +E+ + ++ L GERRR
Sbjct: 90 LTVEENI--LAVLEIRGLSKKEREEKLEELLEEFHITHLRKSK----AS--SLSGGERRR 141
Query: 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315
V IAR L P L +DEP +D ++ + +K L G +L T + + E +
Sbjct: 142 VEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLIT-DHNVRETLSIT 200
Query: 316 DRICLLSNGNTLFFG 330
DR ++ G L G
Sbjct: 201 DRAYIIYEGKVLAEG 215
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 7e-11
Identities = 48/228 (21%), Positives = 96/228 (42%), Gaps = 40/228 (17%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++++ + K ++ + G + + G +GK+TL + +AG + S+ G
Sbjct: 3 ENISFSYKKGTE----ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS---G 55
Query: 169 EVFVNG--AKSEMPYGSYGFVERETTL-IGSLTVREYLYYSALLQLPGFFCQRKNVVEDA 225
+ +NG K++ S G+V ++ + + +VRE L L +L E
Sbjct: 56 SILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLG-LKELDA----GNEQAETV 110
Query: 226 IHAMSLSDYANK----LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP-----LY 276
+ + L + L G G+++R+ IA L+ +L DEP
Sbjct: 111 LKDLDLYALKERHPLSLSG----------GQKQRLAIAAALLSGKDLLIFDEPTSGLDYK 160
Query: 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
+++ V L +++LA+ G + I + + DR+ LL+NG
Sbjct: 161 NMERVGEL-----IRELAAQG-KAVIVITHDYEFLAKVCDRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 24/178 (13%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG------AKSEMPY--GSYGF 186
G + GP+ +GKSTLL+ I G + G++ VNG E+P+ G
Sbjct: 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGV 83
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQR---KNVVEDAIHAMSLSDYANKLIGGHC 243
V ++ L+ TV E + L++ G + V + + + L A
Sbjct: 84 VFQDFRLLPDRTVYENVALP--LRVIGK--PPREIRRRVSEVLDLVGLKHKA------RA 133
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
L GE++RV IAR +V +P VL DEP +LD + +M +++ G T+L
Sbjct: 134 LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVL 191
|
Length = 223 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-10
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 12/160 (7%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G + V++GP+ GK+TLL IAG +P+ G + ++G E P G V + L+
Sbjct: 26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQH---GSITLDGKPVEGPGAERGVVFQNEGLL 82
Query: 195 GSLTVREYLYYSALLQLPGF-FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253
V++ + + LQL G QR + + + L Y+ L G+R
Sbjct: 83 PWRNVQDNVAFG--LQLAGVEKMQRLEIAHQMLKKVGLEGA------EKRYIWQLSGGQR 134
Query: 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
+RV IAR L P +L +DEP LD+ + M L KL
Sbjct: 135 QRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKL 174
|
Length = 255 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 69/235 (29%), Positives = 100/235 (42%), Gaps = 19/235 (8%)
Query: 95 AAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLL 153
A A S V DL K Y DK V + + + G ++GP +GKST+
Sbjct: 28 EAKASIPGSMSTVAIDLAGVSKS---YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIA 84
Query: 154 RAIAGRLPHSARMYGEVFVNG----AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALL 209
R I G A G++ V G A++ + G V + L TVRE LL
Sbjct: 85 RMILGMTSPDA---GKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRE-----NLL 136
Query: 210 QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVL 269
+F +E I SL ++A + L G +RR+ +AR L+ P +L
Sbjct: 137 VFGRYFGMSTREIEAVIP--SLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLL 194
Query: 270 FIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
+DEP LD + L+ L+ L + G T+L T E L DR+C+L G
Sbjct: 195 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLT-THFMEEAERLCDRLCVLEAG 248
|
Length = 340 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 3e-10
Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMY--GEVFVNGAKSEMPYGSYGFVERET 191
G I+GP+ +GKSTLL IAG L P S + G+ S P S F +E
Sbjct: 24 RGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPV-SMLF--QEN 80
Query: 192 TLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
L LTV + + L PG ++ + M + D +L G L
Sbjct: 81 NLFSHLTVAQNI---GLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG------QLS 131
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLD 279
G+R+RV +AR LV +L +DEP LD
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 61/214 (28%), Positives = 90/214 (42%), Gaps = 30/214 (14%)
Query: 131 GYALPGT-MTVIMGPAKSGKSTLLRAIAG-RLPHSARMY--GEVFVNGAKSEM--PYG-S 183
+ LP +T + GP+ SGK++L+ IAG P R+ G V V+ K P
Sbjct: 18 NFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRR 77
Query: 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-----LSDYANKL 238
G+V ++ L TVR L Y + F D + A+ L Y L
Sbjct: 78 IGYVFQDARLFPHYTVRGNLRYGMWKSMRAQF--------DQLVALLGIEHLLDRYPGTL 129
Query: 239 IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGC 298
GG E++RV I R L+ P +L +DEPL LD ++ L++L
Sbjct: 130 SGG----------EKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEIN 179
Query: 299 TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
+ ++ S EV L DR+ +L NG G
Sbjct: 180 IPILYVSHSLDEVLRLADRVVVLENGKVKASGPL 213
|
Length = 352 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 3e-10
Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 23/201 (11%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGS--YG--FVE 188
PG + ++G +GKSTL++ ++G P + GE+ ++G P + G V
Sbjct: 33 PGEVHALLGENGAGKSTLMKILSGVYPPDS---GEILIDGKPVAFSSPRDALAAGIATVH 89
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDA---IHAMSLSDYANKLIGGHCYM 245
+E +L+ +L+V E ++ RK + A + + L + L+G
Sbjct: 90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGD---- 145
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS--VSALLMMVTLKKLASTGCTLLFT 303
L +R+ V IAR L VL +DEP L L ++ ++L + G +++
Sbjct: 146 --LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLI--RRLKAQGVAIIY- 200
Query: 304 INQSSTEVFGLFDRICLLSNG 324
I+ EVF + DRI +L +G
Sbjct: 201 ISHRLDEVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 4e-10
Identities = 57/204 (27%), Positives = 90/204 (44%), Gaps = 45/204 (22%)
Query: 141 IMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAK-SEMP---------YGSYGFVER 189
++GP+ GK+T+LR IAG P S G + ++G + +P + SY
Sbjct: 45 LLGPSGCGKTTVLRLIAGFETPDS----GRIMLDGQDITHVPAENRHVNTVFQSYA---- 96
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQR------KNVVEDAIHAMSLSDYANKLIGGHC 243
L +TV E + + G Q+ V +A+ + L ++A +
Sbjct: 97 ---LFPHMTVFENVAF-------GLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP---- 142
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLF 302
L G+++RV IAR +V +P VL +DE L LD M LK L G T +F
Sbjct: 143 --HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVF 200
Query: 303 -TINQSSTEVFGLFDRICLLSNGN 325
T +Q E + DRI ++ +G
Sbjct: 201 VTHDQE--EALTMSDRIVVMRDGR 222
|
Length = 375 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 4e-10
Identities = 60/223 (26%), Positives = 93/223 (41%), Gaps = 37/223 (16%)
Query: 121 YSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKS 177
Y K + + +LP G +T ++GP GKSTLL+ A RL P S G VF+
Sbjct: 12 YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQS----GTVFLGDK-- 64
Query: 178 EMPYGSYG---------FVERETTLIGSLTVREYLYY--SALLQLPGFFCQR-KNVVEDA 225
P + + +TVRE + Y S L L G V A
Sbjct: 65 --PISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQA 122
Query: 226 IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD---SVS 282
+ ++ A++ + L G+R+R +A L V+ +DEP +LD V
Sbjct: 123 MEQTRINHLADRRL------TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVE 176
Query: 283 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
+ +M L T T+L +NQ+S D + +L+NG+
Sbjct: 177 LMRLMRELNTQGKTVVTVLHDLNQASRYC----DHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 5e-10
Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 18/185 (9%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
PG +I G + +GK++LLRA+AG P +G + MP S + +
Sbjct: 418 PGERLLITGESGAGKTSLLRALAGLWP-----WGS-----GRISMPADSALLFLPQRPYL 467
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254
T+RE L Y + +H + L D A +L + + L GE++
Sbjct: 468 PQGTLREALCYPNAAPDFS-----DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQ 522
Query: 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314
R+ AR L+ +P +F+DE LD + + LK+ T++ ++ + F
Sbjct: 523 RLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE-ELPDATVISVGHRPTLWNF-- 579
Query: 315 FDRIC 319
R
Sbjct: 580 HSRQL 584
|
Length = 604 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 52/166 (31%), Positives = 73/166 (43%), Gaps = 26/166 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG---------AKSEMPYGSY 184
G I+GP+ SGKSTLL +AG P S GEV + G A++ +
Sbjct: 35 RGETVAIVGPSGSGKSTLLAVLAGLDDPSS----GEVRLLGQPLHKLDEDARAALRARHV 90
Query: 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY 244
GFV + LI +LT E + L+ + + + A+ L H Y
Sbjct: 91 GFVFQSFHLIPNLTALENVALPLELRGESS-ADSRAGAKALLEAVGLGKRLT-----H-Y 143
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-----SVSALL 285
L GE++RV +AR RP VLF DEP +LD ++ LL
Sbjct: 144 PAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 6e-10
Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 30/176 (17%)
Query: 117 GKRRYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175
G RR D V + + PG ++GP +GKSTL ++ RL + G++ V G
Sbjct: 12 GARRALDDV-----SFTVRPGRFVALLGPNGAGKSTLF-SLLTRLYVAQE--GQISVAGH 63
Query: 176 --KSEMP--YGSYGFVERETTLIGSLTVREYL-YYSALLQLPGFFCQRKNVVEDAIHAMS 230
+ G V ++ TL L+VR+ L Y++AL L + + + + + +
Sbjct: 64 DLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSR--AEARARIAELLARLG 121
Query: 231 LSDYAN----KLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
L++ A+ +L GGH RRRV IAR L+ RP +L +DEP LD S
Sbjct: 122 LAERADDKVRELNGGH----------RRRVEIARALLHRPALLLLDEPTVGLDPAS 167
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 6e-10
Identities = 60/246 (24%), Positives = 99/246 (40%), Gaps = 36/246 (14%)
Query: 111 LTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
L K R S + V+ + G + +G +GKST L+ + G L ++ G+V
Sbjct: 26 LNHFFHRKER-SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS---GKV 81
Query: 171 FVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS 230
VNG + P+ R L+ + + L++ LP V I+ +
Sbjct: 82 RVNG---KDPFRRREEYLRSIGLV--MGQKLQLWWD----LP---ALDSLEVLKLIYEIP 129
Query: 231 LSDYANKL--------IGGHCY--MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
++A +L + G ++ L G+R R +A L+ P VLF+DEP LD
Sbjct: 130 DDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189
Query: 281 VSALLMMVTLKKLAST-GCTLLFTINQSSTEVFG----LFDRICLLSNGNTLFFGETLAC 335
+ + LK+ T+L T T +F L DR+ L+ G +F G
Sbjct: 190 NAQANIREFLKEYNEERQATVLLT-----THIFDDIATLCDRVLLIDQGQLVFDGTLAQL 244
Query: 336 LQHFSN 341
+ F
Sbjct: 245 QEQFGP 250
|
Length = 325 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 6e-10
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 11/148 (7%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGS--YGFVERET 191
G + +MGP+ GKSTLL + G L GE+++N + +M P G + ++
Sbjct: 27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDA 86
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251
L L+V + L ++ L G R+N A+ L H L G
Sbjct: 87 LLFPHLSVGQNLLFALPATLKGN--ARRNAANAALERSGLDGAF------HQDPATLSGG 138
Query: 252 ERRRVRIARELVMRPHVLFIDEPLYHLD 279
+R RV + R L+ +P L +DEP LD
Sbjct: 139 QRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 7e-10
Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 25/236 (10%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARM 166
DL+V K K + S + P +T ++GP+ SGKSTLLR+I L +
Sbjct: 9 SDLSVYYNKK-----KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTI 63
Query: 167 YGEVFVNGAKSEMPYGSYGFVERETTLIGS------LTVREYLYYSALLQLPGFFCQRK- 219
G + NG P + +E ++ +++ E + Y L+L G ++
Sbjct: 64 TGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYG--LRLKGIKDKQVL 121
Query: 220 -NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278
VE ++ S+ D + H GL G+++RV IAR L P ++ +DEP L
Sbjct: 122 DEAVEKSLKGASIWDEVKDRL--HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSAL 179
Query: 279 DSVSALLMMVTLKKLASTGCTLLFT--INQSSTEVFGLFDRICLLSNGNTLFFGET 332
D +SA + TL L LL T + Q+S + DR +G+ + + +T
Sbjct: 180 DPISAGKIEETLLGLKDDYTMLLVTRSMQQASR----ISDRTGFFLDGDLIEYNDT 231
|
Length = 252 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 8e-10
Identities = 59/200 (29%), Positives = 92/200 (46%), Gaps = 29/200 (14%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGS--YGFVERETT 192
G ++GP+ GK+TLLR IAG +A G ++ G + +P YG V +
Sbjct: 30 GEFVCLLGPSGCGKTTLLRIIAGLERQTA---GTIYQGGRDITRLPPQKRDYGIVFQSYA 86
Query: 193 LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG----GHCYMKGL 248
L +LTV + + Y G + E A L D L+G Y L
Sbjct: 87 LFPNLTVADNIAY-------GLKNRGMGRAEVAERVAELLD----LVGLPGSERKYPGQL 135
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDS-VSALL---MMVTLKKLASTGCTLLFTI 304
G+++RV +AR L P +L +DEPL LD+ V L + ++L T T++ T
Sbjct: 136 SGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVT--TIMVTH 193
Query: 305 NQSSTEVFGLFDRICLLSNG 324
+Q E + DRI ++++G
Sbjct: 194 DQE--EALSMADRIVVMNHG 211
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 1e-09
Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 54/215 (25%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
PG I+G + SGKSTLL+ + G G + ++G + I
Sbjct: 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ---GRILLDG--------------VDLNDI 540
Query: 195 GSLTVREYLYYSALLQLPGFFCQ--RKNV--------VEDAIHAMSLSDYANKLIGGHCY 244
++R + Y +LQ P F R+N+ E+ I A +L G H +
Sbjct: 541 DLASLRRQVGY--VLQDPFLFSGSIRENIALGNPEATDEEIIEAA-------QLAGAHEF 591
Query: 245 MKGLPC---------------GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 289
++ LP G+R+R+ +AR L+ +P +L +DE LD + +++
Sbjct: 592 IENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN 651
Query: 290 LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
L ++ G T++ ++ ST DRI +L G
Sbjct: 652 LLQIL-QGRTVIIIAHRLST--IRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-09
Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 45/191 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
PG I+GP+ SGKSTL R I G L ++ G V ++GA + +
Sbjct: 27 PGESLAIIGPSGSGKSTLARLILGLLRPTS---GRVRLDGA--------------DISQW 69
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254
+ +++ Y L Q +D + + S+++ N L G G+R+
Sbjct: 70 DPNELGDHVGY--LPQ------------DDELFSGSIAE--NILSG----------GQRQ 103
Query: 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314
R+ +AR L P +L +DEP HLD + + L + G T + ++ T
Sbjct: 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPET--LAS 161
Query: 315 FDRICLLSNGN 325
DRI +L +G
Sbjct: 162 ADRILVLEDGR 172
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 1e-09
Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 26/201 (12%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEM--PY---GSYGFVE 188
G I+G SGKSTLL+ +AG P S G V ++G P + G+V
Sbjct: 29 AGEKVAIIGRVGSGKSTLLKLLAGLYKPTS----GSVLLDGTDIRQLDPADLRRNIGYVP 84
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM--- 245
++ TL T+R+ + A L + A ++D+ NK G
Sbjct: 85 QDVTLF-YGTLRDNITLGAPLA-------DDERILRAAELAGVTDFVNKHPNGLDLQIGE 136
Query: 246 --KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
+GL G+R+ V +AR L+ P +L +DEP +D S + L++L ++ T
Sbjct: 137 RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIIT 196
Query: 304 INQSSTEVFGLFDRICLLSNG 324
S + L DRI ++ +G
Sbjct: 197 HRPS---LLDLVDRIIVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 1e-09
Identities = 54/211 (25%), Positives = 83/211 (39%), Gaps = 31/211 (14%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
K+L+V+ K + + G ++G + SGKSTL RAI G G
Sbjct: 5 KNLSVSFPTGGGSV-KALDDVSFSIKKGETLGLVGESGSGKSTLARAILG---LLKPTSG 60
Query: 169 EVFVNG-AKSEMPYGSYGFVERETTLI-----GSL----TVREYLYYSALLQLPGF-FCQ 217
+ +G ++ +E ++ SL T+ E + +
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120
Query: 218 RKNVVEDAIHAMSLSD-----YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272
RK V + + L + Y ++L GG +R+RV IAR L + P +L D
Sbjct: 121 RKEAVLLLLVGVGLPEEVLNRYPHELSGG----------QRQRVAIARALALNPKLLIAD 170
Query: 273 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLF 302
EP LD ++ LKKL G TLLF
Sbjct: 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLF 201
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 1e-09
Identities = 55/235 (23%), Positives = 109/235 (46%), Gaps = 25/235 (10%)
Query: 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163
A++ K+L KG+R D + ++G + ++GP +GK+T + G +P
Sbjct: 2 ATLTAKNLAKAYKGRRVVEDVSLTVNSG-----EIVGLLGPNGAGKTTTFYMVVGIVPRD 56
Query: 164 ARMYGEVFVNGAK-SEMPYGS-----YGFVERETTLIGSLTVREYLYYSALLQLPGFFC- 216
A G + ++ S +P + G++ +E ++ L+V + L A+LQ+
Sbjct: 57 A---GNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSA 111
Query: 217 -QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275
QR++ + + + + + + L GERRRV IAR L P + +DEP
Sbjct: 112 EQREDRANELMEEFHIEHLRDSM------GQSLSGGERRRVEIARALAANPKFILLDEPF 165
Query: 276 YHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
+D +S + + ++ L +G +L T + + E + +R ++S G+ + G
Sbjct: 166 AGVDPISVIDIKRIIEHLRDSGLGVLIT-DHNVRETLAVCERAYIVSQGHLIAHG 219
|
Length = 241 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 30/206 (14%)
Query: 119 RRYSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--- 174
+ Y KVV +P G +T I+GP +GKSTLL ++ L + GE+ ++G
Sbjct: 9 KSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS---GEITIDGLEL 65
Query: 175 --AKSEMPYGSYGFVERETTLIGSLTVRE------YLYYSALLQLPGFFCQRKNVVEDAI 226
S+ +++E + LTVR+ + Y L + + ++ +AI
Sbjct: 66 TSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTK-----EDRRIINEAI 120
Query: 227 HAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286
+ L D +++ Y+ L G+R+R IA L + +DEPL +LD ++ +
Sbjct: 121 EYLHLEDLSDR------YLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQI 174
Query: 287 MVTLKKLAS----TGCTLLFTINQSS 308
M L++LA T +L IN +S
Sbjct: 175 MKILRRLADELGKTIVVVLHDINFAS 200
|
Length = 252 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-09
Identities = 65/261 (24%), Positives = 112/261 (42%), Gaps = 40/261 (15%)
Query: 86 LPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPA 145
L P E K S+ +++++ + GK+ V+K + PG I+GP+
Sbjct: 309 LDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKK----PVLKDISFSIEPGEKVAIVGPS 364
Query: 146 KSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSY----GFVERETTLIGSLTVR 200
SGKSTL++ + ++ GE+ ++G ++ S G V ++ L S T+R
Sbjct: 365 GSGKSTLIKLLLRLYDPTS---GEILIDGIDIRDISLDSLRKRIGIVSQDPLLF-SGTIR 420
Query: 201 EYLYYSALLQLPGFFCQRKNVVEDAIHA-----------MSLSDYANKLIGGHCYMKGLP 249
E + R + ++ I +L D + ++G L
Sbjct: 421 ENIALG-----------RPDATDEEIEEALKLANAHEFIANLPDGYDTIVGER--GVNLS 467
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309
G+R+R+ IAR L+ P +L +DE LD+ + L+ LKKL TL+ S+
Sbjct: 468 GGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTI 527
Query: 310 EVFGLFDRICLLSNGNTLFFG 330
+ DRI +L NG + G
Sbjct: 528 K---NADRIIVLDNGRIVERG 545
|
Length = 567 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-09
Identities = 49/210 (23%), Positives = 79/210 (37%), Gaps = 63/210 (30%)
Query: 99 RKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158
G + +++++T+ R G ++G +GKSTLL+ +AG
Sbjct: 10 SLAYGDRPLLENVSLTLNPGERI--------------G----LVGRNGAGKSTLLKILAG 51
Query: 159 RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQR 218
L + GEV G++ +E L TV +Y+ + GF R
Sbjct: 52 ELEPDS---GEVTRPKGLRV------GYLSQEPPLDPEKTVLDYV-------IEGFGELR 95
Query: 219 KNVVEDAIHAMSLSDYANKL----------IGGHCY-------MKGLPC----------- 250
+ + E L+D ++L + G + GL
Sbjct: 96 ELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLS 155
Query: 251 -GERRRVRIARELVMRPHVLFIDEPLYHLD 279
G RRRV +AR L+ P +L +DEP HLD
Sbjct: 156 GGWRRRVALARALLEEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-09
Identities = 63/240 (26%), Positives = 100/240 (41%), Gaps = 29/240 (12%)
Query: 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161
G ++ ++++ T G+ K +K+ N G I+G + SGKSTLL+ +AG
Sbjct: 333 TGQALELRNVSFTYPGQ---QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD 389
Query: 162 HSARMYGEVFVNGAKSEMPYGSYGFVERETTL---IGSLTVREYLYYSALLQLPGFFCQR 218
G + +NG + S E L I LT R +L+ L
Sbjct: 390 PQQ---GSITLNG----VEIASL----DEQALRETISVLTQRVHLFSGTLRDNLRLANPD 438
Query: 219 KNVVE--DAIHAMSLSDYANKLIGG-HCYM----KGLPCGERRRVRIARELVMRPHVLFI 271
+ E A+ + L G + ++ + L GERRR+ +AR L+ + +
Sbjct: 439 ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLL 498
Query: 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLF-TINQSSTEVFGLFDRICLLSNGNTLFFG 330
DEP LD ++ ++ L + A G TLL T E DRI +L NG + G
Sbjct: 499 DEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRGLER---MDRIIVLDNGKIIEEG 554
|
Length = 573 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 3e-09
Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 32/205 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG---------AKSEMPYGSY 184
G + I+G + SGKSTLL + G P S GEV NG ++++
Sbjct: 30 KGEIVAIVGSSGSGKSTLLHLLGGLDNPTS----GEVLFNGQSLSKLSSNERAKLRNKKL 85
Query: 185 GFVERETTLIGSLTVREYLYYSALLQLPGFF--CQRKNVVEDAIHAMSLSDYANKLIGGH 242
GF+ + L+ T E + L+ G + K + + + L N
Sbjct: 86 GFIYQFHHLLPDFTALENVAMPLLI---GKKSVKEAKERAYEMLEKVGLEHRINH----- 137
Query: 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKKLASTGCT 299
L GER+RV IAR LV +P ++ DEP +LD+ +A + +M+ L + +T
Sbjct: 138 -RPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTS-- 194
Query: 300 LLFTINQSSTEVFGLFDRICLLSNG 324
F + E+ DR+ + +G
Sbjct: 195 --FLVVTHDLELAKKLDRVLEMKDG 217
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 4e-09
Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 42/210 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG-------------AKSEMP 180
G + I+G + +GKSTL+R I G P S G V V+G A+ +
Sbjct: 30 KGEIFGIIGRSGAGKSTLIRCINGLERPTS----GSVLVDGTDLTLLSGKELRKARRRI- 84
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGF-FCQRKNVVEDAIHAMSLSDYANKLI 239
G + + L+ S TV E + L++ G + + V + + + L D A+
Sbjct: 85 ----GMIFQHFNLLSSRTVFENVALP--LEIAGVPKAEIEERVLELLELVGLEDKADA-- 136
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-----SVSALLMMVTLKKLA 294
Y L G+++RV IAR L P VL DE LD S+ ALL + ++L
Sbjct: 137 ----YPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDIN-REL- 190
Query: 295 STGCTLLFTINQSSTEVFGLFDRICLLSNG 324
G T++ ++ V + DR+ ++ G
Sbjct: 191 --GLTIVLITHEMEV-VKRICDRVAVMEKG 217
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 4e-09
Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 38/208 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVE--RET 191
G + I+G + +GKSTLLR I P S G VFV+G + + ++
Sbjct: 31 KGEIFGIIGYSGAGKSTLLRLINLLERPTS----GSVFVDG-QDLTALSEAELRQLRQKI 85
Query: 192 TLI-------GSLTVREYLYYSALLQLPGFF---CQRKNVVEDAIHAMSLSDYANKLIGG 241
+I S TV E + + L+L G +++ V + + + LSD A++
Sbjct: 86 GMIFQHFNLLSSRTVFENVAFP--LELAGVPKAEIKQR--VAELLELVGLSDKADR---- 137
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-----SVSALLMMVTLKKLAST 296
Y L G+++RV IAR L P +L DE LD S+ LL + ++L
Sbjct: 138 --YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDIN-REL--- 191
Query: 297 GCTLLFTINQSSTEVFGLFDRICLLSNG 324
G T++ I V + DR+ +L G
Sbjct: 192 GLTIVL-ITHEMEVVKRICDRVAVLDQG 218
|
Length = 339 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 5e-09
Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 35/199 (17%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS----------YG 185
G M I+G + SGKSTLL I + G+V++NG + P S G
Sbjct: 24 GKMYAIIGESGSGKSTLLNIIGLLEKFDS---GQVYLNG-QETPPLNSKKASKFRREKLG 79
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVE------DAIHAMSLSDYANKLI 239
++ + LI + TV E L L L ++ + E +A+ + L+ + I
Sbjct: 80 YLFQNFALIENETVEENL----DLGLKY---KKLSKKEKREKKKEALEKVGLNLKLKQKI 132
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
Y L GE++RV +AR ++ P ++ DEP LD + ++ L +L G T
Sbjct: 133 ----YE--LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKT 186
Query: 300 LLFTINQSSTEVFGLFDRI 318
++ I EV DR+
Sbjct: 187 II--IVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 6e-09
Identities = 59/234 (25%), Positives = 113/234 (48%), Gaps = 40/234 (17%)
Query: 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAG-RLPHS 163
VV K++T +R+ V + + GTM ++GP+ GK+T+LR +AG P
Sbjct: 7 VVLKNIT------KRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE 60
Query: 164 ARMYGEVFVNG---AKSE-------MPYGSYGFVERETTLIGSLTVREYLYYS-ALLQLP 212
G++F++G M + SY L +++ E + Y +L +P
Sbjct: 61 ----GQIFIDGEDVTHRSIQQRDICMVFQSYA-------LFPHMSLGENVGYGLKMLGVP 109
Query: 213 GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272
+RK V++A+ + L+ + ++ Y+ + G+++RV +AR L+++P VL D
Sbjct: 110 K--EERKQRVKEALELVDLAGFEDR------YVDQISGGQQQRVALARALILKPKVLLFD 161
Query: 273 EPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
EPL +LD+ M +++L T L+ + +E F + D + +++ G
Sbjct: 162 EPLSNLDANLRRSMREKIRELQQQFNITSLY-VTHDQSEAFAVSDTVIVMNKGK 214
|
Length = 351 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 8e-09
Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 39/196 (19%)
Query: 98 ARKIAGASVVW-KDLTVTIKGKR----RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTL 152
K G V+ ++++ G R S ++ G I+GP +GKSTL
Sbjct: 313 PGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRID--------RGDRIAIVGPNGAGKSTL 364
Query: 153 LRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET-TLIGSLTVREYLYYSALLQL 211
L+ +AG L + G V G ++ G+ ++ L TV E L
Sbjct: 365 LKLLAGELGPLS---GTV-KVGETVKI-----GYFDQHRDELDPDKTVLEEL-------S 408
Query: 212 PGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLF 270
GF + V + + + K + L GE+ R+ +A+ L+ P++L
Sbjct: 409 EGFPDGDEQEVRAYLGRFGFTGEDQEKPV------GVLSGGEKARLLLAKLLLQPPNLLL 462
Query: 271 IDEPLYHLD--SVSAL 284
+DEP HLD S+ AL
Sbjct: 463 LDEPTNHLDIESLEAL 478
|
Length = 530 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 9e-09
Identities = 62/261 (23%), Positives = 98/261 (37%), Gaps = 48/261 (18%)
Query: 59 RVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGK 118
RV + I A P P AV ++ +DL+ G
Sbjct: 299 RVRAAAERIVEVLDAAGPV---------AEGSAPAAGAVGLG--KPTLELRDLSAGYPG- 346
Query: 119 RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE 178
+ V+ + PG I+GP+ SGKSTLL +AG L GEV ++G
Sbjct: 347 ---APPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQ---GEVTLDGVPVS 400
Query: 179 MPYGSY-----GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM---- 229
++ L + TVRE L + R + ++ + A
Sbjct: 401 SLDQDEVRRRVSVCAQDAHLFDT-TVRENLRLA-----------RPDATDEELWAALERV 448
Query: 230 -------SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
+L D + ++G L GER+R+ +AR L+ +L +DEP HLD+ +
Sbjct: 449 GLADWLRALPDGLDTVLGEGG--ARLSGGERQRLALARALLADAPILLLDEPTEHLDAET 506
Query: 283 ALLMMVTLKKLASTGCTLLFT 303
A ++ L S +L T
Sbjct: 507 ADELLEDLLAALSGRTVVLIT 527
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 1e-08
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 36/155 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-----------AKSEMPYGS 183
G +T ++G GK+TLL+ + G LP + G + ++G A++ + Y
Sbjct: 25 KGEVTCVLGRNGVGKTTLLKTLMGLLPVKS---GSIRLDGEDITKLPPHERARAGIAYVP 81
Query: 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ--RKNVVEDAIHAM--SLSDYANKLI 239
G RE + LTV E L L G R + D I+ + L + +
Sbjct: 82 QG---RE--IFPRLTVEENL-------LTGLAALPRRSRKIPDEIYELFPVLKEMLGRR- 128
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
GG L G+++++ IAR LV RP +L +DEP
Sbjct: 129 GGD-----LSGGQQQQLAIARALVTRPKLLLLDEP 158
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGS 183
V+K N PG I+GP +GK+TL+ + G++ ++G ++ S
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQK---GQILIDGIDIRDISRKS 74
Query: 184 Y----GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLI 239
G V ++T L S T+ E + V +A D+ KL
Sbjct: 75 LRSMIGVVLQDTFLF-SGTIMENIRLGRPNA-------TDEEVIEAAKEAGAHDFIMKLP 126
Query: 240 GGHCYM-----KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
G+ + L GER+ + IAR ++ P +L +DE ++D+ + L+ L+KL
Sbjct: 127 NGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL- 185
Query: 295 STGCTLLFTINQSSTEVFGLFDRICLLSNG 324
G T + ++ ST D+I +L +G
Sbjct: 186 MKGRTSIIIAHRLSTIKNA--DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 50/213 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
G ++GP+ SGKSTL+ I R Y G + ++G + S G
Sbjct: 27 AGETVALVGPSGSGKSTLVNLIP-------RFYDVDSGRILIDGHDVRDYTLASLRRQIG 79
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV----VEDAIHAMSLSDYANKLIGG 241
V ++ L + TV E + Y R VE+A A + ++ +L G
Sbjct: 80 LVSQDVFLF-NDTVAENIAYG-----------RPGATREEVEEAARAANAHEFIMELPEG 127
Query: 242 HCYMKG-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 296
+ + G L G+R+R+ IAR L+ P +L +DE LD+ S L+ L++L
Sbjct: 128 YDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKN 187
Query: 297 GCTL-----LFTINQSSTEVFGLFDRICLLSNG 324
T L TI + DRI +L +G
Sbjct: 188 RTTFVIAHRLSTIENA--------DRIVVLEDG 212
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 2e-08
Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 24/201 (11%)
Query: 121 YSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM 179
Y V + +P G T I+GP GKSTLLR ++ RL A +G V+++G +
Sbjct: 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS-RLMTPA--HGHVWLDGEHIQH 73
Query: 180 PYGS------YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK---NVVEDAIHAMS 230
Y S G + + T G +TV+E + P F RK V A+ A
Sbjct: 74 -YASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATG 132
Query: 231 LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290
++ A++ + L G+R+R IA L ++ +DEP LD + ++ L
Sbjct: 133 ITHLADQSV------DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELL 186
Query: 291 KKLAST-GCTL---LFTINQS 307
+L G TL L +NQ+
Sbjct: 187 SELNREKGYTLAAVLHDLNQA 207
|
Length = 265 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 31/208 (14%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
KDL V ++GK+ +++K N G + IMGP SGKSTL I G P G
Sbjct: 7 KDLHVEVEGKK----EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH-PKYEVTEG 61
Query: 169 EVFVNGAK-SEMPYGSYGFVER----------ETTLIGSLTVREYL--YYSALLQLPGFF 215
E+ +G E+ ER I +T ++L +A G
Sbjct: 62 EILFDGEDILELSPD-----ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGIL 116
Query: 216 CQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
+ +++ + L ++ + + +G GE++R I + L++ P + +DEP
Sbjct: 117 PEFIKELKEKAELLGLDEEFLERYVN-----EGFSGGEKKRNEILQLLLLEPKLAILDEP 171
Query: 275 LYHLDSVSALLMMV-TLKKLASTGCTLL 301
LD + AL ++ + L G +L
Sbjct: 172 DSGLD-IDALKIVAEGINALREEGRGVL 198
|
Length = 251 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 3e-08
Identities = 48/163 (29%), Positives = 72/163 (44%), Gaps = 32/163 (19%)
Query: 141 IMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI---- 194
+MGP+ GKSTLLR L AR+ GEV + G P V RE ++
Sbjct: 35 LMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYP 94
Query: 195 ---GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-----------LSDYANKLIG 240
LT+ + + ++L G +K + E A+ L+DY + L G
Sbjct: 95 NPFPHLTIYDNVAIG--VKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSG 152
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
G +R+R+ IAR L M+P +L +DEP ++D V
Sbjct: 153 G----------QRQRLVIARALAMKPKILLMDEPTANIDPVGT 185
|
Length = 253 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 20/198 (10%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGS-YGFVERE 190
G++ ++GP +GK+TLLRAI G L +A G V V G A S V ++
Sbjct: 29 GSLVGLVGPNGAGKTTLLRAINGTLTPTA---GTVLVAGDDVEALSARAASRRVASVPQD 85
Query: 191 TTLIGSLTVR---EYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247
T+L VR E + + + VE A+ ++ +A++ +
Sbjct: 86 TSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV------TS 139
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307
L GER+RV +AR L VL +DEP LD + + +++L G T + I+
Sbjct: 140 LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIH-- 197
Query: 308 STEVFGLF-DRICLLSNG 324
++ + D + LL++G
Sbjct: 198 DLDLAARYCDELVLLADG 215
|
Length = 402 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 5e-08
Identities = 50/212 (23%), Positives = 94/212 (44%), Gaps = 32/212 (15%)
Query: 448 REWKYYW-------LRLILCMILTLCVGTVFSGLG---HSLSSVVTRVAAIFVFVSFNSL 497
++W YW +R + L VGT+F +G + + + + A++ V F +
Sbjct: 1201 KQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGI 1260
Query: 498 LNIAGVPALMKEIKT--YASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVG 555
N + V ++ +T Y + M+S AL + + Q++ IP++ + + +L+ Y +V
Sbjct: 1261 NNCSTVQPMVAVERTVFYRERAAGMYS-ALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVA 1319
Query: 556 LRDEFSLLMYFV-LNFFMCL-LVNEGLMLV-------VASIWKDVYWSILTLISVHVVMM 606
+ +F ++FF L G+M V VA+I+ ++ + L S
Sbjct: 1320 FEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFS------ 1373
Query: 607 LSAGYFRIRNALPG-PVWTYPISYVAFHTYSI 637
G+F R +P VW Y I VA+ Y +
Sbjct: 1374 ---GFFIPRPKIPKWWVWYYWICPVAWTVYGL 1402
|
Length = 1470 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 5e-08
Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 40/194 (20%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
KDL V++ GK ++K N G + +MGP SGKSTL + I G P G
Sbjct: 4 KDLHVSVGGKE-----ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH-PKYEVTEG 57
Query: 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA 228
E+ G I L E A L G F + E I
Sbjct: 58 EILFKG-----------------EDITDLPPEE----RARL---GIFLAFQYPPE--IPG 91
Query: 229 MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 288
+ +D+ + +G GE++R I + L++ P + +DEP LD + AL ++
Sbjct: 92 VKNADFLRYV------NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLD-IDALRLVA 144
Query: 289 -TLKKLASTGCTLL 301
+ KL G ++L
Sbjct: 145 EVINKLREEGKSVL 158
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 6e-08
Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 20/175 (11%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---SEMPYG--------SY 184
G V++GP+ +GKS+LLR + L R G + + G S+ P +
Sbjct: 28 GETLVLLGPSGAGKSSLLRVL--NLLEMPRS-GTLNIAGNHFDFSKTPSDKAIRDLRRNV 84
Query: 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY 244
G V ++ L LTV+E L + L Q E + + L YA++ Y
Sbjct: 85 GMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADR------Y 138
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
L G+++RV IAR L+M P VL DEP LD ++ +K+LA TG T
Sbjct: 139 PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGIT 193
|
Length = 242 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 7e-08
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 28/187 (14%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEMPY----GSYGFVER 189
PG ++G + SGKST+ + +AG + GE+ +G + E+P S V++
Sbjct: 504 PGQRVALVGGSGSGKSTIAKLVAGLYQPWS---GEILFDGIPREEIPREVLANSVAMVDQ 560
Query: 190 ETTLIGSLTVREYLYY-------SALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH 242
+ L TVR+ L + L++ + + D I + Y +L G
Sbjct: 561 DIFLFEG-TVRDNLTLWDPTIPDADLVR-----ACKDAAIHDVITSRP-GGYDAELAEGG 613
Query: 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 302
+ G G+R+R+ IAR LV P +L +DE LD + ++ L++ GCT +
Sbjct: 614 ANLSG---GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCII 667
Query: 303 TINQSST 309
++ ST
Sbjct: 668 VAHRLST 674
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 61/223 (27%), Positives = 93/223 (41%), Gaps = 37/223 (16%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET-- 191
G I+GP+ SGKSTL R I G P ++ G V ++GA +RET
Sbjct: 342 QAGEALAIIGPSGSGKSTLARLIVGIWPPTS---GSVRLDGA-------DLKQWDRETFG 391
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP-- 249
IG L L+ + + F +N + I A KL G H + LP
Sbjct: 392 KHIGYLPQDVELFPGTVAENIARF--GENADPEKIIE------AAKLAGVHELILRLPDG 443
Query: 250 -------------CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 296
G+R+R+ +AR L P ++ +DEP +LD + +K L +
Sbjct: 444 YDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKAR 503
Query: 297 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339
G T++ ++ S + G D+I +L +G FGE L
Sbjct: 504 GITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLAKL 544
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 7e-08
Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 19/190 (10%)
Query: 121 YSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKS 177
Y DK VK+ N GT+ ++GP+ GK+T LRAI L AR+ G + ++G
Sbjct: 14 YGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDI 73
Query: 178 EMP-------YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK--NVVEDAIHA 228
P G V ++ +++V + + A L+L G + V E ++
Sbjct: 74 YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRG 131
Query: 229 MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL--- 285
+L D + GL G+++R+ IAR L + P +L +DEP LD S
Sbjct: 132 AALWDEVKDRLKTPA--TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIED 189
Query: 286 MMVTLKKLAS 295
+M LKK+ +
Sbjct: 190 LMTDLKKVTT 199
|
Length = 252 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 7e-08
Identities = 61/212 (28%), Positives = 92/212 (43%), Gaps = 16/212 (7%)
Query: 118 KRRYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLPHSA---RMYGEVFVN 173
++RY DK+V + + G ++GP +GK+T LR + G A + GE +
Sbjct: 14 EKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPS 73
Query: 174 GAKSEMPYGSYGFVERETTLIGSLTVREYL-YYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
A+ G V + L TVRE L + L + V + L
Sbjct: 74 RAR--HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL--VPPLLEFAKLE 129
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
+ A+ +G L G +RR+ +AR LV P VL +DEP LD + LM L+
Sbjct: 130 NKADAKVGE------LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRS 183
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
L + G T+L T E L DR+C++ G
Sbjct: 184 LLARGKTILLT-THFMEEAERLCDRLCVIEEG 214
|
Length = 306 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 7e-08
Identities = 61/247 (24%), Positives = 112/247 (45%), Gaps = 31/247 (12%)
Query: 109 KDLTVTIKGK----RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164
++L+ T + + RR + + VK + G I+G SGKSTL + +AG + ++
Sbjct: 8 RNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS 67
Query: 165 RMYGEVFVNGAKSEMPYGSYGFVERETTLI-----GSLTVREYLYYSALLQLPGFFC--- 216
GE+ +N + +G Y F + +I SL R L +L P
Sbjct: 68 ---GEILIND--HPLHFGDYSFRSKRIRMIFQDPNTSLNPR--LRIGQILDFPLRLNTDL 120
Query: 217 ---QRKNVVEDAIHAMSL-SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272
QR+ + + + + L D+AN Y L G+++RV +AR L++RP ++ D
Sbjct: 121 EPEQRRKQIFETLRMVGLLPDHAN------YYPHMLAPGQKQRVALARALILRPKIIIAD 174
Query: 273 EPLYHLD-SVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331
E L LD S+ + L+ + L+ G + ++ + Q + + D++ ++ G + G
Sbjct: 175 EALASLDMSMRSQLINLMLELQEKQGISYIY-VTQHIGMIKHISDQVLVMHEGEVVERGS 233
Query: 332 TLACLQH 338
T L
Sbjct: 234 TADVLAS 240
|
Length = 267 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 7e-08
Identities = 57/210 (27%), Positives = 87/210 (41%), Gaps = 24/210 (11%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
L V KR +V+K + A G + I+G + SGKST LR I S G
Sbjct: 4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE---G 60
Query: 169 EVFVNGAKSEMPYGSYG----FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED 224
+ VNG + G + + L+ + + +++ L +NV+E
Sbjct: 61 SIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN----LWSHMTVLENVMEA 116
Query: 225 AIHAMSLSD---------YANKL-IGGHC---YMKGLPCGERRRVRIARELVMRPHVLFI 271
I + LS Y K+ I Y L G+++RV IAR L M P VL
Sbjct: 117 PIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLF 176
Query: 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
DEP LD ++ +++LA G T++
Sbjct: 177 DEPTSALDPELVGEVLRIMQQLAEEGKTMV 206
|
Length = 257 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 39/208 (18%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-------AKSEMPYGSYGFVE 188
G M ++GP+ SGK+TLLR IAG ++ G + +G A+ GFV
Sbjct: 28 GQMVALLGPSGSGKTTLLRIIAGLEHQTS---GHIRFHGTDVSRLHARDR----KVGFVF 80
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA--------MSLSDYANKLIG 240
+ L +TV + + + L LP +R+ AI A + L+ A++
Sbjct: 81 QHYALFRHMTVFDNIAF-GLTVLP----RRERPNAAAIKAKVTQLLEMVQLAHLADR--- 132
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
Y L G+++RV +AR L + P +L +DEP LD+ + L++L L
Sbjct: 133 ---YPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE---EL 186
Query: 301 LFT---INQSSTEVFGLFDRICLLSNGN 325
FT + E + DR+ ++S GN
Sbjct: 187 KFTSVFVTHDQEEAMEVADRVVVMSQGN 214
|
Length = 353 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 25/203 (12%)
Query: 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG-RLPH 162
+++ K+L G+ V+ + PG + I+GP+ SGK+TLLR I P
Sbjct: 2 SAIEVKNLVKKFHGQT-----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE 56
Query: 163 SARM-YGEVFVNGAKSEMPYGSY--------GFVERETTLIGSLTVREYLYYSALLQLPG 213
+ + G++ ++ A+S GFV + L TV E + + G
Sbjct: 57 AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENI-------IEG 109
Query: 214 FFCQRKNVVEDAIHAMSLSDYANKLIGGH--CYMKGLPCGERRRVRIARELVMRPHVLFI 271
+ E+A A + A + G Y + L G+++RV IAR L MRP V+
Sbjct: 110 PVIVKGEPKEEAT-ARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILF 168
Query: 272 DEPLYHLDSVSALLMMVTLKKLA 294
DEP LD ++ T+++LA
Sbjct: 169 DEPTSALDPELVGEVLNTIRQLA 191
|
Length = 250 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 1e-07
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 25/173 (14%)
Query: 119 RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE 178
RR + + VK + G I+G SGKSTL + +AG + ++ GE+ ++
Sbjct: 22 RRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GELLIDDHP-- 76
Query: 179 MPYGSYGFVERETTLI-----GSLTVREYLYYSALLQLPGFF-------CQRKNVVEDAI 226
+ +G Y + + +I SL R+ + S +L P + K ++E
Sbjct: 77 LHFGDYSYRSQRIRMIFQDPSTSLNPRQRI--SQILDFPLRLNTDLEPEQREKQIIETLR 134
Query: 227 HAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
L D+A+ Y L G+++R+ +AR L++RP V+ DE L LD
Sbjct: 135 QVGLLPDHASY------YPHMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 33/205 (16%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAK 176
KR +V+K + A G + I+G + SGKST LR I P + G + VNG +
Sbjct: 14 KRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA----GSIRVNGEE 69
Query: 177 SEMPYGSYG------------------FVERETTLIGSLTVREYLYYSALLQLPGFFCQR 218
+ G V + L +TV E + A + + G +
Sbjct: 70 IRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVI-EAPVHVLGV--SK 126
Query: 219 KNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278
+E A ++ A K ++ G G+++RV IAR L M P V+ DEP L
Sbjct: 127 AEAIERAEKYLAKVGIAEKADAYPAHLSG---GQQQRVAIARALAMEPEVMLFDEPTSAL 183
Query: 279 DS--VSALLMMVTLKKLASTGCTLL 301
D V +L ++ + LA G T++
Sbjct: 184 DPELVGEVLKVM--QDLAEEGRTMV 206
|
Length = 256 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 35/210 (16%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY---------GF 186
G + I+GP+ +GKSTL++ I RL G + ++G + G
Sbjct: 29 GAIYTIVGPSGAGKSTLIKLI-NRLIDPT--EGSILIDGVD----IKTIDVIDLRRKIGM 81
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV-VEDAIHAMSLS-DYANKLIGGHCY 244
V ++ L TV++ + Y +L+ KNV VE + + L+ +YA + +
Sbjct: 82 VFQQPHLFEG-TVKDNIEYGPMLK------GEKNVDVEYYLSIVGLNKEYATRDV----- 129
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLF- 302
K L GE +RV IAR L P VL +DEP LD S ++ + KL + T+++
Sbjct: 130 -KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWI 188
Query: 303 TINQSSTEVFGLFDRICLLSNGNTLFFGET 332
T N + G D L+ G + + +T
Sbjct: 189 THNMEQAKRIG--DYTAFLNKGILVEYAKT 216
|
Length = 241 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 4e-07
Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 22/192 (11%)
Query: 121 YSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSE 178
Y D+ + + LP G + + G +GK+TLL+ IAG L P GE+ +
Sbjct: 11 YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEK----GEILFERQSIK 66
Query: 179 MPYGSYG----FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY 234
+Y FV + + LT+RE Y F + + SL
Sbjct: 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDI------HFSPGAVGITELCRLFSLEHL 120
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
+ G L G++R+V + R + + + +DEPL LD +S L ++ +++
Sbjct: 121 IDYPCGL------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHR 174
Query: 295 STGCTLLFTINQ 306
+ G +L T +Q
Sbjct: 175 AKGGAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-07
Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 38/185 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG---------AKSEMPYGSYG 185
G ++G + SGKSTLL +AG S+ GEV + G A++++ G
Sbjct: 35 RGETIALIGESGSGKSTLLAILAGLDDGSS---GEVSLVGQPLHQMDEEARAKLRAKHVG 91
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
FV + LI +L E + ALL+ ++ + A +L + +G +
Sbjct: 92 FVFQSFMLIPTLNALENVELPALLR-------GESSRQSRNGAKALL----EQLGLGKRL 140
Query: 246 KGLPC----GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
LP GE++RV +AR RP VLF DEP +LD T K+A LL
Sbjct: 141 DHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDR-------QTGDKIAD----LL 189
Query: 302 FTINQ 306
F++N+
Sbjct: 190 FSLNR 194
|
Length = 228 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 5e-07
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 16/167 (9%)
Query: 138 MTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMP-------YGSYGFVE 188
+T I+GP+ GKSTLLRA+ + AR+ G V ++ P G V
Sbjct: 32 ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVF 91
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRK--NVVEDAIHAMSLSDYANKLIGGHCYMK 246
++ + +L G Q + VVE ++ +L D + H
Sbjct: 92 QQPNPFPKSIFDNVAFGPRML---GTTAQSRLDEVVEKSLRQAALWDEVKDNL--HKSGL 146
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
L G+++R+ IAR L + P V+ +DEP LD VS + + +++L
Sbjct: 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL 193
|
Length = 251 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 5e-07
Identities = 59/225 (26%), Positives = 101/225 (44%), Gaps = 28/225 (12%)
Query: 118 KRRYSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGA 175
KR+Y + + + G + +GP +GK+T L+ ++G L P S GEV V G
Sbjct: 28 KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS----GEVRVAG- 82
Query: 176 KSEMPYG-SYGFVER-------ETTLIGSLTVREYLYY-SALLQLPGFFCQRKNVVEDAI 226
+P+ F+ R +T L L V + Y +A+ LP + K +++
Sbjct: 83 --LVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPA--RFKKRLDELS 138
Query: 227 HAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286
+ L + + + + L G+R R IA L+ P +LF+DEP LD V+ +
Sbjct: 139 ELLDLEELLDTPV------RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192
Query: 287 MVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
LK+ G T+L T + ++ L R+ ++ G L+ G
Sbjct: 193 RNFLKEYNRERGTTVLLT-SHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 5e-07
Identities = 55/233 (23%), Positives = 91/233 (39%), Gaps = 50/233 (21%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+D + T + + +K N G + I+GP SGKS+LL A+ G L + G
Sbjct: 4 EDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS---G 60
Query: 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVV------ 222
V V GS +V +E + + T+RE N++
Sbjct: 61 SVSVP--------GSIAYVSQEPWIQ-NGTIRE------------------NILFGKPFD 93
Query: 223 ----EDAIHAMSLSDYANKLIGGHCYM---KG--LPCGERRRVRIARELVMRPHVLFIDE 273
E I A +L L G KG L G+++R+ +AR + + +D+
Sbjct: 94 EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDD 153
Query: 274 PLYHLDS-VSALLM-MVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
PL +D+ V + L L + +L T ++ D+I +L NG
Sbjct: 154 PLSAVDAHVGRHIFENCILGLLLNNKTRILVT---HQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 6e-07
Identities = 52/208 (25%), Positives = 98/208 (47%), Gaps = 19/208 (9%)
Query: 137 TMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGA----KSEMPYG---SYGFV 187
++T I+GP+ GKST+LR+I L SAR+ G++ ++ + P G V
Sbjct: 31 SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMV 90
Query: 188 ERETTLIGSLTVREYLYYSALLQLPGFF--CQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
++ ++++ Y A +L G + +VE ++ ++L D + +
Sbjct: 91 FQKPNPFPAMSI--YDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAME 148
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
L G+++R+ IAR + ++P V+ +DEP LD +S L + +++L ++ T N
Sbjct: 149 --LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHN 206
Query: 306 -QSSTEVFGLFDRICLLSNGNTLFFGET 332
Q + V D G+ + GET
Sbjct: 207 MQQAARV---SDYTAFFYMGDLVECGET 231
|
Length = 252 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 6e-07
Identities = 51/185 (27%), Positives = 71/185 (38%), Gaps = 47/185 (25%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
PG ++G +GKSTLLR +AG GE P G++ +E L
Sbjct: 31 FPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE---GEARP------APGIKVGYLPQEPQL 81
Query: 194 IGSLTVRE---------------YLYYSALLQLPGF----FCQRKNVVEDAIHAMSLSDY 234
TVRE + A P + +++ I A D
Sbjct: 82 DPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDL 141
Query: 235 ANKL-IGGHCYMKGLPC------------GERRRVRIARELVMRPHVLFIDEPLYHLD-- 279
++L I M L C GERRRV + R L+ +P +L +DEP HLD
Sbjct: 142 DSQLEIA----MDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE 197
Query: 280 SVSAL 284
SV+ L
Sbjct: 198 SVAWL 202
|
Length = 556 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 7e-07
Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 20/207 (9%)
Query: 138 MTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195
+T ++GP+ GKST LR+I L SAR GE+ G + + RE IG
Sbjct: 49 VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRRE---IG 105
Query: 196 SLTVREYLY----YSALLQLPGFFCQRKNVVEDAIHAMSLSDYA------NKLIGGHCYM 245
+ + + Y+ + + +R+ V D I SL+ A ++L H
Sbjct: 106 MVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRL---HSSA 162
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
L G+++R+ IAR L M+P VL +DEP LD +S + + +L ++ T N
Sbjct: 163 LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHN 222
Query: 306 QSSTEVFGLFDRICLLSNGNTLFFGET 332
+ + DR NG+ + + +T
Sbjct: 223 MQ--QALRVSDRTAFFLNGDLVEYDQT 247
|
Length = 268 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 8e-07
Identities = 57/204 (27%), Positives = 89/204 (43%), Gaps = 32/204 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNG-----AKSEMPYGSYG 185
PG + I+G + SGKSTL + I R Y G V V+G A G
Sbjct: 27 PGEVVGIVGRSGSGKSTLTKLIQ-------RFYVPENGRVLVDGHDLALADPAWLRRQVG 79
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V +E L + ++R+ + L PG +R V +A D+ ++L G+ +
Sbjct: 80 VVLQENVLF-NRSIRDNI----ALADPGMSMER---VIEAAKLAGAHDFISELPEGYDTI 131
Query: 246 -----KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
GL G+R+R+ IAR L+ P +L DE LD S +M + + G T+
Sbjct: 132 VGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI-CAGRTV 190
Query: 301 LFTINQSSTEVFGLFDRICLLSNG 324
+ ++ ST DRI ++ G
Sbjct: 191 IIIAHRLSTVKNA--DRIIVMEKG 212
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 9e-07
Identities = 60/244 (24%), Positives = 104/244 (42%), Gaps = 52/244 (21%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV-NGAKSEMPYG------------ 182
G + V+MG + SGKSTLLRA+ G P S G V V +G S
Sbjct: 50 GEICVLMGLSGSGKSTLLRAVNGLNPVSR---GSVLVKDGDGSVDVANCDAATLRRLRTH 106
Query: 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFF-CQRKNVVEDAIHAMSLSDYANKLIGG 241
V ++ L+ TV E + + L++ G +R+ V++ + + L+ +A++
Sbjct: 107 RVSMVFQQFALLPWRTVEENVAFG--LEMQGMPKAERRKRVDEQLELVGLAQWADR---- 160
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV-------SALLMMVTLKKLA 294
L G ++RV +AR +L +DEP LD + L + LKK
Sbjct: 161 --KPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKK-- 216
Query: 295 STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSD 354
T++F ++ E + +RI ++ G +QH G P I+ +P++
Sbjct: 217 ----TIVF-VSHDLDEALKIGNRIAIMEGGRI---------IQH----GTPEEIVLNPAN 258
Query: 355 HFLR 358
++
Sbjct: 259 DYVA 262
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 9e-07
Identities = 52/191 (27%), Positives = 72/191 (37%), Gaps = 59/191 (30%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
PG ++G +GKSTLLR +AG GE P G++ +E L
Sbjct: 29 FPGAKIGVLGLNGAGKSTLLRIMAGV---DKEFNGEARP------APGIKVGYLPQEPQL 79
Query: 194 IGSLTVRE-------------------YLYYS-------ALLQLPGFFCQRKNVVEDAIH 227
+ TVRE ++ ALL + +++ I
Sbjct: 80 DPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLA-------EQAELQEIID 132
Query: 228 AMSLSDYANKLIGGHCYMKGLPC------------GERRRVRIARELVMRPHVLFIDEPL 275
A D KL M L C GERRRV + R L+ +P +L +DEP
Sbjct: 133 AADAWDLDRKL---EIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPT 189
Query: 276 YHLD--SVSAL 284
HLD SV+ L
Sbjct: 190 NHLDAESVAWL 200
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 25/186 (13%)
Query: 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPY 181
+ +K+ N +T ++GP+ GKSTLLR++ L R+ G+V +G + Y
Sbjct: 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDG---QDIY 71
Query: 182 GSYGFVERETTLIG---------SLTVREYLYYSALLQLPGFFCQRK--NVVEDAIHAMS 230
V +G +++ + + Y +L G +++ +VE+++ +
Sbjct: 72 DKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG--PRLHGIKDKKELDEIVEESLKKAA 129
Query: 231 LSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL---LM 286
L D ++L H GL G+++R+ IAR L + P VL +DEP LD ++ +
Sbjct: 130 LWDEVKDRL---HDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEEL 186
Query: 287 MVTLKK 292
+ LKK
Sbjct: 187 IQELKK 192
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 58/218 (26%), Positives = 96/218 (44%), Gaps = 44/218 (20%)
Query: 97 VARKIAGASVVWKDLTVTIK---------GKRRYS-DK-VVKSSNGYAL---PGTMTVIM 142
VA + G S V K+ V + KR S D+ VVK+ + +L G + I+
Sbjct: 257 VAVFMEGVSEVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIV 316
Query: 143 GPAKSGKSTLLRAIAGRLPHSARMYGEVFV--------------NGAKSEMPYGSYGFVE 188
G + +GK+TL + IAG L ++ GEV V +G Y G +
Sbjct: 317 GTSGAGKTTLSKIIAGVLEPTS---GEVNVRVGDEWVDMTKPGPDGRGRAKRY--IGILH 371
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCY 244
+E L TV + L + L+LP + K A+ + + + A +++ Y
Sbjct: 372 QEYDLYPHRTVLDNLTEAIGLELPDELARMK-----AVITLKMVGFDEEKAEEILDK--Y 424
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
L GER RV +A+ L+ P ++ +DEP +D ++
Sbjct: 425 PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPIT 462
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 25/225 (11%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMY--GEVFVNGAKSEMPYGSYGFVERE-T 191
G+ T ++GP +GKSTLL + G LP R+ G VN + G V ++
Sbjct: 31 GSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGRE-VNAENEKWVRSKVGLVFQDPD 89
Query: 192 TLIGSLTVREYLYYSAL-LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250
+ S TV + + + + + L + + VE+A+ A+ + D+ +K H L
Sbjct: 90 DQVFSSTVWDDVAFGPVNMGLDK--DEVERRVEEALKAVRMWDFRDK-PPYH-----LSY 141
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310
G+++RV IA L M P V+ +DEP+ +LD +M L +L + G T++ +T
Sbjct: 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIV-----ATH 196
Query: 311 VFGLF----DRICLLSNGNTLFFG--ETLACLQHFSNAGFPCPIM 349
L D++ +L G L G L AG P++
Sbjct: 197 DVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAGLRLPLV 241
|
Length = 274 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 1e-06
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 22/210 (10%)
Query: 136 GTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
+T ++GP+ GKST LR + L + G V + G P + ++ +
Sbjct: 31 NEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGM 90
Query: 194 IGS------LTVREYLYYSALLQLPGFFCQRKNVVEDAI-----HAMSLSDYANKLIGGH 242
+ ++ E + Y L+L G + K V+++A+ A + + L H
Sbjct: 91 VFQQPNPFPFSIYENVIYG--LRLAG--VKDKAVLDEAVETSLKQAAIWDEVKDHL---H 143
Query: 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 302
L G+++RV IAR L ++P V+ +DEP LD +S+ + L +L +L
Sbjct: 144 ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILV 203
Query: 303 TINQSSTEVFGLFDRICLLSNGNTLFFGET 332
T + D+ GN + F +T
Sbjct: 204 THSMHQASRIS--DKTAFFLTGNLIEFADT 231
|
Length = 252 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 49/224 (21%), Positives = 100/224 (44%), Gaps = 19/224 (8%)
Query: 121 YSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA---GRLPHSARMYGEVFVNGAK 176
Y +K VK+ +T I+GP+ GK+TLLR+I +P R+ G+++ G
Sbjct: 13 YGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIP-GFRVEGKIYFKGQD 71
Query: 177 SEMPYGSYGFVERETTLIGS------LTVREYLYYSALLQLPGFFCQRK--NVVEDAIHA 228
P ++ ++ +++ + + + ++ G + K +VE+++
Sbjct: 72 IYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFG--PRIHGVKSKHKLDRIVEESLKK 129
Query: 229 MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 288
+L D + L G+++R+ IAR L + P V+ +DEP LD ++ +
Sbjct: 130 AALWDEVKSELNKPGT--RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEK 187
Query: 289 TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
L++L+ ++ T N + + D I + G + +G T
Sbjct: 188 LLEELSENYTIVIVTHNIG--QAIRIADYIAFMYRGELIEYGPT 229
|
Length = 250 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 37/222 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--------AK 176
V+K + G + ++G +GKSTL++ IAG +P + G + + G AK
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS---GTLEIGGNPCARLTPAK 82
Query: 177 SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYAN 236
+ G Y V +E L +L+V+E + L LP S+
Sbjct: 83 AHQ-LGIY-LVPQEPLLFPNLSVKENI----LFGLPK-------------RQASMQKMKQ 123
Query: 237 KLIGGHCYMK------GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290
L C + L +R+ V I R L+ +L +DEP L + +
Sbjct: 124 LLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRI 183
Query: 291 KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
++L + G ++F I+ E+ L DRI ++ +G G+T
Sbjct: 184 RELLAQGVGIVF-ISHKLPEIRQLADRISVMRDGTIALSGKT 224
|
Length = 510 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 2e-06
Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 41/161 (25%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---------SEMPY-GSY 184
G + I GP +GK++LLR +AG A GEV G ++ Y G
Sbjct: 26 AGELVQIEGPNGAGKTSLLRILAGLARPDA---GEVLWQGEPIRRQRDEYHQDLLYLGHQ 82
Query: 185 GFVERETTLIGSLTVREYL-YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC 243
++ E LT E L +Y L + +A+ + L+ + +
Sbjct: 83 PGIKTE------LTALENLRFYQRLHG-----PGDDEALWEALAQVGLAGFED------- 124
Query: 244 YMKGLPC-----GERRRVRIARELVMRPHVLFIDEPLYHLD 279
+P G++RRV +AR + R + +DEP +D
Sbjct: 125 ----VPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
|
Length = 204 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 29/225 (12%)
Query: 117 GKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176
KR KVV + G + ++GP +GK+T I G + + G++ ++
Sbjct: 15 KKR----KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS---GKILLDDED 67
Query: 177 -SEMPYGS-----YGFVERETTLIGSLTVREYLYYSALLQL---PGFFCQRKNVVEDAIH 227
+++P G++ +E ++ LTV + + A+L++ +RK ++ +
Sbjct: 68 ITKLPMHKRARLGIGYLPQEASIFRKLTVEDNI--MAVLEIREKDLKKAERKEELDALLE 125
Query: 228 AMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD--SVSALL 285
++ + L GERRRV IAR L P + +DEP +D +V +
Sbjct: 126 EFHITHLRDSKAYS------LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQ 179
Query: 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
++ K L G +L T + + E + DR ++S+G L G
Sbjct: 180 RII--KHLKDRGIGVLIT-DHNVRETLDICDRAYIISDGKVLAEG 221
|
Length = 243 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 27/187 (14%)
Query: 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKS-EMP 180
+V+ N T+T +MGP+ SGKSTLLR L AR+ GEV+++G +M
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76
Query: 181 YGSYGFVERETTL-------IGSLTVREYLYYSAL-LQLPGFFCQRKNV---VEDAIHAM 229
+ R + I +L++ E + AL L+L +K + V A+
Sbjct: 77 VIE---LRRRVQMVFQIPNPIPNLSIFENV---ALGLKLNRLVKSKKELQERVRWALEKA 130
Query: 230 SLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL---L 285
L D ++L + G G+++R+ IAR L +P VL DEP +LD +
Sbjct: 131 QLWDEVKDRLDAPAGKLSG---GQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIES 187
Query: 286 MMVTLKK 292
+ + LKK
Sbjct: 188 LFLELKK 194
|
Length = 250 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 24/230 (10%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+DL + G + + + + N A + ++GP +GKSTL R G L ++ G
Sbjct: 7 RDLCYSYSGSK----EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS---G 59
Query: 169 EVFVNGAK--SEMPYGSYGFV----ERETTLIGSLTVREYLYYSAL-LQLPGFFCQRKNV 221
V + G E FV + I S TV + + + + L L +
Sbjct: 60 SVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHR-- 117
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
V A+H + L + ++ + H L GE++RV IA + M P VL +DEP LD
Sbjct: 118 VSSALHMLGLEELRDR-VPHH-----LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQ 171
Query: 282 SALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
++ L L T G T++F+ +Q V + D I ++ G + +G
Sbjct: 172 GVKELIDFLNDLPETYGMTVIFSTHQLDL-VPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 49/201 (24%)
Query: 121 YSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR---LPHSARMYGEVFVNGAK 176
Y DK +K N +T ++GP+ GKSTLLR + R L AR+ GEV ++G
Sbjct: 17 YGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCL-NRMNDLIPGARVEGEVLLDG-- 73
Query: 177 SEMPYGSYGFVERETTLIG---------SLTVREYLYYSALLQLPGFFCQRKN-----VV 222
+ Y V +G +++ + + Y L K+ +V
Sbjct: 74 -KNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLH------GIKDKELDEIV 126
Query: 223 EDAIHAMSL--------SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
E ++ +L A L GG +++R+ IAR L ++P VL +DEP
Sbjct: 127 ESSLKKAALWDEVKDRLHKSALGLSGG----------QQQRLCIARALAVKPEVLLMDEP 176
Query: 275 LYHLDSVSAL---LMMVTLKK 292
LD +S L ++ LKK
Sbjct: 177 TSALDPISTLKIEELITELKK 197
|
Length = 253 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 30/226 (13%)
Query: 119 RRYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177
+R+ V+ N G ++GP+ SGKST+LR + P G++ V G +
Sbjct: 8 KRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDE---GQIQVEGEQL 64
Query: 178 -EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF---CQRKNVVEDAIH------ 227
MP + V + + +R + + Q F NV E +
Sbjct: 65 YHMPGRNGPLVPADEKHLRQ--MRNKI--GMVFQSFNLFPHKTVLDNVTEAPVLVLGMAR 120
Query: 228 ------AMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
AM L D L G+++RV IAR L MRP V+ DE LD
Sbjct: 121 AEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE 180
Query: 282 SALLMMVTLKKLAS-TGCTLLFTINQSSTEVFG--LFDRICLLSNG 324
++ +++LAS T+L ++ F DR+C G
Sbjct: 181 LVGEVLNVIRRLASEHDLTMLLVTHEMG---FAREFADRVCFFDKG 223
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 72/278 (25%), Positives = 119/278 (42%), Gaps = 55/278 (19%)
Query: 89 PPLPEGAAVARKIAGASVVWKDLTVTIKGK----RRYSD--KVVKSSNGYALPGTMTVIM 142
PPLPE A V ++ +DL V K RR D + V + G ++
Sbjct: 267 PPLPEDAPVLLEV-------EDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLV 319
Query: 143 GPAKSGKSTLLRAIAGRLPHSARMY--GEVFVNGAKSEM-------------PYGSYGFV 187
G + SGKSTL A+ +P + G+ ++ EM PYGS
Sbjct: 320 GESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGS--LS 377
Query: 188 ERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSL-----SDYANKLIGGH 242
R T +G + + E L + + +R V +A+ + L + Y ++ GG
Sbjct: 378 PRMT--VGQI-IEEGL---RVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGG- 430
Query: 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKL-ASTGCTL 300
+R+R+ IAR L+++P ++ +DEP LD SV A ++ + L+ L G +
Sbjct: 431 ---------QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDL-LRDLQQKHGLSY 480
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
LF I+ V L R+ ++ +G + G T A +
Sbjct: 481 LF-ISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN 517
|
Length = 534 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 48/211 (22%), Positives = 93/211 (44%), Gaps = 19/211 (9%)
Query: 126 VKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK------ 176
VK+ +G L PG + G +GKSTL++ ++G PH GE++ +G+
Sbjct: 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGT-WDGEIYWSGSPLKASNI 72
Query: 177 SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVV---EDAIHAMSLSD 233
+ + +E TL+ L+V E ++ + LPG + ++ + + L
Sbjct: 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDA 132
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
G G+++ V IA+ L + +L +DEP L +++ ++ L
Sbjct: 133 DNVTRPVGD-----YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL 187
Query: 294 ASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
+ G ++ I+ EV + D IC++ +G
Sbjct: 188 KAHGVACVY-ISHKLNEVKAVCDTICVIRDG 217
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 4e-06
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 30/181 (16%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG------AKSEMPYGSYGFVE 188
PG M + G + +GKSTLL+ I G SA G+++ +G E+P F+
Sbjct: 27 PGEMAFLTGHSGAGKSTLLKLICGIERPSA---GKIWFSGHDITRLKNREVP-----FLR 78
Query: 189 RETTLI---GSLTVREYLYYSALLQL-----PGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
R+ +I L + +Y + + L G +R+ V A+ + L D A
Sbjct: 79 RQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR--VSAALDKVGLLDKAKN--- 133
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
+ L GE++RV IAR +V +P VL DEP +LD + ++ ++ G T+
Sbjct: 134 ---FPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTV 190
Query: 301 L 301
L
Sbjct: 191 L 191
|
Length = 222 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 50/257 (19%), Positives = 88/257 (34%), Gaps = 39/257 (15%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTV---------------IMGPAKS 147
S V K + + ++ + G I+G +
Sbjct: 5 KVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGA 64
Query: 148 GKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSA 207
GKSTLL+ IAG ++ G+V V G + + GF LT RE +Y
Sbjct: 65 GKSTLLKLIAGIYKPTS---GKVKVTGKVAPLIELGAGF-------DPELTGRENIYLRG 114
Query: 208 LLQLPGFFCQRKNVVEDAIHAMS-LSDYANKLIGGHCYMKGLPCGERRRVRIARELVM-- 264
L + G + + D I + L D+ ++ + Y G+ R+A +
Sbjct: 115 L--ILGLTRKEIDEKVDEIIEFAELGDFIDQPVK--TYSSGM------YARLAFSVATHV 164
Query: 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
P +L +DE L D+ + L +L T++ ++ + DR L +G
Sbjct: 165 EPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVL-VSHDLGAIKQYCDRAIWLEHG 223
Query: 325 NTLFFGETLACLQHFSN 341
G + +
Sbjct: 224 QIRMEGSPEEVIPAYEE 240
|
Length = 249 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 5e-06
Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG---------AKSEMPYGSY 184
G M I+G + SGKSTLL + G P S G+V NG AK+E+
Sbjct: 34 EGEMMAIVGSSGSGKSTLLHLLGGLDTPTS----GDVIFNGQPMSKLSSAAKAELRNQKL 89
Query: 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY 244
GF+ + L+ T E + A+ L G + + A+ ++ ++ +
Sbjct: 90 GFIYQFHHLLPDFTALENV---AMPLLIGK-KKPAEINSRALEMLAAVGLEHR---ANHR 142
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
L GER+RV IAR LV P ++ DEP +LD+ +A
Sbjct: 143 PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 6e-06
Identities = 54/193 (27%), Positives = 80/193 (41%), Gaps = 24/193 (12%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVR 200
++G +GKSTLLR +AG P + G V V G S + GF LT R
Sbjct: 53 LIGRNGAGKSTLLRLLAGIYPPDS---GTVTVRGRVSSLLGLGGGFN-------PELTGR 102
Query: 201 EYLYYSALLQLPGFFCQRKNV--VEDAIHAMS-LSDYANKLIGGHCYMKGLPCGERRRVR 257
E +Y + L G RK + D I S L D+ + +K G + R+
Sbjct: 103 ENIYLNGRLL--G--LSRKEIDEKIDEIIEFSELGDFIDL------PVKTYSSGMKARLA 152
Query: 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317
A + P +L IDE L D+ L++L G T++ ++ + + L DR
Sbjct: 153 FAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVIL-VSHDPSSIKRLCDR 211
Query: 318 ICLLSNGNTLFFG 330
+L G F G
Sbjct: 212 ALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 6e-06
Identities = 48/211 (22%), Positives = 84/211 (39%), Gaps = 39/211 (18%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP------YGSYGFVERETTL 193
++GP +GKSTLL +AG LP S G + G + +Y +++T
Sbjct: 27 LVGPNGAGKSTLLARMAGLLPGS----GSIQFAGQPLEAWSAAELARHRAY-LSQQQTPP 81
Query: 194 IGSLTVREYL--YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251
++ V +YL + + + + + A+ L D + + L G
Sbjct: 82 F-AMPVFQYLTLHQPDKTRT----EAVASALNEVAEALGLDDKLGRSVN------QLSGG 130
Query: 252 ERRRVRIAREL-----VMRPH--VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT- 303
E +RVR+A + + P +L +DEP+ LD + L +L G ++ +
Sbjct: 131 EWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSS 190
Query: 304 --INQSSTEVFGLFDRICLLSNGNTLFFGET 332
+N + DR+ LL G L G
Sbjct: 191 HDLNHTLRHA----DRVWLLKQGKLLASGRR 217
|
Length = 248 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 6e-06
Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 17/237 (7%)
Query: 120 RYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKS 177
RY D+ V+K N +T ++G GKSTL ++G L P G V G
Sbjct: 10 RYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQK----GAVLWQG--K 63
Query: 178 EMPYGSYGFVE-RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYAN 236
+ Y G + R+ + ++Y+ + F + V E I + +
Sbjct: 64 PLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEI-TRRVDEALT 122
Query: 237 KLIGGHCYMKGLPC---GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
+ H + + C G+++RV IA LV++ L +DEP LD M+ ++++
Sbjct: 123 LVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI 182
Query: 294 ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF---GETLACLQHFSNAGFPCP 347
+ G ++ + + ++ + D + +L G L GE AC + AG P
Sbjct: 183 VAQGNHVIIS-SHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 7e-06
Identities = 53/202 (26%), Positives = 83/202 (41%), Gaps = 37/202 (18%)
Query: 147 SGKSTLLRAIAGRLPH--SARMYGEVFVNG------AKSEMP--YG---SYGFVERETTL 193
SGKS L +AI G LP + + GE+ +G ++ E+ G + F + T+L
Sbjct: 42 SGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSL 101
Query: 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS----------LSDYANKLIGGHC 243
+T+ + + L G +K E AI + L Y ++L GG
Sbjct: 102 NPVMTIGDQIAEVLRLHGKGL--SKKEAKERAIELLELVGIPDPERRLKSYPHELSGGM- 158
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLF 302
R+RV IA L + P +L DEP LD ++ LK+L G L+
Sbjct: 159 ---------RQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALIL 209
Query: 303 TINQSSTEVFGLFDRICLLSNG 324
I V + DR+ ++ G
Sbjct: 210 -ITHDLGVVAEIADRVAVMYAG 230
|
Length = 316 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 7e-06
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 18/198 (9%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS--------YGF 186
G + ++G +GKSTL++ + G + GE+ V+G E+ S G
Sbjct: 29 KGEIHALLGENGAGKSTLMKILFGLYQPDS---GEIRVDGK--EVRIKSPRDAIRLGIGM 83
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246
V + L+ +LTV E + +L L + + LS+ + +
Sbjct: 84 VHQHFMLVPTLTVAENI----ILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA 139
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 306
L GE++RV I + L +L +DEP L A + L++LA+ G T++F I
Sbjct: 140 DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIF-ITH 198
Query: 307 SSTEVFGLFDRICLLSNG 324
EV + DR+ +L G
Sbjct: 199 KLKEVMAIADRVTVLRRG 216
|
Length = 501 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 7e-06
Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 41/177 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-----RMYGEVFVN------GAKSEMPYGS 183
PG + I+G + SGK+TLL+ I+GRL A RM + + +
Sbjct: 31 PGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTE 90
Query: 184 YGFVE-------RETTLIGSLTVREYL------YYSALLQLPGFFCQRKNVVEDAIHAMS 230
+GFV R G + E L +Y + + + VE I
Sbjct: 91 WGFVHQNPRDGLRMQVSAGG-NIGERLMAIGARHYGNIRAEAQDWLEE---VE--IDLDR 144
Query: 231 LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLM 286
+ D GG ++R++IAR LV RP ++F+DEP LD SV A L+
Sbjct: 145 IDDLPRTFSGGM----------QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL 191
|
Length = 258 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 7e-06
Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 44/211 (20%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
G + V ++ + I G + VI+GP+ SGKSTLLR I
Sbjct: 12 GPTQVLHNIDLNID------------------QGEVVVIIGPSGSGKSTLLRCINKLEEI 53
Query: 163 SARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVV 222
++ G++ V+G K P ER + +++ + L L +NV+
Sbjct: 54 TS---GDLIVDGLKVNDPKVD----ERLIRQEAGMVFQQFYLFPHLTAL-------ENVM 99
Query: 223 EDAIHAMSLS-----DYANKLIG-------GHCYMKGLPCGERRRVRIARELVMRPHVLF 270
+ S A +L+ H Y L G+++RV IAR L ++P ++
Sbjct: 100 FGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLML 159
Query: 271 IDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
DEP LD ++ ++ LA G T++
Sbjct: 160 FDEPTSALDPELRHEVLKVMQDLAEEGMTMV 190
|
Length = 240 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 7e-06
Identities = 51/177 (28%), Positives = 75/177 (42%), Gaps = 41/177 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS----------- 183
PG + I+G + SGKSTLL +AGRL + +GA+ E+ S
Sbjct: 28 PGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTE 87
Query: 184 YGFVE-------RETTLIGSLTVREYL------YYSALLQLPGFFCQRKNVVEDAIHAMS 230
+GFV R G+ + E L +Y + + + VE I
Sbjct: 88 WGFVHQNPRDGLRMRVSAGA-NIGERLMAIGARHYGNIRATAQDWLEE---VE--IDPTR 141
Query: 231 LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLM 286
+ D GG ++R++IAR LV RP ++F+DEP LD SV A L+
Sbjct: 142 IDDLPRAFSGGM----------QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL 188
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 32/168 (19%)
Query: 130 NGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-MP---YG 182
N L + ++GP +GK+T+ + G + G + + G E +P
Sbjct: 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTG---GTILLRGQHIEGLPGHQIA 78
Query: 183 SYGFVE--------RETTLIGSLTVREYLY-----YSALLQLPGFFCQRKNVVEDAIH-- 227
G V RE T+I +L V ++ +S LL+ P F ++ A
Sbjct: 79 RMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWL 138
Query: 228 -AMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
+ L ++AN+ G Y G++RR+ IAR +V +P +L +DEP
Sbjct: 139 ERVGLLEHANRQAGNLAY------GQQRRLEIARCMVTQPEILMLDEP 180
|
Length = 255 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 8e-06
Identities = 55/222 (24%), Positives = 93/222 (41%), Gaps = 53/222 (23%)
Query: 110 DLTVTIKGKRRYSDKVVKSSNGYAL---------PGTMTVIMGPAKSGKSTLLRAIAGRL 160
+ VTI+ + D + S +G L G ++GP+ +GK++LL A+ G L
Sbjct: 345 NDPVTIEAE----DLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400
Query: 161 PHSARMYGEVFVNGAK-SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ-- 217
P+ G + +NG + E+ S+ R++L S + Q P
Sbjct: 401 PYQ----GSLKINGIELRELDPESW---------------RKHL--SWVGQNPQLPHGTL 439
Query: 218 RKNV-----------VEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERRRVRIARE 261
R NV ++ A+ +S++ L G GL G+ +R+ +AR
Sbjct: 440 RDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARA 499
Query: 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
L+ +L +DEP LD+ S L+M L + TL+ T
Sbjct: 500 LLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVT 541
|
Length = 588 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 8e-06
Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 49/190 (25%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+ L+V+ G K + + Y PG + VI+GP +GK+T++ I G+ G
Sbjct: 6 EGLSVSFDGF-----KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDE---G 57
Query: 169 EVFVNGAK-SEMPYGSYGFVERETTLIG------------SLTVREYLYYSALLQLPG-- 213
V G + +P E + G +LTV E L L LP
Sbjct: 58 SVLFGGTDLTGLP-------EHQIARAGIGRKFQKPTVFENLTVFENL----ELALPRDK 106
Query: 214 -----FFCQRKNVVEDAIHAM----SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264
F + +D I + L+D A++L G L G+++ + I L+
Sbjct: 107 SVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG------LLSHGQKQWLEIGMLLMQ 160
Query: 265 RPHVLFIDEP 274
P +L +DEP
Sbjct: 161 DPKLLLLDEP 170
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 8e-06
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 26/182 (14%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAI-AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
G + GP+ +GKSTLL+++ A LP S R+ V GA ++ S RE
Sbjct: 33 AGECVALSGPSGAGKSTLLKSLYANYLPDSGRIL--VRHEGAWVDLAQAS----PREVLE 86
Query: 194 IGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGG----------- 241
+ T+ Y S L+ +P VV + + + A +
Sbjct: 87 VRRKTIG---YVSQFLRVIPRVSA--LEVVAEPLLERGVPREAARARARELLARLNIPER 141
Query: 242 --HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
H GE++RV IAR + +L +DEP LD+ + +++ + + + G
Sbjct: 142 LWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAA 201
Query: 300 LL 301
L+
Sbjct: 202 LI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 9e-06
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 39/162 (24%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK--SEMPYGSYGFVERETT 192
PG + V++GP +GK+TL+ I G+ GEV +G +++P E
Sbjct: 30 PGELRVLIGPNGAGKTTLMDVITGKTRPQE---GEVLFDGDTDLTKLP-------EHRIA 79
Query: 193 LIG------------SLTVREYLYYSALLQLPGFF---CQR-----KNVVEDAIHAMSLS 232
G +LTVRE L AL + F R + +++ + + L
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLEL-ALNRDKSVFASLFARLRAEERRRIDELLATIGLG 138
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
D ++L L G+++ + I L P +L +DEP
Sbjct: 139 DERDRLAA------LLSHGQKQWLEIGMLLAQDPKLLLLDEP 174
|
Length = 249 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 9e-06
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307
L GER+ V IAR L +L +DEP L + +++L + G ++F I+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIF-ISHR 141
Query: 308 STEVFGLFDRICLLSNG 324
EVF + DR+ +L +G
Sbjct: 142 LDEVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
KDL V+++ K ++K N G + IMGP SGKSTL + IAG P G
Sbjct: 4 KDLHVSVEDKE-----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSG 57
Query: 169 EVFVNG 174
+ G
Sbjct: 58 TILFKG 63
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 52/215 (24%), Positives = 83/215 (38%), Gaps = 54/215 (25%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
PG ++G + GKST++ + R Y GE+ ++G ++ G
Sbjct: 28 PGKTVALVGSSGCGKSTVVSLLE-------RFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA----------MSLSDYA 235
V +E L T+ E + Y E+ A MSL D
Sbjct: 81 LVSQEPVLF-DGTIAENIRYGK----------PDATDEEVEEAAKKANIHDFIMSLPDGY 129
Query: 236 NKLIGGH-CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
+ L+G + G G+++R+ IAR L+ P +L +DE LD+ S L+ L +
Sbjct: 130 DTLVGERGSQLSG---GQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM 186
Query: 295 STGCTL-----LFTINQSSTEVFGLFDRICLLSNG 324
T+ L TI + D I +L NG
Sbjct: 187 KGRTTIVIAHRLSTIRNA--------DLIAVLQNG 213
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 25/158 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----VNGAKSEMPYGSYGFVER 189
G I GP+ GKSTLL+ +A + ++ G + V+ K E + +
Sbjct: 28 AGEFIAITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDVSTLKPEAYRQQVSYCAQ 84
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED----AIHAMSLSDYANKLIGGHCYM 245
L G TV + L + ++ R ++ A+ L+ +L G
Sbjct: 85 TPALFGD-TVEDNLIFPWQIRNRRP--DRAAALDLLARFALPDSILTKNITELSG----- 136
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
GE++R+ + R L P +L +DE LD +
Sbjct: 137 -----GEKQRIALIRNLQFMPKILLLDEITSALDESNK 169
|
Length = 223 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 1e-05
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLD--SVSAL 284
GE+ R+ +A+ L+ P++L +DEP HLD S+ AL
Sbjct: 74 GEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEAL 109
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 63/258 (24%), Positives = 105/258 (40%), Gaps = 44/258 (17%)
Query: 86 LPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPA 145
L SPP + A + A V ++++T G+ R + S + PG ++G +
Sbjct: 311 LDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDR---PALDSISLVIEPGETVALVGRS 367
Query: 146 KSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY---------GFVERETTLIGS 196
SGKSTL+ I + G++ ++G Y V ++ L
Sbjct: 368 GSGKSTLVNLIPRFYEPDS---GQILLDG----HDLADYTLASLRRQVALVSQDVVLFND 420
Query: 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG-----LPCG 251
T+ + Y Q + +E A+ A D+ +KL G G L G
Sbjct: 421 -TIANNIAYGRTEQAD------RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473
Query: 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL-----LFTINQ 306
+R+R+ IAR L+ +L +DE LD+ S L+ L++L TL L TI +
Sbjct: 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEK 533
Query: 307 SSTEVFGLFDRICLLSNG 324
+ DRI ++ +G
Sbjct: 534 A--------DRIVVMDDG 543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 2e-05
Identities = 64/225 (28%), Positives = 97/225 (43%), Gaps = 34/225 (15%)
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
Y V+K+ + G + + G SGKS+LL I G L S G++ +G S P
Sbjct: 437 YVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSE---GKIKHSGRISFSP 493
Query: 181 YGSY---GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANK 237
S+ G + ++ + G L+ EY Y S + CQ + ED ++ + K
Sbjct: 494 QTSWIMPGTI-KDNIIFG-LSYDEYRYTSVIKA-----CQLE---ED------IALFPEK 537
Query: 238 ----LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL-LMMVTLKK 292
L G + G G+R R+ +AR + + +D P HLD V+ + L K
Sbjct: 538 DKTVLGEGGITLSG---GQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCK 594
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337
L S +L T S E D+I LL G F+G T + LQ
Sbjct: 595 LMSNKTRILVT---SKLEHLKKADKILLLHEGVCYFYG-TFSELQ 635
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 33/171 (19%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHS----ARMYGEVFVNGAKSEMPYGS------ 183
P ++T +GP+ GKST+LR + R+ H AR+ GEV ++G E YG
Sbjct: 28 EPRSVTAFIGPSGCGKSTVLRTL-NRM-HEVIPGARVEGEVLLDG---EDLYGPGVDPVA 82
Query: 184 ----YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK--NVVEDAIHAMSL----SD 233
G V + ++++R+ + A L+L G ++ +VE ++ +L D
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNV--VAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD 140
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
+K GG GL G+++R+ IAR + + P VL +DEP LD +S L
Sbjct: 141 RLDK-PGG-----GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTL 185
|
Length = 258 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 78/277 (28%), Positives = 116/277 (41%), Gaps = 77/277 (27%)
Query: 81 LNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKR-RY---SDKVVKSSNGYALPG 136
LNS P+ P G A ++ GA +T + R RY S +V+ + N PG
Sbjct: 435 LNS---PTEPRSAGLAALPELRGA--------ITFENIRFRYAPDSPEVLSNLNLDIKPG 483
Query: 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGA----------KSEMPYG 182
I+GP+ SGKSTL + + R+Y G+V V+G + +M
Sbjct: 484 EFIGIVGPSGSGKSTLTKLLQ-------RLYTPQHGQVLVDGVDLAIADPAWLRRQM--- 533
Query: 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH 242
G V +E L S ++R+ + C E IHA KL G H
Sbjct: 534 --GVVLQENVLF-SRSIRDNIA----------LCNPGAPFEHVIHAA-------KLAGAH 573
Query: 243 CYMKGLP---------------CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 287
++ LP G+R+R+ IAR LV P +L DE LD S L+M
Sbjct: 574 DFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIM 633
Query: 288 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
++++ G T++ ++ ST V DRI +L G
Sbjct: 634 RNMREI-CRGRTVIIIAHRLST-VRAC-DRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 57/228 (25%), Positives = 82/228 (35%), Gaps = 58/228 (25%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY- 167
++LTV V+ + PG + I+G + SGKSTL A+ G LP R+
Sbjct: 9 ENLTVEFATDGGRVP-AVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITS 67
Query: 168 GEVFVNGA------KSEM--------------PYGSY------GFVERETTLIGSLTVRE 201
GEV ++G + EM P S G RE + R
Sbjct: 68 GEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRA 127
Query: 202 YLYYSAL-----LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256
A+ + LP Y ++L GG R+RV
Sbjct: 128 EARKRAVELLEQVGLP--------------DPERRDRYPHQLSGG----------MRQRV 163
Query: 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFT 303
IA L ++P +L DEP LD + ++ LK L G +LF
Sbjct: 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFI 211
|
Length = 539 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 44/210 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNG---AKSEMPY--GSYG 185
G I+GP+ SGKST+LR + R Y G + ++G + + + G
Sbjct: 26 AGKKVAIVGPSGSGKSTILRLLF-------RFYDVSSGSILIDGQDIREVTLDSLRRAIG 78
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV----VEDA-----IHA--MSLSDY 234
V ++T L T+ + Y R + V +A IH M D
Sbjct: 79 VVPQDTVLFND-TIGYNIRYG-----------RPDATDEEVIEAAKAAQIHDKIMRFPDG 126
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
+ ++G L GE++RV IAR ++ P +L +DE LD+ + + L+ +
Sbjct: 127 YDTIVGERGLK--LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDV- 183
Query: 295 STGCTLLFTINQSSTEVFGLFDRICLLSNG 324
S G T + ++ ST V D+I +L +G
Sbjct: 184 SKGRTTIVIAHRLSTIVNA--DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 44/197 (22%), Positives = 74/197 (37%), Gaps = 46/197 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
G ++G + SGKSTLL+ + G L P GE+ ++G P L
Sbjct: 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQ----GEITLDGV----PVSDLEKALSS--L 76
Query: 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253
I L R YL+ + L G + GER
Sbjct: 77 ISVLNQRPYLFDTTLRNNLG--------------------------------RRFSGGER 104
Query: 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 313
+R+ +AR L+ ++ +DEP LD ++ ++ + ++ + T + + E
Sbjct: 105 QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH-- 162
Query: 314 LFDRICLLSNGNTLFFG 330
D+I L NG + G
Sbjct: 163 -MDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 34/205 (16%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PY---GSYGFVER 189
PG I+G SGKSTLL+ + G + G V ++G P + G+V +
Sbjct: 490 PGEKVAIIGRIGSGKSTLLKLLLGLYQPTE---GSVLLDGVDIRQIDPADLRRNIGYVPQ 546
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED-----AIHAMSLSDYANKLIGGHCY 244
+ L T+R+ + A +D A ++++ + G
Sbjct: 547 DPRLF-YGTLRDNIALGAPY------------ADDEEILRAAELAGVTEFVRRHPDGLDM 593
Query: 245 M-----KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
+ L G+R+ V +AR L+ P +L +DEP +D+ S LK+ + G T
Sbjct: 594 QIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKT 652
Query: 300 LLFTINQSSTEVFGLFDRICLLSNG 324
L+ +++S + L DRI ++ NG
Sbjct: 653 LVLVTHRTS--LLDLVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 25/157 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G +T ++G SGKSTLL+ + GR H GE+ ++ E + S F + L
Sbjct: 36 AGKVTGLIGHNGSGKSTLLK-MLGR--HQPPSEGEILLDAQPLE-SWSSKAFARKVAYLP 91
Query: 195 GSL------TVRE------YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH 242
L TVRE Y ++ AL + F + VE+AI + L A++L+
Sbjct: 92 QQLPAAEGMTVRELVAIGRYPWHGALGR---FGAADREKVEEAISLVGLKPLAHRLV--- 145
Query: 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
L GER+R IA + L +DEP LD
Sbjct: 146 ---DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
|
Length = 265 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 3e-05
Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 30/209 (14%)
Query: 141 IMGPAKSGKSTLLRAIAGRL----PHSARMYGEVFVNGA----------KSEMPYGSYGF 186
IMGP+ SGKSTLL+ + RL ++ G+V G + E+ G
Sbjct: 41 IMGPSGSGKSTLLKVL-NRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEV-----GM 94
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQR--KNVVEDAIHAMSL-SDYANKLIGGHC 243
V ++ L++ + + Y L+ G +R K +VE+ + + L + ++L
Sbjct: 95 VFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPAS 152
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
+ G G+++R+ IAR L ++P VL +DEP +D V++ + + +L + ++
Sbjct: 153 QLSG---GQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVI-- 207
Query: 304 INQSSTEVFGLFDRICLLSNGNTLFFGET 332
++ + +V + D + L NG + +G +
Sbjct: 208 VSHNPQQVARVADYVAFLYNGELVEWGSS 236
|
Length = 257 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 31/156 (19%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP---------YGSYG 185
G + ++G + GKSTLLR +AG +A G++ ++G S +P + SY
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAGFEQPTA---GQIMLDGVDLSHVPPYQRPINMMFQSYA 101
Query: 186 FVERETTLIGSLTVREYLYYSALLQ--LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC 243
L +TV + + + L Q LP + + V + + + + ++A + H
Sbjct: 102 -------LFPHMTVEQNIAF-GLKQDKLPK--AEIASRVNEMLGLVHMQEFAKR--KPH- 148
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
L G+R+RV +AR L RP +L +DEP+ LD
Sbjct: 149 ---QLSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
|
Length = 377 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 223 EDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
A+ A+ L+D AN+ + L G+++RV +AR L+ RP +L +DEPL LD+++
Sbjct: 115 LQALAAVGLADRANE------WPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168
Query: 283 ALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
+ M ++ L G T+L + S E + DR+ L+ G
Sbjct: 169 RIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGK 211
|
Length = 257 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 5e-05
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 30/165 (18%)
Query: 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL---- 193
+T I+GP+ GKST L+ L + EV V G + + + ER L
Sbjct: 35 VTAIIGPSGCGKSTFLKC----LNRMNELESEVRVEG---RVEFFNQNIYERRVNLNRLR 87
Query: 194 -----------IGSLTVREYLYYSALLQLPGFF--CQRKNVVEDAIHAMSLSD-YANKLI 239
+ ++V + + Y +++ G+ + ++VE A+ L D +K+
Sbjct: 88 RQVSMVHPKPNLFPMSVYDNVAYG--VKIVGWRPKLEIDDIVESALKDADLWDEIKHKI- 144
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
H L G+++R+ IAR L ++P VL +DEP + LD ++++
Sbjct: 145 --HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASM 187
|
Length = 261 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 62/226 (27%), Positives = 96/226 (42%), Gaps = 44/226 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL-----PHSARMYGEVFVNGA-------------K 176
PG +T ++G +GKSTLL+A+AG L P AR+ G+V +NG +
Sbjct: 26 PGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLR 85
Query: 177 SEMPYGS---YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD 233
+ +P + + F RE L+G Y A + G R + A A++L+
Sbjct: 86 AVLPQAAQPAFAFSAREIVLLGR-------YPHA--RRAGALTHRDGEI--AWQALALAG 134
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIAREL---------VMRPHVLFIDEPLYHLDSVSAL 284
A L+G + L GE RV+ AR L P L +DEP LD
Sbjct: 135 -ATALVGRD--VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQH 191
Query: 285 LMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
++ T+++LA + I DRI +L++G + G
Sbjct: 192 RLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHG 237
|
Length = 272 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 6e-05
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310
GE++R+ AR L+ +P +F+DE LD S + LK+L G T++ ++ S
Sbjct: 95 GEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSLW 151
Query: 311 VFGLFDRICLLSN 323
F DR+ L
Sbjct: 152 KF--HDRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 7e-05
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 20/174 (11%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--AKSEMPYGSYGFVERETT 192
G ++ G +GK+TLLR +AG L H G++ ++G A ++
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAG-LLHVES--GQIQIDGKTATRGDRSRFMAYLGHLPG 92
Query: 193 LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252
L L+ E L++ L L G + K + A+ + L+ Y + L+ + L G+
Sbjct: 93 LKADLSTLENLHF--LCGLHG--RRAKQMPGSALAIVGLAGYEDTLV------RQLSAGQ 142
Query: 253 RRRVRIARELVMRPHVLF-IDEPLYHLD--SVSALLMMVTLKKLASTGCTLLFT 303
++R+ +AR L + P L+ +DEP +LD ++ + M++ L G L+ T
Sbjct: 143 KKRLALAR-LWLSPAPLWLLDEPYANLDLEGITLVNRMIS-AHLRGGGAALVTT 194
|
Length = 214 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 7e-05
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 17/204 (8%)
Query: 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-----MPYGSYGFVERETT 192
+T ++G + GKST LR A++ G V + G + + G V ++
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 193 LIGSLTVREYLYYSALLQLPGFFCQRKN---VVEDAIHAMSL-SDYANKLIGGHCYMKGL 248
+ ++ E + Y+ +L G + +V D + + L + +KL + G
Sbjct: 90 VFVK-SIYENISYAP--KLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSG- 145
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308
G+++R+ IAR L ++P +L +DEP LD +S+ ++ LK+L+ ++ T N
Sbjct: 146 --GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQ 203
Query: 309 TEVFGLFDRICLLSNGNTLFFGET 332
+ D G + FGE+
Sbjct: 204 GKRVA--DYTAFFHLGELIEFGES 225
|
Length = 246 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 25/181 (13%)
Query: 136 GTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
G +T ++GP+ GKST+LR++ L + G V +G P V R
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR--- 95
Query: 194 IGSL---------TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYA-NKLIGGHC 243
IG + ++ E + + A ++ G+ +VE ++ ++ D +KL
Sbjct: 96 IGMVFQQPNPFPKSIYENIAFGA--RINGYTGDMDELVERSLRKAAVWDECKDKLNESGY 153
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
+ G G+++R+ IAR + + P V+ +DEP LD +S L + T+ +L FT
Sbjct: 154 SLSG---GQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKN-----FT 205
Query: 304 I 304
I
Sbjct: 206 I 206
|
Length = 269 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 7e-05
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 11/183 (6%)
Query: 138 MTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195
+T I+GP+ GKST ++ + L ++ G V G P + + R+ ++
Sbjct: 35 VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVF 94
Query: 196 S------LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
+++ E + Y + +VE A+ +L + GL
Sbjct: 95 QRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSAL--GLS 152
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN-QSS 308
G+++R+ IAR L ++P VL +DEP LD ++ + + + L S + T N Q +
Sbjct: 153 GGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQA 212
Query: 309 TEV 311
T V
Sbjct: 213 TRV 215
|
Length = 259 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 7e-05
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 34/168 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNG----AKSEMPYGSYGFVE 188
++ +GP+ GKST LR L + R+ GE+ ++G K V+
Sbjct: 28 EKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ-------VD 80
Query: 189 RETTLIGSL---------TVREYLYYSALLQLPG-----FFCQRKNVVEDAIHAMSLSDY 234
+G + ++ E + Y L++ G F QR VE+ + +L D
Sbjct: 81 ELRKNVGMVFQRPNPFPKSIFENVAYG--LRVNGVKDNAFIRQR---VEETLKGAALWDE 135
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
+ + L G+++R+ IAR + + P VL +DEP LD +S
Sbjct: 136 VKDKLKESAF--ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPIS 181
|
Length = 250 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 7e-05
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 10/200 (5%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARM-YGEVFVNGAKSEMPYGSYGFVERETTL 193
G+ T ++G SGKSTLL+ + G L P ++ G++ V+ + V ++ +
Sbjct: 32 GSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP---VRKKVGV 88
Query: 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG---LPC 250
+ + L+ +L+ F Q + ++ ++ + + K L
Sbjct: 89 VFQFPESQ-LFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSG 147
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310
G+ RRV IA L M P VL +DEP LD + + MM + + +G T++ + +
Sbjct: 148 GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVL-VTHLMDD 206
Query: 311 VFGLFDRICLLSNGNTLFFG 330
V D + LL G+ + G
Sbjct: 207 VADYADYVYLLEKGHIISCG 226
|
Length = 288 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 8e-05
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 18/186 (9%)
Query: 121 YSDKVVKSSNGYALP---GTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGA 175
Y +K ++ N LP +T ++GP+ GKST LR + L + ++ GEV ++G
Sbjct: 14 YGEK--QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGK 71
Query: 176 K-SEMPYGSYGFVERETTLIG-----SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM 229
+ +R + +++ + + Y + + +VE A+
Sbjct: 72 NIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKA 131
Query: 230 SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---M 286
+L D + L G+++R+ IAR + ++P V+ +DEP LD +S L +
Sbjct: 132 ALWDEVKDDLKKSAL--KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDL 189
Query: 287 MVTLKK 292
MV LKK
Sbjct: 190 MVELKK 195
|
Length = 251 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 8e-05
Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 24/171 (14%)
Query: 138 MTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYG---------SYGF 186
+T ++GP+ GKSTLLR + L ++ G++ ++G E YG G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG---EDIYGNIDVADLRIKVGM 87
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQR--KNVVEDAIHAMSLSDYANKLIGGHCY 244
V ++ +++ E + Y L+ G ++ VVE ++ +L D + H +
Sbjct: 88 VFQKPNPF-PMSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAF 144
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKK 292
GL G+++R+ IAR + M P V+ +DEP LD ++ +M LKK
Sbjct: 145 --GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK 193
|
Length = 249 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 9e-05
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 24/189 (12%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSYGFVERETTLIGSLTV 199
++GP +GKSTLL+ I G L ++ GE+ +G + G + L +LT
Sbjct: 31 LLGPNGAGKSTLLKMITGILRPTS---GEIIFDGHPWTRKDLHKIGSLIESPPLYENLTA 87
Query: 200 REYL-YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258
RE L ++ LL LP + +++ ++ + L++ K K G ++R+ I
Sbjct: 88 RENLKVHTTLLGLP------DSRIDEVLNIVDLTNTGKKKA------KQFSLGMKQRLGI 135
Query: 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS---TEVFGLF 315
A L+ P +L +DEP LD + + ++ G T++ SS +EV L
Sbjct: 136 AIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVIL----SSHILSEVQQLA 191
Query: 316 DRICLLSNG 324
D I ++S G
Sbjct: 192 DHIGIISEG 200
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 38/184 (20%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---SEMPYGS--------Y 184
G V++GP+ +GKS+LLR + L R G + + G S+ P
Sbjct: 28 GETLVLLGPSGAGKSSLLRVL--NLLEMPRS-GTLNIAGNHFDFSKTPSDKAIRELRRNV 84
Query: 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA--------MSLSDYAN 236
G V ++ L LTV++ L++ P C+ + +D A + L YA+
Sbjct: 85 GMVFQQYNLWPHLTVQQ-----NLIEAP---CRVLGLSKDQALARAEKLLERLRLKPYAD 136
Query: 237 KLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLAS 295
+ + L G+++RV IAR L+M P VL DEP LD ++A ++ + +++LA
Sbjct: 137 R------FPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI-IRELAE 189
Query: 296 TGCT 299
TG T
Sbjct: 190 TGIT 193
|
Length = 242 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 29/203 (14%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG--------FVERETT 192
I+G SGKSTL + G L G+V V+G + G F ET
Sbjct: 33 IIGKNGSGKSTLALHLNGLLRPQK---GKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQ 89
Query: 193 LIGSLTVREYLYYSALLQLPGFFC----QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248
+G TV E L + P C + + V+ A+ + L Y H K L
Sbjct: 90 FVGR-TVEEDLAFG-----PENLCLPPIEIRKRVDRALAEIGLEKYR------HRSPKTL 137
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308
G+ + V +A L M P L DE LD S + ++ +KKL G T+++ + +
Sbjct: 138 SGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITH--N 195
Query: 309 TEVFGLFDRICLLSNGNTLFFGE 331
E DRI ++ G + GE
Sbjct: 196 LEELHDADRIIVMDRGKIVLEGE 218
|
Length = 274 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 32/160 (20%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G ++G SGKSTL++ + G L P S G++ ++G + ++ L+
Sbjct: 33 GEFVGLIGHTGSGKSTLIQHLNGLLKPTS----GKIIIDGVDITDKKVKLSDIRKKVGLV 88
Query: 195 GSLTVREY-LYYSALLQLPGFFCQRKNVVEDAIH-----AMSL-----SDYANK----LI 239
EY L+ + + F + E+ I AM++ DY +K L
Sbjct: 89 --FQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELS 146
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
GG ++RRV IA + M P +L +DEP LD
Sbjct: 147 GG----------QKRRVAIAGVVAMEPKILILDEPTAGLD 176
|
Length = 287 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 53/213 (24%), Positives = 82/213 (38%), Gaps = 34/213 (15%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEV----FVNGAKSEMPYGSYGFVERETTLIGS 196
I+G + SGKSTL+ G + YG + G K ++
Sbjct: 57 IIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKE 113
Query: 197 LTVREYLYYSALLQLPGF--FCQRKNVVEDAIH----AMSLSD---------YANKLIGG 241
L R S + Q P + F K+ +E I A+ + Y NK+
Sbjct: 114 LRRR----VSMVFQFPEYQLF---KDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD 166
Query: 242 HCYMK----GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG 297
Y++ GL G++RRV IA L ++P +L DEP LD MM + +
Sbjct: 167 DSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANN 226
Query: 298 CTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
T +F I + V + D + ++ G L G
Sbjct: 227 KT-VFVITHTMEHVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-04
Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 42/201 (20%)
Query: 147 SGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY--------GFV--ERETT-LIG 195
+G++ L RA+ G P S+ GE+ ++G + S +V +R++ L+
Sbjct: 296 AGRTELARALFGARPASS---GEILLDG--KPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350
Query: 196 SLTVREYLYYSALLQL-PGFFCQRKN---VVEDAIHAM-----SLSDYANKLIGGHCYMK 246
+++ E + ++L + R+ + E I + S L GG+
Sbjct: 351 DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGN---- 406
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA-LLMMVTLKKLASTGCTLLFTIN 305
+++V +AR L P VL +DEP +D V A + +++LA+ G +L
Sbjct: 407 ------QQKVVLARWLATDPKVLILDEPTRGID-VGAKAEIYRLIRELAAEGKAILMI-- 457
Query: 306 QSST--EVFGLFDRICLLSNG 324
SS E+ GL DRI ++ G
Sbjct: 458 -SSELPELLGLSDRILVMREG 477
|
Length = 500 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 19/169 (11%)
Query: 138 MTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195
+T I+GP+ GKST ++ + ++ + ++ GE+ NG S + G VE IG
Sbjct: 40 VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG--SNILKGKVDLVELRKN-IG 96
Query: 196 SL---------TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246
+ ++ + + Y + + + +VE ++ ++L D + H
Sbjct: 97 MVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRL--HTQAL 154
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKK 292
L G+++R+ IAR L P VL +DEP LD VS +++ LK+
Sbjct: 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE 203
|
Length = 259 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN-QSST 309
G+++R+ IAR L +RP V+ +DEP LD +S+ + TL +L ++ T N Q +
Sbjct: 151 GQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAG 210
Query: 310 EVFGLFDRICLLSNGNTLFFGET 332
+ D+ L NG+ + G T
Sbjct: 211 RI---SDQTAFLMNGDLIEAGPT 230
|
Length = 251 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
L G++RRV +A L M P L DEP LD ++ L G T++
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTII 219
|
Length = 305 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 306
L G+R+R+ +AR L P ++ +DEP +LDS + + + G T++ ++
Sbjct: 472 TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHR 531
Query: 307 SSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAG 343
S D+I +L +G FG L
Sbjct: 532 PS--ALASVDKILVLQDGRIAAFGPREEVLAKVLRPP 566
|
Length = 580 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 22/197 (11%)
Query: 136 GTMTVIMGPAKSGKSTLL-------RAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVE 188
G + ++G +GK+TLL RA +GR+ G+ + +++ + V
Sbjct: 31 GEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFD----GKDITDWQTAKIMREAVAIVP 86
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSL-SDYANKLIGGHCYMKG 247
+ +TV E L + GFF +R E L + I M G
Sbjct: 87 EGRRVFSRMTVEENL------AMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSG 140
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307
GE++ + I R L+ +P +L +DEP L + + T+++L G T +F + Q+
Sbjct: 141 ---GEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMT-IFLVEQN 196
Query: 308 STEVFGLFDRICLLSNG 324
+ + L DR +L NG
Sbjct: 197 ANQALKLADRGYVLENG 213
|
Length = 237 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 36/179 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL---------PHSARMYGEVFVNGAKSEMPYGSYG 185
PG + ++G + +GK+TLLR I G P S ++ EV N + +P G Y
Sbjct: 408 PGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKV--EVPKNTVSALIP-GEYE 464
Query: 186 FVERETTLIGSL--TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC 243
E T++ L + +L G Y K
Sbjct: 465 PEFGEVTILEHLRSKTGDLNAAVEILNRAG--------------LSDAVLYRRKF----- 505
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLL 301
L G++ R ++A+ L RP+VL IDE HLD ++A+ + + +LA G TL+
Sbjct: 506 --SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562
|
Length = 593 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 41/245 (16%)
Query: 71 TTPASPSLSKL-NSGSLPSP-PLPEGAAVARKIAGASVVWKDLTVTIKG---KRRYSDKV 125
+ P P KL NS P PLPE A+ + V + I+ KR V
Sbjct: 246 SAPTHPYTQKLLNSEPSGDPVPLPEPASPLLDVEQLQVAFP-----IRKGILKRTVDHNV 300
Query: 126 VKSSNGYAL-PGTMTVIMGPAKSGKST----LLRAIAGRLPHSARMYGEVFVNGA----- 175
V + + L PG ++G + SGKST LLR I + GE++ +G
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ--------GEIWFDGQPLHNL 352
Query: 176 --KSEMPYGS---YGFVERETTLIGSLTVREYLYYSALLQLPGFFC-QRKNVVEDAIHAM 229
+ +P F + ++L L V + + + P QR+ V + +
Sbjct: 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEV 412
Query: 230 SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLMMV 288
L D + H Y G+R+R+ IAR L+++P ++ +DEP LD +V A ++ +
Sbjct: 413 GL-DPETR----HRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILAL 467
Query: 289 TLKKL 293
LK L
Sbjct: 468 -LKSL 471
|
Length = 529 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 228 AMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLM 286
A L+DY ++L GG ER+RV IA L+ RP +L DEP LD SV A ++
Sbjct: 147 AKRLTDYPHQLSGG----------ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQIL 196
Query: 287 MVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFP 345
+ L++L LLF I + + V L DR+ ++ NG + E FS P
Sbjct: 197 QL-LRELQQELNMGLLF-ITHNLSIVRKLADRVAVMQNGRCV---EQNRAATLFSAPTHP 251
|
Length = 529 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 18/199 (9%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G + ++G + SGKS AI G L P + GE+ ++G P R I
Sbjct: 12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDG----RPLLPLSIRGRHIATI 67
Query: 195 GS---------LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
T+ + + L L Q + ++ +A+ A+ L D L Y
Sbjct: 68 MQNPRTAFNPLFTMGNHAIET-LRSLGKLSKQARALILEALEAVGLPDPEEVL---KKYP 123
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
L G +RV IA L++ P L DEP LD V+ ++ L++L T + I
Sbjct: 124 FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLIT 183
Query: 306 QSSTEVFGLFDRICLLSNG 324
V + D + ++ +G
Sbjct: 184 HDLGVVARIADEVAVMDDG 202
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL- 193
PG + ++GP +GKSTL+R + G + G ++R L
Sbjct: 29 PGKILTLLGPNGAGKSTLVRVVLGLVAPDE--------------------GVIKRNGKLR 68
Query: 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253
IG + + YL + L + F R ++ I A LI M+ L GE
Sbjct: 69 IGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAP--MQKLSGGET 126
Query: 254 RRVRIARELVMRPHVLFIDEPLYHLD 279
+RV +AR L+ RP +L +DEP +D
Sbjct: 127 QRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 32/204 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGA-----KSEMPYGSYG 185
G I+G + +GKST+LR + R Y G + ++G + + G
Sbjct: 288 LGKTVAIVGESGAGKSTILRLLF-------RFYDVNSGSITIDGQDIRDVTQQSLRRAIG 340
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V ++T L + Y+ P V A A + D+ L G+
Sbjct: 341 IVPQDTVLFND-----TIAYNIKYGRPD---ATAEEVGAAAEAAQIHDFIQSLPEGYDTG 392
Query: 246 KG-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
G L GE++RV IAR ++ P +L +DE LD+ + + L+++++ G T
Sbjct: 393 VGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA-GRTT 451
Query: 301 LFTINQSSTEVFGLFDRICLLSNG 324
L ++ ST + D I +L NG
Sbjct: 452 LVIAHRLSTIIDA--DEIIVLDNG 473
|
Length = 497 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 26/158 (16%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY---------GSYGF 186
G +T+I+G GKS+LL AI G + + G+V + P S +
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEM---QTLEGKVHWSNKNESEPSFEATRSRNRYSVAY 83
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246
++ L+ + TV E + + + F QR V DA SL + L G
Sbjct: 84 AAQKPWLLNA-TVEENITFGS-----PFNKQRYKAVTDAC---SLQPDIDLLPFGDQTEI 134
Query: 247 G-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
G L G+R+R+ +AR L +++F+D+P LD
Sbjct: 135 GERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 23/174 (13%)
Query: 121 YSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKS 177
Y + + VK N L +T I+GP+ GKST LRAI L S G + +G
Sbjct: 49 YGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG--- 105
Query: 178 EMPYGSYGFVERETTL---IGSL---------TVREYLYYSALLQLPGFFCQRKNVVEDA 225
E YG + E L IG + ++ + + Y L Q + +VE +
Sbjct: 106 EDIYGKF---TDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKS 162
Query: 226 IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
+ +L D + + + GL G+++R+ +AR L + P +L +DEP LD
Sbjct: 163 LRKAALWDEVSDRLDKNAL--GLSGGQQQRLCVARTLAVEPEILLLDEPTSALD 214
|
Length = 286 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 26/221 (11%)
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
V+K+ N G M I G SGK++LL I G L S G++ +G S
Sbjct: 48 VGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSE---GKIKHSGRISFSS 104
Query: 181 YGSY---GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANK 237
S+ G + +E + G ++ EY Y S + CQ +E+ I D
Sbjct: 105 QFSWIMPGTI-KENIIFG-VSYDEYRYKSVVKA-----CQ----LEEDITKFPEKDNTVL 153
Query: 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLAST 296
GG L G+R R+ +AR + + +D P +LD + + + + KL +
Sbjct: 154 GEGG----ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMAN 209
Query: 297 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337
+L T S E D+I +L G++ F+G T + LQ
Sbjct: 210 KTRILVT---SKMEHLKKADKILILHEGSSYFYG-TFSELQ 246
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 21/176 (11%)
Query: 121 YSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKS 177
Y+D K + + N L ++T ++GP+ GKST LR + L ++ G V G
Sbjct: 17 YTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG--K 74
Query: 178 EMPYGSYGFVE--RETTLIGS------LTVREYLYYSALLQLPGFFCQRK--NVVEDAIH 227
+ ++ +E R+ ++ +++ + + Y ++ G ++K +VE ++
Sbjct: 75 NIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGP--KIHGTKDKKKLDEIVEQSLK 132
Query: 228 AMSL-SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
+L ++ +KL + G G+++R+ IAR L + P+V+ +DEP LD +S
Sbjct: 133 KSALWNEVKDKLNTNALSLSG---GQQQRLCIARTLAIEPNVILMDEPTSALDPIS 185
|
Length = 254 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 42/190 (22%), Positives = 81/190 (42%), Gaps = 27/190 (14%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGA----------KSEMPYGS 183
G++ ++G SGKSTL +A+ G RL A +SE S
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWS 92
Query: 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC 243
+ + + ++G + L+ + + +V A+ + + ++ ++ IG
Sbjct: 93 FPVLVEDVVMMGRYG------HMGWLRRAK--KRDRQIVTAALARVDMVEFRHRQIGE-- 142
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF- 302
L G+++RV +AR + + V+ +DEP +D + ++ L++L G T+L
Sbjct: 143 ----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVS 198
Query: 303 TINQSSTEVF 312
T N S F
Sbjct: 199 THNLGSVTEF 208
|
Length = 272 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 22/155 (14%)
Query: 142 MGPAKSGKSTLLRA------------IAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVER 189
+GP+ GKSTLLR + GRL + R + +N K G +R
Sbjct: 52 IGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGM--VFQR 109
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSL-SDYANKLIGGHCYMKGL 248
S + E + ++ + G+ +VED++ ++ + +KL + G
Sbjct: 110 PNPFPKS--IYENIAFAP--RANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSG- 164
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
G+++R+ IAR + M+P VL +DEP LD +S
Sbjct: 165 --GQQQRLCIARAIAMKPDVLLMDEPCSALDPIST 197
|
Length = 274 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 64/272 (23%), Positives = 100/272 (36%), Gaps = 56/272 (20%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTL---LRAIAGRLPHSAR 165
K+LT GK + G L I+G + +GKS L LR + P S
Sbjct: 4 KNLTKKFDGKEVLKNISFTIEEGEVLG-----ILGRSGAGKSVLMHVLRGMDQYEPTS-- 56
Query: 166 MYGEVFVNGAKSEMPYGSYGFVERETTL-------IGSLTVREY-------LYYSALLQL 211
G + + A E G+VER + + G+L E + +
Sbjct: 57 --GRIIYHVALCE----KCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKR 110
Query: 212 PGFFCQR-------KNVVEDAIHAMSLSDY--------ANKLIG----GHCYM---KGLP 249
QR V+++ + A+ Y A LI H + L
Sbjct: 111 IAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLS 170
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSS 308
GE++RV +AR+L P + DEP LD +A L+ L++ ++G +++ T
Sbjct: 171 GGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT--SHW 228
Query: 309 TEVFG-LFDRICLLSNGNTLFFGETLACLQHF 339
EV L D+ L NG G + F
Sbjct: 229 PEVIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 53/233 (22%), Positives = 102/233 (43%), Gaps = 19/233 (8%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEMPYGSYGFVER 189
PG ++G +GK+T + + G + G+ V G S++ + + G+ +
Sbjct: 1964 PGECFGLLGVNGAGKTTTFKMLTG---DTTVTSGDATVAGKSILTNISDV-HQNMGYCPQ 2019
Query: 190 ETTLIGSLTVREYLY-YSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248
+ LT RE+LY Y+ L +P ++ V +I ++ LS YA++L G +
Sbjct: 2020 FDAIDDLLTGREHLYLYARLRGVPAEEIEK--VANWSIQSLGLSLYADRLAGTY------ 2071
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308
G +R++ A L+ P ++ +DEP +D + ++ T+ + G ++ T + S
Sbjct: 2072 SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLT-SHSM 2130
Query: 309 TEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAIN 361
E L R+ ++ G G F + ++SP D L +N
Sbjct: 2131 EECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSPKDDLLPDLN 2183
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 47/148 (31%), Positives = 65/148 (43%), Gaps = 23/148 (15%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG-SLTV 199
++GP GKST+L+ I+G L S+ G VF AK M S V+ G L+
Sbjct: 540 MVGPNGIGKSTILKLISGELQPSS---GTVF-RSAKVRMAVFSQHHVD------GLDLSS 589
Query: 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259
LY PG Q+ H S N + M L G++ RV A
Sbjct: 590 NPLLYMMRCF--PGVPEQKLRA-----HLGSFGVTGNLALQP---MYTLSGGQKSRVAFA 639
Query: 260 RELVMRPHVLFIDEPLYH--LDSVSALL 285
+ +PH+L +DEP H LD+V AL+
Sbjct: 640 KITFKKPHILLLDEPSNHLDLDAVEALI 667
|
Length = 718 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKK 292
GL G+++R+ IAR L + P VL +DEP LD +S L ++ LKK
Sbjct: 146 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK 194
|
Length = 250 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 6e-04
Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAKSEMPYGSY-----G 185
PG +T ++GP+ SGKST++ + Y G+V ++G Y
Sbjct: 39 PGEVTALVGPSGSGKSTVVALLE-------NFYQPQGGQVLLDGKPISQYEHKYLHSKVS 91
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V +E L ++++ + Y L C + V E A A + + ++L G+
Sbjct: 92 LVGQEPVLFAR-SLQDNIAYG----LQS--CSFECVKEAAQKAHA-HSFISELASGYDTE 143
Query: 246 KG-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
G L G+++RV IAR L+ P VL +DE LD+ S
Sbjct: 144 VGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 7e-04
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 21/179 (11%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF---VNGAKSEMPYGSYGFVERE 190
LP +T I G GKS+LLR IAG + S+ G ++ N PY +Y +
Sbjct: 24 LPSAITYIKGANGCGKSSLLRMIAGIMQPSS---GNIYYKNCNINNIAKPYCTY--IGHN 78
Query: 191 TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250
L +TV E L + + + AIH L D ++ CY L
Sbjct: 79 LGLKLEMTVFENLKFWSE------IYNSAETLYAAIHYFKLHDLLDE----KCY--SLSS 126
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVS-ALLMMVTLKKLASTGCTLLFTINQSS 308
G ++ V IAR + + + +DE +L + LL + + K S G LL + +SS
Sbjct: 127 GMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS 185
|
Length = 195 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
K+L ++ +++K N G + IMGP SGKSTL + IAG P + G
Sbjct: 11 KNLHASVNEN-----EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH-PAYKILEG 64
Query: 169 EVFVNG 174
++ G
Sbjct: 65 DILFKG 70
|
Length = 252 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 14/165 (8%)
Query: 138 MTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195
+T +GP+ GKST+LR L R+ G+V +G P V R ++
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVF 97
Query: 196 ------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGL 248
++ + + Y A ++ G+ +VE ++ +L D +KL + G
Sbjct: 98 QKPNPFPKSIYDNIAYGA--RINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSG- 154
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
G+++R+ IAR + ++P V+ +DEP LD +S L + + +L
Sbjct: 155 --GQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL 197
|
Length = 264 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT-LLF 302
L G++R I R LV P +L +DEPL LD ++ L+ + L S G T LLF
Sbjct: 401 SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLF 457
|
Length = 490 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
L G+ RRV IA L M P +L +DEP LD +M KKL +G T++
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIV 199
|
Length = 280 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.001
Identities = 45/199 (22%), Positives = 90/199 (45%), Gaps = 15/199 (7%)
Query: 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPY 181
++K+ N ++T ++GP+ GKST +R + L R G ++++G P
Sbjct: 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76
Query: 182 GSYGFVERETTLIGSL------TVREYLYYSALLQLPGFFCQRK--NVVEDAIHAMSLSD 233
+ ++ ++ ++ + + Y L++ G + VE+++ A +L D
Sbjct: 77 VDVVELRKKVGMVFQKPNPFPKSIFDNVAYG--LRIHGEDDEDFIEERVEESLKAAALWD 134
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
+ GL G+++R+ IAR + + P V+ +DEP LD +S + + KL
Sbjct: 135 EVKDKLDKSAL--GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL 192
Query: 294 ASTGCTLLFTIN-QSSTEV 311
++ T N Q +T V
Sbjct: 193 KEDYTIVIVTHNMQQATRV 211
|
Length = 250 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.001
Identities = 33/184 (17%), Positives = 58/184 (31%), Gaps = 63/184 (34%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
PG + +I+GP SGK+TL RA+A L G ++++G ++
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDG----------------EDIL 42
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254
+ + L + G R
Sbjct: 43 EEVLDQLLLIIVGGKKASGSGELR------------------------------------ 66
Query: 255 RVRIARELVMRPH--VLFIDEPLYHLDSVSALLMM------VTLKKLASTGCTLLFTINQ 306
+R+A L + VL +DE LD+ L++ + L + T++ T N
Sbjct: 67 -LRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125
Query: 307 SSTE 310
Sbjct: 126 EKDL 129
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 42/181 (23%)
Query: 137 TMTVIMGPAKSGKSTLLRAIAGRLP---HSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
+T ++GP+ SGKST LR++ R+ AR+ G++ G ++
Sbjct: 47 KITALIGPSGSGKSTYLRSL-NRMNDTIDIARVTGQILYRG------------IDINRKE 93
Query: 194 IGSLTVREYLYYSALLQLPGFFCQ--RKNV------------------VEDAIHAMSLSD 233
I +R+++ + Q P F + +N+ VE ++ +L D
Sbjct: 94 INVYEMRKHI--GMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD 151
Query: 234 YA-NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
+ L + G G+++R+ IAR + ++P +L +DEP LD +S + + T+ +
Sbjct: 152 QVKDDLHKSALTLSG---GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFE 208
Query: 293 L 293
L
Sbjct: 209 L 209
|
Length = 267 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 32/222 (14%)
Query: 126 VKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSA---RMYG-EVFVNGAKSE 178
VK+ +G AL PG + ++G +GKST+++ + G A G EV NG KS
Sbjct: 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSS 76
Query: 179 MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVE-DAIHAMSLSDYANK 237
G G + +E LI LT+ E + F R+ V I + A+K
Sbjct: 77 QEAG-IGIIHQELNLIPQLTIAENI-----------FLGREFVNRFGRIDWKKMYAEADK 124
Query: 238 LI-------GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL-DSVSALLMMVT 289
L+ + L GE++ V IA+ L V+ +DEP L D+ + L V
Sbjct: 125 LLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRV- 183
Query: 290 LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331
+++L S G +++ I+ E+F + D + + +G F E
Sbjct: 184 IRELKSQGRGIVY-ISHRLKEIFEICDDVTVFRDGQ--FIAE 222
|
Length = 501 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 51/176 (28%), Positives = 73/176 (41%), Gaps = 37/176 (21%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS----YGFVERET 191
G +T IMGP+ GK+TLLR I G++ GE+ +G +P S Y +R +
Sbjct: 33 GKITAIMGPSGIGKTTLLRLIGGQIAPDH---GEILFDG--ENIPAMSRSRLYTVRKRMS 87
Query: 192 TLIGS------LTVREYLYYSAL--LQLPGFFCQRKNVVEDAIHA---MSLSDYANKLIG 240
L S + V + + Y QLP +H+ M L A L G
Sbjct: 88 MLFQSGALFTDMNVFDNVAYPLREHTQLP----------APLLHSTVMMKLE--AVGLRG 135
Query: 241 GHCYMKG-LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS 295
M L G RR +AR + + P ++ DEP D ++ M L KL S
Sbjct: 136 AAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT----MGVLVKLIS 187
|
Length = 269 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 51/189 (26%), Positives = 75/189 (39%), Gaps = 49/189 (25%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVR 200
++G + GKSTL R I G ++ GE+ G ER V
Sbjct: 44 LVGESGCGKSTLGRLILGLEEPTS---GEILFEG----KDITKLSKEERRER------VL 90
Query: 201 EYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260
E L + LP F R Y ++L GG +R+R+ IAR
Sbjct: 91 ELL---EKVGLPEEFLYR---------------YPHELSGG----------QRQRIGIAR 122
Query: 261 ELVMRPHVLFIDEPLYHLD-SVSA--LLMMVTLKKLASTGCTLLF-TINQSSTEVFGLFD 316
L + P ++ DEP+ LD SV A L ++ L++ G T LF + + S D
Sbjct: 123 ALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE--ELGLTYLFISHDLSVVRYIS--D 178
Query: 317 RICLLSNGN 325
RI ++ G
Sbjct: 179 RIAVMYLGK 187
|
Length = 268 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 38/178 (21%), Positives = 68/178 (38%), Gaps = 35/178 (19%)
Query: 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSA 164
V + DL T Y D ++ G G + I+GP GK+T ++ +AG + P
Sbjct: 343 VEYPDLKKT------YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--- 393
Query: 165 RMYGEVFVNGAKSEMPYGSYG--FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVV 222
G++ ++ SY ++ + TV + L + +
Sbjct: 394 -------DEGSEEDLKV-SYKPQYISPDYDG----TVEDLLRSAIRSAFGSSY-----FK 436
Query: 223 EDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
+ + ++L D + + L GE +RV IA L + +DEP +LD
Sbjct: 437 TEIVKPLNLEDLLERPVDE------LSGGELQRVAIAAALSREADLYLLDEPSAYLDV 488
|
Length = 591 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159
KDL V+++ K +++ N PG + IMGP SGKSTL +AGR
Sbjct: 5 KDLHVSVEDK-----AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50
|
Length = 248 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 25/183 (13%)
Query: 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGS 183
V+ S+ +T +GP+ GKST+LR++ L R G V G YG
Sbjct: 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV---YGK 80
Query: 184 ----------YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD 233
G V ++ S+++ + + + L+L + + V+ A+ +L D
Sbjct: 81 GVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFG--LRLNRYKGDLGDRVKHALQGAALWD 137
Query: 234 -YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVT 289
+KL + G G+++R+ IAR + P VL +DEP LD ++ +MV
Sbjct: 138 EVKDKLKVSGLSLSG---GQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVE 194
Query: 290 LKK 292
LKK
Sbjct: 195 LKK 197
|
Length = 261 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 0.002
Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 60/203 (29%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY--------GF 186
G + I G +G++ L A+ G P ++ GE+ ++G + S +
Sbjct: 25 AGEIVGIAGLVGNGQTELAEALFGLRPPAS---GEITLDG--KPVTRRSPRDAIRAGIAY 79
Query: 187 V--ER-ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC 243
V +R L+ L+V E N ++LS L GG+
Sbjct: 80 VPEDRKREGLVLDLSVAE------------------N--------IALSSL---LSGGN- 109
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
+++V +AR L P VL +DEP +D + + +++LA G +L
Sbjct: 110 ---------QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLI 160
Query: 304 INQSST--EVFGLFDRICLLSNG 324
SS E+ GL DRI ++ G
Sbjct: 161 ---SSELDELLGLCDRILVMYEG 180
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 16/180 (8%)
Query: 139 TVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGS 196
T ++GP+ GKSTLLR L R+ G++ NG + R+ IG
Sbjct: 35 TALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRK---IGM 91
Query: 197 LTVREYLY----YSALLQLPGFFCQRKN-----VVEDAIHAMSLSDYANKLIGGHCYMKG 247
+ R + Y + P ++ +VE ++ +L D + H
Sbjct: 92 VFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRL--HDSALS 149
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307
L G+++R+ IAR L + P V+ +DEP LD ++ + ++ L ++ T N
Sbjct: 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 48/215 (22%), Positives = 82/215 (38%), Gaps = 54/215 (25%)
Query: 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPG--------TMTVIMGPAKSGKSTLLRAI--- 156
W D K D V + +AL G ++T ++GP+ GKST LR +
Sbjct: 35 WTDYEFDGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRM 94
Query: 157 -----AGRLPHSARMYG-EVFVNGA-----------------------KSEMPYGSYGFV 187
A R+ S + G +++ +G + + YG
Sbjct: 95 NDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHG 154
Query: 188 ERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247
+ T L+ L R+ +VE ++ +L D N + + G
Sbjct: 155 DINTGLLARLLGRDDKD------------AEDELVERSLRQAALWDEVNDRLDDNAL--G 200
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
L G+++R+ IAR L + P V+ +DEP LD ++
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIA 235
|
Length = 305 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 221 VVEDAIHAMSL-SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
+VE ++ ++ L + ++L + G G+++R+ IAR + ++P +L +DEP LD
Sbjct: 125 IVEKSLTSVGLWEELGDRLKDSAFELSG---GQQQRLCIARAIAVKPTMLLMDEPCSALD 181
Query: 280 SVSALLMMVTLKKLASTGCTLLFTI---NQSSTEVFGLFDRICLLSNGNTLFFGET 332
V+ ++ +++L FTI S + + DR+ +G + + T
Sbjct: 182 PVATNVIENLIQEL-----KKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTT 232
|
Length = 251 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
K L GE R+ + + L+ P +L +DEP LD S + L L +G TL+ +N
Sbjct: 134 KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLN 193
|
Length = 490 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 27/180 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL--PHSA--RMYGEVFV---NGAKSEMPYGSYGFV 187
G M I+G + SGKSTL+ I G L P S R+ G+ A +++ +GF+
Sbjct: 33 AGEMVAIVGASGSGKSTLMN-ILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFI 91
Query: 188 ERETTLIGSLTVREYLYYSALLQLPGFFC-----QRKNVVEDAIHAMSLSDYANKLIGGH 242
+ L+ LT + + ++P + QR ++ + + L D
Sbjct: 92 FQRYHLLSHLTAAQNV------EVPAVYAGLERKQRLLRAQELLQRLGLEDRVE------ 139
Query: 243 CYMKG-LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
Y L G+++RV IAR L+ V+ DEP LDS S +M L +L G T++
Sbjct: 140 -YQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVI 198
|
Length = 648 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.003
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 68/256 (26%)
Query: 105 SVVWKDLTVTIKGKRRY---SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161
+ +K++++ RY V+K+ + PG I+G SGKS+LL A+
Sbjct: 2 DIEFKNVSL------RYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALF---- 51
Query: 162 HSARMY----GEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF-- 215
R+ G + ++G + + IG +R + S + Q P F
Sbjct: 52 ---RLVELSSGSILIDG--------------VDISKIGLHDLRSRI--SIIPQDPVLFSG 92
Query: 216 CQRKNV----------VEDAIHAMSLSDYANKLIGGHCYM-----KGLPCGERRRVRIAR 260
R N+ + A+ + L ++ L GG + + L G+R+ + +AR
Sbjct: 93 TIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLAR 152
Query: 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF------TINQSSTEVFGL 314
L+ + +L +DE +D + L+ T+++ A CT+L TI S
Sbjct: 153 ALLRKSKILVLDEATASVDPETDALIQKTIRE-AFKDCTVLTIAHRLDTIIDS------- 204
Query: 315 FDRICLLSNGNTLFFG 330
DRI +L G + F
Sbjct: 205 -DRILVLDKGRVVEFD 219
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLD-SVSAL---LMM 287
G+R+R+ IAR L++ P V+ DEP+ LD SV A LMM
Sbjct: 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMM 198
|
Length = 327 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.003
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
GL G+++R+ IAR L + P V+ +DEP LD +S L
Sbjct: 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTL 204
|
Length = 271 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLM 286
G ++R++IAR LV P ++F+DEP LD SV A L+
Sbjct: 155 GMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLL 191
|
Length = 258 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.004
Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 26/201 (12%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG------AKSEMPYG--SYGF 186
G + ++G + +GKSTL+R + P S G V V+G + SE+ G
Sbjct: 31 GQIYGVIGASGAGKSTLIRCVNLLERPTS----GSVIVDGQDLTTLSNSELTKARRQIGM 86
Query: 187 VERETTLIGSLTVREYLYYSAL-LQLPGFFCQR-KNVVEDAIHAMSLSDYANKLIGGHCY 244
+ + L+ S TV + AL L+L K V + + + L D + Y
Sbjct: 87 IFQHFNLLSSRTVFGNV---ALPLELDNTPKDEIKRKVTELLALVGLGDKHDS------Y 137
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFT 303
L G+++RV IAR L P VL DE LD + ++ LK++ G T+L
Sbjct: 138 PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILL- 196
Query: 304 INQSSTEVFGLFDRICLLSNG 324
I V + D + ++SNG
Sbjct: 197 ITHEMDVVKRICDCVAVISNG 217
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 50/190 (26%), Positives = 72/190 (37%), Gaps = 52/190 (27%)
Query: 132 YALPGTMTVIMGPAKSGKSTLLRAIAG-----------------RLPHSA--RMYGEVFV 172
PG I+GP+ SGKSTLLR + G L A R G V
Sbjct: 475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQ 534
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-- 230
NG M G + LT+ E ++ G + I AM
Sbjct: 535 NG--RLMS----GSIFENIAGGAPLTLDEAW---EAARMAGL--------AEDIRAMPMG 577
Query: 231 ----LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286
+S+ L GG +R+R+ IAR LV +P +L DE LD+ + ++
Sbjct: 578 MHTVISEGGGTLSGG----------QRQRLLIARALVRKPRILLFDEATSALDNRTQAIV 627
Query: 287 MVTLKKLAST 296
+L++L T
Sbjct: 628 SESLERLKVT 637
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.004
Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 20/170 (11%)
Query: 137 TMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
++T ++GP+ GKST +R + L + R+ G+V + G E Y V +
Sbjct: 39 SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG---EDIYEPDVDVVELRKNV 95
Query: 195 GSLTVREYLY----YSALLQLPGFFCQRKN----VVEDAIHAMSL-SDYANKLIGGHCYM 245
G + + + Y + P K VVE+A+ + +L + +++L +
Sbjct: 96 GMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSL 155
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKK 292
G G+++R+ IAR L ++P ++ DEP LD +S +++ LKK
Sbjct: 156 SG---GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK 202
|
Length = 258 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 43/157 (27%), Positives = 62/157 (39%), Gaps = 31/157 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAK-SEMPYGSY----GFVE 188
G +I GP+ GKSTLL+ +A + P S G + G S + Y +
Sbjct: 32 AGEFKLITGPSGCGKSTLLKIVASLISPTS----GTLLFEGEDISTLKPEIYRQQVSYCA 87
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYA------NKLIGGH 242
+ TL G TV + L + + R + AI L +A K I
Sbjct: 88 QTPTLFGD-TVYDNLIFPWQI--------RNQQPDPAIFLDDLERFALPDTILTKNI--- 135
Query: 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
L GE++R+ + R L P VL +DE LD
Sbjct: 136 ---AELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.004
Identities = 47/204 (23%), Positives = 90/204 (44%), Gaps = 31/204 (15%)
Query: 138 MTV-IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSYGFVERETTLI- 194
TV ++G + GKSTL R + G L A+ G V G ++ R+ L+
Sbjct: 38 ETVGLLGRSGCGKSTLARLLLG-LEKPAQ--GTVSFRGQDLYQLDRKQRRAFRRDVQLVF 94
Query: 195 ----GSL----TVREYL-----YYSALLQLPGFFCQRKNVVEDAIHAMSL-SDYANKLIG 240
++ TVR+ + + ++L + ++K + + + + L S+ A+K
Sbjct: 95 QDSPSAVNPRMTVRQIIGEPLRHLTSLDE-----SEQKARIAELLDMVGLRSEDADK--- 146
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
+ L G+ +R+ IAR L ++P ++ +DE + +LD V +++ L+KL T
Sbjct: 147 ---LPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTA 203
Query: 301 LFTINQSSTEVFGLFDRICLLSNG 324
I V R+ ++ G
Sbjct: 204 YLFITHDLRLVQSFCQRVAVMDKG 227
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 641 | |||
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.97 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.97 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.97 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.97 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.97 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.97 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.96 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.96 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.95 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.95 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.94 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.94 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.94 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.93 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.93 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.93 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.92 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.92 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.91 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.91 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.9 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.9 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.9 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.9 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.89 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.88 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.88 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.86 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.85 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.85 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.84 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.84 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.83 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.83 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.81 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.8 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.8 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.8 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.77 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.76 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.76 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.75 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.75 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.75 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.73 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.72 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.71 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.7 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.67 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.64 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.62 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.6 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.57 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.5 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.46 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.44 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.41 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.37 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.37 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.3 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.3 | |
| TIGR01247 | 236 | drrB daunorubicin resistance ABC transporter membr | 99.29 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.29 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.28 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.27 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.23 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.23 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.22 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.21 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.19 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.19 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.16 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.16 | |
| TIGR03861 | 253 | phenyl_ABC_PedC alcohol ABC transporter, permease | 99.16 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.14 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.13 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.1 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.1 | |
| TIGR00025 | 232 | Mtu_efflux ABC transporter efflux protein, DrrB fa | 99.07 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.06 | |
| TIGR01291 | 253 | nodJ ABC-2 type transporter, NodJ family. Nearly a | 99.06 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.06 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.03 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.02 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.01 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.96 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.94 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.93 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.89 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.84 | |
| TIGR03062 | 208 | pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa | 98.83 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.79 | |
| PRK15066 | 257 | inner membrane transport permease; Provisional | 98.77 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.76 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.76 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.75 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.73 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.69 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.65 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.63 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.62 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.54 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.5 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.49 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.48 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.47 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.43 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.39 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.38 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.35 | |
| TIGR01248 | 152 | drrC daunorubicin resistance protein C. The model | 98.33 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.33 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.32 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.31 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.23 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.23 | |
| COG0842 | 286 | ABC-type multidrug transport system, permease comp | 98.2 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.15 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.15 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.15 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.14 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.06 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.05 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.04 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 98.0 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.0 | |
| PRK13764 | 602 | ATPase; Provisional | 97.97 | |
| TIGR03518 | 240 | ABC_perm_GldF gliding motility-associated ABC tran | 97.94 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 97.93 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 97.92 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 97.91 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 97.91 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 97.91 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.91 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 97.89 |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-98 Score=852.05 Aligned_cols=514 Identities=32% Similarity=0.536 Sum_probs=451.1
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CC
Q 006548 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MP 180 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~--~~ 180 (641)
+..+.|+|++++.+++....+++|+|||+.++|||++||||||||||||||++|+|+.+.+...+|+|++||++.. ..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~ 102 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSF 102 (613)
T ss_pred cceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhh
Confidence 4578999999998765435689999999999999999999999999999999999999876568999999996543 23
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCc--cchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~--~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
++.+|||.|+|.++|++||+|+|.|.+.+++|.. ..+++++|+++++++||.+++|+++| +...+++||||||||+|
T Consensus 103 ~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig-~~~~rgiSGGErkRvsi 181 (613)
T KOG0061|consen 103 RKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIG-NPGIRGLSGGERKRVSI 181 (613)
T ss_pred hheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceec-CCCCCccccchhhHHHH
Confidence 4679999999999999999999999999999874 33478899999999999999999998 55559999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (641)
|.+|++||.||||||||||||+.++.++++.|+++|++|+|||+|+|||+.+++++||++++|.+|+++|+|+++++.++
T Consensus 182 a~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~f 261 (613)
T KOG0061|consen 182 ALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEF 261 (613)
T ss_pred HHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHH
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCCCchHHHHHHHhcc--hhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhc-CHHHHHHHHHHHhh
Q 006548 339 FSNAGFPCPIMQSPSDHFLRAINTD--FDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQS-SADAAAVETMILRL 415 (641)
Q Consensus 339 f~~~g~~~~~~~~~~d~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-s~~~~~~~~~~~~~ 415 (641)
|++.|++||...||+|+++++++.+ .+..... .........++. ....+.........
T Consensus 262 f~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (613)
T KOG0061|consen 262 FSSLGFPCPELENPADFLLDLLSVDSGTRELEEA-------------------VRIAKLINKFSQTDNLKKTLEALEKSL 322 (613)
T ss_pred HHhCCCCCCCcCChHHHHHHHHccCCCchhHHhH-------------------HHHHHHhhhccccchhhhhHHHHhhhc
Confidence 9999999999999999999988743 1111000 011111222221 11111110000000
Q ss_pred hhccCCCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Q 006548 416 TEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFN 495 (641)
Q Consensus 416 ~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l~~~~~~~~~r~g~lff~~~~~ 495 (641)
.+. ...+.....+||.|++.|++|.+++.+|||.+.+.|+++.+++|+++|++||+++++..++++|.|++||.+.+.
T Consensus 323 ~~~--~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~ 400 (613)
T KOG0061|consen 323 STS--KKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFM 400 (613)
T ss_pred ccc--cccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHH
Confidence 011 111112278999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-hHHHHHhhHhHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHH
Q 006548 496 SLLNIA-GVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCL 574 (641)
Q Consensus 496 ~~~~~~-~v~~~~~er~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~ 574 (641)
.|.++. +++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|++|+|||+|++++..+|++|++++++..
T Consensus 401 ~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~ 480 (613)
T KOG0061|consen 401 TFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSS 480 (613)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 888876 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 575 LVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 575 ~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
++++++++++++++||...|+.++++++++|+||+|||++.+.||+ |++|++|+|+++|+|||+
T Consensus 481 ~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~--~~~w~~~~S~~ry~~e~l 544 (613)
T KOG0061|consen 481 LVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPK--YFRWISYLSYFRYAFEAL 544 (613)
T ss_pred HHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccH--HHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999995 556799999999999996
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-94 Score=828.45 Aligned_cols=514 Identities=25% Similarity=0.420 Sum_probs=433.1
Q ss_pred CceEEEEeEEEEEeccc------------------------ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHc
Q 006548 103 GASVVWKDLTVTIKGKR------------------------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~------------------------~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG 158 (641)
+..+++.|++++++..+ .+++.+|+|+|+++++||++||+||||||||||||+|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 45678888888774221 124679999999999999999999999999999999999
Q ss_pred CCCCCCCceeEEEECCEeCCC-CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccc--hHHHHHHHHHHHcCCchHH
Q 006548 159 RLPHSARMYGEVFVNGAKSEM-PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSDYA 235 (641)
Q Consensus 159 ~~~~~~~~~G~I~~~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~--~~~~~v~~~l~~lgL~~~~ 235 (641)
+.+++. .+|+|.+||++... ..+.++||+|++.+++.+||+||+.+++.++.+.... +++++++++++.+||.++.
T Consensus 117 ~~~~~~-~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNN-FTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCc-eeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 988752 46999999987532 2356999999999999999999999988776553221 2456789999999999999
Q ss_pred hhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcC
Q 006548 236 NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315 (641)
Q Consensus 236 ~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~ 315 (641)
|+.+| +..+++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||..++.++|
T Consensus 196 ~t~vg-~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 196 NTIIG-NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred CceeC-CCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99987 77789999999999999999999999999999999999999999999999999889999999999987789999
Q ss_pred CEEEEEeCCeEEEEeChhHHHHHhhhcCCCCCCCCCchHHHHHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHH
Q 006548 316 DRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTL 395 (641)
Q Consensus 316 D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (641)
|++++|++|++++.|+++++.+||+++|++||...||+|++++.++.+... ..... .+.....+.+
T Consensus 275 D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~-----~~~~~---------~~~~~~~~~l 340 (659)
T PLN03211 275 DSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQT-----DGVSE---------REKPNVKQSL 340 (659)
T ss_pred ceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccC-----CCccc---------cccchHHHHH
Confidence 999999999999999999999999999999999999999999987653210 00000 0000112234
Q ss_pred HHHHhcCHHHHHHHHHHHh--hhh----------ccC-CCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Q 006548 396 EATYQSSADAAAVETMILR--LTE----------KEG-PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMI 462 (641)
Q Consensus 396 ~~~~~~s~~~~~~~~~~~~--~~~----------~~~-~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~ 462 (641)
.+.|++... .+..+.... ... .+. ...+..+.++||+|+.+|++|++++ +||+.+.++|++++++
T Consensus 341 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~ 418 (659)
T PLN03211 341 VASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIA 418 (659)
T ss_pred HHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHH
Confidence 444532111 111111000 000 000 0011235578999999999999998 8999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHhhHhHHHhhccCCCcchHHHHHHHHHHHHHHHHH
Q 006548 463 LTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLN-IAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFL 541 (641)
Q Consensus 463 ~~l~~G~~f~~l~~~~~~~~~r~g~lff~~~~~~~~~-~~~v~~~~~er~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~ 541 (641)
+|+++|++||+++ +.++++|.|++||++++.++.+ +..++.|+.||++|+||+.+|+|++++|++|++++|+|+.++
T Consensus 419 ~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~ 496 (659)
T PLN03211 419 AALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELI 496 (659)
T ss_pred HHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999985 6889999999999998877665 577899999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCcc
Q 006548 542 ISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGP 621 (641)
Q Consensus 542 ~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~ 621 (641)
.+++|++|+|||+||++++.+|++|+++++++.++++++|+++++++||+.+|+.+++++++++++|+||+++ +||+
T Consensus 497 ~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~- 573 (659)
T PLN03211 497 LPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPS- 573 (659)
T ss_pred HHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 7985
Q ss_pred ccccccccccHHHHHhhhc
Q 006548 622 VWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 622 ~W~~w~~yis~~~Ya~e~~ 640 (641)
|+.|++|+||++|||||+
T Consensus 574 -~~~W~~ylS~~~y~~eal 591 (659)
T PLN03211 574 -CMAWIKYISTTFYSYRLL 591 (659)
T ss_pred -HHHHHHHhCHHHHHHHHH
Confidence 445699999999999997
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-93 Score=817.15 Aligned_cols=500 Identities=25% Similarity=0.409 Sum_probs=441.5
Q ss_pred cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEEEEcCCCccCCCCC
Q 006548 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLT 198 (641)
Q Consensus 121 ~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lT 198 (641)
.++.+|+|+|+++++||++||+|||||||||||++|+|+.+++...+|+|.+||.+... .++.++||+|++.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 35779999999999999999999999999999999999988753457999999987532 2356899999999999999
Q ss_pred HHHHHHHHHHhcCCCcc--chHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCC
Q 006548 199 VREYLYYSALLQLPGFF--CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (641)
Q Consensus 199 V~E~l~~~~~~~~~~~~--~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPts 276 (641)
|+|||.|++.++.+... .+++++++++++.+||.+++|+.+|.....++|||||||||+||+||+.+|++|||||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988766432 2355679999999999999999998322467999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHhhhcCCCCCCCCCchHHH
Q 006548 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHF 356 (641)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~ 356 (641)
|||+.++..+++.|++++++|+|+|+++|||+.+++++||++++|++|+++++|+++++.+||+++|++||...||+|++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 99999999999999999988999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhcCHHHHHHHHHHHhhhhcc-----C--CCcCCCCCC
Q 006548 357 LRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKE-----G--PFLKSKGKA 429 (641)
Q Consensus 357 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~ 429 (641)
++.++.+.+. +....+..+++.+.|+.++.+.+..+........+ . .....++..
T Consensus 276 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (617)
T TIGR00955 276 VQVLAVIPGS------------------ENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNA 337 (617)
T ss_pred HHHhhcCccc------------------ccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCC
Confidence 9877643211 01112344567777777766555443332111110 0 011235678
Q ss_pred CHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHh
Q 006548 430 SSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNI-AGVPALMK 508 (641)
Q Consensus 430 s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l~~~~~~~~~r~g~lff~~~~~~~~~~-~~v~~~~~ 508 (641)
+|++|+++|++|++++++|||.++.+|+++++++|+++|++||+++++++++++|.|++|+++++.+|.++ ..++.|+.
T Consensus 338 ~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~ 417 (617)
T TIGR00955 338 SWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTA 417 (617)
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998875 56789999
Q ss_pred hHhHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006548 509 EIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIW 588 (641)
Q Consensus 509 er~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~sl~~~i~~~~ 588 (641)
||.+|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+|++|+++++++.++++++++++++++
T Consensus 418 er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~ 497 (617)
T TIGR00955 418 ELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAF 497 (617)
T ss_pred HHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 589 KDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 589 ~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
||..+|..+++++++++++|+||++++++||+ |+.|++|+||++||+||+
T Consensus 498 ~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~--~~~W~~~isp~~ya~~al 547 (617)
T TIGR00955 498 SSTSMALTVGPPFVIPFLLFGGFFINSDSIPV--YFKWLSYLSWFRYGNEGL 547 (617)
T ss_pred CchHHHHHHHHHHHHHHHHHhhcccChhhccH--HHHHHHHcCHHHHHHHHH
Confidence 99999999999999999999999999999995 445799999999999997
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-94 Score=834.48 Aligned_cols=509 Identities=27% Similarity=0.421 Sum_probs=460.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-C-CC
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-M-PY 181 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~-~-~~ 181 (641)
....|+|++++++.+. +++++|+||++.++||.++||||+||||||||||+|+|+...+ .++|+|++||.+.. . -.
T Consensus 786 ~V~~w~dl~~~~~~qG-~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~ 863 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPIQG-GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFA 863 (1391)
T ss_pred ceEEEEeCCccccccc-cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhc
Confidence 3578999999986543 6788999999999999999999999999999999999997654 58999999999865 2 34
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccch--HHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ--RKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~--~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
+.+|||.|+|.|.+.+||+|.|.|+|.+|+|...+. +.+.|+++++.++|++++|.+|| ..- .|||.+||||++||
T Consensus 864 R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG-~~G-~GLs~eQRKrLTIg 941 (1391)
T KOG0065|consen 864 RVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVG-LPG-SGLSTEQRKRLTIG 941 (1391)
T ss_pred cccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhcc-CCC-CCCCHHHhceeeEE
Confidence 679999999999999999999999999999876543 55789999999999999999998 544 89999999999999
Q ss_pred HHHHhCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe-CCeEEEEeChhH---
Q 006548 260 RELVMRP-HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS-NGNTLFFGETLA--- 334 (641)
Q Consensus 260 ~aL~~~P-~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~-~G~iv~~G~~~~--- 334 (641)
.+|+.+| .||||||||||||+.++..|++.+|++++.|+||+||||||+..+++.||++++|+ +|++||.|+..+
T Consensus 942 VELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~ 1021 (1391)
T KOG0065|consen 942 VELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSS 1021 (1391)
T ss_pred EEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccH
Confidence 9999999 89999999999999999999999999999999999999999999999999999997 689999999754
Q ss_pred -HHHHhhhc-CCCCCCCCCchHHHHHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhcCHHHHHHHHHH
Q 006548 335 -CLQHFSNA-GFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412 (641)
Q Consensus 335 -~~~~f~~~-g~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~ 412 (641)
+++||+++ |.+||...||||+++++++..... ..-.++.+.|++|++++++.+.+
T Consensus 1022 ~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~-----------------------~~~~D~a~~w~~S~e~k~~~e~v 1078 (1391)
T KOG0065|consen 1022 KLIEYFESIGGVKCISDENPAEWMLEVIGAGAEA-----------------------SLSVDFAEIWKNSEEYKRNKELV 1078 (1391)
T ss_pred HHHHHHHhcCCccCCCCCChHHHHHhhccccccc-----------------------ccCccHHHHHhccHHHHHHHHHH
Confidence 56799999 589999999999999988754211 00115788999999999998888
Q ss_pred HhhhhccC-----CCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 006548 413 LRLTEKEG-----PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAA 487 (641)
Q Consensus 413 ~~~~~~~~-----~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l~~~~~~~~~r~g~ 487 (641)
+++.+... ...++++++|+|.|++.++||++..+||+|.|+++|++++++.||++|+.||++|++.+++||.+|+
T Consensus 1079 ~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a 1158 (1391)
T KOG0065|consen 1079 KELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGA 1158 (1391)
T ss_pred HHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHH
Confidence 76543221 1234569999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhH-HHHHhhHhHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHH
Q 006548 488 IFVFVSFNSLLNIAGV-PALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYF 566 (641)
Q Consensus 488 lff~~~~~~~~~~~~v-~~~~~er~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f 566 (641)
+|+++++......+.. +....||.+++||+.+|+||+.+|++|++++|+|+.++++++|.+|.|+|+||.+++.+|++|
T Consensus 1159 ~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f 1238 (1391)
T KOG0065|consen 1159 AYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWF 1238 (1391)
T ss_pred HHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHH
Confidence 9999998887776655 556678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhcC
Q 006548 567 VLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKACI 641 (641)
Q Consensus 567 ~l~l~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~~ 641 (641)
++.++++.++.+++|+++.+++||.++|.++.+.++.++.+|+|++++++.||+ +|. ||||+||+.|-+|++|
T Consensus 1239 ~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~-fW~-wmy~lsP~ty~l~gli 1311 (1391)
T KOG0065|consen 1239 LLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPK-FWI-WMYYLSPVTYTLEGLI 1311 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccc-eee-eeeecCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997 576 5999999999999985
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-92 Score=861.29 Aligned_cols=512 Identities=21% Similarity=0.362 Sum_probs=448.8
Q ss_pred CceEEEEeEEEEEeccc--------ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 006548 103 GASVVWKDLTVTIKGKR--------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~--------~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G 174 (641)
+..++|+||+|.++.+. ...+.+|+|||+.++|||++||+||||||||||||+|+|+.+++ ..+|+|.+||
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG 943 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISG 943 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECC
Confidence 45799999999996321 13457999999999999999999999999999999999997643 3579999999
Q ss_pred EeCCC--CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccc--hHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCH
Q 006548 175 AKSEM--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (641)
Q Consensus 175 ~~~~~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~--~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG 250 (641)
.+... .++.+|||+|++.+++.+||+|||.|++.++.+.... ++.++++++++.+||.+++|+.+| +..+++|||
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg-~~~~~~LSg 1022 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVG-LPGVTGLST 1022 (1470)
T ss_pred ccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccC-CCCCCCcCH
Confidence 86532 2356899999999999999999999998877654322 245679999999999999999987 556689999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC-CeEEEE
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTLFF 329 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~-G~iv~~ 329 (641)
||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++++
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 9999999999999999999999999999999999999999999988999999999998778999999999996 899999
Q ss_pred eCh----hHHHHHhhhc-CCC-CCCCCCchHHHHHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhcCH
Q 006548 330 GET----LACLQHFSNA-GFP-CPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSA 403 (641)
Q Consensus 330 G~~----~~~~~~f~~~-g~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ 403 (641)
|++ +++.+||+++ |++ ||+..||+||+++.++.+.+. . ...++.+.|+.|+
T Consensus 1103 G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~--------------------~---~~~d~~~~~~~s~ 1159 (1470)
T PLN03140 1103 GPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV--------------------K---LGIDFAEHYKSSS 1159 (1470)
T ss_pred CCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc--------------------c---ccchHHHHHhccH
Confidence 996 5789999997 675 999999999999887543110 0 0125778888888
Q ss_pred HHHHHHHHHHhhhhcc----CCCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCH-
Q 006548 404 DAAAVETMILRLTEKE----GPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSL- 478 (641)
Q Consensus 404 ~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l~~~~- 478 (641)
.+++..+.+.+..... .....++++.|+|+|+++|++|+++++||||.++++|+++++++|+++|++||++++++
T Consensus 1160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~ 1239 (1470)
T PLN03140 1160 LYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRS 1239 (1470)
T ss_pred HHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcc
Confidence 8777665554332211 11123568999999999999999999999999999999999999999999999999765
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHh-hHHHHHhhHhHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Q 006548 479 --SSVVTRVAAIFVFVSFNSLLNIA-GVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVG 555 (641)
Q Consensus 479 --~~~~~r~g~lff~~~~~~~~~~~-~v~~~~~er~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~G 555 (641)
+++++|.|++|+++++.++.++. .+|.|..||++|+|||++|+|++.+|++|++++|+|+.++.+++|++|+|||+|
T Consensus 1240 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~G 1319 (1470)
T PLN03140 1240 NANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVA 1319 (1470)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 57888999999999998887765 469999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHH
Q 006548 556 LRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTY 635 (641)
Q Consensus 556 l~~~~~~F~~f~l~l~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Y 635 (641)
|++++.+||+|+++++++.++++++|+++++++||..+|..+++++++++++|+||++++++||. +|. |++|+||++|
T Consensus 1320 l~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~-~~~-W~~~isp~~y 1397 (1470)
T PLN03140 1320 FEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPK-WWV-WYYWICPVAW 1397 (1470)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCch-HHH-HHHHcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999996 455 6999999999
Q ss_pred HhhhcC
Q 006548 636 SIKACI 641 (641)
Q Consensus 636 a~e~~~ 641 (641)
++||+.
T Consensus 1398 ~~~~l~ 1403 (1470)
T PLN03140 1398 TVYGLI 1403 (1470)
T ss_pred HHhhhH
Confidence 999973
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-92 Score=860.62 Aligned_cols=503 Identities=22% Similarity=0.342 Sum_probs=439.9
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCCC----CCceEEEEcCCCccCCC
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKSEM----PYGSYGFVERETTLIGS 196 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~-~~~~G~I~~~G~~~~~----~~~~~~yv~Q~~~l~~~ 196 (641)
.+++|+|+|+.+++||+++|+||||||||||||+|+|+.++. ...+|+|.+||++... .++.++||+|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 457999999999999999999999999999999999997421 1246999999987521 23469999999999999
Q ss_pred CCHHHHHHHHHHhcCCCc----cc--hHHHH-HHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEE
Q 006548 197 LTVREYLYYSALLQLPGF----FC--QRKNV-VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVL 269 (641)
Q Consensus 197 lTV~E~l~~~~~~~~~~~----~~--~~~~~-v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iL 269 (641)
+||+|||.|++.++.+.. .. +..++ ++++++.+||.+++|+.+| +..+++|||||||||+||++|+.+|+||
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg-~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVG-NDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeC-CCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999988765421 11 12223 4678999999999999997 7889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHhhhcCCCCCC
Q 006548 270 FIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPI 348 (641)
Q Consensus 270 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~ 348 (641)
||||||+|||+.++..+++.|++++++ |+|+|+++|||.++++++||+|++|++|+++++|+++++.+||+++|++||+
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~ 311 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPD 311 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999965 9999999999988999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhcCHHHHHHHHHHHhhhhc----------
Q 006548 349 MQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEK---------- 418 (641)
Q Consensus 349 ~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~---------- 418 (641)
+.||+|++++..+.+. +. ........ .. ...+++++.|+.|+.++++.+.++...+.
T Consensus 312 ~~n~aDfl~~~~~~~~-~~--~~~~~e~~------~~----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1394)
T TIGR00956 312 RQTTADFLTSLTSPAE-RQ--IKPGYEKK------VP----RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAY 378 (1394)
T ss_pred CCChHHHHHhccChhh-hh--cccccccc------CC----CCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHH
Confidence 9999998887765431 11 11111110 01 12356888898888776655544321110
Q ss_pred ---------cCCCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006548 419 ---------EGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIF 489 (641)
Q Consensus 419 ---------~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l~~~~~~~~~r~g~lf 489 (641)
......+.+..|+|+|+++|++|++++++|||.++++|+++++++|+++|++||+++++++++++|.|++|
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf 458 (1394)
T TIGR00956 379 RESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALF 458 (1394)
T ss_pred HHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Confidence 00111235788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHhhHhHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHH
Q 006548 490 VFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLN 569 (641)
Q Consensus 490 f~~~~~~~~~~~~v~~~~~er~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~ 569 (641)
|++++.+|+++..++.++.||++|+||+++++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++
T Consensus 459 ~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~ 538 (1394)
T TIGR00956 459 FAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLI 538 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 570 FFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 570 l~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
++++.++++++++++++++||+.+|+.+++++++++++|+||++++++||. |+.|++||||++|||||+
T Consensus 539 ~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~--~~~W~~yisp~~yafeal 607 (1394)
T TIGR00956 539 LFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLG--WSKWIYYVNPLAYAFESL 607 (1394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccH--HHHHHHHcCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999995 556799999999999997
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-90 Score=845.62 Aligned_cols=506 Identities=22% Similarity=0.365 Sum_probs=439.2
Q ss_pred cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEEEEcCCCccCCCCC
Q 006548 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLT 198 (641)
Q Consensus 121 ~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lT 198 (641)
.++.||+|+|+.++|||+++|+||||||||||||+|+|+++++...+|+|.+||++... .++.++||+|++.+++.+|
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 34679999999999999999999999999999999999998864457999999987532 2467999999999999999
Q ss_pred HHHHHHHHHHhcCCCc-------c--chH------------------------HHHHHHHHHHcCCchHHhhhhcCCCCC
Q 006548 199 VREYLYYSALLQLPGF-------F--CQR------------------------KNVVEDAIHAMSLSDYANKLIGGHCYM 245 (641)
Q Consensus 199 V~E~l~~~~~~~~~~~-------~--~~~------------------------~~~v~~~l~~lgL~~~~~~~ig~~~~~ 245 (641)
|+|||.|++.++.+.. . .++ +..++++++.+||.+++|+.+| +..+
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg-~~~~ 334 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVG-DEMI 334 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeC-Cccc
Confidence 9999999987653211 0 000 0135779999999999999997 8889
Q ss_pred CCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 006548 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (641)
++|||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++ .|+|+|+++|||..+++++||+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 99999999999999999999999999999999999999999999999986 58999999999988999999999999999
Q ss_pred eEEEEeChhHHHHHhhhcCCCCCCCCCchHHHHHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhcCHH
Q 006548 325 NTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSAD 404 (641)
Q Consensus 325 ~iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~ 404 (641)
+++|+|+++++.+||+++|++||++.||+|++++.++.+..+ +.|... +. +. .....+++.+.|+++..
T Consensus 415 ~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~-----~~~~~~--~~---p~-~~~~~~~~~~~~~~s~~ 483 (1470)
T PLN03140 415 QIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQE-----QYWADR--NK---PY-RYISVSEFAERFKSFHV 483 (1470)
T ss_pred eEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhh-----hhhhcc--CC---cc-ccCCHHHHHHHHHhcHH
Confidence 999999999999999999999999999999888776543111 111110 00 00 00123568889999988
Q ss_pred HHHHHHHHHhhhhc----cCCCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCH--
Q 006548 405 AAAVETMILRLTEK----EGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSL-- 478 (641)
Q Consensus 405 ~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l~~~~-- 478 (641)
++++.+++....++ ......+++..+++.|++.|++|++++++||+.++..|+++.+++|+++|++||+++.++
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~ 563 (1470)
T PLN03140 484 GMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRN 563 (1470)
T ss_pred HHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 77666554432111 111122468899999999999999999999999999999999999999999999997543
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHhHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccc
Q 006548 479 -SSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLR 557 (641)
Q Consensus 479 -~~~~~r~g~lff~~~~~~~~~~~~v~~~~~er~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~ 557 (641)
.+.+.+.|++||++++.+|.+++.++.++.||+||+|||++++|++++|++|++++|+|+.++.+++|++|+|||+||+
T Consensus 564 ~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~ 643 (1470)
T PLN03140 564 EEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFA 643 (1470)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCC
Confidence 4567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHh
Q 006548 558 DEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSI 637 (641)
Q Consensus 558 ~~~~~F~~f~l~l~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~ 637 (641)
+++++||+|+++++++.++++++++++++++|++.+|+.+++++++++++|+||++++++||+ |+.|++||||++|||
T Consensus 644 ~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~--w~~W~~yisp~~Ya~ 721 (1470)
T PLN03140 644 PEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPN--WWEWAYWVSPLSYGF 721 (1470)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCch--HHHHHHHhCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999995 555699999999999
Q ss_pred hhc
Q 006548 638 KAC 640 (641)
Q Consensus 638 e~~ 640 (641)
||+
T Consensus 722 eal 724 (1470)
T PLN03140 722 NAL 724 (1470)
T ss_pred HHH
Confidence 997
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-89 Score=839.49 Aligned_cols=508 Identities=27% Similarity=0.414 Sum_probs=444.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCce
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGS 183 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-~~~~ 183 (641)
.++|+||+++++.+ +..+.+|+|||+.+++||++||+||||||||||||+|+|+.+++...+|+|.+||++... .++.
T Consensus 759 ~l~~~nl~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 759 IFHWRNLTYEVKIK-KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred eEEEEeeEEEecCC-CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 58999999998532 234679999999999999999999999999999999999987432245999999988632 2457
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccc--hHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~--~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
++||+|++.+++.+||+|||.|++.++.+.... +++++++++++.+||.+++|+.++ . ...+|||||||||+||+|
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~-~-~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVG-V-PGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeC-C-CCCCCCHHHhhHHHHHHH
Confidence 999999999999999999999998877654322 245679999999999999999886 2 234899999999999999
Q ss_pred HHhCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCC-eEEEEeCh----hHH
Q 006548 262 LVMRPH-VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG-NTLFFGET----LAC 335 (641)
Q Consensus 262 L~~~P~-iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G-~iv~~G~~----~~~ 335 (641)
|+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||...+++.||++++|++| +++++|++ +++
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~ 995 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTI 995 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchH
Confidence 999997 999999999999999999999999999889999999999987778899999999987 99999997 568
Q ss_pred HHHhhhcCC-CCCCCCCchHHHHHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 006548 336 LQHFSNAGF-PCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILR 414 (641)
Q Consensus 336 ~~~f~~~g~-~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~ 414 (641)
.+||++.|+ +||...||+|++++.++.+... ...+++.+.|+.|...+++.+.++.
T Consensus 996 ~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~-----------------------~~~~~~~~~~~~s~~~~~~~~~~~~ 1052 (1394)
T TIGR00956 996 INYFEKHGAPKCPEDANPAEWMLEVIGAAPGA-----------------------HANQDYHEVWRNSSEYQAVKNELDR 1052 (1394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHhhccccc-----------------------chhccHHHHHhcCHHHHHHHHHHHH
Confidence 899999996 9999999999999987643110 0012456677777776665554433
Q ss_pred hhhcc----C---CCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 006548 415 LTEKE----G---PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAA 487 (641)
Q Consensus 415 ~~~~~----~---~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l~~~~~~~~~r~g~ 487 (641)
..... . .....++++||++|+++|++|+++++||||.++++|+++++++|+++|++||++++++.+++||+|+
T Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~ 1132 (1394)
T TIGR00956 1053 LEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFA 1132 (1394)
T ss_pred hhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 22110 0 0112468899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhHhHH-HhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHH----
Q 006548 488 IFVFVSFNSLLNIAGVPALMKEIKTY-ASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSL---- 562 (641)
Q Consensus 488 lff~~~~~~~~~~~~v~~~~~er~vf-~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~---- 562 (641)
+|+++.+..+.....+|.|+.||.+| +||+.+|+|++.+|++|++++|+|+.++.+++|.+|+|||+||++++..
T Consensus 1133 ~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~ 1212 (1394)
T TIGR00956 1133 VFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQV 1212 (1394)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccc
Confidence 99999888887777889999999885 9999999999999999999999999999999999999999999998876
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhh
Q 006548 563 ---LMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKA 639 (641)
Q Consensus 563 ---F~~f~l~l~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~ 639 (641)
|++|+++++++.++++++|+++++++||..+|..+++++++++++|+||++++++||. +|. |++|+||++|++||
T Consensus 1213 ~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~-~~~-w~~~~sp~~y~~~~ 1290 (1394)
T TIGR00956 1213 HERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPG-FWI-FMYRCSPFTYLVQA 1290 (1394)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcH-HHh-HHHhcCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999996 566 59999999999999
Q ss_pred c
Q 006548 640 C 640 (641)
Q Consensus 640 ~ 640 (641)
+
T Consensus 1291 l 1291 (1394)
T TIGR00956 1291 L 1291 (1394)
T ss_pred H
Confidence 7
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-81 Score=726.64 Aligned_cols=505 Identities=26% Similarity=0.427 Sum_probs=451.9
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEEEEcCCCccCCCCCH
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLTV 199 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lTV 199 (641)
...+|+|+|+.++||+++.++||+||||||||++|+|-++......|+|.+||.+.+. .++.++|+.|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 4579999999999999999999999999999999999987665567999999987432 35679999999999999999
Q ss_pred HHHHHHHHHhcCCCccc---hHHH----HHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEe
Q 006548 200 REYLYYSALLQLPGFFC---QRKN----VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272 (641)
Q Consensus 200 ~E~l~~~~~~~~~~~~~---~~~~----~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLD 272 (641)
+|+|.|+++++.+...- .+++ ..+.+++.+||++|+|+++| |+.+||+||||||||++|.+++.+++++++|
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VG-nd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVG-NDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceec-ccccccccCcccceeeeeeeeecCcceeeee
Confidence 99999999998774321 1222 56789999999999999998 9999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHhhhcCCCCCCCCC
Q 006548 273 EPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQS 351 (641)
Q Consensus 273 EPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~ 351 (641)
|+|+|||+.++.++++.||++++. +.|++++++||+++++++||+|++|.+|+++|+||.+++++||+++|+.||++.+
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~ 365 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKG 365 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccC
Confidence 999999999999999999999854 8999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhcCHHHHHHHHHHHhhhhcc----CCCcCCCC
Q 006548 352 PSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKE----GPFLKSKG 427 (641)
Q Consensus 352 ~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~----~~~~~~~~ 427 (641)
++|++.+..+. .++ .+.|..++. .-......++.+.|.+++.++++...+....++. .....++|
T Consensus 366 ~ADfLt~vts~-k~~----~~~~~~~~~------~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y 434 (1391)
T KOG0065|consen 366 TADFLTEVTSK-KDQ----EQYWNKRSK------PYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKY 434 (1391)
T ss_pred HHHHHHHhhcC-ccc----cccccccCC------CcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCce
Confidence 99977665541 111 112221110 0111123579999999999998887776543321 12234679
Q ss_pred CCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 006548 428 KASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLG-HSLSSVVTRVAAIFVFVSFNSLLNIAGVPAL 506 (641)
Q Consensus 428 ~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l~-~~~~~~~~r~g~lff~~~~~~~~~~~~v~~~ 506 (641)
..++|.|++.|+.|.|+.+.||..++..++++.+++|+++|++|++.+ .+..+...|+|++||++++.+|+++++++..
T Consensus 435 ~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~ 514 (1391)
T KOG0065|consen 435 SVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALT 514 (1391)
T ss_pred eccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 8888899999999999999999999999999
Q ss_pred HhhHhHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006548 507 MKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVAS 586 (641)
Q Consensus 507 ~~er~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~sl~~~i~~ 586 (641)
++.|+||+|||...+|++++|.++.+++++|+.++.+++|.+|+||++||++++++||+|+++++++.+|+.++++++++
T Consensus 515 ~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~ 594 (1391)
T KOG0065|consen 515 FQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIAS 594 (1391)
T ss_pred HhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 587 IWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 587 ~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
+++++..|+.++++.++.+.+++||+|+.+.||+ |+.|++||||+.||+|++
T Consensus 595 l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~--W~~Wi~yinPl~Y~fesl 646 (1391)
T KOG0065|consen 595 LSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPP--WFRWIAYINPLMYAFESL 646 (1391)
T ss_pred hcchHHHHhhHhHHHHHHHHHHcceeeeccccch--HHHHHHHHCHHHHHHHHH
Confidence 9999999999999999999999999999999995 777899999999999986
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-53 Score=406.71 Aligned_cols=218 Identities=26% Similarity=0.348 Sum_probs=194.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.| +...+|+|||+++++||+++|+||||||||||||||+|+.++++ |+|.++|.+...
T Consensus 2 mi~i~~l~K~f-----g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~---G~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 2 MIEIKNLSKSF-----GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITVDGEDVGDKKDIL 73 (240)
T ss_pred eEEEEeeeEEe-----CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCC---ceEEECCEeccchhhHH
Confidence 58999999999 45689999999999999999999999999999999999999986 999999975421
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.++.+|+|+|+..|||++||.||+.++...-......+.+++..++|+.+||.+.+|. ||.+|||||||||+|
T Consensus 74 ~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~------yP~qLSGGQqQRVAI 147 (240)
T COG1126 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADA------YPAQLSGGQQQRVAI 147 (240)
T ss_pred HHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhh------CccccCcHHHHHHHH
Confidence 2357999999999999999999999876543322223456678899999999998887 566999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||||+.+|+++++|||||+|||....++++.+++|+++|.|.|++||.. ..+.+.+|||++|++|+++..|++++.+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~~f~ 225 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEEFFD 225 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999999999999998886 58999999999999999999999887653
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-50 Score=404.93 Aligned_cols=221 Identities=25% Similarity=0.308 Sum_probs=197.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|..++.....+|+|||++|++||+++|+|.||||||||+|+|.++..|++ |+|.++|.+...
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pts---G~v~v~G~di~~l~~~~L 78 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS---GSVFVDGQDLTALSEAEL 78 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCC---ceEEEcCEecccCChHHH
Confidence 78999999997543334679999999999999999999999999999999999999986 999999977431
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.++++|+++|+..|+...||.||+.|+..+.. ....+.++++.++|+.+||.+.+++ ||.+|||||||||+
T Consensus 79 r~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag-~~k~ei~~RV~elLelVgL~dk~~~------yP~qLSGGQKQRVa 151 (339)
T COG1135 79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG-VPKAEIKQRVAELLELVGLSDKADR------YPAQLSGGQKQRVA 151 (339)
T ss_pred HHHHhhccEEeccccccccchHHhhhhhhHhhcC-CCHHHHHHHHHHHHHHcCChhhhcc------CchhcCcchhhHHH
Confidence 24679999999999999999999999987653 1233578899999999999988876 56699999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|+||++|||||+|||.+...|+++|+++.++ |.||++++|++ +.+.++||||.+|++|++++.|+..+++
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999999999855 99999988886 6899999999999999999999998876
Q ss_pred H
Q 006548 337 Q 337 (641)
Q Consensus 337 ~ 337 (641)
.
T Consensus 231 ~ 231 (339)
T COG1135 231 A 231 (339)
T ss_pred c
Confidence 4
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=389.22 Aligned_cols=226 Identities=25% Similarity=0.422 Sum_probs=200.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 180 (641)
++++||++.|. .+++++|+|++|++||+++++|||||||||+||+|.+++.|++ |+|++||+++.. .
T Consensus 2 I~~~nvsk~y~-----~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~---G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 2 IEFENVSKRYG-----NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS---GEILIDGEDISDLDPVEL 73 (309)
T ss_pred ceeeeeehhcC-----CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCC---ceEEECCeecccCCHHHH
Confidence 68999999994 5689999999999999999999999999999999999999986 999999998643 2
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc--hHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
++++|||-|+..|||++||.||+.+-..+..- ...+.+++++|+|+.+||+ +++++ +|++|||||+|||.+
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w-~k~~i~~r~~ELl~lvgL~p~~~~~R------yP~eLSGGQQQRVGv 146 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGW-DKERIKKRADELLDLVGLDPSEYADR------YPHELSGGQQQRVGV 146 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhcCC-CHHHHHHHHHHHHHHhCCCHHHHhhc------CchhcCcchhhHHHH
Confidence 46799999999999999999999887655422 2234678899999999996 46766 677999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||||+.+|+||+||||+++|||.++.++-+.++++.++ |+|||++||+. +|+.+++|||++|++|+++.+++|++++.
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999866 99999988876 68999999999999999999999998864
Q ss_pred HhhhcCCCCCCCCCchHHHHHHH
Q 006548 338 HFSNAGFPCPIMQSPSDHFLRAI 360 (641)
Q Consensus 338 ~f~~~g~~~~~~~~~~d~~l~~~ 360 (641)
||++.|+..+
T Consensus 226 -------------~Pan~FV~~f 235 (309)
T COG1125 226 -------------NPANDFVEDF 235 (309)
T ss_pred -------------CccHHHHHHH
Confidence 5777777654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-49 Score=397.91 Aligned_cols=217 Identities=27% Similarity=0.401 Sum_probs=192.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|. ++.+|+|+|+++++||+++|+||||||||||||+|+|+++|.+ |+|.++|+++..
T Consensus 2 ~L~~~~ls~~y~-----~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~---G~V~l~g~~i~~~~~ke 73 (258)
T COG1120 2 MLEVENLSFGYG-----GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKS---GEVLLDGKDIASLSPKE 73 (258)
T ss_pred eeEEEEEEEEEC-----CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCC---CEEEECCCchhhcCHHH
Confidence 588999999994 5689999999999999999999999999999999999999975 999999987542
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCc--cc-hHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF--FC-QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~--~~-~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
..+.++||||.......+||+|.+.++..-+.... .+ ++.+.++++|+.+|+.+++++.+. +|||||||||
T Consensus 74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~------~LSGGerQrv 147 (258)
T COG1120 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD------ELSGGERQRV 147 (258)
T ss_pred HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc------ccChhHHHHH
Confidence 23579999999988889999999987643211111 11 244579999999999999999765 9999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
.|||||+++|++|+||||||+||..++.++++++++++ ++|.|||+++|++. .+.++||++++|++|++++.|+|+++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchh
Confidence 99999999999999999999999999999999999999 55999999999885 78999999999999999999999887
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
+
T Consensus 227 l 227 (258)
T COG1120 227 L 227 (258)
T ss_pred c
Confidence 6
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=387.73 Aligned_cols=204 Identities=30% Similarity=0.410 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.+.++++++.|. ...+|+|+|+++.+||+++|+||||||||||||+|+|+.+|++ |+|.++|.+...+...+
T Consensus 3 ~l~i~~v~~~f~-----~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~---G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFG-----GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS---GEVLLDGRPVTGPGPDI 74 (248)
T ss_pred eEEEEeeEEEeC-----ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCcccCCCCCCE
Confidence 578999999994 3689999999999999999999999999999999999999986 99999999876666789
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHh
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (641)
+||+|++.|+|.+||.||+.++..... ....+.+++++++|+.+||.++.++ +|++|||||||||+|||||+.
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~-~~~~e~~~~a~~~L~~VgL~~~~~~------~P~qLSGGMrQRVaiARAL~~ 147 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRG-KSKAEARERAKELLELVGLAGFEDK------YPHQLSGGMRQRVAIARALAT 147 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccc-cchHhHHHHHHHHHHHcCCcchhhc------CccccChHHHHHHHHHHHHhc
Confidence 999999999999999999999877653 1122355689999999999999987 567999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 006548 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (641)
Q Consensus 265 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (641)
+|+||+||||+++||+.++..+.+.|.++. ++++||+++||+. +|+..++|||++|.++
T Consensus 148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 999999999999999999999999999987 5589999988887 5888999999999984
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=380.35 Aligned_cols=219 Identities=25% Similarity=0.360 Sum_probs=193.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..+++++|++++ +.+.|++|||+.|++||+++||||||||||||||+|.|+++|++ |+|+++|+++..
T Consensus 7 ~~I~vr~v~~~f-----G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~---GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 7 PLIEVRGVTKSF-----GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDK---GEILIDGEDIPQLSEE 78 (263)
T ss_pred ceEEEeeeeeec-----CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCC---CeEEEcCcchhccCHH
Confidence 468999999998 46789999999999999999999999999999999999999986 999999987532
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchH-HhhhhcCCCCCCCCCHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerq 254 (641)
.++++|+++|+..||..+||.||+.|..+-+........++.+..-|+.+||... ++. +|.+|||||+|
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~------~PsELSGGM~K 152 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADL------YPSELSGGMRK 152 (263)
T ss_pred HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhh------CchhhcchHHH
Confidence 1357999999999999999999999976543222222356677788999999876 655 56799999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
|++|||||+.+|+|||+||||+||||.++..+.+++++|++. |.|+++++|+. ++++.+|||+++|.+|+|+.+|+++
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt~~ 231 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGTPE 231 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCCHH
Confidence 999999999999999999999999999999999999999966 99999988887 5899999999999999999999999
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
++.+
T Consensus 232 el~~ 235 (263)
T COG1127 232 ELLA 235 (263)
T ss_pred HHHh
Confidence 8864
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-48 Score=402.57 Aligned_cols=221 Identities=29% Similarity=0.415 Sum_probs=196.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~ 180 (641)
.+.++||++.|.. .+.+|+||||++++||++||+||||||||||+|+|+|+.+|++ |+|.++|.+... .
T Consensus 4 ~i~~~~l~k~~~~----~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~---G~i~i~G~~~~~~~~~~ 76 (293)
T COG1131 4 VIEVRNLTKKYGG----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS---GEILVLGYDVVKEPAKV 76 (293)
T ss_pred eeeecceEEEeCC----CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEEcCEeCccCHHHH
Confidence 5788999999841 4689999999999999999999999999999999999999975 999999987543 2
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
++++||++|++.+++.+||+|||.|.+.++.... ...+++++++++.+||.+..++++ ++||+||||||+||+
T Consensus 77 ~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~------~~lS~G~kqrl~ia~ 149 (293)
T COG1131 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK-EEAEERIEELLELFGLEDKANKKV------RTLSGGMKQRLSIAL 149 (293)
T ss_pred HhheEEEccCCCCCccccHHHHHHHHHHHhCCCh-hHHHHHHHHHHHHcCCchhhCcch------hhcCHHHHHHHHHHH
Confidence 3579999999999999999999999988875432 235678999999999998666555 499999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHh
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (641)
||+.+|++|||||||+|||+.++..+.+.|++++++| +||++++|++ +++..+||+|++|++|+++++|+++++...+
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~ 228 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKEKF 228 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHHhh
Confidence 9999999999999999999999999999999999887 7999988887 5899999999999999999999998876655
Q ss_pred h
Q 006548 340 S 340 (641)
Q Consensus 340 ~ 340 (641)
.
T Consensus 229 ~ 229 (293)
T COG1131 229 G 229 (293)
T ss_pred c
Confidence 4
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=380.73 Aligned_cols=209 Identities=29% Similarity=0.380 Sum_probs=181.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|..+.. ...+|+++|+++++||+++|+|||||||||||++|.|+..|++ |+|.++|.+...
T Consensus 2 i~~~~v~k~y~~~~~-~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~---G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 2 IELKNVSKIYGLGGE-KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTS---GEVLINGKDLTKLSEKEL 77 (226)
T ss_pred cEEeeeEEEeccCCc-ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---ceEEECCEEcCcCCHHHH
Confidence 568999998864432 2679999999999999999999999999999999999999975 999999976431
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
+++.+|||+|+..|+|.+||+||+.+++.+...... ..+++++++++.+||.+..++ .+|.+|||||||||
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~-~~~~~~~~l~~~lgl~~~~~~-----~~p~eLSGGqqQRV 151 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG-RRKRAAEELLEVLGLEDRLLK-----KKPSELSGGQQQRV 151 (226)
T ss_pred HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChh-HHHHHHHHHHHhcCChhhhcc-----CCchhcCHHHHHHH
Confidence 235799999999999999999999988765432211 356778999999999877762 24569999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
+|||||+.+|++|++||||.+||+.++..|+++|++++++ |+|+|++||++ ++...|||++.|++|++
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999999999865 99999999987 67889999999999994
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=407.23 Aligned_cols=219 Identities=26% Similarity=0.395 Sum_probs=197.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~ 180 (641)
..++++||++.|. ...+|+|+|+.|++||+++|+||||||||||||+|||+..|++ |+|.++|+++.. .
T Consensus 4 ~~l~i~~v~k~yg-----~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~---G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 4 PALEIRNVSKSFG-----DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS---GEILLDGEDITDVPPE 75 (352)
T ss_pred ceEEEEeeeeecC-----CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCChh
Confidence 4689999999993 5689999999999999999999999999999999999999986 999999998642 3
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
++.+|+|+|+..|||+|||+||+.|+.+++......+.+++++++++.++|.++.++++ .+|||||||||+|||
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p------~qLSGGQqQRVALAR 149 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP------HQLSGGQQQRVALAR 149 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh------hhhChHHHHHHHHHH
Confidence 57899999999999999999999999874432222236679999999999999998855 599999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||+.+|++|+||||.|+||..-+.++...|+++.++ |.|.|++||+. +|+..++|||++|++|+|...|+|+++..
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHHhh
Confidence 999999999999999999999999999999999854 99999998887 58999999999999999999999998854
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=400.16 Aligned_cols=218 Identities=28% Similarity=0.416 Sum_probs=196.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 181 (641)
.++++||++.|.+ ..+|+|+|++++.||+++|+||||||||||||+|||+.+|++ |+|.++|++... ..
T Consensus 3 ~i~l~~v~K~yg~-----~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~---G~I~i~g~~vt~l~P~~ 74 (338)
T COG3839 3 ELELKNVRKSFGS-----FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS---GEILIDGRDVTDLPPEK 74 (338)
T ss_pred EEEEeeeEEEcCC-----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCChhH
Confidence 5899999999842 129999999999999999999999999999999999999986 999999998643 24
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.+++|+|+..|+|+|||+||+.|+.+.+.- ...+.+++|+++.+.++|++++|+++ .+|||||||||+||||
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~-~k~ei~~rV~eva~~L~l~~lL~r~P------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGV-PKAEIDKRVKEVAKLLGLEHLLNRKP------LQLSGGQRQRVALARA 147 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhCCC-chHHHHHHHHHHHHHcCChhHHhcCc------ccCChhhHHHHHHHHH
Confidence 7899999999999999999999999876532 12346789999999999999999865 5999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (641)
|+++|++++||||+|+||...+..+...|+++.++ |.|+|.+||+. .|+..++|||++|++|++...|+|.++.++
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 99999999999999999999999999999999865 89999988887 589999999999999999999999998753
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=383.97 Aligned_cols=218 Identities=27% Similarity=0.399 Sum_probs=187.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--C
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--Y 181 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--~ 181 (641)
..++++|+++.|.+ . ++|+|||+.+++|++++|+||||||||||+|+|+|+++|.. |+|.++|++.... .
T Consensus 3 ~~i~v~nl~v~y~~----~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~---G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 3 PMIEVENLTVSYGN----R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS---GEIKIFGKPVRKRRKR 74 (254)
T ss_pred cEEEEeeeEEEECC----E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCc---ceEEEccccccccccC
Confidence 36899999999942 2 59999999999999999999999999999999999999975 9999999875433 3
Q ss_pred ceEEEEcCCCcc--CCCCCHHHHHHHHHHhcCC---CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 182 GSYGFVERETTL--IGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 182 ~~~~yv~Q~~~l--~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
.++|||||...+ -..+||+|.+..+...+.. ....++++.++++|+.+|+.+++++.++ +|||||+|||
T Consensus 75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~------~LSGGQ~QRV 148 (254)
T COG1121 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG------ELSGGQKQRV 148 (254)
T ss_pred CeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc------ccCcHHHHHH
Confidence 679999995432 2347999999876332211 1112346789999999999999999887 9999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
.|||||+.+|++|+|||||+|+|+.++..++++|++++++|+||++++|+. ..+.++||+|++|+ +++++.|+++++.
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL-~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL-GLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-HHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 999999999999999999999999999999999999998899999977776 58999999999995 6788999998876
Q ss_pred H
Q 006548 337 Q 337 (641)
Q Consensus 337 ~ 337 (641)
+
T Consensus 227 ~ 227 (254)
T COG1121 227 T 227 (254)
T ss_pred C
Confidence 4
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=387.41 Aligned_cols=219 Identities=27% Similarity=0.394 Sum_probs=195.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCCC--
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSEM-- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~---~~~~-- 179 (641)
.+.++|+++.+. ...+++|||+.|+.||++|++|||||||||||++|+|+..|+. |.|.+||+ +...
T Consensus 2 ~i~i~~~~~~~~-----~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~---G~I~~~~~~l~D~~~~~ 73 (345)
T COG1118 2 SIRINNVKKRFG-----AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA---GRIRLNGRVLFDVSNLA 73 (345)
T ss_pred ceeehhhhhhcc-----cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCC---ceEEECCEeccchhccc
Confidence 477888888773 4578999999999999999999999999999999999999986 99999998 4322
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
..+++|||+|+..+|++|||.||+.|+...+.. ....+.+.+++++|+.+.|+++.++ +|.+|||||||||+
T Consensus 74 ~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~r------yP~QLSGGQrQRVA 147 (345)
T COG1118 74 VRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR------YPAQLSGGQRQRVA 147 (345)
T ss_pred hhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhc------CchhcChHHHHHHH
Confidence 236899999999999999999999999876621 1122467889999999999999988 56699999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
+||||+.+|++|+||||+++||..-+.++.+.|+++.++ |.|+++++|++ +++.++||||++|++|+|...|+++++.
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 999999999999999999999999999999999999866 99999988887 6899999999999999999999999986
Q ss_pred HH
Q 006548 337 QH 338 (641)
Q Consensus 337 ~~ 338 (641)
+.
T Consensus 227 ~~ 228 (345)
T COG1118 227 DH 228 (345)
T ss_pred cC
Confidence 54
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=373.24 Aligned_cols=220 Identities=29% Similarity=0.392 Sum_probs=192.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++||++.|+ .++++|+|||+.+++||++||+||||||||||||+|+|+.+++. |+|.+||.++..
T Consensus 2 ~~i~~~nl~k~yp----~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~---G~i~~~g~~i~~~~~k 74 (258)
T COG3638 2 MMIEVKNLSKTYP----GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTS---GEILFNGVQITKLKGK 74 (258)
T ss_pred ceEEEeeeeeecC----CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCc---ceEEecccchhccchH
Confidence 3689999999996 35689999999999999999999999999999999999999875 999999976421
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC------cc-chHHHHHHHHHHHcCCchHHhhhhcCCCCCCCC
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPG------FF-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~------~~-~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~L 248 (641)
.++++||++|+..|.+.+||.+|+..+..-+.+. .. .+.+..+-++|+.+|+.+.+.++.+ .|
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~------~L 148 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS------TL 148 (258)
T ss_pred HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc------cC
Confidence 1357999999999999999999998764322211 11 2345667889999999999988776 99
Q ss_pred CHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 006548 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (641)
Q Consensus 249 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (641)
||||+|||+|||||+++|+||+.|||+++|||.+++.+|+.|++++ ++|.|+|++.|+. +.+.++||||+-|++|+++
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~iv 227 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGRIV 227 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCcEE
Confidence 9999999999999999999999999999999999999999999998 4599999999987 5889999999999999999
Q ss_pred EEeChhHHHH
Q 006548 328 FFGETLACLQ 337 (641)
Q Consensus 328 ~~G~~~~~~~ 337 (641)
|+|+++++-+
T Consensus 228 fDg~~~el~~ 237 (258)
T COG3638 228 FDGPASELTD 237 (258)
T ss_pred EeCChhhhhH
Confidence 9999988643
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=370.38 Aligned_cols=220 Identities=25% Similarity=0.345 Sum_probs=190.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
+.++++||++.|+.++ ....+|+|||+++++||+++|+|+||||||||.++|+|+.+|+. |+|.++|++...
T Consensus 2 ~~l~v~nl~~~y~~~~-~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~---G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 2 TLLSVRNLSIVYGGGK-FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS---GSILLDGKPLAPKKRA 77 (252)
T ss_pred ceEEEeceEEEecCCc-chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCC---ceEEECCcccCccccc
Confidence 3689999999996432 22369999999999999999999999999999999999999975 999999976432
Q ss_pred --CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 --PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 --~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerq 254 (641)
.++.+-+|+||+ .+.|..||++.|..+.... ...+.++++.++++.+||. +++++ +|++|||||||
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~~~~~~i~~~L~~VgL~~~~l~R------~P~eLSGGQ~Q 148 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSKSQQRIAELLDQVGLPPSFLDR------RPHELSGGQRQ 148 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccC---CccHHHHHHHHHHHHcCCCHHHHhc------CchhcChhHHH
Confidence 246789999986 6899999999998876542 1224455699999999995 56666 56699999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
|++|||||+.+|++||||||||+||+..+.+|+++|.+++++ |.|.|+++|+. ..+..+||||+||++|++++.+++.
T Consensus 149 RiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~~~ 227 (252)
T COG1124 149 RIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGPTE 227 (252)
T ss_pred HHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhheeeeeCCeEEEeechh
Confidence 999999999999999999999999999999999999999865 88999977765 6899999999999999999999998
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
++.+
T Consensus 228 ~l~~ 231 (252)
T COG1124 228 ELLS 231 (252)
T ss_pred hhhc
Confidence 8765
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-47 Score=359.24 Aligned_cols=218 Identities=28% Similarity=0.363 Sum_probs=195.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 181 (641)
+++.+++++|+. ..++++||||.++.||+++|+|||||||||+||+|++++.|++ |+|+++|.+... .+
T Consensus 2 l~v~~l~K~y~~----~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~---G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 2 LEVTDLTKSYGS----KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS---GKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred eeeeehhhhccC----HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCC---ceEEEeecccccChHHHh
Confidence 678899999853 3459999999999999999999999999999999999999986 999999976422 24
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+++|.++.+..++..||++|||.|.+.+.--. ..+.+++++++.+.++|.+++|+.++ ++|.|+||||+||||
T Consensus 75 r~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~-~~~~kari~~l~k~l~l~~~~~rRv~------~~S~G~kqkV~iARA 147 (245)
T COG4555 75 RKIGVLFGERGLYARLTARENLKYFARLNGLS-RKEIKARIAELSKRLQLLEYLDRRVG------EFSTGMKQKVAIARA 147 (245)
T ss_pred hhcceecCCcChhhhhhHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHhChHHHHHHHHh------hhchhhHHHHHHHHH
Confidence 67999998899999999999999888775211 12357789999999999999999987 999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (641)
|+++|++++|||||||||..+...+.+.+++++++|++||+++|.. +++..+||+|++|++|++|+.|+.+++...
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999987775 689999999999999999999999887653
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=360.69 Aligned_cols=222 Identities=25% Similarity=0.360 Sum_probs=194.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCCC-
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEMP- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~~- 180 (641)
..++++||++.|. .+++|+|||+.|.+++++|+|||||||||||||++..+.. +..+.+|+|.++|+++...
T Consensus 6 ~~~~~~~l~~yYg-----~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 6 PAIEVRDLNLYYG-----DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred ceeEecceeEEEC-----chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 4689999999994 5789999999999999999999999999999999999854 3445789999999986432
Q ss_pred ------CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHH
Q 006548 181 ------YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGER 253 (641)
Q Consensus 181 ------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGer 253 (641)
++++|+|+|.+.-|| +|++||+.|+.+++.-.. .+.++.|+..|+...|. +..|++ +....+|||||+
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL---~~sa~~LSGGQQ 155 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRL---HKSALGLSGGQQ 155 (253)
T ss_pred CCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHh---hCCccCCChhHH
Confidence 467999999999998 899999999988764333 34677899999999995 566665 446779999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
||++|||||+.+|+||+||||||+|||.+..+|-+++.+|+ +.-|||++||.+ .++.+..|+..++..|++|++|+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T~ 233 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPTD 233 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCHH
Confidence 99999999999999999999999999999999999999998 467888888876 5899999999999999999999998
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
+++.
T Consensus 234 ~iF~ 237 (253)
T COG1117 234 KIFT 237 (253)
T ss_pred hhhc
Confidence 8754
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=389.26 Aligned_cols=219 Identities=22% Similarity=0.289 Sum_probs=190.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|..++ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++...
T Consensus 2 I~~~~lsk~y~~~~-~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~---G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 2 IKLSNITKVFHQGT-KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTS---GSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred EEEEEEEEEECCCC-cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHHHH
Confidence 78999999995321 13479999999999999999999999999999999999999975 999999987532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.++.++|++|+..+++.+||+||+.++..... ....+.++++.++++.+||.+..++.+ .+|||||||||+
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~v~e~l~~vgL~~~~~~~~------~~LSgGqkQRV~ 150 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN-TPKDEIKRKVTELLALVGLGDKHDSYP------SNLSGGQKQRVA 150 (343)
T ss_pred HHHhcCEEEEECCccccccCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHHHH
Confidence 13479999999999999999999998765321 111234567899999999998887754 599999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|++|||||||++||+.++..++++|++++++ |.|||+++|+. +.+.++||+|++|++|++++.|++++++
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999865 99999988886 5788999999999999999999998875
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-45 Score=390.93 Aligned_cols=218 Identities=24% Similarity=0.379 Sum_probs=192.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 181 (641)
.++++||++.|. +.+.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++ |+|.++|++... ..
T Consensus 3 ~l~i~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~---G~I~~~g~~i~~~~~~~ 75 (356)
T PRK11650 3 GLKLQAVRKSYD----GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITS---GEIWIGGRVVNELEPAD 75 (356)
T ss_pred EEEEEeEEEEeC----CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHH
Confidence 489999999983 13569999999999999999999999999999999999999875 999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++||+|+..+||++||+||+.|+...+. ....+.+++++++++.+||.+..++.+ ++|||||||||+||||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGq~QRvalARA 148 (356)
T PRK11650 76 RDIAMVFQNYALYPHMSVRENMAYGLKIRG-MPKAEIEERVAEAARILELEPLLDRKP------RELSGGQRQRVAMGRA 148 (356)
T ss_pred CCEEEEeCCccccCCCCHHHHHHhHHhhcC-CCHHHHHHHHHHHHHHcCChhHhhCCh------hhCCHHHHHHHHHHHH
Confidence 579999999999999999999999865331 111224567899999999999888855 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|+++|++ .++..+||++++|++|+++..|+++++.+
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999865 89999998887 57999999999999999999999988754
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=384.78 Aligned_cols=217 Identities=27% Similarity=0.347 Sum_probs=191.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~ 180 (641)
.++++||++.|. .+.+|+|||+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 7 ~i~i~~l~k~~~-----~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~---G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 7 PIDFRNVEKRYG-----DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA---GSISLCGEPVPSRARHA 78 (306)
T ss_pred eEEEEeEEEEEC-----CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEecccchHHH
Confidence 689999999984 3579999999999999999999999999999999999999875 999999987532 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
++.+||++|++.+++.+||+||+.+.+..+. ....+..++++++++.++|.+..++.++ +|||||||||+||+
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrl~la~ 151 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYFG-LSAAAARALVPPLLEFAKLENKADAKVG------ELSGGMKRRLTLAR 151 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchHhcCchh------hCCHHHHHHHHHHH
Confidence 3579999999999999999999987665431 1111234568899999999988888664 99999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. +++.++||+|++|++|++++.|+++++.+
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999987899999988887 58999999999999999999999988764
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=370.51 Aligned_cols=216 Identities=26% Similarity=0.366 Sum_probs=185.1
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~~ 72 (235)
T cd03261 1 IELRGLTKSFG-----GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS---GEVLIDGEDISGLSEAEL 72 (235)
T ss_pred CeEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccChhhH
Confidence 46899999884 3469999999999999999999999999999999999999875 999999987432
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.++.++|++|++.+++.+||+||+.+...........+..++++++++.+||.+..++.+ .+|||||||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~ 146 (235)
T cd03261 73 YRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP------AELSGGMKKRVA 146 (235)
T ss_pred HHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHHH
Confidence 124699999999999999999999886432211111123456889999999988777755 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 999999999999999999999999999999999999864 89999988887 4788999999999999999999887653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=399.98 Aligned_cols=268 Identities=24% Similarity=0.307 Sum_probs=216.2
Q ss_pred EEeCccccccccCCCCcccccccCCCCCCCCCCcch--hhhhccCCceEEEEeEEEEEeccc------ccccceeeceee
Q 006548 60 VEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGA--AVARKIAGASVVWKDLTVTIKGKR------RYSDKVVKSSNG 131 (641)
Q Consensus 60 v~e~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~ls~~~~~~~------~~~~~iL~~vs~ 131 (641)
++|.|++.++...|.|||++.+.++.+......... ..........++++||++.|..++ .+..++++||||
T Consensus 233 iVE~G~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf 312 (539)
T COG1123 233 IVETGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSF 312 (539)
T ss_pred EEEecCHHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeee
Confidence 688999999999999999999866432211110000 000000235689999999997432 234679999999
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------CCc--eEEEEcCCCccCCCCCHHHH
Q 006548 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-------PYG--SYGFVERETTLIGSLTVREY 202 (641)
Q Consensus 132 ~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-------~~~--~~~yv~Q~~~l~~~lTV~E~ 202 (641)
.+++||++||+|+||||||||.|+|+|+.+|++ |+|.++|.+... .++ ++.|+.++..|.|.+||+++
T Consensus 313 ~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~---G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~ 389 (539)
T COG1123 313 DLREGETLGLVGESGSGKSTLARILAGLLPPSS---GSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDI 389 (539)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHH
Confidence 999999999999999999999999999999975 999999976211 112 35555556789999999999
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHH
Q 006548 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (641)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~ 281 (641)
+..+..........+.++++.++++.+||.. .+++ +|++||||||||++|||||+.+|++|++|||||.||+.
T Consensus 390 i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~r------yP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvs 463 (539)
T COG1123 390 LAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR------YPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVS 463 (539)
T ss_pred HHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhc------CchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHH
Confidence 9988765544333345678999999999975 5555 67799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 282 SALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 282 ~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
.+..++++|++++++ |.|.|+++|+. ..+..+||||++|++|++|+.|+.+++++
T Consensus 464 vqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~~i~drv~vm~~G~iVE~G~~~~v~~ 519 (539)
T COG1123 464 VQAQVLNLLKDLQEELGLTYLFISHDL-AVVRYIADRVAVMYDGRIVEEGPTEKVFE 519 (539)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHhhCceEEEEECCeEEEeCCHHHHhc
Confidence 999999999999965 99999977765 68999999999999999999998887754
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-45 Score=389.33 Aligned_cols=217 Identities=24% Similarity=0.349 Sum_probs=192.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 181 (641)
.++++||++.|. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|++... ..
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~---G~I~i~g~~~~~~~~~~ 75 (353)
T TIGR03265 4 YLSIDNIRKRFG-----AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTA---GTIYQGGRDITRLPPQK 75 (353)
T ss_pred EEEEEEEEEEeC-----CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHH
Confidence 589999999984 3569999999999999999999999999999999999999875 999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++||+|+..+||++||+||+.|+...+.. ...+.+++++++++.++|.++.++.+ ++|||||||||+||||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~-~~~~~~~~~~~~l~~l~L~~~~~~~~------~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGM-GRAEVAERVAELLDLVGLPGSERKYP------GQLSGGQQQRVALARA 148 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCchhhCCh------hhCCHHHHHHHHHHHH
Confidence 5799999999999999999999998654311 11234667999999999999988754 5999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|+.+|++|||||||++||..++..+.+.|+++.++ |.|+|+++|++ .++..+||+|++|++|+++..|+++++.+
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999865 89999988887 58899999999999999999999988764
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=387.46 Aligned_cols=217 Identities=25% Similarity=0.437 Sum_probs=192.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 181 (641)
.++++||++.|. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++.. ..
T Consensus 6 ~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~~~g~~i~~~~~~~ 77 (351)
T PRK11432 6 FVVLKNITKRFG-----SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE---GQIFIDGEDVTHRSIQQ 77 (351)
T ss_pred EEEEEeEEEEEC-----CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHH
Confidence 689999999984 3469999999999999999999999999999999999999975 999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++||+|+..+||++||+||+.|+...+.. ...+.+++++++++.+||.++.++.+ +.|||||||||+||||
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~-~~~~~~~~v~~~l~~~gl~~~~~r~~------~~LSgGq~QRVaLARa 150 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKMLGV-PKEERKQRVKEALELVDLAGFEDRYV------DQISGGQQQRVALARA 150 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHcCC-CHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHHHHHHH
Confidence 6799999999999999999999998654321 11234668999999999998887754 5999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|+++|++ +++..+||+|++|++|+++..|+++++..
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999865 89999988887 58899999999999999999999988753
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=347.26 Aligned_cols=211 Identities=24% Similarity=0.321 Sum_probs=187.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------- 178 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~------- 178 (641)
+.|+||++.|++ ++.+|+|||+++++||++-|+||||||||||||+|.+...|+. |+|.++|.+..
T Consensus 2 I~f~~V~k~Y~~----g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~---G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 2 IRFENVSKAYPG----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTR---GKILVNGHDLSRLKGREI 74 (223)
T ss_pred eeehhhhhhcCC----CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCC---ceEEECCeeccccccccc
Confidence 689999999964 3679999999999999999999999999999999999999976 99999998742
Q ss_pred -CCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 179 -MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 179 -~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
..+++||+|+||..|.+..||+||+.|+....-. ...+.++++.++|+.+||.+.++.. |.+|||||||||+
T Consensus 75 P~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~-~~~~i~~rV~~~L~~VgL~~k~~~l------P~~LSGGEQQRva 147 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGK-PPREIRRRVSEVLDLVGLKHKARAL------PSQLSGGEQQRVA 147 (223)
T ss_pred chhhheeeeEeeeccccccchHhhhhhhhhhccCC-CHHHHHHHHHHHHHHhccchhhhcC------ccccCchHHHHHH
Confidence 1246899999999999999999999998765421 2234678899999999999888775 4599999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||++.+|++||.||||.+|||..+.++++++.++.+.|+||++.+|+. ..+..+-.|++.|++|+++.+..
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~-~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL-ELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH-HHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999999999999999988875 57888888999999999987653
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=344.22 Aligned_cols=214 Identities=28% Similarity=0.403 Sum_probs=184.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--C-Cc
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--P-YG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~--~-~~ 182 (641)
+.+++|.+.|.. .==..++.+.+||++||+||||||||||||+|+|...|.+ |+|++||++... + .+
T Consensus 2 l~L~~V~~~y~~-------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~---G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYGH-------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPAS---GEILINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeCc-------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCC---ceEEEcCeecCcCCcccC
Confidence 456677777742 2234678889999999999999999999999999999975 999999987532 2 35
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
-++.++|+..+|.++||.+|+-++..-.+.-. ...+++++.++..+||..+.+++++ +|||||||||++||+|
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~-a~~r~~v~~aa~~vGl~~~~~RLP~------~LSGGqRQRvALARcl 144 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLN-AEQREKVEAAAAQVGLAGFLKRLPG------ELSGGQRQRVALARCL 144 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccccC-HHHHHHHHHHHHHhChhhHhhhCcc------ccCchHHHHHHHHHHH
Confidence 69999999999999999999977643222111 2366789999999999999999776 9999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
+++-+||+||||+|+|||.-+.++..++.+++ +++.|+++++|||. ++.+++|+++++++|+|.+.|+.++.+.
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 99999999999999999999999999999998 45899999999995 7899999999999999999999887653
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=386.25 Aligned_cols=219 Identities=24% Similarity=0.324 Sum_probs=192.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 181 (641)
.++++||++.|. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ .+|+|.++|++... ..
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~-~~G~i~~~g~~~~~~~~~~ 78 (362)
T TIGR03258 5 GIRIDHLRVAYG-----ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG-LTGRIAIADRDLTHAPPHK 78 (362)
T ss_pred EEEEEEEEEEEC-----CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CCEEEEECCEECCCCCHHH
Confidence 589999999994 3469999999999999999999999999999999999998862 23999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++||+|+..++|++||+||+.|+...+. ....+.+++++++++.+||.+..++.+ ++|||||||||+||||
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~-~~~~~~~~~v~~~l~~~gL~~~~~~~~------~~LSgGq~QRvaLARA 151 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQK-MPKADIAERVADALKLVGLGDAAAHLP------AQLSGGMQQRIAIARA 151 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCCchhhCCh------hhCCHHHHHHHHHHHH
Confidence 579999999999999999999999865432 111234567899999999999888855 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|+.+|++|||||||+|||+..+..+.+.|++++++ |.|+|+++|++ +++..+||+|++|++|+++..|+++++.+
T Consensus 152 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 152 IAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999876 78999988887 57899999999999999999999998864
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=385.00 Aligned_cols=218 Identities=24% Similarity=0.357 Sum_probs=191.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 181 (641)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++ |+|.++|++... ..
T Consensus 2 ~L~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~i~g~~i~~~~~~~ 73 (353)
T PRK10851 2 SIEIANIKKSFG-----RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS---GHIRFHGTDVSRLHARD 73 (353)
T ss_pred EEEEEEEEEEeC-----CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHHH
Confidence 478999999984 3469999999999999999999999999999999999999875 999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcC---CCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQL---PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
+.++||+|+..++|.+||+||+.|+..... .....+.+++++++++.++|.+..++.+ .+|||||||||+|
T Consensus 74 r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~LSgGq~QRval 147 (353)
T PRK10851 74 RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP------AQLSGGQKQRVAL 147 (353)
T ss_pred CCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHHHHH
Confidence 579999999999999999999998765321 0111124567899999999998888754 5999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|+++|++ .++..+||+|++|++|++++.|+++++.+
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999866 89999988887 58899999999999999999999988754
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-44 Score=381.92 Aligned_cols=219 Identities=26% Similarity=0.332 Sum_probs=192.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++||++.|. .+.+|+|+|+++++||++||+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 40 ~~i~i~nl~k~y~-----~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~---G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 40 VAIDLAGVSKSYG-----DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDA---GKITVLGVPVPARARL 111 (340)
T ss_pred eeEEEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCc---eEEEECCEECCcchHH
Confidence 4699999999994 3569999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
.++.+||++|+..+++.+||.||+.+...... ....+..++++++++.++|.+..++.++ +|||||||||+||
T Consensus 112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~L~~~~~~~~~------~LS~G~kqrv~lA 184 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFG-MSTREIEAVIPSLLEFARLESKADARVS------DLSGGMKRRLTLA 184 (340)
T ss_pred HhccEEEEeCCccCCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchhhCCChh------hCCHHHHHHHHHH
Confidence 13569999999999999999999987554331 1111234567889999999988888665 9999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (641)
+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. +++.++||+|++|++|++++.|+++++.+.
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999999988899999988887 589999999999999999999999987653
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=385.58 Aligned_cols=218 Identities=25% Similarity=0.357 Sum_probs=192.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~ 180 (641)
..++++|+++.|. .+.+|+|+|+.+++||+++|+|||||||||||++|+|+.+|++ |+|.++|++... .
T Consensus 13 ~~L~l~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~---G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 13 PLVELRGISKSFD-----GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDS---GRIMLDGQDITHVPAE 84 (375)
T ss_pred ceEEEEEEEEEEC-----CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHH
Confidence 3589999999984 3469999999999999999999999999999999999999875 999999987532 2
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
.+.++||+|+..+||++||+||+.|+...+.. ...+.+++++++++.+||.+..++.+ .+|||||||||+|||
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~p------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKT-PAAEITPRVMEALRMVQLEEFAQRKP------HQLSGGQQQRVAIAR 157 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHHHHHHH
Confidence 35799999999999999999999998653311 11124567899999999999888855 499999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||+.+|++|||||||+|||..++..+.+.|+++.++ |.|+|+++|++ .++..++|+|++|++|+++..|+++++.+
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999865 89999988887 58899999999999999999999988754
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=361.82 Aligned_cols=217 Identities=23% Similarity=0.343 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 181 (641)
.++++||++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 73 (239)
T cd03296 2 SIEVRNVSKRFG-----DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDS---GTILFGGEDATDVPVQE 73 (239)
T ss_pred EEEEEeEEEEEC-----CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCCccc
Confidence 478999999984 2469999999999999999999999999999999999998875 999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-C--ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLP-G--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~--~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
+.++|++|++.+++.+||+||+.+....... . ...+..++++++++.+||.+..++.+ .+|||||||||+|
T Consensus 74 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~l 147 (239)
T cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP------AQLSGGQRQRVAL 147 (239)
T ss_pred cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh------hhCCHHHHHHHHH
Confidence 5699999999999999999999876543211 0 11123456788999999988877755 4999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 99999999999999999999999999999999999865 89999998887 4788999999999999999999887653
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=363.14 Aligned_cols=216 Identities=24% Similarity=0.328 Sum_probs=185.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|.+....
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 72 (236)
T cd03219 1 LEVRGLTKRFG-----GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTS---GSVLFDGEDITGLPPHEI 72 (236)
T ss_pred CeeeeeEEEEC-----CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---ceEEECCEECCCCCHHHH
Confidence 36789999884 2469999999999999999999999999999999999998875 9999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC---------ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPG---------FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~---------~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG 250 (641)
...++|++|++.+++.+||+||+.+........ ...+..++++++++.+|+.+..++.+ ++|||
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSg 146 (236)
T cd03219 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA------GELSY 146 (236)
T ss_pred HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh------hhCCH
Confidence 235999999999999999999998865432111 01123456889999999988777654 49999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|+++..|
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~ 225 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEG 225 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEeec
Confidence 999999999999999999999999999999999999999999987889999988887 4788999999999999999999
Q ss_pred ChhHHH
Q 006548 331 ETLACL 336 (641)
Q Consensus 331 ~~~~~~ 336 (641)
+++++.
T Consensus 226 ~~~~~~ 231 (236)
T cd03219 226 TPDEVR 231 (236)
T ss_pred CHHHhc
Confidence 887653
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-44 Score=374.85 Aligned_cols=218 Identities=25% Similarity=0.316 Sum_probs=189.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 3 ~~i~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~ 74 (303)
T TIGR01288 3 VAIDLVGVSKSYG-----DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR---GKITVLGEPVPSRARL 74 (303)
T ss_pred cEEEEEeEEEEeC-----CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECcccHHH
Confidence 3689999999984 3469999999999999999999999999999999999998875 9999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
++.++|++|++.+++.+||+||+.+...... ....+..++++++++.++|.+..++.++ +|||||||||+||
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~l~~~~~~~~~------~LSgG~~qrv~la 147 (303)
T TIGR01288 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG-MSTREIEAVIPSLLEFARLESKADVRVA------LLSGGMKRRLTLA 147 (303)
T ss_pred HhhcEEEEeccccCCcCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCChhHhcCchh------hCCHHHHHHHHHH
Confidence 3569999999999999999999986543321 1111234567889999999988877654 9999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++++.|+++++.+
T Consensus 148 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 148 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999988899999988887 48889999999999999999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-44 Score=358.47 Aligned_cols=213 Identities=27% Similarity=0.366 Sum_probs=184.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 181 (641)
++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..
T Consensus 1 i~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (220)
T cd03265 1 IEVENLVKKYG-----DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS---GRATVAGHDVVREPREVR 72 (220)
T ss_pred CEEEEEEEEEC-----CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEecCcChHHHh
Confidence 46899999884 3469999999999999999999999999999999999998875 999999976432 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++.+||+||+.+....+.. ...+.+++++++++.++|.+..++.+ ..|||||||||+||+|
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qr~~la~a 145 (220)
T cd03265 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGV-PGAERRERIDELLDFVGLLEAADRLV------KTYSGGMRRRLEIARS 145 (220)
T ss_pred hcEEEecCCccccccCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHhhCCh------hhCCHHHHHHHHHHHH
Confidence 4699999999999999999999886543211 11123457889999999988877755 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|+++..|++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999999999999999999876 89999988887 47889999999999999999988765
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=357.27 Aligned_cols=216 Identities=29% Similarity=0.366 Sum_probs=183.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 185 (641)
++++|+++.|.+.+ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++.....+.++
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGGG-GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS---GEVLVDGEPVTGPGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCCC-cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECccccCcEE
Confidence 36899999885211 11579999999999999999999999999999999999998875 999999987654446799
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC
Q 006548 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (641)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (641)
|++|++.+++.+||+||+.+....+.. ......++++++++.++|.+..++.+ ..||||||||++|||||+.+
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGV-PKAEARERAEELLELVGLSGFENAYP------HQLSGGMRQRVALARALAVD 149 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhhhhCCc------ccCCHHHHHHHHHHHHHHcC
Confidence 999999999989999999886543211 11123457889999999988877755 49999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEe--CCeEEEEeChh
Q 006548 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETL 333 (641)
Q Consensus 266 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~--~G~iv~~G~~~ 333 (641)
|++|||||||+|||+.++..+.+.|+++.+ .|+|||+++|++ .++.++||++++|+ +|+++..++++
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999999999999999999999975 489999988887 47889999999999 79999888753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-44 Score=356.68 Aligned_cols=209 Identities=28% Similarity=0.416 Sum_probs=179.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 182 (641)
++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++... ..+
T Consensus 1 l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03259 1 LELKGLSKTYG-----SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS---GEILIDGRDVTGVPPERR 72 (213)
T ss_pred CeeeeeEEEeC-----CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEcCcCchhhc
Confidence 36889999884 2469999999999999999999999999999999999998875 999999987532 234
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++|++.+++.+||+||+.+...... .......++++++++.++|.+..++.+ ..|||||||||+|||||
T Consensus 73 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrl~la~al 145 (213)
T cd03259 73 NIGMVFQDYALFPHLTVAENIAFGLKLRG-VPKAEIRARVRELLELVGLEGLLNRYP------HELSGGQQQRVALARAL 145 (213)
T ss_pred cEEEEcCchhhccCCcHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCChhhhhcCh------hhCCHHHHHHHHHHHHH
Confidence 69999999999999999999987643321 111123456889999999998887755 49999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999864 89999988887 4788999999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-44 Score=383.46 Aligned_cols=217 Identities=28% Similarity=0.412 Sum_probs=190.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 181 (641)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++... ..
T Consensus 3 ~l~i~~l~~~~~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~---G~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 3 SVTLRNVTKAYG-----DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITS---GDLFIGEKRMNDVPPAE 74 (369)
T ss_pred EEEEEEEEEEeC-----CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHhH
Confidence 488999999984 3469999999999999999999999999999999999999875 999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|+..+++.+||+||+.|+...+.. ...+.+++++++++.+||.+..++.+ .+|||||||||+||||
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~lgL~~~~~~~~------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGA-KKEEINQRVNQVAEVLQLAHLLDRKP------KALSGGQRQRVAIGRT 147 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHHhhcCC-CHHHHHHHHHHHHHHcCChhhhcCCh------hhCCHHHHHHHHHHHH
Confidence 5699999999999999999999987653311 11224567899999999998887755 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|+++|++ +++..+||++++|++|+++..|+++++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999865 89999988887 57889999999999999999999988754
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-44 Score=357.46 Aligned_cols=207 Identities=24% Similarity=0.301 Sum_probs=178.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++|+++.|+++ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++...
T Consensus 2 l~~~~l~~~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 2 IRFEQVSKAYPGG---HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTR---GKIRFNGQDLTRLRGREI 75 (216)
T ss_pred eEEEEEEEEecCC---CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEehhhcChhHH
Confidence 6899999998421 2469999999999999999999999999999999999998875 999999987521
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.++.++|++|++.+++.+||+||+.+....... ......++++++++.+||.+..++.+ .+|||||||||+
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~ 148 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGV-PPRDANERVSAALEKVGLEGKAHALP------MQLSGGEQQRVA 148 (216)
T ss_pred HHHHHhceEEecCccccccccHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHHH
Confidence 124699999999999999999999887543211 11124567889999999988887755 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||++++|++|++
T Consensus 149 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999987789999988887 478889999999999974
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=382.08 Aligned_cols=217 Identities=22% Similarity=0.347 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 181 (641)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+. |+|.++|++... .+
T Consensus 19 ~l~l~~v~~~~~-----~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~i~g~~i~~~~~~~ 90 (377)
T PRK11607 19 LLEIRNLTKSFD-----GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTA---GQIMLDGVDLSHVPPYQ 90 (377)
T ss_pred eEEEEeEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHHH
Confidence 599999999984 3469999999999999999999999999999999999999875 999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.+|||+|+..+||++||.||+.|+...+.. ...+.+++++++++.++|.+..++.+ ++|||||||||+||||
T Consensus 91 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~-~~~~~~~~v~~~l~~l~L~~~~~~~~------~~LSgGq~QRVaLARA 163 (377)
T PRK11607 91 RPINMMFQSYALFPHMTVEQNIAFGLKQDKL-PKAEIASRVNEMLGLVHMQEFAKRKP------HQLSGGQRQRVALARS 163 (377)
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHHHHHHH
Confidence 5799999999999999999999998654321 11234567899999999998887754 5999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|+.+|++|||||||++||..++..+.+.|+++.+ .|.|+|+++|++ +++..++|++++|++|+++..|+++++.+
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999875 489999988887 58899999999999999999999988764
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=361.27 Aligned_cols=218 Identities=26% Similarity=0.362 Sum_probs=190.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~------ 178 (641)
.+.++|++++|++. +.+|+|+|+.+++||.++|+|+||||||||+++|+|+++|.. |+|.++|.+..
T Consensus 3 ~i~~~~l~~~y~~~----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~---G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 3 MIEAENLSFRYPGR----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS---GEVLVDGLDTSSEKSLL 75 (235)
T ss_pred eEEEEEEEEEcCCC----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCC---CEEEECCeeccchhhHH
Confidence 57899999999632 689999999999999999999999999999999999999975 99999998743
Q ss_pred CCCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 179 MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 179 ~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
..++.+|||+|++ +++ .-||.|.+.|+.... +....+.+++++++++.+|+.+++++. +..|||||||||
T Consensus 76 ~~~~~vG~VfQnpd~q~~-~~tV~~evafg~~n~-g~~~~e~~~rv~~~l~~vgl~~~~~r~------p~~LSGGqkqRv 147 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLF-GPTVEDEVAFGLENL-GLPREEIEERVAEALELVGLEELLDRP------PFNLSGGQKQRV 147 (235)
T ss_pred HhhcceEEEEECcccccc-cCcHHHHHhhchhhc-CCCHHHHHHHHHHHHHHcCchhhccCC------ccccCCcceeeH
Confidence 1246799999986 455 559999999986532 222224678899999999999998774 569999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
+||.+|+.+|++|+|||||||||+..+..+++.+++|.++ |.|+|+++|+. +.+..+|||+++|++|+++++|++.++
T Consensus 148 aIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p~~i 226 (235)
T COG1122 148 AIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAEI 226 (235)
T ss_pred HhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCHHHH
Confidence 9999999999999999999999999999999999999977 68999988876 689999999999999999999999877
Q ss_pred HHH
Q 006548 336 LQH 338 (641)
Q Consensus 336 ~~~ 338 (641)
++.
T Consensus 227 ~~~ 229 (235)
T COG1122 227 FND 229 (235)
T ss_pred hhh
Confidence 653
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=358.81 Aligned_cols=215 Identities=23% Similarity=0.361 Sum_probs=185.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03218 1 LRAENLSKRYG-----KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS---GKILLDGQDITKLPMHKR 72 (232)
T ss_pred CeEEEEEEEeC-----CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccCCHhHH
Confidence 46889999984 3469999999999999999999999999999999999999875 999999986421
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
..+.++|++|++.+++.+||+||+.+....... ......++++++++.+++.+..++.+ +.|||||||||+||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~la 145 (232)
T cd03218 73 ARLGIGYLPQEASIFRKLTVEENILAVLEIRGL-SKKEREEKLEELLEEFHITHLRKSKA------SSLSGGERRRVEIA 145 (232)
T ss_pred HhccEEEecCCccccccCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHHHHH
Confidence 124599999999999999999999876433211 11123456789999999988777754 49999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.++||++++|++|+++..|+.+++.
T Consensus 146 ~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 146 RALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999999999999999999999999877899999888874 789999999999999999999887653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=370.65 Aligned_cols=231 Identities=23% Similarity=0.294 Sum_probs=191.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++|+++.|..++...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~~ 78 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE---GKVTVGDIVVSSTSKQKE 78 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCC---cEEEECCEECcccccccc
Confidence 78999999995322122469999999999999999999999999999999999999875 999999987531
Q ss_pred ---CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHH
Q 006548 180 ---PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGER 253 (641)
Q Consensus 180 ---~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGer 253 (641)
.++.++||+|++ .+++ .||.||+.|+..... ....+.++++.++++.+||. +..++. ++.||||||
T Consensus 79 ~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~~LSgGqk 150 (288)
T PRK13643 79 IKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFG-IPKEKAEKIAAEKLEMVGLADEFWEKS------PFELSGGQM 150 (288)
T ss_pred HHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCCChhhccCC------cccCCHHHH
Confidence 124699999986 5564 699999998754321 11123456788999999995 466654 459999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||+|++|++|++++.|+++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~ 229 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTPS 229 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999987799999998887 5788999999999999999999999
Q ss_pred HHHH---HhhhcCCCCCC
Q 006548 334 ACLQ---HFSNAGFPCPI 348 (641)
Q Consensus 334 ~~~~---~f~~~g~~~~~ 348 (641)
++.+ .+...|+.+|.
T Consensus 230 ~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 230 DVFQEVDFLKAHELGVPK 247 (288)
T ss_pred HHHcCHHHHHHcCCCCCh
Confidence 8753 34455666554
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=348.58 Aligned_cols=218 Identities=23% Similarity=0.407 Sum_probs=193.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P--- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-~--- 180 (641)
.+..+||.++|+ +++++++||+.+++||+++++|||||||||.+.++.|+.+|++ |+|.+||.++.. +
T Consensus 4 ~L~a~~l~K~y~-----kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~---G~i~ld~~diT~lPm~~ 75 (243)
T COG1137 4 TLVAENLAKSYK-----KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS---GKILLDDEDITKLPMHK 75 (243)
T ss_pred EEEehhhhHhhC-----CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCC---ceEEECCcccccCChHH
Confidence 588999999884 5689999999999999999999999999999999999999986 999999987542 1
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCcc-chHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
+..+||+||++.+|..+||+||+......+..... .+++.+++++|+++++.++++++-. .||||||+|+.
T Consensus 76 RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~------sLSGGERRR~E 149 (243)
T COG1137 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAY------SLSGGERRRVE 149 (243)
T ss_pred HhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCccc------ccccchHHHHH
Confidence 23689999999999999999999877665542211 2345568899999999999998644 99999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|||||+.+|+.++||||++|.||.+..+|.++++.|++.|..|++|-|.- .|...+|||.+++++|++.++|+++++.+
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNV-REtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNV-RETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccH-HHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999999999999999999999999999999999999999999966654 58899999999999999999999998864
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=347.16 Aligned_cols=216 Identities=23% Similarity=0.338 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||+..| +..++|++||+++++||+++|+|+||+|||||||+|+|+.++.+ |+|.++|+++...
T Consensus 3 mL~v~~l~~~Y-----G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~---G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 3 MLEVENLSAGY-----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRS---GRIIFDGEDITGLPPHE 74 (237)
T ss_pred ceeEEeEeecc-----cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eeEEECCeecCCCCHHH
Confidence 58999999998 34689999999999999999999999999999999999999864 9999999986431
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcC-CchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-LSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
+..++||||...+||.|||+|||..++..+.... .....++++.+.+- |.+..+++-| .|||||||.++
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~--~~~~~~e~v~~lFP~Lker~~~~aG------~LSGGEQQMLA 146 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKE--AQERDLEEVYELFPRLKERRNQRAG------TLSGGEQQMLA 146 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhcccccc--cccccHHHHHHHChhHHHHhcCccc------CCChHHHHHHH
Confidence 3569999999999999999999988765432211 12222788888885 6777777665 89999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|++|+|||||.||-|.-..+|.+.+++++++ |.||++ ++|....+.+++||.++|.+|++++.|+.+++.
T Consensus 147 iaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlL-VEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 147 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILL-VEQNARFALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred HHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEE-EeccHHHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999966 668887 688888999999999999999999999998876
Q ss_pred H
Q 006548 337 Q 337 (641)
Q Consensus 337 ~ 337 (641)
.
T Consensus 226 ~ 226 (237)
T COG0410 226 A 226 (237)
T ss_pred c
Confidence 4
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=358.89 Aligned_cols=216 Identities=23% Similarity=0.337 Sum_probs=185.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~-----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 2 IEFKNVSKHFG-----PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITS---GDLIVDGLKVNDPKVDER 73 (240)
T ss_pred EEEEeEEEEEC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCChhHH
Confidence 68999999884 3469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.++.++|++|++.+++.+||+||+.+...........+..+++.++++.+||.+..++.+ ..||||||||++|
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~~qrv~l 147 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP------SELSGGQQQRVAI 147 (240)
T ss_pred HHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh------hhcCHHHHHHHHH
Confidence 124699999999999999999999875421111111123456889999999988777754 4999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.++||++++|++|++++.|+++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999999999999999877999999999874 788899999999999999999887654
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=377.57 Aligned_cols=219 Identities=23% Similarity=0.299 Sum_probs=189.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
++++||++.|+.++ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+....
T Consensus 2 i~i~~l~~~y~~~~-~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~---G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 2 IELKNISKVFPQGG-RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTS---GRVLVDGQDLTALSEKEL 77 (343)
T ss_pred EEEEeEEEEeCCCC-CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCcCCHHHH
Confidence 68999999995211 13579999999999999999999999999999999999999875 9999999875321
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
++.++|++|++.+++.+||+||+.+....... ...+.+++++++++.+||.+..++.+ .+|||||||||+
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGq~qRv~ 150 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGT-PKAEIKARVTELLELVGLSDKADRYP------AQLSGGQKQRVA 150 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHHHH
Confidence 24699999999999999999999887543311 11123467889999999998887754 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999865 89999988887 4788999999999999999999988775
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=358.26 Aligned_cols=219 Identities=23% Similarity=0.301 Sum_probs=186.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
++++|+++.|.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 2 i~~~~l~~~~~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 2 IELKNVSKVFGDTG-GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTS---GSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred eEEecceEEccCCC-CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcccCCHHHH
Confidence 67899999985310 11379999999999999999999999999999999999999875 9999999875321
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.+.++|++|++.+++.+|++||+.+....+. .......+.++++++.++|.+..++.+ ..|||||||||+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~ 150 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG-VPKAEIEERVLELLELVGLEDKADAYP------AQLSGGQKQRVG 150 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCChhhhhcCh------hhCCHHHHHHHH
Confidence 2469999999999999999999988654321 111123456889999999988877754 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999865 89999998887 4788999999999999999999877653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=352.86 Aligned_cols=209 Identities=24% Similarity=0.388 Sum_probs=180.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 182 (641)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..+
T Consensus 1 i~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~v~~~g~~~~~~~~~~~ 72 (213)
T cd03301 1 VELENVTKRFG-----NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTS---GRIYIGGRDVTDLPPKDR 72 (213)
T ss_pred CEEEeeEEEEC-----CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCCcccc
Confidence 36899999884 3469999999999999999999999999999999999998875 999999987532 124
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++|++.+++.+||+||+.+...... ....+.+++++++++.+|+.+..++.+ ..||||||||++|||+|
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qr~~laral 145 (213)
T cd03301 73 DIAMVFQNYALYPHMTVYDNIAFGLKLRK-VPKDEIDERVREVAELLQIEHLLDRKP------KQLSGGQRQRVALGRAI 145 (213)
T ss_pred eEEEEecChhhccCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCHHHHhCCh------hhCCHHHHHHHHHHHHH
Confidence 69999999999989999999988654321 111123456889999999998887755 49999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999864 89999998887 4788999999999999999875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=366.63 Aligned_cols=222 Identities=23% Similarity=0.324 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|+......+.+|+|||+++++||++||+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS---GKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---cEEEECCEECCCcCccH
Confidence 478999999985322122579999999999999999999999999999999999999875 999999987532
Q ss_pred --CCceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc--hHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 --PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 --~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~~LSGGerq 254 (641)
..+.+|||+|++. .+...||+||+.+..... .....+..++++++++.+||. +..++. ++.|||||||
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~------~~~LSgGq~q 151 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL-GLSEEEIENRVKRAMNIVGLDYEDYKDKS------PFELSGGQKR 151 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhHHHHC-CCCHHHHHHHHHHHHHHcCCCchhhccCC------cccCCHHHHH
Confidence 1246999999863 333579999998865432 111122446789999999996 556654 4599999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
|++|||||+.+|++|||||||+|||+.++..+.++|++++++ |+|||+++|+. .++.++||||++|++|++++.|+++
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999865 89999988886 5788899999999999999999998
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
++.+
T Consensus 231 ~~~~ 234 (287)
T PRK13637 231 EVFK 234 (287)
T ss_pred HHHh
Confidence 8754
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=357.40 Aligned_cols=214 Identities=25% Similarity=0.342 Sum_probs=181.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEeCCC-
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-----PHSARMYGEVFVNGAKSEM- 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~-----~~~~~~~G~I~~~G~~~~~- 179 (641)
++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+. +|.+ |+|.++|++...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~---G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYYG-----DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE---GEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEcC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCC---eEEEECCEEhhhc
Confidence 46899999884 346999999999999999999999999999999999998 7764 999999987421
Q ss_pred ------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHH
Q 006548 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253 (641)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGer 253 (641)
..+.++|++|++.++ .+||+||+.+.............+++++++++.+|+.+..++.+. +.+||||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~LSgG~~ 147 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH----ALGLSGGQQ 147 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC----cccCCHHHH
Confidence 124699999999888 799999998865432111111134678899999999887766420 359999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ +|||+++|++ +++.++||++++|++|++++.|+++
T Consensus 148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (227)
T cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFGPTE 225 (227)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEecCcc
Confidence 9999999999999999999999999999999999999999877 8999988887 4788899999999999999999875
Q ss_pred H
Q 006548 334 A 334 (641)
Q Consensus 334 ~ 334 (641)
+
T Consensus 226 ~ 226 (227)
T cd03260 226 Q 226 (227)
T ss_pred c
Confidence 4
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=359.24 Aligned_cols=217 Identities=28% Similarity=0.402 Sum_probs=183.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
++++||++.|.+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++....
T Consensus 1 l~~~~l~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYPN----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS---GSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecCC----ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEEECCEeccccCHhHH
Confidence 368899998842 1569999999999999999999999999999999999998865 9999999875321
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhc-------CCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCH
Q 006548 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQ-------LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (641)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~-------~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG 250 (641)
.+.++|++|++.+++.+||+||+.+..... .........+++.++++.++|.+..++.+ .+|||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~ 147 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA------DQLSG 147 (241)
T ss_pred HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc------ccCCH
Confidence 246999999999999999999998753211 00011123456888999999987776644 59999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.++||++++|++|++++.
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVFD 226 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999999999999999999999999864 899999988874 78889999999999999999
Q ss_pred eChhHHH
Q 006548 330 GETLACL 336 (641)
Q Consensus 330 G~~~~~~ 336 (641)
|++++..
T Consensus 227 ~~~~~~~ 233 (241)
T cd03256 227 GPPAELT 233 (241)
T ss_pred cCHHHhh
Confidence 9887753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=360.37 Aligned_cols=217 Identities=24% Similarity=0.313 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 3 AIEVKNLVKKFH-----GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEA---GTIRVGDITIDTARSLS 74 (250)
T ss_pred cEEEeceEEEEC-----CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEcccccccc
Confidence 488999999984 2469999999999999999999999999999999999998875 999999986431
Q ss_pred --------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHH
Q 006548 180 --------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 180 --------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG 251 (641)
.++.++|++|++.+++.+||+||+.++.............++++++++.+||.+..++.+ +.||||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G 148 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYP------RRLSGG 148 (250)
T ss_pred chhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCCh------hhCChH
Confidence 124689999999999999999999875432111111123456889999999987777644 599999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.|+
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM-SFARDVADRAIFMDQGRIVEQGP 227 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987799999988887 47889999999999999999998
Q ss_pred hhHHH
Q 006548 332 TLACL 336 (641)
Q Consensus 332 ~~~~~ 336 (641)
++++.
T Consensus 228 ~~~~~ 232 (250)
T PRK11264 228 AKALF 232 (250)
T ss_pred HHHHh
Confidence 87653
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=354.72 Aligned_cols=213 Identities=24% Similarity=0.374 Sum_probs=182.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 72 (222)
T cd03224 1 LEVENLNAGYG-----KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRS---GSIRFDGRDITGLPPHER 72 (222)
T ss_pred CEEeeEEeecC-----CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcCCCCHHHH
Confidence 46899999884 3469999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHc-CCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-SLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
..+.++|++|++.+++.+|++||+.+...... ..+..++++++++.+ ++.+..++.+ +.||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~~~------~~LS~G~~qrv~l 143 (222)
T cd03224 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYARR---RAKRKARLERVYELFPRLKERRKQLA------GTLSGGEQQMLAI 143 (222)
T ss_pred HhcCeEEeccccccCCCCcHHHHHHHHhhhcC---chhHHHHHHHHHHHHHhhhhhhhCch------hhCCHHHHHHHHH
Confidence 12459999999999999999999988654321 112345577788888 5776666644 5999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||||+.+|++|||||||+|||+.++..+++.|++++++|+|+|+++|++ .++.++||++++|++|+++..|+++++.
T Consensus 144 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 144 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999999999999999987789999988887 5788999999999999999999877653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=381.46 Aligned_cols=217 Identities=27% Similarity=0.383 Sum_probs=189.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|. ++.+|+|+|+.+++||+++|+||||||||||||+|+|+++|.+ |+|.++|++...
T Consensus 3 ~L~~~nls~~y~-----~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~s---G~I~l~G~~i~~~~~~~ 74 (402)
T PRK09536 3 MIDVSDLSVEFG-----DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA---GTVLVAGDDVEALSARA 74 (402)
T ss_pred eEEEeeEEEEEC-----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCC---cEEEECCEEcCcCCHHH
Confidence 589999999984 3579999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhc---CCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQ---LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
..+.++||+|+..+++.+||+||+.++.... ........+++++++++.+|+.+..++.+ ++|||||||||
T Consensus 75 ~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~------~~LSgGerQRv 148 (402)
T PRK09536 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV------TSLSGGERQRV 148 (402)
T ss_pred HhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHH
Confidence 1356999999999989999999998753211 11101124567899999999998888755 49999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
+|||||+++|++|||||||+|||+.++.+++++|++++++|+|||+++|++ +++.++|||+++|++|++++.|++++++
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999987789999988886 5888999999999999999999998864
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=371.80 Aligned_cols=206 Identities=27% Similarity=0.327 Sum_probs=181.0
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----CceEEEEcCCCccCCCC
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----YGSYGFVERETTLIGSL 197 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----~~~~~yv~Q~~~l~~~l 197 (641)
.+.+|+|+|+.+++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+.... ++.+||++|++.+++.+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTS---GTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 3569999999999999999999999999999999999999875 9999999875321 24699999999999999
Q ss_pred CHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCC
Q 006548 198 TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYH 277 (641)
Q Consensus 198 TV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsg 277 (641)
||+||+.+.+..+.. .....+++++++++.+||.+..++.++ .|||||||||+||+||+.+|++|||||||+|
T Consensus 82 tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 82 TGRENLEMMGRLYGL-PKDEAEERAEELLELFELGEAADRPVG------TYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred cHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhHhCCchh------hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999886654311 111234578999999999988887654 9999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 006548 278 LDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (641)
Q Consensus 278 LD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (641)
||+.++..+.+.|++++++|+|||+++|++ +++.++||+|++|++|++++.|+++++.+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999987899999988887 588899999999999999999999887653
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=367.17 Aligned_cols=220 Identities=23% Similarity=0.289 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|++.+...+++|+|||+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS---GTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECCEECccccccc
Confidence 378999999995322122569999999999999999999999999999999999999875 999999987531
Q ss_pred ----CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHH
Q 006548 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGe 252 (641)
..+.++||+|++ .++ ..||+||+.|+..... ....+..++++++++.+||. +..++. ++.|||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~~LSgGq 150 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFG-VSEEDAKQKAREMIELVGLPEELLARS------PFELSGGQ 150 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCCChhhhhCC------cccCCHHH
Confidence 124699999986 455 4799999988754321 11112345789999999996 566664 45999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||+|||+|+.+|++|||||||+|||+.++..+.++|++++++ |.|||+++|+. .++.++||||++|++|++++.|+
T Consensus 151 ~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~~g~ 229 (290)
T PRK13634 151 MRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFLQGT 229 (290)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999865 89999988887 47889999999999999999999
Q ss_pred hhHHH
Q 006548 332 TLACL 336 (641)
Q Consensus 332 ~~~~~ 336 (641)
++++.
T Consensus 230 ~~~~~ 234 (290)
T PRK13634 230 PREIF 234 (290)
T ss_pred HHHHh
Confidence 88875
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=353.05 Aligned_cols=215 Identities=27% Similarity=0.377 Sum_probs=183.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 181 (641)
++++||++.|.+. .+++|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+... ..
T Consensus 1 l~~~~l~~~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (220)
T cd03263 1 LQIRNLTKTYKKG---TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS---GTAYINGYSIRTDRKAAR 74 (220)
T ss_pred CEEEeeEEEeCCC---CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccchHHHh
Confidence 4689999988421 2569999999999999999999999999999999999998875 999999987532 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++.+||+||+.+....... ...+..++++++++.++|.+..++.++ .||||||||++||||
T Consensus 75 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrv~la~a 147 (220)
T cd03263 75 QSLGYCPQFDALFDELTVREHLRFYARLKGL-PKSEIKEEVELLLRVLGLTDKANKRAR------TLSGGMKRKLSLAIA 147 (220)
T ss_pred hhEEEecCcCCccccCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHhChhh------hCCHHHHHHHHHHHH
Confidence 4699999999999999999999876543311 111234568899999999888877554 999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++. .+.++||++++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999999976 589999888874 78889999999999999999987653
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=362.88 Aligned_cols=217 Identities=21% Similarity=0.309 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|.+...
T Consensus 7 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (269)
T PRK11831 7 LVDMRGVSFTRG-----NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDH---GEILFDGENIPAMSRSR 78 (269)
T ss_pred eEEEeCeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEccccChhh
Confidence 589999999884 3469999999999999999999999999999999999998875 999999986431
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
..+.++|++|+..+++.+||.||+.+..............+++.++++.+||.+..++.+ ..|||||||||
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGq~qrv 152 (269)
T PRK11831 79 LYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMP------SELSGGMARRA 152 (269)
T ss_pred HHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHH
Confidence 124699999999999999999999876432111111123456788999999988887755 49999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+++++
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999865 89999988886 578899999999999999999998775
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 232 ~ 232 (269)
T PRK11831 232 Q 232 (269)
T ss_pred h
Confidence 4
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=368.71 Aligned_cols=216 Identities=26% Similarity=0.335 Sum_probs=189.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|++++|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+....
T Consensus 2 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~---G~i~i~g~~~~~~~~~~ 73 (301)
T TIGR03522 2 SIRVSSLTKLYG-----TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDS---GSVQVCGEDVLQNPKEV 73 (301)
T ss_pred EEEEEEEEEEEC-----CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccChHHH
Confidence 478999999984 3569999999999999999999999999999999999999875 9999999875321
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
++.+||++|++.+++.+||.||+.+.+.+... ...+..++++++++.+||.+..++.++ .|||||||||+||+
T Consensus 74 ~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~------~LS~G~~qrv~la~ 146 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGIYGM-KGQLLKQRVEEMIELVGLRPEQHKKIG------QLSKGYRQRVGLAQ 146 (301)
T ss_pred HhceEEecCCCCCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCCchHhcCchh------hCCHHHHHHHHHHH
Confidence 34699999999999999999999887654311 111234568999999999988888654 99999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++|||+++|++|++++.|+++++..
T Consensus 147 al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 147 ALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999965 78999988887 58999999999999999999999998765
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=361.20 Aligned_cols=227 Identities=24% Similarity=0.302 Sum_probs=193.1
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-C-CCCceeEEEECCEeCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-H-SARMYGEVFVNGAKSE----- 178 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~-~-~~~~~G~I~~~G~~~~----- 178 (641)
++++||++.|.... +..++++||||++++||++||+|+|||||||+.++|.|+++ + ....+|+|.++|++..
T Consensus 2 L~v~nL~v~f~~~~-g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDA-GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCC-ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 68999999996532 24679999999999999999999999999999999999998 4 3336799999998631
Q ss_pred ----CCCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHH
Q 006548 179 ----MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 179 ----~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG 251 (641)
.+.+.+++++|++ .|.|.+||.+.+......+... ...+..+++.++|+.+||.+-..+. +.||++||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~---~~YPhelSGG 157 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRL---KSYPHELSGG 157 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHH---hhCCcccCCc
Confidence 1235799999995 7899999999998776654322 1223466789999999998654443 4589999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.++|++||+. ..+.++||||+||..|++|+.|
T Consensus 158 MrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE~g 236 (316)
T COG0444 158 MRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRIVEEG 236 (316)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEEeC
Confidence 99999999999999999999999999999999999999999996 599999987776 5899999999999999999999
Q ss_pred ChhHHHH
Q 006548 331 ETLACLQ 337 (641)
Q Consensus 331 ~~~~~~~ 337 (641)
+++++++
T Consensus 237 ~~~~i~~ 243 (316)
T COG0444 237 PVEEIFK 243 (316)
T ss_pred CHHHHhc
Confidence 9998764
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=351.89 Aligned_cols=213 Identities=30% Similarity=0.416 Sum_probs=182.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 181 (641)
++++|+++.|+++. ....+|+|+|+++++||+++|+|+||||||||+++|+|+++|++ |+|.++|++... .+
T Consensus 2 l~~~~v~~~~~~~~-~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 2 ITADALTKRFRDVK-KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA---GFATVDGFDVVKEPAEAR 77 (218)
T ss_pred eEEEEEEEecCCCC-ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEEECCEEcccCHHHHH
Confidence 67899999985321 11269999999999999999999999999999999999999875 999999987532 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++.+||+||+.+....+.. ...+..++++++++.+||.+..++.++ .||||||||++||||
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrv~lara 150 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGL-KGDELTARLEELADRLGMEELLDRRVG------GFSTGMRQKVAIARA 150 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHhhhhh------hcCHHHHHHHHHHHH
Confidence 4699999999999999999999876543211 111245678899999999988888654 999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ .++.++||++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999987799999998887 4788999999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=368.81 Aligned_cols=221 Identities=20% Similarity=0.244 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~------ 178 (641)
.++++||++.|+++......+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT---GTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEEeceecccccccc
Confidence 478999999996432223469999999999999999999999999999999999999875 99999986431
Q ss_pred -----------------------CCCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-
Q 006548 179 -----------------------MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS- 232 (641)
Q Consensus 179 -----------------------~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~- 232 (641)
...+.+|||+|++ .++ ..||+||+.|+.... .....+..++++++++.+||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~ 156 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM-GVSKEEAKKRAAKYIELVGLDE 156 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHcCCCh
Confidence 0124689999985 444 579999998875432 111123456789999999996
Q ss_pred hHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHH
Q 006548 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 312 (641)
Q Consensus 233 ~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~ 312 (641)
+..++.+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||+++|+. +++.
T Consensus 157 ~~~~~~~------~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~ 229 (305)
T PRK13651 157 SYLQRSP------FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL-DNVL 229 (305)
T ss_pred hhhhCCh------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH-HHHH
Confidence 6777654 59999999999999999999999999999999999999999999999987799999988886 4788
Q ss_pred hcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 313 GLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 313 ~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
++||||++|++|++++.|+++++..
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999988763
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=350.60 Aligned_cols=205 Identities=26% Similarity=0.364 Sum_probs=179.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 182 (641)
++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+... .++
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 72 (208)
T cd03268 1 LKTNDLTKTYG-----KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS---GEITFDGKSYQKNIEALR 72 (208)
T ss_pred CEEEEEEEEEC-----CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCCcccchHHHHh
Confidence 36899999884 3469999999999999999999999999999999999998875 999999986432 134
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++|++.+++.+||+||+.+...... ..+++++++++.+++.+..++.++ .|||||||||+|||+|
T Consensus 73 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrv~la~al 141 (208)
T cd03268 73 RIGALIEAPGFYPNLTARENLRLLARLLG-----IRKKRIDEVLDVVGLKDSAKKKVK------GFSLGMKQRLGIALAL 141 (208)
T ss_pred hEEEecCCCccCccCcHHHHHHHHHHhcC-----CcHHHHHHHHHHcCCHHHHhhhHh------hCCHHHHHHHHHHHHH
Confidence 69999999999999999999987654221 124568899999999988887654 9999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++ .++.++||++++|++|++++.|
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999987889999988887 4788899999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=351.00 Aligned_cols=209 Identities=25% Similarity=0.428 Sum_probs=180.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCceE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGSY 184 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-~~~~~ 184 (641)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... .++.+
T Consensus 1 l~~~~l~~~~~-----~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~i 72 (210)
T cd03269 1 LEVENVTKRFG-----RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDS---GEVLFDGKPLDIAARNRI 72 (210)
T ss_pred CEEEEEEEEEC-----CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCCchhHHHHccE
Confidence 46899999884 3469999999999999999999999999999999999998875 999999976432 23569
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHh
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (641)
+|++|+..+++.+||+||+.+....+.. ......+.++++++.+|+.+..++.+ ++||||||||++||++|+.
T Consensus 73 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~la~al~~ 145 (210)
T cd03269 73 GYLPEERGLYPKMKVIDQLVYLAQLKGL-KKEEARRRIDEWLERLELSEYANKRV------EELSKGNQQKVQFIAAVIH 145 (210)
T ss_pred EEeccCCcCCcCCcHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcCChHHHhCcH------hhCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999876543311 11123557889999999988877755 4999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 265 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|
T Consensus 146 ~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 146 DPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999999999987789999988887 4788899999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=376.39 Aligned_cols=206 Identities=26% Similarity=0.345 Sum_probs=181.4
Q ss_pred cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------CceEEEEcCCC
Q 006548 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------YGSYGFVERET 191 (641)
Q Consensus 121 ~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---------~~~~~yv~Q~~ 191 (641)
+.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|++ |+|.++|++.... ++.++||+|+.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~---G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTA---GQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCc---eEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 34579999999999999999999999999999999999999975 9999999875421 35799999999
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE
Q 006548 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFI 271 (641)
Q Consensus 192 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlL 271 (641)
.++|++||+||+.++..... ....+..+++.++++.+||.+..++.+ ..|||||||||+|||||+.+|++|||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~-~~~~~~~~~~~~~l~~vgL~~~~~~~p------~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLG-WPEQERKEKALELLKLVGLEEYEHRYP------DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCchhhhCCh------hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999998765431 111234567899999999998887755 49999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 272 DEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 272 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||||++||+.++..+.+.|++++++ |+|||+++|+. +++.++||+|++|++|+++..|+++++..
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 9999999999999999999999854 89999988887 57899999999999999999999988754
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-43 Score=371.17 Aligned_cols=224 Identities=23% Similarity=0.277 Sum_probs=189.3
Q ss_pred ceEEEEeEEEEEecccc--------cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 006548 104 ASVVWKDLTVTIKGKRR--------YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~--------~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~ 175 (641)
..++++||++.|..++. ....+|+|||+++++||+++|+|+||||||||+++|+|+++|++ |+|.++|+
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~---G~I~~~G~ 83 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATD---GEVAWLGK 83 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---cEEEECCE
Confidence 46899999999953211 13579999999999999999999999999999999999998865 99999998
Q ss_pred eCCC--------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHcCCc-hHHhhhhcCCC
Q 006548 176 KSEM--------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPG-FFCQRKNVVEDAIHAMSLS-DYANKLIGGHC 243 (641)
Q Consensus 176 ~~~~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~ 243 (641)
+... .++.++||+|++ .++|.+||.||+.+......+. ...+.+++++++++.+||. +..++
T Consensus 84 ~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~------ 157 (331)
T PRK15079 84 DLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINR------ 157 (331)
T ss_pred ECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcC------
Confidence 7532 124699999997 6889999999998865432111 1123456788999999994 45555
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
++++|||||||||+|||||+.+|++||+||||+|||+.++.+++++|+++.++ |.|+|+++|+. ..+.++||+|++|+
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl~ 236 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVMY 236 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 56699999999999999999999999999999999999999999999999865 89999988886 57889999999999
Q ss_pred CCeEEEEeChhHHHH
Q 006548 323 NGNTLFFGETLACLQ 337 (641)
Q Consensus 323 ~G~iv~~G~~~~~~~ 337 (641)
+|++++.|+++++.+
T Consensus 237 ~G~ive~g~~~~i~~ 251 (331)
T PRK15079 237 LGHAVELGTYDEVYH 251 (331)
T ss_pred CCEEEEEcCHHHHHc
Confidence 999999999887753
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-43 Score=368.81 Aligned_cols=221 Identities=20% Similarity=0.241 Sum_probs=185.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++|+++.|..+....+.+|+|+|+++++||++||+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~---G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY---GTIQVGDIYIGDKKNN 96 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECCEEccccccc
Confidence 4689999999995322123469999999999999999999999999999999999999875 999999976421
Q ss_pred -----------------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhh
Q 006548 180 -----------------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLI 239 (641)
Q Consensus 180 -----------------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~i 239 (641)
.++.++||+|++ .+++ .||+||+.++.... .....+..++++++++.+||. +..++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~- 173 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL-GVKKSEAKKLAKFYLNKMGLDDSYLERS- 173 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCChhHhcCC-
Confidence 124699999986 5665 59999998865321 111112345788999999996 566654
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEE
Q 006548 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (641)
Q Consensus 240 g~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (641)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ +++.++||+++
T Consensus 174 -----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~-~~~~~~adri~ 247 (320)
T PRK13631 174 -----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM-EHVLEVADEVI 247 (320)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEE
Confidence 459999999999999999999999999999999999999999999999987799999988886 47889999999
Q ss_pred EEeCCeEEEEeChhHHH
Q 006548 320 LLSNGNTLFFGETLACL 336 (641)
Q Consensus 320 vL~~G~iv~~G~~~~~~ 336 (641)
+|++|+++..|+++++.
T Consensus 248 vl~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 248 VMDKGKILKTGTPYEIF 264 (320)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999998875
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=359.15 Aligned_cols=216 Identities=28% Similarity=0.388 Sum_probs=183.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|.. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~----~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR02315 2 LEVENLSKVYPN----GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSS---GSILLEGTDITKLRGKKL 74 (243)
T ss_pred eEEEeeeeecCC----CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---cEEEECCEEhhhCCHHHH
Confidence 678999998841 3469999999999999999999999999999999999998875 999999987431
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhc------C-CCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQ------L-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~------~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG 250 (641)
.++.++|++|++.+++.+||+||+.++.... . .......++++.++++.+||.+..++.+ ..|||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSg 148 (243)
T TIGR02315 75 RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA------DQLSG 148 (243)
T ss_pred HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc------ccCCH
Confidence 1246999999999999999999997642110 0 0001123457889999999988777644 59999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|+++|++ +++.++||++++|++|++++.
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999999764 89999988887 478899999999999999999
Q ss_pred eChhHH
Q 006548 330 GETLAC 335 (641)
Q Consensus 330 G~~~~~ 335 (641)
|+++++
T Consensus 228 ~~~~~~ 233 (243)
T TIGR02315 228 GAPSEL 233 (243)
T ss_pred CCHHHh
Confidence 988764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=369.50 Aligned_cols=229 Identities=23% Similarity=0.274 Sum_probs=190.7
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++||++.|..++ +...+|+|||+++++||+++|+|+||||||||+++|+|+++|+...+|+|.++|+++..
T Consensus 11 ~~L~i~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecCC-CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 3689999999995321 23569999999999999999999999999999999999998852235999999987532
Q ss_pred -----CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHH
Q 006548 180 -----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 -----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (641)
..+.++||+|++ .++|.+|+.+++.+...........+..+++.++++.+||.+..+.. +.++++|||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~---~~~p~~LSgG~ 166 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRM---KMYPHEFSGGM 166 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHh---cCCcccCCHHH
Confidence 124699999997 68899999999977654332111122446788999999997543331 34778999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||+|||||+.+|++||+||||+|||+.++..++++|++++++ |.|+|+++|+. ..+.++||+|++|++|++++.|+
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999865 89999988887 47888999999999999999999
Q ss_pred hhHHHH
Q 006548 332 TLACLQ 337 (641)
Q Consensus 332 ~~~~~~ 337 (641)
++++.+
T Consensus 246 ~~~i~~ 251 (330)
T PRK09473 246 ARDVFY 251 (330)
T ss_pred HHHHHh
Confidence 988764
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=360.63 Aligned_cols=216 Identities=26% Similarity=0.318 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|+++.|+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 4 ~l~~~~l~~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 4 IIEVEDLHFRYKD----GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR---GRVKVMGREVNAENEKW 76 (274)
T ss_pred eEEEEEEEEEeCC----CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---eEEEECCEECCCCCHHH
Confidence 5899999999842 2469999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 181 -YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.+.++|++|++. .++..||.||+.|+..... ......+++++++++.+||.+..++.+ ..|||||||||+|
T Consensus 77 ~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~LSgG~~qrv~l 149 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMG-LDKDEVERRVEEALKAVRMWDFRDKPP------YHLSYGQKKRVAI 149 (274)
T ss_pred HHhhEEEEecChhhhhccCcHHHHHHhhHHHcC-CCHHHHHHHHHHHHHHCCCHHHhcCCh------hhCCHHHHHHHHH
Confidence 246999999963 3456899999988643221 111123456889999999988887755 4999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++++.|+++++
T Consensus 150 araL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 150 AGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999999999987799999988887 478889999999999999999998653
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=355.84 Aligned_cols=217 Identities=23% Similarity=0.408 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (241)
T PRK10895 3 TLTAKNLAKAYK-----GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA---GNIIIDDEDISLLPLHA 74 (241)
T ss_pred eEEEeCcEEEeC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHHH
Confidence 478999999984 3469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.++.++|++|++.+++.+||+||+.+...........+.+.+++++++.+|+.+..++.+ +.|||||||||+|
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~l 148 (241)
T PRK10895 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG------QSLSGGERRRVEI 148 (241)
T ss_pred HHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcch------hhCCHHHHHHHHH
Confidence 124699999999999999999999875432211111123456889999999988776654 4999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 9999999999999999999999999999999999987799999998887 4788999999999999999999887654
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=352.35 Aligned_cols=208 Identities=29% Similarity=0.369 Sum_probs=176.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|++.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 76 (218)
T cd03255 1 IELKNLSKTYGGGG-EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTS---GEVRVDGTDISKLSEKEL 76 (218)
T ss_pred CeEeeeEEEecCCC-cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCc---eeEEECCEehhhcchhHH
Confidence 46899999985311 11579999999999999999999999999999999999998875 999999987532
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
..+.++|++|++.+++.+||+||+.+....+.. .....+++++++++.+||.+..++.+ +.|||||||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv 149 (218)
T cd03255 77 AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGV-PKKERRERAEELLERVGLGDRLNHYP------SELSGGQQQRV 149 (218)
T ss_pred HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHcCCchhhhcCh------hhcCHHHHHHH
Confidence 124699999999999999999999887543311 11123457889999999988887755 49999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++. +||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999987 5899999999875 565 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-43 Score=355.40 Aligned_cols=216 Identities=26% Similarity=0.426 Sum_probs=184.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 180 (641)
++++|+++.|.+ .+.+|+|+|+.+++||+++|+||||||||||+++|+|+++|+. |+|.++|.+... .
T Consensus 1 l~~~~l~~~~~~----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 1 IEFENVTKRYGG----GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTS---GEIFIDGEDIREQDPVEL 73 (242)
T ss_pred CEEEEEEEEeCC----cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCeEcCcCChHHh
Confidence 368899998842 1469999999999999999999999999999999999998875 999999986432 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch--HHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD--YANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.+.++|++|++.+++.+||+||+.+...... .......+++.++++.+||.+ ..++.+ ..|||||||||+|
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~------~~LS~G~~qrv~l 146 (242)
T cd03295 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLK-WPKEKIRERADELLALVGLDPAEFADRYP------HELSGGQQQRVGV 146 (242)
T ss_pred hcceEEEccCccccCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCCcHHHHhcCh------hhCCHHHHHHHHH
Confidence 2468999999999999999999987654321 111223456889999999985 666644 5999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.++||++++|++|++++.|++++..
T Consensus 147 aral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 147 ARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999865 899999999874 788999999999999999999887653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=355.66 Aligned_cols=217 Identities=22% Similarity=0.328 Sum_probs=182.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~---- 179 (641)
++++||++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|+. ..+|+|.++|++...
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~ 76 (247)
T TIGR00972 2 IEIENLNLFYG-----EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76 (247)
T ss_pred EEEEEEEEEEC-----CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccc
Confidence 68999999984 2469999999999999999999999999999999999998750 014999999987532
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc----hHHhhhhcCCCCCCCCCHHH
Q 006548 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~~LSGGe 252 (641)
.++.++|++|+..+++ +|++||+.+....+......+..++++++++.+||. +..++ .++.|||||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LSgG~ 149 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHD------SALGLSGGQ 149 (247)
T ss_pred hHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhC------CcccCCHHH
Confidence 1246999999998888 999999988654321011112345688999999997 55555 445999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ +|+|+++|++ +++.++||++++|++|++++.|++
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 227 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNM-QQAARISDRTAFFYDGELVEYGPT 227 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999874 8999988887 478899999999999999999998
Q ss_pred hHHH
Q 006548 333 LACL 336 (641)
Q Consensus 333 ~~~~ 336 (641)
+++.
T Consensus 228 ~~~~ 231 (247)
T TIGR00972 228 EQIF 231 (247)
T ss_pred HHHH
Confidence 7754
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=362.36 Aligned_cols=214 Identities=25% Similarity=0.330 Sum_probs=183.3
Q ss_pred EEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------
Q 006548 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------- 179 (641)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------- 179 (641)
.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 26 ~~~~~~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~---G~i~i~g~~~~~~~~~~~~ 97 (269)
T cd03294 26 SKEEILKKTG-----QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTS---GKVLIDGQDIAAMSRKELR 97 (269)
T ss_pred hhhhhhhhcC-----CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEccccChhhhh
Confidence 5567777663 4579999999999999999999999999999999999999875 999999986431
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
..+.++|++|++.+++.+||+||+.+....... ......++++++++.+||.+..++.+ .+|||||||||+
T Consensus 98 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~Gq~qrv~ 170 (269)
T cd03294 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGV-PRAEREERAAEALELVGLEGWEHKYP------DELSGGMQQRVG 170 (269)
T ss_pred hhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCHhHhhCCc------ccCCHHHHHHHH
Confidence 124699999999999999999999886543211 11123456889999999998888755 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 171 lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 171 LARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999754 89999988887 4788999999999999999999987764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=349.04 Aligned_cols=218 Identities=25% Similarity=0.332 Sum_probs=192.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++.+||++++ +...+++|||+++++||+++|+||||||||||+|+|+|.++|++ |+|.++|+++...
T Consensus 4 lL~v~~l~k~F-----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~---G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 4 LLEVRGLSKRF-----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSS---GTVIFRGRDITGLPPHR 75 (250)
T ss_pred eeeeccceeec-----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCC---ceEEECCcccCCCCHHH
Confidence 57899999998 46789999999999999999999999999999999999999986 9999999976421
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhc--------CCCc---cchHHHHHHHHHHHcCCchHHhhhhcCCCCCCC
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQ--------LPGF---FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~--------~~~~---~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~ 247 (641)
+..++.-+|...+|+.|||.||+..++..+ .+.. ..+..++..++|+.+||.+.+++..+ +
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~------~ 149 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG------N 149 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh------c
Confidence 245788899999999999999998875533 1211 12345678899999999999999776 9
Q ss_pred CCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
||+|||||+.|||||+.+|++|+||||.+||.+....++.+.|++++++ |.||+++-|+ +..++.+||||+||+.|++
T Consensus 150 LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHd-M~~Vm~l~dri~Vl~~G~~ 228 (250)
T COG0411 150 LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHD-MKLVMGLADRIVVLNYGEV 228 (250)
T ss_pred CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEec-cHHHhhhccEEEeccCCcC
Confidence 9999999999999999999999999999999999999999999999975 6888886555 5799999999999999999
Q ss_pred EEEeChhHHHH
Q 006548 327 LFFGETLACLQ 337 (641)
Q Consensus 327 v~~G~~~~~~~ 337 (641)
+.+|+|+++.+
T Consensus 229 IAeG~P~eV~~ 239 (250)
T COG0411 229 IAEGTPEEVRN 239 (250)
T ss_pred cccCCHHHHhc
Confidence 99999999864
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=354.84 Aligned_cols=215 Identities=24% Similarity=0.310 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.+.++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 73 (242)
T PRK11124 2 SIQLNGINCFYG-----AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRS---GTLNIAGNHFDFSKTPS 73 (242)
T ss_pred EEEEEeeEEEEC-----CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEecccccccc
Confidence 478999999984 3469999999999999999999999999999999999998875 999999986420
Q ss_pred ------CCceEEEEcCCCccCCCCCHHHHHHHHH-HhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHH
Q 006548 180 ------PYGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (641)
.++.++|++|++.+++.+||.||+.+.. ... .....+..+++.++++.+|+.+..++.+ ..|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~ 146 (242)
T PRK11124 74 DKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL-GLSKDQALARAEKLLERLRLKPYADRFP------LHLSGGQ 146 (242)
T ss_pred hhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHH
Confidence 1246899999999999999999997532 221 1111123456889999999988877755 4999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ .++.++||++++|++|++++.|++
T Consensus 147 ~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~~~ 225 (242)
T PRK11124 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987799999988887 477889999999999999999987
Q ss_pred hHH
Q 006548 333 LAC 335 (641)
Q Consensus 333 ~~~ 335 (641)
++.
T Consensus 226 ~~~ 228 (242)
T PRK11124 226 SCF 228 (242)
T ss_pred HHh
Confidence 653
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=356.99 Aligned_cols=217 Identities=24% Similarity=0.262 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|. .+.+|+|+|+.+++||+++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 5 KLNVIDLHKRYG-----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE---GSIVVNGQTINLVRDKD 76 (257)
T ss_pred cEEEeeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEcccccccc
Confidence 589999999984 3469999999999999999999999999999999999998875 999999976421
Q ss_pred -------------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHH-hhhhcCCCCC
Q 006548 180 -------------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYA-NKLIGGHCYM 245 (641)
Q Consensus 180 -------------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~ 245 (641)
..+.++|++|++.+++.+||+||+.++............++++.++++.+|+.+.. ++. +
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~ 150 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKY------P 150 (257)
T ss_pred cccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCC------c
Confidence 12469999999999999999999987542111111122456788999999998764 553 4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++..+|||+++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGK 229 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999999987799999988887 47888999999999999
Q ss_pred EEEEeChhHHH
Q 006548 326 TLFFGETLACL 336 (641)
Q Consensus 326 iv~~G~~~~~~ 336 (641)
+++.|++++..
T Consensus 230 i~~~~~~~~~~ 240 (257)
T PRK10619 230 IEEEGAPEQLF 240 (257)
T ss_pred EEEeCCHHHhh
Confidence 99999887654
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-43 Score=348.25 Aligned_cols=206 Identities=26% Similarity=0.304 Sum_probs=176.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++|+++.|++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 1 l~~~~l~~~~~~----~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 1 IEFINVTKTYPN----GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTS---GTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred CEEEEEEEEeCC----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcccCCHHHH
Confidence 368899998842 2469999999999999999999999999999999999998875 999999987532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.++.++|++|++.+++.+|++||+.+....+. ....+..++++++++.+|+.+..++.+ .+||||||||++
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~ 146 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG-VPPREIRKRVPAALELVGLSHKHRALP------AELSGGEQQRVA 146 (214)
T ss_pred HHHHHheEEEecCchhccCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHhhCCh------hhcCHHHHHHHH
Confidence 12469999999999999999999988654321 111123456889999999988877754 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ .++.++||++++|++|++
T Consensus 147 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 147 IARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999987789999988887 478889999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=362.90 Aligned_cols=221 Identities=21% Similarity=0.272 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|..+....+.+|+|||+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT---GTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEECccccccc
Confidence 478999999995322123569999999999999999999999999999999999999875 999999987532
Q ss_pred ----CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHH
Q 006548 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGe 252 (641)
.++.+|||+|++ .+++ .||.||+.++..... ....+..++++++++.+||. +..++. ++.|||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~~LSgGq 150 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFK-MNLDEVKNYAHRLLMDLGFSRDVMSQS------PFQMSGGQ 150 (286)
T ss_pred hHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcC-CCHHHHHHHHHHHHHHcCCChhhhhCC------cccCCHHH
Confidence 124699999985 4555 599999988653321 11112456788999999996 666664 45999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|+|||+++|+. +++.++||++++|++|++++.|+
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~g~ 229 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVSQTS 229 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999985 489999998887 47889999999999999999999
Q ss_pred hhHHHH
Q 006548 332 TLACLQ 337 (641)
Q Consensus 332 ~~~~~~ 337 (641)
++++..
T Consensus 230 ~~~~~~ 235 (286)
T PRK13646 230 PKELFK 235 (286)
T ss_pred HHHHHh
Confidence 988654
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=367.08 Aligned_cols=223 Identities=20% Similarity=0.224 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEecccc-----cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC
Q 006548 105 SVVWKDLTVTIKGKRR-----YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~-----~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~ 179 (641)
.++++||++.|..+.. ....+|+|||+++++||++||+|+||||||||+++|+|++++.+ |+|.++|++...
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~---G~i~~~g~~l~~ 81 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTG---GELYYQGQDLLK 81 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCC---cEEEECCEEcCc
Confidence 5899999999963211 13579999999999999999999999999999999999998864 999999987532
Q ss_pred --------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCC
Q 006548 180 --------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGL 248 (641)
Q Consensus 180 --------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~L 248 (641)
.++.++||+|++ .++|.+||.+++.+...........+.++++.++++.+||.+ ..++ ++++|
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~------~p~~L 155 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDR------YPHMF 155 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcC------CCccC
Confidence 124699999997 689999999999876543311111234567899999999963 5555 56699
Q ss_pred CHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 006548 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (641)
Q Consensus 249 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (641)
||||||||+|||||+.+|++||+||||+|||..++..++++|++++++ |.|+|+++|+. ..+.++||+|++|++|+++
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 89999988876 5788899999999999999
Q ss_pred EEeChhHHHH
Q 006548 328 FFGETLACLQ 337 (641)
Q Consensus 328 ~~G~~~~~~~ 337 (641)
+.|+++++.+
T Consensus 235 e~g~~~~~~~ 244 (327)
T PRK11308 235 EKGTKEQIFN 244 (327)
T ss_pred EECCHHHHhc
Confidence 9999988754
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=362.02 Aligned_cols=221 Identities=21% Similarity=0.217 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.+.++||++.|.+.....+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS---GTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEECccccccc
Confidence 478999999985321112569999999999999999999999999999999999999975 999999987521
Q ss_pred ----CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHH
Q 006548 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGe 252 (641)
.++.++|++|++ .++ .+||.||+.++..... ....+..++++++++.+||. +..++.+ +.|||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~~------~~LSgGq 150 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFG-FSEDEAKEKALKWLKKVGLSEDLISKSP------FELSGGQ 150 (287)
T ss_pred hHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCChhHhhCCc------ccCCHHH
Confidence 124699999996 355 5899999987654321 11112345688999999997 6777754 4999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||++++|++|+++..|++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987799999988876 578899999999999999999998
Q ss_pred hHHHH
Q 006548 333 LACLQ 337 (641)
Q Consensus 333 ~~~~~ 337 (641)
+++.+
T Consensus 230 ~~~~~ 234 (287)
T PRK13641 230 KEIFS 234 (287)
T ss_pred HHHhc
Confidence 87653
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=360.51 Aligned_cols=219 Identities=23% Similarity=0.296 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 4 IIEVKNLTFKYKED--QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES---GQIIIDGDLLTEENVWD 78 (279)
T ss_pred eEEEEeEEEEcCCC--CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEECCcCcHHH
Confidence 58999999999521 12459999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 PYGSYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 ~~~~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
..+.++|++|++ ..++..||+||+.++.... .....+..++++++++.+||.+..++.+ ..||||||||++|
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGq~qrv~l 151 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFVGATVEDDVAFGLENK-GIPHEEMKERVNEALELVGMQDFKEREP------ARLSGGQKQRVAI 151 (279)
T ss_pred HHhhceEEEcChHHhcccccHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCCHhHhhCCc------ccCCHHHHHHHHH
Confidence 124689999997 4667789999998865332 1111224567899999999998887754 4999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|++. ++ ..||++++|++|+++..|+++++..
T Consensus 152 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 152 AGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHHc
Confidence 99999999999999999999999999999999999865 999999999975 56 5799999999999999999988753
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=366.90 Aligned_cols=228 Identities=21% Similarity=0.225 Sum_probs=187.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~-~~~G~I~~~G~~~~~---- 179 (641)
.++++||++.|..++ ....+|+||||++++||++||+|+||||||||+++|+|++++.. ..+|+|.++|++...
T Consensus 3 ~L~v~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDES-APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCC-ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 479999999995321 22469999999999999999999999999999999999987421 246999999987532
Q ss_pred -----CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHH
Q 006548 180 -----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 -----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (641)
..+.++||+|++ .++|.+||.+++.............+.++++.++++.+||.+..+.. +.++++|||||
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l---~~~p~~LSgGq 158 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRL---DVYPHQLSGGM 158 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHH---hCCchhCCHHH
Confidence 113699999997 58899999999876554321111123456789999999997532221 23667999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||+|||||+.+|++||+||||+|||+.++.+++++|+++++ .|.|+|+++|+. ..+.++||+|++|++|++++.|+
T Consensus 159 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~ive~g~ 237 (326)
T PRK11022 159 SQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQVVETGK 237 (326)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999986 589999988887 47889999999999999999999
Q ss_pred hhHHHH
Q 006548 332 TLACLQ 337 (641)
Q Consensus 332 ~~~~~~ 337 (641)
++++.+
T Consensus 238 ~~~~~~ 243 (326)
T PRK11022 238 AHDIFR 243 (326)
T ss_pred HHHHhh
Confidence 988754
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=355.08 Aligned_cols=212 Identities=26% Similarity=0.331 Sum_probs=182.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 185 (641)
++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+.......++
T Consensus 2 l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYG-----GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQH---GSITLDGKPVEGPGAERG 73 (255)
T ss_pred EEEEEEEEEeC-----CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCCcEE
Confidence 68999999884 2469999999999999999999999999999999999998875 999999987643334689
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC
Q 006548 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (641)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (641)
|++|++.+++.+||+||+.+...... .......++++++++.+||.+..++.+ ..|||||||||+|||+|+.+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAG-VEKMQRLEIAHQMLKKVGLEGAEKRYI------WQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCChhHhhCCh------hhCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999987643321 111123456889999999988777654 49999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEe--CCeEEEEeChh
Q 006548 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETL 333 (641)
Q Consensus 266 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~--~G~iv~~G~~~ 333 (641)
|++|||||||+|||+.++..+.+.|+++++ +|+|||+++|++ +++.++||++++|+ +|+++..++.+
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999999999999964 589999988887 47889999999998 59999887653
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=347.62 Aligned_cols=205 Identities=24% Similarity=0.331 Sum_probs=176.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++|+++.+++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~----~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (214)
T TIGR02673 2 IEFHNVSKAYPG----GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSR---GQVRIAGEDVNRLRGRQL 74 (214)
T ss_pred EEEEeeeEEeCC----CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcccCCHHHH
Confidence 689999999841 2469999999999999999999999999999999999998875 999999987532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
..+.++|++|++.+++.+||+||+.+...... ......+++++++++.++|.+..++.+ ..|||||||||+
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~ 147 (214)
T TIGR02673 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG-KKEREIQRRVGAALRQVGLEHKADAFP------EQLSGGEQQRVA 147 (214)
T ss_pred HHHHhheEEEecChhhccCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHHH
Confidence 12469999999999999999999988654321 111123467889999999988777654 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ +++.++||++++|++|+
T Consensus 148 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999999987789999998887 47888999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=356.67 Aligned_cols=208 Identities=26% Similarity=0.355 Sum_probs=182.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+.....+.
T Consensus 11 ~~l~i~~l~~~~~-----~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~---G~i~~~g~~~~~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYG-----ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSA---GELLAGTAPLAEARED 82 (257)
T ss_pred CcEEEEEEEEEEC-----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEHHHhhCc
Confidence 3589999999984 3469999999999999999999999999999999999999875 9999999875433457
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~ 263 (641)
++|++|++.+++.+||+||+.+... . ..++++.++++.+||.+..++.+ ..|||||||||+|||+|+
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~----~---~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGqkqrl~laraL~ 149 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLK----G---QWRDAALQALAAVGLADRANEWP------AALSGGQKQRVALARALI 149 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhccc----c---hHHHHHHHHHHHcCChhHhcCCh------hhCCHHHHHHHHHHHHHh
Confidence 9999999999998999999987421 1 12456789999999988777754 499999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 264 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.++||++++|++|++++.|+.+
T Consensus 150 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999975 5899999888874 778899999999999999888653
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=354.88 Aligned_cols=216 Identities=25% Similarity=0.338 Sum_probs=184.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 72 (252)
T TIGR03005 1 VRFSDVTKRFG-----ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDE---GQIQVEGEQLYHMPGRNG 72 (252)
T ss_pred CEEEEEEEEeC-----CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccccccc
Confidence 46899999984 2469999999999999999999999999999999999998875 999999986521
Q ss_pred ------------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCC
Q 006548 180 ------------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (641)
Q Consensus 180 ------------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~ 247 (641)
..+.++|++|++.+++.+||.||+.++.............+.++++++.+|+.+..++.+ ..
T Consensus 73 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~ 146 (252)
T TIGR03005 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP------AQ 146 (252)
T ss_pred cccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh------hh
Confidence 134699999999999999999999875322111111123456889999999988877754 59
Q ss_pred CCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|+++|++ .++..+||++++|++|++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i 225 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDKGRI 225 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865 89999998887 478889999999999999
Q ss_pred EEEeChhHHH
Q 006548 327 LFFGETLACL 336 (641)
Q Consensus 327 v~~G~~~~~~ 336 (641)
++.|+.+++.
T Consensus 226 ~~~g~~~~~~ 235 (252)
T TIGR03005 226 VEQGKPDEIF 235 (252)
T ss_pred EEeCCHHHHh
Confidence 9999887653
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=347.08 Aligned_cols=206 Identities=27% Similarity=0.342 Sum_probs=176.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03262 1 IEIKNLHKSFG-----DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS---GTIIIDGLKLTDDKKNIN 72 (213)
T ss_pred CEEEEEEEEEC-----CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCccchhHH
Confidence 36899999984 2469999999999999999999999999999999999998875 999999987531
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
..+.++|++|++.+++.+|++||+.+...........+..++++++++.+|+.+..++.+ ++||||||||++|
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~l 146 (213)
T cd03262 73 ELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP------AQLSGGQQQRVAI 146 (213)
T ss_pred HHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc------cccCHHHHHHHHH
Confidence 124699999999999999999999876431111111123456889999999988877754 4999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ +++.++||++++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999987789999988887 578899999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=350.30 Aligned_cols=215 Identities=26% Similarity=0.381 Sum_probs=183.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 181 (641)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+... ..
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 2 LEVAGLSFAYG-----ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQE---GQISVAGHDLRRAPRAAL 73 (236)
T ss_pred EEEEeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCEEcccCChhhh
Confidence 67899999884 3469999999999999999999999999999999999999875 999999986432 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++.+|++||+.+....+. .......+.++++++.+||.+..++.+ ..||||||||++||||
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~~qrl~lara 146 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHG-LSRAEARERIAALLARLGLAERADDKV------RELNGGHRRRVEIARA 146 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCChhhhcCCh------hhCCHHHHHHHHHHHH
Confidence 469999999988889999999987654321 111123456789999999988777755 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|+|+++|++. ++. .||++++|++|+++..|+++++.+
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 9999999999999999999999999999999985 5899999999875 565 499999999999999998876654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=352.05 Aligned_cols=214 Identities=19% Similarity=0.288 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 76 (237)
T PRK11614 5 MLSFDKVSAHYG-----KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATS---GRIVFDGKDITDWQTAK 76 (237)
T ss_pred EEEEEeEEEeeC-----CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---ceEEECCEecCCCCHHH
Confidence 589999999884 3569999999999999999999999999999999999999875 999999987532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHc-CCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-SLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
..+.++|++|+..+++.+||.||+.++.... . .....+.++++++.+ ++.+..++. +..||||||||++
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~-~~~~~~~~~~~l~~~~~l~~~~~~~------~~~LS~G~~qrl~ 147 (237)
T PRK11614 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFA--E-RDQFQERIKWVYELFPRLHERRIQR------AGTMSGGEQQMLA 147 (237)
T ss_pred HHHhCEEEeccCcccCCCCcHHHHHHHhhhcc--C-hhHHHHHHHHHHHHHHHHHHHHhCc------hhhCCHHHHHHHH
Confidence 1246999999999999999999998754221 1 112334567778887 476666554 4599999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 148 la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 148 IGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 99999999999999999999999999999999999987799999988887 4788999999999999999999988764
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=360.06 Aligned_cols=264 Identities=23% Similarity=0.303 Sum_probs=219.3
Q ss_pred EEEeCccccccccCCCCcccccccCCCCCCCCCCcchhhhhccCCceEEEEeEEEEEecccc------cccceeeceeeE
Q 006548 59 RVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR------YSDKVVKSSNGY 132 (641)
Q Consensus 59 ~v~e~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~ 132 (641)
.++|.|.+...++.|.||||+.+.++.+...+.+... -.+..++.+|+.+.|+.++. ...+++++||++
T Consensus 235 ~ivE~~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~-----~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~ 309 (534)
T COG4172 235 EIVETGTTETLFAAPQHPYTRKLLAAEPSGDPPPLPE-----DAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLT 309 (534)
T ss_pred EEeecCcHHHHhhCCCChHHHHHHhcCCCCCCCCCCC-----CCCceEEecceEEEEecCCccccccchheEEeccceeE
Confidence 3688899999999999999999977533222221111 12457899999999875531 235799999999
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--------CCceEEEEcCCC--ccCCCCCHHHH
Q 006548 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--------PYGSYGFVERET--TLIGSLTVREY 202 (641)
Q Consensus 133 i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~--------~~~~~~yv~Q~~--~l~~~lTV~E~ 202 (641)
+++||.++|+|+||||||||-.+|.+++++. |+|.++|+++.. .++++-.|+||+ .|.|.+||.+.
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~----G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qI 385 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ----GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQI 385 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC----ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHH
Confidence 9999999999999999999999999999874 999999987531 134577888886 68999999999
Q ss_pred HHHHHHhcCCCc-cchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHH
Q 006548 203 LYYSALLQLPGF-FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (641)
Q Consensus 203 l~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~ 281 (641)
+..+...+-+.. ..++++++.++|+++||+.... +.||+++|||||||++||||++.+|++++||||||+||-.
T Consensus 386 I~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r-----~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~S 460 (534)
T COG4172 386 IEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR-----NRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRS 460 (534)
T ss_pred hhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh-----hcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHH
Confidence 999887765432 2347889999999999975332 3478899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 282 SALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 282 ~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
-+.+|+++|++|.+ .|.+-++++|+. ..+..+||+|+||++|+||+.|+++++++
T Consensus 461 VQaQvv~LLr~LQ~k~~LsYLFISHDL-~VvrAl~~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 461 VQAQVLDLLRDLQQKHGLSYLFISHDL-AVVRALCHRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence 99999999999985 599999977765 68999999999999999999999998865
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-43 Score=347.02 Aligned_cols=201 Identities=21% Similarity=0.327 Sum_probs=172.1
Q ss_pred EEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEE
Q 006548 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYG 185 (641)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~--~~~~~~ 185 (641)
++|+++.|.+ .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|.+... ..+.++
T Consensus 2 ~~~l~~~~~~----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~i~ 74 (205)
T cd03226 2 IENISFSYKK----GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS---GSILLNGKPIKAKERRKSIG 74 (205)
T ss_pred cccEEEEeCC----cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEhhhHHhhcceE
Confidence 6788988842 1569999999999999999999999999999999999999875 999999987522 234699
Q ss_pred EEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHh
Q 006548 186 FVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (641)
Q Consensus 186 yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (641)
|++|++. .+..+||+||+.+..... . ...++++++++.+||.+..++.+ ..||||||||++|||||+.
T Consensus 75 ~~~q~~~~~~~~~tv~e~l~~~~~~~--~---~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~laral~~ 143 (205)
T cd03226 75 YVMQDVDYQLFTDSVREELLLGLKEL--D---AGNEQAETVLKDLDLYALKERHP------LSLSGGQKQRLAIAAALLS 143 (205)
T ss_pred EEecChhhhhhhccHHHHHhhhhhhc--C---ccHHHHHHHHHHcCCchhcCCCc------hhCCHHHHHHHHHHHHHHh
Confidence 9999974 334679999998754321 1 12356889999999988877754 4999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 006548 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (641)
Q Consensus 265 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (641)
+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ +++.++||++++|++|+++
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 144 GKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999987799999998887 4788899999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=348.76 Aligned_cols=215 Identities=24% Similarity=0.268 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||++.|+.+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++....
T Consensus 5 ~l~~~~l~~~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 5 LLQCDNLCKRYQEGS-VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS---GDVIFNGQPMSKLSSAA 80 (233)
T ss_pred eEEEEeEEEEcCCCC-cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcCcCCHHH
Confidence 589999999985311 12469999999999999999999999999999999999998875 9999999875321
Q ss_pred -----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.+.++|++|+..+++.+||+||+.+...... ....+.+++++++++.+||.+..++.+ ..||||||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgG~~qr 153 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK-KKPAEINSRALEMLAAVGLEHRANHRP------SELSGGERQR 153 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHH
Confidence 1469999999999999999999988654321 111123457889999999988777654 4999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++.. +|++++|++|+++..|+.
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999999999975 5899999999874 5655 579999999999988763
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=354.78 Aligned_cols=217 Identities=22% Similarity=0.291 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+....
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 5 LLSVSGLMMRFG-----GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTG---GTILLRGQHIEGLPGHQ 76 (255)
T ss_pred eEEEeeEEEEEC-----CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCc---ceEEECCEECCCCCHHH
Confidence 589999999884 3469999999999999999999999999999999999999875 9999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcC-----------CC---ccchHHHHHHHHHHHcCCchHHhhhhcCCCC
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQL-----------PG---FFCQRKNVVEDAIHAMSLSDYANKLIGGHCY 244 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-----------~~---~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 244 (641)
...++|++|++.+++.+||+||+.++..... +. ...+..+.++++++.+||.+..++.+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 151 (255)
T PRK11300 77 IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA----- 151 (255)
T ss_pred HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh-----
Confidence 2358999999999999999999988643110 00 00012346788899999988777755
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 245 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
+.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++
T Consensus 152 -~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 152 -GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQ 229 (255)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 499999999999999999999999999999999999999999999999875 89999988887 478899999999999
Q ss_pred CeEEEEeChhHHH
Q 006548 324 GNTLFFGETLACL 336 (641)
Q Consensus 324 G~iv~~G~~~~~~ 336 (641)
|++++.|+++++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999987653
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=346.08 Aligned_cols=207 Identities=29% Similarity=0.420 Sum_probs=177.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----C
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----Y 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----~ 181 (641)
++++|+++.+. .+.+|+|+|+++++| +++|+||||||||||+++|+|+++|++ |+|.++|.+.... .
T Consensus 1 i~~~~~~~~~~-----~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 71 (211)
T cd03264 1 LQLENLTKRYG-----KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSS---GTIRIDGQDVLKQPQKLR 71 (211)
T ss_pred CEEEEEEEEEC-----CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCCccccchHHHH
Confidence 46899999884 246999999999999 999999999999999999999999875 9999999764321 3
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++.+||+||+.+....... ...+..++++++++.+||.+..++.+ ..|||||||||+||||
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~la~a 144 (211)
T cd03264 72 RRIGYLPQEFGVYPNFTVREFLDYIAWLKGI-PSKEVKARVDEVLELVNLGDRAKKKI------GSLSGGMRRRVGIAQA 144 (211)
T ss_pred hheEEecCCCcccccCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHCCCHHHHhCch------hhCCHHHHHHHHHHHH
Confidence 5689999999999999999999876543311 11123456889999999988877755 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++ +++.++||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999986 58999988887 4788899999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=347.84 Aligned_cols=214 Identities=27% Similarity=0.304 Sum_probs=176.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|.++. ....+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|++...
T Consensus 2 l~~~~v~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 2 LEVKNLSVSFPTGG-GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTS---GSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred eEEEeeeEeccCCC-cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEccccchhhH
Confidence 67899999984311 11369999999999999999999999999999999999998875 999999987532
Q ss_pred --CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHH-HHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHH
Q 006548 180 --PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNV-VEDAIHAMSLS-DYANKLIGGHCYMKGLPCGER 253 (641)
Q Consensus 180 --~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGer 253 (641)
.++.++|++|++ .+++.+||+||+.+..............+. ++++++.+++. +..++.+ ..||||||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LS~G~~ 151 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYP------HELSGGQR 151 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCc------hhcCHHHH
Confidence 124699999998 567789999999876543221111111122 35889999995 5666644 49999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|+++..|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999999999866 89999998887 4788899999999999998654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=351.12 Aligned_cols=216 Identities=23% Similarity=0.339 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.++ .+++|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 ~i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 2 ILYLEGLSVSFD-----GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDE---GSVLFGGTDLTGLPEHQ 73 (242)
T ss_pred eEEEEeeEEEcC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECCeecCCCCHHH
Confidence 478999999984 2469999999999999999999999999999999999998875 999999986532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-------CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-------GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG 251 (641)
..+.++|++|++.+++.+||+||+.+....... ......+++++++++.+|+.+..++.+ +.||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G 147 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA------GLLSHG 147 (242)
T ss_pred HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHH
Confidence 123599999999999999999999886432100 001123456889999999988777655 499999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|+++..|+
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~ 225 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGS 225 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCC
Confidence 99999999999999999999999999999999999999999976 68999988887 47889999999999999999998
Q ss_pred hhHHH
Q 006548 332 TLACL 336 (641)
Q Consensus 332 ~~~~~ 336 (641)
++++.
T Consensus 226 ~~~~~ 230 (242)
T TIGR03411 226 LDQVQ 230 (242)
T ss_pred HHHHh
Confidence 77653
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=350.93 Aligned_cols=223 Identities=21% Similarity=0.259 Sum_probs=181.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~-- 179 (641)
+.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +....+|+|.++|++...
T Consensus 5 ~~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 5 PKMEARGLSFFYG-----DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred cEEEEeeeEEEEC-----CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 4689999999984 2469999999999999999999999999999999999864 100135999999987531
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
.++.++|++|++.+++ .||+||+.+....+.........++++++++.+++.+...... +..++.|||||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LSgGq~q 156 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRL--HESALGLSGGQQQ 156 (253)
T ss_pred cCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHh--hCCcccCCHHHHH
Confidence 1246999999998887 5999999886543211111123456888999999864322222 2355699999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|++|+++..|++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGPTEQ 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999954 78999988887 47889999999999999999998876
Q ss_pred HH
Q 006548 335 CL 336 (641)
Q Consensus 335 ~~ 336 (641)
+.
T Consensus 235 ~~ 236 (253)
T PRK14242 235 IF 236 (253)
T ss_pred HH
Confidence 53
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=356.74 Aligned_cols=221 Identities=22% Similarity=0.269 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|++.+...+++|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ---GSVRVDDTLITSTSKNK 78 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccccccc
Confidence 478999999985321112469999999999999999999999999999999999999875 999999987532
Q ss_pred ----CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHH
Q 006548 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGe 252 (641)
.++.++|++|++ .+++ .||+||+.+...... ....+..++++++++.+||. +..++.+ ..|||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG~ 150 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFG-VSQEEAEALAREKLALVGISESLFEKNP------FELSGGQ 150 (280)
T ss_pred CHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCChhhhhCCc------ccCCHHH
Confidence 124689999996 4554 699999987643221 11112345678899999997 4566644 4999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|+++..|++
T Consensus 151 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 229 (280)
T PRK13649 151 MRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLSGKP 229 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987789999998887 478889999999999999999998
Q ss_pred hHHHH
Q 006548 333 LACLQ 337 (641)
Q Consensus 333 ~~~~~ 337 (641)
+++.+
T Consensus 230 ~~~~~ 234 (280)
T PRK13649 230 KDIFQ 234 (280)
T ss_pred HHHhc
Confidence 87643
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=346.06 Aligned_cols=207 Identities=24% Similarity=0.321 Sum_probs=177.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 74 (222)
T PRK10908 2 IRFEHVSKAYLG----GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSA---GKIWFSGHDITRLKNREV 74 (222)
T ss_pred EEEEeeEEEecC----CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccCChhHH
Confidence 689999999841 2469999999999999999999999999999999999998875 999999986532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
..+.++|++|++.+++.+|++||+.+...... ....+..++++++++.+++.+..++.+ ..||||||||++
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~ 147 (222)
T PRK10908 75 PFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG-ASGDDIRRRVSAALDKVGLLDKAKNFP------IQLSGGEQQRVG 147 (222)
T ss_pred HHHHhheEEEecCccccccccHHHHHHhHHHhcC-CCHHHHHHHHHHHHHHcCChhhhhCCc------hhCCHHHHHHHH
Confidence 12468999999988889999999988654321 111123456788999999988777654 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (641)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++ +++..+||++++|++|+++
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 148 IARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI-GLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999999999999999987789999988887 4788899999999999985
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=357.17 Aligned_cols=218 Identities=23% Similarity=0.329 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|.+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~---G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 5 ILKVEELNYNYSD----GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS---GRILFDGKPIDYSRKGL 77 (283)
T ss_pred eEEEEeEEEEeCC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---cEEEECCEECCCCcchH
Confidence 6899999999842 3469999999999999999999999999999999999999875 999999987531
Q ss_pred --CCceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 --PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 --~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
.++.++|++|++. .+...||+||+.+...... .......++++++++.+||.+..++.+ +.||||||||+
T Consensus 78 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LS~G~~qrl 150 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLK-LPEDEVRKRVDNALKRTGIEHLKDKPT------HCLSFGQKKRV 150 (283)
T ss_pred HHHHhhEEEEecCcchhhccccHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHCCChhhhhCCc------ccCCHHHHHHH
Confidence 1246999999863 2345799999987643221 111123467899999999998887754 59999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++|||+++|++|++++.|++++.
T Consensus 151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~ 229 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEV 229 (283)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999865 89999988887 468889999999999999999999887
Q ss_pred HH
Q 006548 336 LQ 337 (641)
Q Consensus 336 ~~ 337 (641)
..
T Consensus 230 ~~ 231 (283)
T PRK13636 230 FA 231 (283)
T ss_pred hc
Confidence 64
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=347.89 Aligned_cols=207 Identities=29% Similarity=0.425 Sum_probs=172.8
Q ss_pred EEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEE
Q 006548 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFV 187 (641)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv 187 (641)
++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+....++.++|+
T Consensus 2 ~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~i~~v 73 (213)
T cd03235 2 VEDLTVSYG-----GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTS---GSIRVFGKPLEKERKRIGYV 73 (213)
T ss_pred cccceeEEC-----CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCccHHHHHhheEEe
Confidence 578888884 2469999999999999999999999999999999999998875 99999997643223569999
Q ss_pred cCCCccC--CCCCHHHHHHHHHHhcCC---CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 188 ERETTLI--GSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 188 ~Q~~~l~--~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
+|++.+. ..+||+||+.+....... .......++++++++.+++.+..++.+ ..||||||||++|||||
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~la~al 147 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI------GELSGGQQQRVLLARAL 147 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc------ccCCHHHHHHHHHHHHH
Confidence 9998763 347999999875432110 011123456889999999988777754 49999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ +++.++||++++|++| +++.|
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999999999987889999988887 4788999999999876 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=354.73 Aligned_cols=222 Identities=22% Similarity=0.279 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEeccc----ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 006548 105 SVVWKDLTVTIKGKR----RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~- 179 (641)
.++++||++.|.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQ---GTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEcccc
Confidence 478999999985310 113579999999999999999999999999999999999999875 999999987532
Q ss_pred -------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCC
Q 006548 180 -------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (641)
Q Consensus 180 -------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LS 249 (641)
..+.++|++|++ .+++.+||+||+.+.............+++++++++.+||. +..++.+ .+||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~------~~LS 152 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLP------RQLS 152 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCCh------hhCC
Confidence 124699999996 46778999999977543211111112345688999999996 6666644 4999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 250 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +.+.++||++++|++|++++
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999865 89999988887 47888999999999999999
Q ss_pred EeChhHHH
Q 006548 329 FGETLACL 336 (641)
Q Consensus 329 ~G~~~~~~ 336 (641)
.|+++++.
T Consensus 232 ~g~~~~~~ 239 (265)
T TIGR02769 232 ECDVAQLL 239 (265)
T ss_pred ECCHHHHc
Confidence 99988764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=344.71 Aligned_cols=208 Identities=24% Similarity=0.342 Sum_probs=182.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-CceE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGSY 184 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~-~~~~ 184 (641)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+.... .+.+
T Consensus 1 l~l~~v~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~~~~~~~~~~~~~ 72 (223)
T TIGR03740 1 LETKNLSKRFG-----KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS---GEIIFDGHPWTRKDLHKI 72 (223)
T ss_pred CEEEeEEEEEC-----CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEeccccccccE
Confidence 46899999884 3469999999999999999999999999999999999998875 9999999865322 2469
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHh
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (641)
+|++|++.+++.+|++||+.+...... ....++.++++.+|+.+..++.++ .||||||||++|||||+.
T Consensus 73 ~~~~q~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~~rv~laral~~ 141 (223)
T TIGR03740 73 GSLIESPPLYENLTARENLKVHTTLLG-----LPDSRIDEVLNIVDLTNTGKKKAK------QFSLGMKQRLGIAIALLN 141 (223)
T ss_pred EEEcCCCCccccCCHHHHHHHHHHHcC-----CCHHHHHHHHHHcCCcHHHhhhHh------hCCHHHHHHHHHHHHHhc
Confidence 999999999999999999987654321 123467889999999988887654 999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 265 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++. ++.++||++++|++|+++..|++.
T Consensus 142 ~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 142 HPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChh
Confidence 99999999999999999999999999999877899999999874 788999999999999999999865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=346.40 Aligned_cols=216 Identities=37% Similarity=0.586 Sum_probs=182.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC---CCCCceeEEEECCEeCCC--
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP---HSARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~---~~~~~~G~I~~~G~~~~~-- 179 (641)
.+.++|+++++++.+ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |+ +|+|.++|.+...
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWN-KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQ 78 (226)
T ss_pred cceeecceeeeecCc-cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHH
Confidence 367999999986421 13679999999999999999999999999999999999998 65 4999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccc--hHHHHHHH-HHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVED-AIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~--~~~~~v~~-~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
.++.++|++|++.+++.+||+||+.+......+.... ....++++ .++.+++.+..++.+ +.|||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl 152 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV------KGISGGERRRV 152 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc------cCcCHHHHHHH
Confidence 2357999999999999999999999875543221111 12234555 889999987776644 59999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++.+++.++||++++|++|++++.|
T Consensus 153 ~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 153 SIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998778999999999755789999999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=352.53 Aligned_cols=235 Identities=25% Similarity=0.337 Sum_probs=201.8
Q ss_pred eEEEEeEEEEEeccc-------------------ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 006548 105 SVVWKDLTVTIKGKR-------------------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR 165 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~-------------------~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~ 165 (641)
.++++|+.+-+..+. .+...-++|+|+.++.||+..|||-||||||||+++|.++.+|+.
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~- 82 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR- 82 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC-
Confidence 578999988774320 122346899999999999999999999999999999999999976
Q ss_pred ceeEEEECCEeCC---------CCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHh
Q 006548 166 MYGEVFVNGAKSE---------MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYAN 236 (641)
Q Consensus 166 ~~G~I~~~G~~~~---------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 236 (641)
|+|+++|.++. .+++.+++|+|...|+|+.||.||..|+..++.- ...++++++.++|+.+||+++.+
T Consensus 83 --G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv-~~~er~~~a~~~l~~VgL~~~~~ 159 (386)
T COG4175 83 --GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGV-PKAEREERALEALELVGLEGYAD 159 (386)
T ss_pred --ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCC-CHHHHHHHHHHHHHHcCchhhhh
Confidence 99999998742 1345799999999999999999999998766532 12347788999999999999998
Q ss_pred hhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcC
Q 006548 237 KLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLF 315 (641)
Q Consensus 237 ~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~ 315 (641)
+ +|++|||||||||.|||||+.+|+||+||||+|+|||--+.++.+.|.+|.++ ++|||+++|+. +|+.++.
T Consensus 160 ~------yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlriG 232 (386)
T COG4175 160 K------YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALRIG 232 (386)
T ss_pred c------CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHhcc
Confidence 8 45699999999999999999999999999999999999999999999999855 89999987776 6899999
Q ss_pred CEEEEEeCCeEEEEeChhHHHHHhhhcCCCCCCCCCchHHHHHHHhcc
Q 006548 316 DRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTD 363 (641)
Q Consensus 316 D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~l~~~~~~ 363 (641)
|||.+|++|++|..|+|+|++. ||++.|+.....+
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~-------------~PAndYV~~Fv~~ 267 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILL-------------NPANDYVRDFVRN 267 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHc-------------CccHHHHHHHHhc
Confidence 9999999999999999999864 5677676655433
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=352.09 Aligned_cols=216 Identities=26% Similarity=0.342 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|+ ++.+|+|+|+++++|++++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~---G~i~~~g~~~~~~~~~~ 73 (258)
T PRK13548 2 MLEARNLSVRLG-----GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDS---GEVRLNGRPLADWSPAE 73 (258)
T ss_pred eEEEEeEEEEeC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEEcccCCHHH
Confidence 478999999984 3469999999999999999999999999999999999998875 999999986431
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
..+.++|++|++.+++.+||+||+.+...... ......+++++++++.+||.+..++.+ ..|||||||||+||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGe~qrv~la 146 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG-LSRAEDDALVAAALAQVDLAHLAGRDY------PQLSGGEQQRVQLA 146 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhcccC-CCcHHHHHHHHHHHHHcCCHhHhcCCc------ccCCHHHHHHHHHH
Confidence 12468999999988888999999987542211 111123456889999999988777755 49999999999999
Q ss_pred HHHH------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 260 RELV------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 260 ~aL~------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
|||+ .+|++|||||||+|||+.++..+.+.|++++ ++|.|||+++|++ +++.++||++++|++|++++.|++
T Consensus 147 ~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 225 (258)
T PRK13548 147 RVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVADGTP 225 (258)
T ss_pred HHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEeeCCH
Confidence 9999 5999999999999999999999999999998 6789999988887 478889999999999999999988
Q ss_pred hHHH
Q 006548 333 LACL 336 (641)
Q Consensus 333 ~~~~ 336 (641)
+++.
T Consensus 226 ~~~~ 229 (258)
T PRK13548 226 AEVL 229 (258)
T ss_pred HHHh
Confidence 7654
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=353.28 Aligned_cols=219 Identities=26% Similarity=0.407 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+...+|+|.++|.+....
T Consensus 4 ~l~~~nl~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 4 IIRVEKLAKTFN-----QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78 (262)
T ss_pred EEEEeeEEEEeC-----CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccc
Confidence 589999999984 35699999999999999999999999999999999999987532459999999864210
Q ss_pred ------CceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-------CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCC
Q 006548 181 ------YGSYGFVERETTLIGSLTVREYLYYSALLQLP-------GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (641)
Q Consensus 181 ------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~ 247 (641)
.+.++|++|++.+++.+||.||+.+......+ ....+.+++++++++.+|+.+..++.+ ..
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~ 152 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV------ST 152 (262)
T ss_pred hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc------cc
Confidence 23589999999999999999999875321100 001123457899999999988877755 49
Q ss_pred CCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||+++|++ .++.++||++++|++|++
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g~i 231 (262)
T PRK09984 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQGHV 231 (262)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999985 489999998887 468899999999999999
Q ss_pred EEEeChhHH
Q 006548 327 LFFGETLAC 335 (641)
Q Consensus 327 v~~G~~~~~ 335 (641)
++.|++++.
T Consensus 232 ~~~g~~~~~ 240 (262)
T PRK09984 232 FYDGSSQQF 240 (262)
T ss_pred EEeCCHHHh
Confidence 999988653
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=354.30 Aligned_cols=215 Identities=25% Similarity=0.294 Sum_probs=183.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
++++||++.|++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 2 l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 2 IRLENVSYSYPD----GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQK---GKVLVSGIDTGDFSKLQG 74 (274)
T ss_pred EEEEEEEEEcCC----CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEECCccccHHH
Confidence 679999999842 2459999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 181 -YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.+.++|++|++. .+...||.||+.+...... ....+..++++++++.+||.+..++.+ ..|||||||||+|
T Consensus 75 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~~qrv~l 147 (274)
T PRK13644 75 IRKLVGIVFQNPETQFVGRTVEEDLAFGPENLC-LPPIEIRKRVDRALAEIGLEKYRHRSP------KTLSGGQGQCVAL 147 (274)
T ss_pred HHhheEEEEEChhhhcccchHHHHHHhhHHHcC-CCHHHHHHHHHHHHHHCCCHHHhcCCc------ccCCHHHHHHHHH
Confidence 246999999975 3566899999987653321 111123456889999999998887754 4999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++. ++ ..||++++|++|++++.|+++++.
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999877999999988875 56 569999999999999999988765
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=348.99 Aligned_cols=217 Identities=20% Similarity=0.284 Sum_probs=180.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~--~~~~~~~G~I~~~G~~~~~---- 179 (641)
++++||++.|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|+ +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSVE-----DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEEC-----CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHH
Confidence 46899999984 346999999999999999999999999999999999995 565 4999999987432
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC--C----ccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLP--G----FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPC 250 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~--~----~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSG 250 (641)
....++|++|++.+++.+|++|++.+....... . ...+..++++++++.+||. +..++.++ .+|||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~LS~ 147 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN-----EGFSG 147 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc-----cCcCH
Confidence 123489999999999999999999876432211 0 0111245688999999997 45555432 25999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc-CCEEEEEeCCeEEEE
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFF 329 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~~ 329 (641)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++. ++... ||++++|++|++++.
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999878899999999874 67777 899999999999999
Q ss_pred eChhHHH
Q 006548 330 GETLACL 336 (641)
Q Consensus 330 G~~~~~~ 336 (641)
|+++++.
T Consensus 227 g~~~~~~ 233 (243)
T TIGR01978 227 GDVELAK 233 (243)
T ss_pred cCHHHhc
Confidence 9887543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=371.40 Aligned_cols=203 Identities=27% Similarity=0.361 Sum_probs=177.7
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------CceEEEEcCCCccC
Q 006548 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------YGSYGFVERETTLI 194 (641)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---------~~~~~yv~Q~~~l~ 194 (641)
.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+.... ++.++|++|+..++
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s---G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR---GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC---CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 48999999999999999999999999999999999999875 9999999875321 24699999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCC
Q 006548 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (641)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEP 274 (641)
+.+||+||+.+....... ...+..+++.++++.+||.+..++.+ ++|||||||||+|||||+.+|++||||||
T Consensus 119 ~~~Tv~enl~~~~~~~~~-~~~~~~~~~~e~L~~~gL~~~~~~~~------~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 119 PHMTVLDNTAFGMELAGI-NAEERREKALDALRQVGLENYAHSYP------DELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred CCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCChhhhcCc------ccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999999999987654311 11224567889999999998887754 59999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 275 LYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 275 tsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|+|||+.++..+.+.|+++++ .|+|||+++|+. +++.++||++++|++|+++..|+++++..
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence 999999999999999999975 589999988886 57889999999999999999999887643
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=350.49 Aligned_cols=218 Identities=21% Similarity=0.268 Sum_probs=181.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+|+|+|+++|.. ..+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (254)
T PRK14273 7 IIETENLNLFYT-----DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81 (254)
T ss_pred eEEEeeeEEEeC-----CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence 689999999984 2469999999999999999999999999999999999998631 125999999986421
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc----hHHhhhhcCCCCCCCCCHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~~LSGG 251 (641)
.++.++|++|++.+++ +||+||+.+.............+++++++++.+++. +..++ .+++||||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~------~~~~LSgG 154 (254)
T PRK14273 82 DILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNT------NALSLSGG 154 (254)
T ss_pred cHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhC------CcccCCHH
Confidence 1346999999988884 899999988653321111112345688889999884 33344 45699999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
|||||+|||+|+.+|++|||||||+|||+.++..+++.|+++++ +.|+|+++|++ +++.++||++++|++|+++..|+
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~ 232 (254)
T PRK14273 155 QQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEESS 232 (254)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999964 78999988887 47889999999999999999999
Q ss_pred hhHHH
Q 006548 332 TLACL 336 (641)
Q Consensus 332 ~~~~~ 336 (641)
++++.
T Consensus 233 ~~~~~ 237 (254)
T PRK14273 233 TDELF 237 (254)
T ss_pred HHHHH
Confidence 88764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=354.51 Aligned_cols=218 Identities=22% Similarity=0.267 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||++.|.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|++....
T Consensus 5 ~l~~~~l~~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~---G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 5 IIRVEHISFRYPD---AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA---GTITVGGMVLSEETVWD 78 (279)
T ss_pred eEEEEEEEEEeCC---CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECCEECCcCcHHH
Confidence 5899999999842 13469999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 181 -YGSYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 181 -~~~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.+.++|++|++ .+++..||.||+.+...... ....+..++++++++.+||.+..++.+ ..|||||||||+|
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LS~G~~qrv~l 151 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG-VPREEMVERVDQALRQVGMEDFLNREP------HRLSGGQKQRVAI 151 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhCC-CCHHHHHHHHHHHHHHcCChhhhhCCc------ccCCHHHHHHHHH
Confidence 24699999997 36667899999988654321 111223467899999999998888755 4999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|++. ++. .||++++|++|++++.|+++++..
T Consensus 152 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 152 AGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999999876 899999999875 565 599999999999999999887653
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=353.84 Aligned_cols=217 Identities=26% Similarity=0.362 Sum_probs=184.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|.+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++++. |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 2 LETRDLKYSYPD----GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTS---GEVLIKGEPIKYDKKSLL 74 (275)
T ss_pred EEEEEEEEEeCC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEECccccchHH
Confidence 689999999842 2469999999999999999999999999999999999999875 999999987531
Q ss_pred -CCceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 -PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 -~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
..+.++|++|++. .+...||.||+.+..... .....+..+++.++++.+||.+..++.+ ..||||||||++
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~LS~Gq~qrv~ 147 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL-GLSKEEVEKRVKEALKAVGMEGFENKPP------HHLSGGQKKRVA 147 (275)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchhhcCCh------hhCCHHHHHHHH
Confidence 1246999999963 333579999998764321 1111123456889999999998887755 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||++++|++|++++.|+++++..
T Consensus 148 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987799999988887 47888999999999999999999988753
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=346.67 Aligned_cols=211 Identities=20% Similarity=0.320 Sum_probs=180.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (230)
T TIGR03410 1 LEVSNLNVYYG-----QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS---GSIRLDGEDITKLPPHER 72 (230)
T ss_pred CEEEeEEEEeC-----CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEECCCCCHHHH
Confidence 46899999884 3469999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcC-CchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-LSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
..+.++|++|+..+++.+|++||+.+....... ...+..+++++.++ +.+..++. +..||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~----~~~~~~~~~l~~~~~l~~~~~~~------~~~LS~G~~qrv~l 142 (230)
T TIGR03410 73 ARAGIAYVPQGREIFPRLTVEENLLTGLAALPR----RSRKIPDEIYELFPVLKEMLGRR------GGDLSGGQQQQLAI 142 (230)
T ss_pred HHhCeEEeccCCcccCCCcHHHHHHHHHHhcCc----chHHHHHHHHHHHHhHHHHhhCC------hhhCCHHHHHHHHH
Confidence 124699999999999999999999876533211 12334577788876 56666654 45999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|+++|++ +++.++||++++|++|+++..|+.+++
T Consensus 143 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 143 ARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999999999999875 89999988887 478889999999999999999998765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=332.03 Aligned_cols=217 Identities=26% Similarity=0.356 Sum_probs=187.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
++.+||++++. ++++|++||++++|||++||+||||||||||||.|+|.+.|++ |++.+||.+....
T Consensus 2 i~a~nls~~~~-----Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~---G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 2 IRAENLSYSLA-----GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS---GEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred eeeeeeEEEee-----cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCC---CeEeeCCcChhhCCHHHH
Confidence 67899999984 5679999999999999999999999999999999999999876 9999999875432
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
.+.-+.++|+..+-...||.|.+.++..-... ....+..+.++++|...++.+++.+.. ..|||||||||.+|
T Consensus 74 A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y------~~LSGGEqQRVqlA 147 (259)
T COG4559 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY------RTLSGGEQQRVQLA 147 (259)
T ss_pred HHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch------hhcCchHHHHHHHH
Confidence 24568899998887778999999987542211 111234455889999999999998854 49999999999999
Q ss_pred HHHHh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 260 RELVM------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 260 ~aL~~------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
|.|++ ++++||||||||+||...+..++++.++++++|..|+++.|+.+ ....+||||++|++||++..|+|+
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLN-LAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccch-HHHHhhheeeeeeCCeEeecCCHH
Confidence 99986 45699999999999999999999999999999999999888875 788999999999999999999999
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
+++.
T Consensus 227 ~vlt 230 (259)
T COG4559 227 DVLT 230 (259)
T ss_pred HhcC
Confidence 9873
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=352.05 Aligned_cols=217 Identities=22% Similarity=0.343 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|. ++.+|+|+|+++++||+++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 73 (255)
T PRK11231 2 TLRTENLTVGYG-----TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQS---GTVFLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEEeEEEEEC-----CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC---cEEEECCEEhHHCCHHH
Confidence 478999999884 3469999999999999999999999999999999999998875 999999986421
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHh--c-CCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALL--Q-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~--~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
..+.++|++|+..+++.+|+.||+.++... . .........++++++++.+||.+..++.+ ..|||||||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv 147 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL------TDLSGGQRQRA 147 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc------ccCCHHHHHHH
Confidence 124699999999888889999999875211 0 11111123456889999999988777754 59999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ +++.++||++++|++|+++..|++++..
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 999999999999999999999999999999999999987789999988887 4788999999999999999999887653
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=350.69 Aligned_cols=218 Identities=20% Similarity=0.298 Sum_probs=181.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~-- 179 (641)
..++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.++.. ..+|+|.++|.+...
T Consensus 11 ~~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 85 (258)
T PRK14268 11 PQIKVENLNLWYG-----EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85 (258)
T ss_pred eeEEEeeeEEEeC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc
Confidence 3689999999884 3469999999999999999999999999999999999987510 125999999987421
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc----hHHhhhhcCCCCCCCCCH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPC 250 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~~LSG 250 (641)
..+.++|++|++.+++ +|++||+.+...... ......+++++++++.+++. +..++ .+..|||
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LSg 157 (258)
T PRK14268 86 VDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHG-ANKKDLDGVVENALRSAALWDETSDRLKS------PALSLSG 157 (258)
T ss_pred chHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCCcchhhhhcC------ChhhCCH
Confidence 1246999999998887 899999988653321 11112345678899999984 33444 4569999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++ .++.++||++++|++|++++.|
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999965 78999988887 4788899999999999999999
Q ss_pred ChhHHH
Q 006548 331 ETLACL 336 (641)
Q Consensus 331 ~~~~~~ 336 (641)
+++++.
T Consensus 236 ~~~~~~ 241 (258)
T PRK14268 236 QTRQIF 241 (258)
T ss_pred CHHHHh
Confidence 987764
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=355.18 Aligned_cols=215 Identities=20% Similarity=0.282 Sum_probs=182.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++...
T Consensus 2 l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 2 LATSDLWFRYQ-----DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQK---GAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred eEEEEEEEEcC-----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCc---cEEEECCEEcccccCCHH
Confidence 68999999984 3469999999999999999999999999999999999999875 999999987531
Q ss_pred -CCceEEEEcCCCcc-CCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 -PYGSYGFVERETTL-IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l-~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.++.++|++|++.. +...|+.||+.+...... ....+..++++++++.+||.+..++.+ ..||||||||++
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrl~ 146 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG-VPEAEITRRVDEALTLVDAQHFRHQPI------QCLSHGQKKRVA 146 (271)
T ss_pred HHHhheEEEeeChhhccccccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHhHhcCCc------hhCCHHHHHHHH
Confidence 12469999999753 345689999987643321 111123456788999999988877654 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 147 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999987789999988887 4788999999999999999999988764
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=361.93 Aligned_cols=228 Identities=20% Similarity=0.193 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~-~~~~G~I~~~G~~~~~---- 179 (641)
.++++||++.|..++ +...+|+|||+++++||+++|+|+||||||||+++|+|++++. ...+|+|.++|++...
T Consensus 3 ~L~v~~l~~~y~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSD-GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCC-CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 589999999995321 2356999999999999999999999999999999999998742 1235999999987532
Q ss_pred -----CCceEEEEcCCCc--cCCCCCHHHHHHHHHHhc-C-C---CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCC
Q 006548 180 -----PYGSYGFVERETT--LIGSLTVREYLYYSALLQ-L-P---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~-~-~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~ 247 (641)
..+.++||+|++. ++|.+||.+++.+..... . . ....+.++++.++++.+||.+..+.. +.++++
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~---~~~p~~ 158 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM---RSFPYE 158 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH---hCCchh
Confidence 1236999999975 678899999997643211 1 0 01112345788999999997533221 236679
Q ss_pred CCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|+|+++|+. ..+.++||+|++|++|++
T Consensus 159 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~G~i 237 (330)
T PRK15093 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYCGQT 237 (330)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 89999988876 578899999999999999
Q ss_pred EEEeChhHHHH
Q 006548 327 LFFGETLACLQ 337 (641)
Q Consensus 327 v~~G~~~~~~~ 337 (641)
++.|+++++.+
T Consensus 238 ve~g~~~~i~~ 248 (330)
T PRK15093 238 VETAPSKELVT 248 (330)
T ss_pred EEECCHHHHHh
Confidence 99999887653
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=343.36 Aligned_cols=209 Identities=24% Similarity=0.334 Sum_probs=176.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P---- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-~---- 180 (641)
++++||++.|+++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|.+... .
T Consensus 2 l~~~~v~~~~~~~~-~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 2 LKCENLGKRYQEGK-LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTS---GEVLFNGQSLSKLSSNER 77 (221)
T ss_pred EEEEeeeEEccCCC-cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEhhhcCHhHH
Confidence 67899999985321 12469999999999999999999999999999999999999875 999999987531 1
Q ss_pred ----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 181 ----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
.+.++|++|++.+++.+||+||+.+....+.. ...+..+++.++++.+|+.+..++.+ ..|||||||||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv 150 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKK-SVKEAKERAYEMLEKVGLEHRINHRP------SELSGGERQRV 150 (221)
T ss_pred HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHH
Confidence 14699999999999999999999886543211 11123456789999999988777754 49999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (641)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++. .+|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LAK-KLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHh-hcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999864 899999998874 554 58999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=349.53 Aligned_cols=223 Identities=25% Similarity=0.298 Sum_probs=183.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCC---C
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSE---M 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~---~ 179 (641)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. ..+|+|.++|++.. .
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (253)
T PRK14267 4 AIETVNLRVYYG-----SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78 (253)
T ss_pred eEEEEeEEEEeC-----CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 589999999984 2469999999999999999999999999999999999988730 13599999998753 1
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
.++.++|++|++.+++.+||.||+.+....+.. .......++++++++.+++.+...... +..+..|||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~q 156 (253)
T PRK14267 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRL--NDYPSNLSGGQRQ 156 (253)
T ss_pred ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhh--ccChhhCCHHHHH
Confidence 124699999999999999999999876543210 011123456788999999853211111 2355699999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++ .++.++||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999975 68999988887 47889999999999999999999877
Q ss_pred HH
Q 006548 335 CL 336 (641)
Q Consensus 335 ~~ 336 (641)
+.
T Consensus 235 ~~ 236 (253)
T PRK14267 235 VF 236 (253)
T ss_pred HH
Confidence 64
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=342.68 Aligned_cols=204 Identities=27% Similarity=0.356 Sum_probs=171.9
Q ss_pred EEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----Cc
Q 006548 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YG 182 (641)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~ 182 (641)
++|+++.|.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+.... .+
T Consensus 2 ~~~l~~~~~~~---~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~ 75 (211)
T cd03225 2 LKNLSFSYPDG---ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTS---GEVLVDGKDLTKLSLKELRR 75 (211)
T ss_pred ceeEEEecCCC---CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEcccCCHHHHHh
Confidence 67899888421 1569999999999999999999999999999999999998875 9999999865321 24
Q ss_pred eEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 183 SYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 183 ~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
.++|++|++. .++.+||+||+.+...... .......++++++++.++|.+..++.+ ..|||||||||+||||
T Consensus 76 ~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~lara 148 (211)
T cd03225 76 KVGLVFQNPDDQFFGPTVEEEVAFGLENLG-LPEEEIEERVEEALELVGLEGLRDRSP------FTLSGGQKQRVAIAGV 148 (211)
T ss_pred hceEEecChhhhcCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCcHhhhcCCc------ccCCHHHHHHHHHHHH
Confidence 6899999974 3567899999987643221 111123456888999999988777654 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++..+||++++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999987799999988887 47888999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=403.88 Aligned_cols=222 Identities=25% Similarity=0.310 Sum_probs=194.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..++++||++.|++ +++.+|+|+|+.+.+||+++|+||||||||||+|+|+|+.+|++ |+|.++|.++...
T Consensus 927 ~~L~I~nLsK~y~~---~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pts---G~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP---SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTS---GTVLVGGKDIETNLDA 1000 (2272)
T ss_pred ceEEEEeEEEEecC---CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCc---eEEEECCEECcchHHH
Confidence 36899999999942 23579999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
++.+||++|++.+++.+||+||+.+.++++.. ...+.+++++++++.+||.+..++.++ +|||||||||+||
T Consensus 1001 ~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~-~~~~~~~~v~~lL~~vgL~~~~~~~~~------~LSGGqKQRLsLA 1073 (2272)
T TIGR01257 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLKGR-SWEEAQLEMEAMLEDTGLHHKRNEEAQ------DLSGGMQRKLSVA 1073 (2272)
T ss_pred HhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchhhcCChh------hCCHHHHHHHHHH
Confidence 35699999999999999999999987765421 112345678999999999988887554 9999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHh
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (641)
+||+.+|+||||||||+|||+.+++.++++|++++ +|+|||+++|++ +++..+||||++|++|+++..|++.++.+.|
T Consensus 1074 rALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 99999999999999999999999999999999995 589999988887 5888999999999999999999999887655
Q ss_pred h
Q 006548 340 S 340 (641)
Q Consensus 340 ~ 340 (641)
.
T Consensus 1152 g 1152 (2272)
T TIGR01257 1152 G 1152 (2272)
T ss_pred C
Confidence 3
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=353.09 Aligned_cols=218 Identities=22% Similarity=0.326 Sum_probs=185.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..+.++||++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 10 ~~l~i~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~ 81 (265)
T PRK10575 10 TTFALRNVSFRVP-----GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSE---GEILLDAQPLESWSSK 81 (265)
T ss_pred ceEEEeeEEEEEC-----CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCEehhhCCHH
Confidence 3589999999984 2469999999999999999999999999999999999998875 999999986421
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC---CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|+..+++.+||.||+.+....... ......+++++++++.+++.+..++.+ ..||||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qr 155 (265)
T PRK10575 82 AFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV------DSLSGGERQR 155 (265)
T ss_pred HHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc------ccCCHHHHHH
Confidence 124699999998888899999999875321110 001123456889999999988777754 4999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|+++..|++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999999999999865 89999988887 47889999999999999999998876
Q ss_pred HH
Q 006548 335 CL 336 (641)
Q Consensus 335 ~~ 336 (641)
+.
T Consensus 235 ~~ 236 (265)
T PRK10575 235 LM 236 (265)
T ss_pred hc
Confidence 53
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=352.32 Aligned_cols=222 Identities=21% Similarity=0.298 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEeccc----ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 006548 105 SVVWKDLTVTIKGKR----RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~- 179 (641)
.++++||+++|..+. .+.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|++ |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~ 80 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GELLIDDHPLHFG 80 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC---CEEEECCEECCCC
Confidence 589999999995211 113469999999999999999999999999999999999999875 999999987532
Q ss_pred ----CCceEEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHH
Q 006548 180 ----PYGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGe 252 (641)
..+.++|++|++. +++.+||.|++.+..............+.++++++.+||. +..++. +..|||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~LS~G~ 154 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYY------PHMLAPGQ 154 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcC------chhcCHHH
Confidence 1246999999874 6778899999987654432111112345688999999994 566654 45999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ +++..+||++++|++|+++..|+
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999999865 89999988887 47888999999999999999998
Q ss_pred hhHHH
Q 006548 332 TLACL 336 (641)
Q Consensus 332 ~~~~~ 336 (641)
++++.
T Consensus 234 ~~~~~ 238 (267)
T PRK15112 234 TADVL 238 (267)
T ss_pred HHHHh
Confidence 77654
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=341.49 Aligned_cols=207 Identities=28% Similarity=0.356 Sum_probs=175.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 182 (641)
+.++|+++.+.+ +. .|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+... ..+
T Consensus 1 i~~~~l~~~~~~-----~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~---G~i~~~g~~~~~~~~~~~ 70 (211)
T cd03298 1 VRLDKIRFSYGE-----QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQS---GRVLINGVDVTAAPPADR 70 (211)
T ss_pred CEEEeEEEEeCC-----Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcCcCCHhHc
Confidence 368999998842 12 39999999999999999999999999999999998875 999999987532 235
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++|++.+++.+||+||+.+........ ....+++++++++.+||.+..++.+ .+||||||||++|||||
T Consensus 71 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 71 PVSMLFQENNLFAHLTVEQNVGLGLSPGLKL-TAEDRQAIEVALARVGLAGLEKRLP------GELSGGERQRVALARVL 143 (211)
T ss_pred cEEEEecccccCCCCcHHHHHhcccccccCc-cHHHHHHHHHHHHHcCCHHHHhCCc------ccCCHHHHHHHHHHHHH
Confidence 6999999999999999999998754321111 1123556889999999988887754 49999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|+++|++ .++.++||++++|++|+++..|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999854 89999988887 5788999999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=353.05 Aligned_cols=218 Identities=26% Similarity=0.356 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.+.++|+++.|.+ .+.+|+|+|+++++||+++|+|+||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 3 ~l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 75 (277)
T PRK13652 3 LIETRDLCYSYSG----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS---GSVLIRGEPITKENIRE 75 (277)
T ss_pred eEEEEEEEEEeCC----CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHHH
Confidence 4789999999842 2359999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 181 -YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.+.++|++|++. .+...||.||+.+..... .......+++++++++.+||.+..++.+ +.||||||||++|
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~Gq~qrl~l 148 (277)
T PRK13652 76 VRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL-GLDEETVAHRVSSALHMLGLEELRDRVP------HHLSGGEKKRVAI 148 (277)
T ss_pred HHhheEEEecCcccccccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChhHhcCCc------ccCCHHHHHHHHH
Confidence 246899999963 333679999998765322 1111123456889999999988887754 4999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|++++..+
T Consensus 149 araL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 149 AGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999999999999999999999999999875 89999988887 47889999999999999999999988754
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=351.93 Aligned_cols=218 Identities=23% Similarity=0.341 Sum_probs=185.9
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..+.++||++.|+ .+.+|+|+|+++.+||+++|+||||||||||+++|+|+++|+. |+|.++|++....
T Consensus 6 ~~l~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 6 ARLRGEQLTLGYG-----KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAH---GHVWLDGEHIQHYASK 77 (265)
T ss_pred cEEEEEEEEEEEC-----CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---cEEEECCEEhhhCCHH
Confidence 4689999999984 3469999999999999999999999999999999999998875 9999999864321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCC---CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.+.++|++|++.+++.+||+||+.+......+ ......+++++++++.+||.+..++.+ ..||||||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~Gq~qr 151 (265)
T PRK10253 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV------DTLSGGQRQR 151 (265)
T ss_pred HHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc------ccCChHHHHH
Confidence 24689999999999899999999764211100 001123456889999999988777754 5999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999864 89999988887 47899999999999999999999877
Q ss_pred HH
Q 006548 335 CL 336 (641)
Q Consensus 335 ~~ 336 (641)
+.
T Consensus 231 ~~ 232 (265)
T PRK10253 231 IV 232 (265)
T ss_pred Hh
Confidence 64
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=344.08 Aligned_cols=214 Identities=24% Similarity=0.313 Sum_probs=182.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 182 (641)
++++||++.|.+ + ..|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|++... ..+
T Consensus 2 l~~~~l~~~~~~-----~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 2 LKLTDITWLYHH-----L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS---GSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred eEEEEEEEEECC-----c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCeecCcCChhhc
Confidence 689999999842 1 238999999999999999999999999999999999875 999999987532 134
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++|++.+++.+|+.||+.+....... .....+++++++++.+||.+..++.+ ..||||||||++|||+|
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~laral 144 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLK-LNAAQREKLHAIARQMGIEDLLARLP------GQLSGGQRQRVALARCL 144 (232)
T ss_pred cEEEEecccccccCCcHHHHHhcccccccC-CCHHHHHHHHHHHHHcCcHHHHhCCc------ccCCHHHHHHHHHHHHH
Confidence 699999999999999999999765321111 11123556899999999998887755 49999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.++||++++|++|++++.|+++++.+
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999754 89999988887 47889999999999999999998876643
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=346.98 Aligned_cols=223 Identities=25% Similarity=0.294 Sum_probs=183.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~--~~~~G~I~~~G~~~~~--- 179 (641)
.++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 77 (250)
T PRK14247 3 KIEIRDLKVSFG-----QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77 (250)
T ss_pred eEEEEeeEEEEC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH
Confidence 488999999884 246999999999999999999999999999999999998742 0135999999987532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
..+.++|++|++.+++.+||+||+.+....... ....+..+.++++++.+||.+..+... +..+.+|||||||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LSgG~~qrv 155 (250)
T PRK14247 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRL--DAPAGKLSGGQQQRL 155 (250)
T ss_pred HHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhh--cCCcccCCHHHHHHH
Confidence 124699999999888899999999886532211 111123456889999999864221111 235569999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999964 78999988887 4788899999999999999999987764
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=349.98 Aligned_cols=216 Identities=30% Similarity=0.425 Sum_probs=184.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
+.++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 2 l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 73 (256)
T TIGR03873 2 LRLSRVSWSAG-----GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDA---GTVDLAGVDLHGLSRRAR 73 (256)
T ss_pred ceEEeEEEEEC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCEEcccCCHHHH
Confidence 67899999984 3469999999999999999999999999999999999999875 9999999875321
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHh--cC-CCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALL--QL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~--~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.+.++|++|++.+++.+||+||+.+.... .. .....+..+++.++++.+++.+..++.+ ..||||||||++
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~ 147 (256)
T TIGR03873 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM------STLSGGERQRVH 147 (256)
T ss_pred hhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc------ccCCHHHHHHHH
Confidence 24589999998888889999999875211 00 0011123456889999999988777754 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|+++||||||+|||+.++..+.+.|++++++|.|||+++|++. ++.++||++++|++|+++..|+.+++.
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 999999999999999999999999999999999999877899999888874 788999999999999999999887653
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=346.03 Aligned_cols=211 Identities=25% Similarity=0.413 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.+. .+.+|+|+|+++.+||+++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 74 (241)
T PRK14250 3 EIEFKEVSYSSF-----GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTE---GSILIDGVDIKTIDVID 74 (241)
T ss_pred eEEEEeEEEEeC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEhhhcChHH
Confidence 588999999884 3469999999999999999999999999999999999998875 999999987421
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.++.++|++|++.+++ .||+||+.+..... . ....++.++++.++|. +..++. +..||||||||++|
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~---~~~~~~~~~l~~~~l~~~~~~~~------~~~LS~G~~qrl~l 142 (241)
T PRK14250 75 LRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK--G---EKNVDVEYYLSIVGLNKEYATRD------VKNLSGGEAQRVSI 142 (241)
T ss_pred hhhcEEEEecCchhch-hhHHHHHhcchhhc--C---cHHHHHHHHHHHcCCCHHHhhCC------cccCCHHHHHHHHH
Confidence 1346999999998886 69999997653221 1 1235678899999996 566664 45999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 143 ARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999864 89999988887 4788899999999999999999987764
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=339.52 Aligned_cols=219 Identities=24% Similarity=0.382 Sum_probs=198.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCce
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGS 183 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-~~~~ 183 (641)
.+++++|++++ +.+++++|+||.++||++.+++|||||||||.+++|.|+++|++ |+|.++|.+... .+.+
T Consensus 2 ~L~ie~vtK~F-----g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~---G~I~~~g~~~~~~~~~r 73 (300)
T COG4152 2 ALEIEGVTKSF-----GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTE---GEITWNGGPLSQEIKNR 73 (300)
T ss_pred ceEEecchhcc-----CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccC---ceEEEcCcchhhhhhhh
Confidence 57899999998 46789999999999999999999999999999999999999975 999999988643 3467
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~ 263 (641)
|||+|.+..|+|.+||.|.|.|.+.++-- ...+.+++++.+|+.+++.+...+++. +||.|++|++.+..+++
T Consensus 74 IGyLPEERGLy~k~tv~dql~yla~LkGm-~~~e~~~~~~~wLer~~i~~~~~~kIk------~LSKGnqQKIQfisavi 146 (300)
T COG4152 74 IGYLPEERGLYPKMTVEDQLKYLAELKGM-PKAEIQKKLQAWLERLEIVGKKTKKIK------ELSKGNQQKIQFISAVI 146 (300)
T ss_pred cccChhhhccCccCcHHHHHHHHHHhcCC-cHHHHHHHHHHHHHhccccccccchHH------HhhhhhhHHHHHHHHHh
Confidence 99999999999999999999998887621 122456779999999999988877664 99999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHh
Q 006548 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (641)
Q Consensus 264 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (641)
++|+++|||||+|||||.+.+.+.+.+.+++++|.|||+++|.. +.+.++||++++|++|+.|.+|+.+++...|
T Consensus 147 HePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 99999999999999999999999999999999999999988876 6899999999999999999999999988754
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=346.71 Aligned_cols=222 Identities=19% Similarity=0.265 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC---CCCCCCceeEEEECCEeCCC--
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR---LPHSARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~---~~~~~~~~G~I~~~G~~~~~-- 179 (641)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+ .++. ..+|+|.++|.+...
T Consensus 3 ~l~~~~~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14245 3 KIDARDVNFWYG-----DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKG 76 (250)
T ss_pred EEEEEEEEEEEC-----CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEeccccc
Confidence 688999999984 34699999999999999999999999999999999997 3442 125999999987532
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
.++.++|++|++.+++ .|++||+.+....+.........+.++++++.+||.+..+... +..+..|||||||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~q 153 (250)
T PRK14245 77 VQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKL--KESAFALSGGQQQ 153 (250)
T ss_pred ccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhh--hCCcccCCHHHHH
Confidence 1246999999998887 6999999876543211111123456789999999864322111 2355699999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++. +++|||+++|++. ++.++||++++|++|++++.|++++
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999995 4789999888874 7889999999999999999999887
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 232 ~~~ 234 (250)
T PRK14245 232 IFT 234 (250)
T ss_pred Hhc
Confidence 753
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=346.01 Aligned_cols=223 Identities=22% Similarity=0.312 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|++...
T Consensus 4 ~l~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 4 KVKLEQLNVHFG-----KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred EEEEEEEEEEeC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 589999999984 3469999999999999999999999999999999999986 321135999999987531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.++.++|++|+..+++.+|++||+.+...........+.+++++++++.+++.+...... +..+..||||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~qr 156 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL--KSNAMELSGGQQQR 156 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHh--hCCcCcCCHHHHHH
Confidence 134699999999999999999999876432210011123456788999999864221111 22556999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|+++..|++++.
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999975 58999988887 478899999999999999999998775
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 235 ~ 235 (252)
T PRK14256 235 F 235 (252)
T ss_pred H
Confidence 4
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=365.41 Aligned_cols=205 Identities=26% Similarity=0.346 Sum_probs=178.7
Q ss_pred cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----CC-C--------CCceEEEE
Q 006548 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK----SE-M--------PYGSYGFV 187 (641)
Q Consensus 121 ~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~----~~-~--------~~~~~~yv 187 (641)
+...+|+|+|+++++||+++|+|+||||||||+++|+|+++|+. |+|+++|++ .. . ..+.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~---G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSR---GSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 34578999999999999999999999999999999999999875 999999962 21 1 12469999
Q ss_pred cCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCc
Q 006548 188 ERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPH 267 (641)
Q Consensus 188 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~ 267 (641)
+|+..++|.+||+||+.++...+.. ...+.+++++++++.+||.+..++.+ .+|||||||||+|||||+.+|+
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~-~~~~~~~~a~e~le~vgL~~~~~~~~------~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGM-PEAERRKRVDEQLELVGLAQWADKKP------GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999987644311 11234567899999999998887755 4999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 268 VLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 268 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||||||||+|||+.++..+.+.|++++++ |+|+|+++|+. +++.++||+|++|++|+++..|+++++.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999865 89999988887 5788999999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=341.15 Aligned_cols=211 Identities=28% Similarity=0.287 Sum_probs=178.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||++.|.+++ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++....
T Consensus 6 ~l~~~~l~~~~~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 6 IVEVHHLKKSVGQGE-HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSS---GEVSLVGQPLHQMDEEA 81 (228)
T ss_pred eEEEeeeEEEccCCC-cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---eeEEECCEEcccCCHHH
Confidence 589999999985311 11359999999999999999999999999999999999998875 9999999875321
Q ss_pred -----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.+.++|++|++.+++.+||.||+.+....+. .......++++++++.+++.+..++.+ ..||||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~Ge~qr 154 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG-ESSRQSRNGAKALLEQLGLGKRLDHLP------AQLSGGEQQR 154 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCHhHhhCCh------hhCCHHHHHH
Confidence 2469999999999999999999987653321 111224567889999999988877755 4999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. .+ +.||++++|++|++++
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999765 899999989875 55 4599999999999875
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=372.82 Aligned_cols=229 Identities=25% Similarity=0.320 Sum_probs=198.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKSE----- 178 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~-~~~~G~I~~~G~~~~----- 178 (641)
.++++||+++|... .....+++||||++++||++||+|.|||||||+.++|.|++++. ...+|+|.++|.+..
T Consensus 5 lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 5 LLEVENLTVEFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred eEEEeceEEEEecC-CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 68999999999754 23357999999999999999999999999999999999999887 345799999998531
Q ss_pred ----CCCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHH
Q 006548 179 ----MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 179 ----~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (641)
...+.++|++|++ .+.|-+||.+.+......+......+..+++.++|+.+||.+-..+ +.+|++|||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~----~~yPheLSGG~ 159 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR----DRYPHQLSGGM 159 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh----ccCCcccCchH
Confidence 1235799999995 6788899999998777666543333466788999999999876654 35889999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||.||+||+.+|++||+||||++||+.++.+|+++|+++. +.|.++|+++|++ ..+.++||||+||++|++|+.|+
T Consensus 160 rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G~ 238 (539)
T COG1123 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETGP 238 (539)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEecC
Confidence 999999999999999999999999999999999999999998 5599999988876 68999999999999999999999
Q ss_pred hhHHHHHh
Q 006548 332 TLACLQHF 339 (641)
Q Consensus 332 ~~~~~~~f 339 (641)
++++++.+
T Consensus 239 ~~~i~~~p 246 (539)
T COG1123 239 TEEILSNP 246 (539)
T ss_pred HHHHHhcc
Confidence 99998643
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=347.89 Aligned_cols=223 Identities=22% Similarity=0.280 Sum_probs=181.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~-- 179 (641)
..++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 12 ~~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 12 SKIQVRNLNFYYG-----KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred ceEEEEEEEEEeC-----CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 4689999999984 2469999999999999999999999999999999999986 211135999999987521
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
.++.++|++|+..+++ .||+||+.+...........+.+++++++++.+++.+...... +..+..|||||||
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~Gq~q 163 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKL--HQSGYSLSGGQQQ 163 (260)
T ss_pred cchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH--hcCCCCCCHHHHH
Confidence 1346999999998887 8999999876532211111123456889999999853211111 2245699999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|++|+++..|++++
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999964 78999988887 47888999999999999999999877
Q ss_pred HH
Q 006548 335 CL 336 (641)
Q Consensus 335 ~~ 336 (641)
+.
T Consensus 242 ~~ 243 (260)
T PRK10744 242 IF 243 (260)
T ss_pred HH
Confidence 64
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=352.07 Aligned_cols=220 Identities=22% Similarity=0.320 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEecccc-cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 105 SVVWKDLTVTIKGKRR-YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
.++++|++++|++..+ ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE---GKVYVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEeccccccH
Confidence 5899999999963211 13569999999999999999999999999999999999999875 999999987532
Q ss_pred --CCceEEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 --PYGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 --~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|++. ++ ..||.||+.|...... ....+.+++++++++.+||.+..++.+ ..||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LS~G~~qr 152 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLG-IPPEEIRERVDESLKKVGMYEYRRHAP------HLLSGGQKQR 152 (280)
T ss_pred HHHhhheEEEecChhhhhc-cccHHHHHHhhHhhcC-CCHHHHHHHHHHHHHHCCCHhHhhCCc------ccCCHHHHHH
Confidence 1346999999974 44 4699999988654221 111224567899999999998888755 4999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. ++.. ||++++|++|+++..|++++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~ 230 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKE 230 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999864 999999999885 5655 99999999999999999988
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+..
T Consensus 231 ~~~ 233 (280)
T PRK13633 231 IFK 233 (280)
T ss_pred Hhc
Confidence 754
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=342.20 Aligned_cols=215 Identities=28% Similarity=0.376 Sum_probs=185.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 182 (641)
+.++|+++.+. .+.+++|+|+++++||+++|+|+||||||||+++|+|.++|+. |+|.++|++... ..+
T Consensus 1 l~~~~l~~~~~-----~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03300 1 IELENVSKFYG-----GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTS---GEILLDGKDITNLPPHKR 72 (232)
T ss_pred CEEEeEEEEeC-----CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcCcCChhhc
Confidence 36899999884 3469999999999999999999999999999999999999875 999999987532 235
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++|++.+++.+|++||+.+....... ......++++++++.+|+.+..++.+ ..||||||||++|||+|
T Consensus 73 ~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~lS~G~~qrl~laral 145 (232)
T cd03300 73 PVNTVFQNYALFPHLTVFENIAFGLRLKKL-PKAEIKERVAEALDLVQLEGYANRKP------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred ceEEEecccccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHHHHHHHH
Confidence 799999999999889999999876543311 11123456889999999988887754 49999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
+.+|+++||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.++..
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999999999999999865 89999998887 4788999999999999999999876654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=347.13 Aligned_cols=219 Identities=23% Similarity=0.321 Sum_probs=181.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. ..+|+|.++|.+...
T Consensus 4 ~l~i~~v~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 4 RIDVKDLNIYYG-----SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred cEEEeeEEEEEC-----CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 589999999984 2469999999999999999999999999999999999986420 125999999987521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch----HHhhhhcCCCCCCCCCHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD----YANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~~LSGG 251 (641)
.++.++|++|+..+++.+||+||+.+.............+++++++++.+|+.+ ..++ .+.+||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LS~G 152 (258)
T PRK14241 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDK------PGGGLSGG 152 (258)
T ss_pred ChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhC------CcccCCHH
Confidence 124699999999999999999999876543211111123456788999999853 3333 45699999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe------CCe
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS------NGN 325 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~------~G~ 325 (641)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|+ +|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPGR 230 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCce
Confidence 99999999999999999999999999999999999999999964 68999988887 47889999999997 799
Q ss_pred EEEEeChhHHH
Q 006548 326 TLFFGETLACL 336 (641)
Q Consensus 326 iv~~G~~~~~~ 336 (641)
+++.|+++++.
T Consensus 231 i~~~~~~~~~~ 241 (258)
T PRK14241 231 LVEIDDTEKIF 241 (258)
T ss_pred EEecCCHHHHH
Confidence 99999987764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=347.40 Aligned_cols=223 Identities=20% Similarity=0.273 Sum_probs=181.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~-- 179 (641)
..++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++ |....+|+|.++|++...
T Consensus 11 ~~l~i~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 11 EVYQINGMNLWYG-----QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred ceEEEeeEEEEEC-----CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 3689999999984 3469999999999999999999999999999999999986 321135999999987531
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
.++.++|++|++.+++. ||+||+.+...........+..++++++++.+++.+...... +..+.+|||||||
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l--~~~~~~LS~Gq~q 162 (259)
T PRK14274 86 VDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRL--HTQALSLSGGQQQ 162 (259)
T ss_pred cCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhh--hCCcccCCHHHHH
Confidence 12469999999988875 999999876433211011123456788899999854221111 2345699999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999965 78999988987 47889999999999999999999887
Q ss_pred HH
Q 006548 335 CL 336 (641)
Q Consensus 335 ~~ 336 (641)
+.
T Consensus 241 ~~ 242 (259)
T PRK14274 241 MF 242 (259)
T ss_pred Hh
Confidence 64
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=349.74 Aligned_cols=218 Identities=21% Similarity=0.284 Sum_probs=184.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++|+++.+.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 6 ~~l~~~nl~~~~~~---~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~i~~~~~~ 79 (271)
T PRK13632 6 VMIKVENVSFSYPN---SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQS---GEIKIDGITISKENLK 79 (271)
T ss_pred eEEEEEeEEEEcCC---CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEecCcCCHH
Confidence 36899999998842 13469999999999999999999999999999999999999875 999999987532
Q ss_pred -CCceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 -PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 -~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.++.++|++|++. .++.+||+||+.+...... ....+..++++++++.+||.+..++.+ ..||||||||++
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~ 152 (271)
T PRK13632 80 EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK-VPPKKMKDIIDDLAKKVGMEDYLDKEP------QNLSGGQKQRVA 152 (271)
T ss_pred HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCCHHHhhCCc------ccCCHHHHHHHH
Confidence 1346999999974 5677899999987643221 111123456889999999998887755 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|++|||||||+|||+.++..+++.|++++++ ++|+|+++|++. ++ ..||++++|++|+++..|+++++.
T Consensus 153 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 153 IASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999866 589999999985 55 479999999999999999987764
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=363.50 Aligned_cols=207 Identities=23% Similarity=0.355 Sum_probs=181.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
+++ ||+++|.+ + .+ |+|+++++||+++|+|||||||||||++|+|+++|++ |+|.++|++...
T Consensus 2 l~~-~l~k~~~~-----~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~---G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 2 LEL-NFKQQLGD-----L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQK---GRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred eEE-EEEEEeCC-----E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccccccc
Confidence 456 88888842 2 23 8999999999999999999999999999999999875 999999986421
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
..+.++|++|+..+++.+||+||+.++.. ....++++++++.+||.+..++.+ ++|||||||||
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGq~qRv 137 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA-------KSMVAQFDKIVALLGIEPLLDRYP------GSLSGGEKQRV 137 (352)
T ss_pred cchhhCCEEEEcCCcccCCCCcHHHHHHhhhh-------hhhHHHHHHHHHHcCCchhhhCCc------ccCCHHHHHHH
Confidence 13579999999999999999999987532 123456889999999998887755 49999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|+++|++ +++..+||++++|++|+++..|+++++
T Consensus 138 alaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~i 216 (352)
T PRK11144 138 AIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEEV 216 (352)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999865 89999988887 578999999999999999999999887
Q ss_pred HH
Q 006548 336 LQ 337 (641)
Q Consensus 336 ~~ 337 (641)
..
T Consensus 217 ~~ 218 (352)
T PRK11144 217 WA 218 (352)
T ss_pred Hh
Confidence 64
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=343.87 Aligned_cols=222 Identities=20% Similarity=0.279 Sum_probs=181.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|++++....+|+|.++|++...
T Consensus 2 ~~~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 2 IAKTTNLNLFYG-----KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76 (246)
T ss_pred ceeeeeeEEEEC-----CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHH
Confidence 468999999984 2469999999999999999999999999999999999975311135999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.++.++|++|++.+++ .||+||+.+....+.. ......+++++++++.++|.+...... +..+..|||||||||+|
T Consensus 77 ~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 77 LRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL--KQNALALSGGQQQRLCI 153 (246)
T ss_pred HhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHh--cCCcccCCHHHHHHHHH
Confidence 1246999999998887 6999999876543211 011123456788999999964332222 23556999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|+|+++|++ +++.++||++++|++|++++.|++++..
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999865 88999988887 4788999999999999999999987754
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=353.96 Aligned_cols=220 Identities=18% Similarity=0.276 Sum_probs=182.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|+++....+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+...
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET---GQTIVGDYAIPANLKKI 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEcccccccc
Confidence 589999999985321112359999999999999999999999999999999999998875 999999986421
Q ss_pred -----CCceEEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHH
Q 006548 180 -----PYGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGG 251 (641)
.++.++|++|++. ++ ..||+||+.+..... .....+..++++++++.++|. +..++.+ ..||||
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~~~~~~~------~~LS~G 154 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNL-GENKQEAYKKVPELLKLVQLPEDYVKRSP------FELSGG 154 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhHhcCCh------hhCCHH
Confidence 1246899999963 44 469999998865321 111112345678899999994 6666644 599999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999864 89999988887 4788999999999999999999
Q ss_pred ChhHHH
Q 006548 331 ETLACL 336 (641)
Q Consensus 331 ~~~~~~ 336 (641)
+++++.
T Consensus 234 ~~~~~~ 239 (289)
T PRK13645 234 SPFEIF 239 (289)
T ss_pred CHHHHh
Confidence 988764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=337.98 Aligned_cols=208 Identities=26% Similarity=0.383 Sum_probs=177.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 182 (641)
++++||++.|. .+++|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++... ..+
T Consensus 1 ~~~~~l~~~~~-------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 1 LALDKVRYEYE-------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPAS---GSIKVNDQSHTGLAPYQR 70 (213)
T ss_pred CeEEeeeEEeC-------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEcccCChhcc
Confidence 36899999883 24689999999999999999999999999999999999875 999999987532 235
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++|++.+++.+|+.||+.+....... .....+++++++++.+||.+..++.+ +.||||||||++|||+|
T Consensus 71 ~i~~v~q~~~~~~~~t~~en~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 71 PVSMLFQENNLFAHLTVRQNIGLGLHPGLK-LNAEQQEKVVDAAQQVGIADYLDRLP------EQLSGGQRQRVALARCL 143 (213)
T ss_pred ceEEEeccCccCCCCcHHHHHHhHhhccCC-ccHHHHHHHHHHHHHcCcHHHhhCCc------ccCCHHHHHHHHHHHHH
Confidence 699999999999999999999875432111 11123456888999999988877754 59999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
+.+|++++|||||+|||+.++..+.+.|+++.++ |+|+|+++|++ .++.++||++++|++|+++..|+
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999865 89999988887 47788999999999999998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=347.98 Aligned_cols=218 Identities=20% Similarity=0.261 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|+++.|.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 7 ~l~i~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 7 IIVFKNVSFQYQS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKS---GEIFYNNQAITDDNFEK 80 (269)
T ss_pred eEEEEEEEEEcCC---CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHHH
Confidence 5899999999852 12459999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 181 -YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.+.++|++|++. +++..|+.+|+.+....... ......++++++++.+++.+..++.+ ..||||||||++|
T Consensus 81 ~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~l 153 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAV-PYDEMHRRVSEALKQVDMLERADYEP------NALSGGQKQRVAI 153 (269)
T ss_pred HHhheeEEEeChHHhcccccHHHHHHhhHHhcCC-CHHHHHHHHHHHHHHcCCchhhhCCc------ccCCHHHHHHHHH
Confidence 246899999974 67778999999876432211 11123456889999999988777644 5999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.. ||++++|++|++++.|++++..+
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999999865 899999999985 5655 99999999999999999887643
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=344.53 Aligned_cols=222 Identities=26% Similarity=0.327 Sum_probs=180.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |+...+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 5 ILQVSDLSVYYN-----KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79 (252)
T ss_pred eEEEEeeEEEEC-----CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence 589999999984 3469999999999999999999999999999999999853 521125999999987521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.++.++|++|+..+++ +||+||+.+.............+++++++++.+++.+...... +..+..||||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~qr 156 (252)
T PRK14239 80 DTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRL--HDSALGLSGGQQQR 156 (252)
T ss_pred chHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHH--hcCcccCCHHHHHH
Confidence 1346999999998887 8999999876433211111123456788899998853221111 23556999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|++++.|+++++
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999975 68999988887 478899999999999999999998876
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 235 ~ 235 (252)
T PRK14239 235 F 235 (252)
T ss_pred H
Confidence 4
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=347.96 Aligned_cols=223 Identities=20% Similarity=0.287 Sum_probs=182.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~--~~~~G~I~~~G~~~~~-- 179 (641)
..++++||++.|. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|++...
T Consensus 18 ~~l~~~nl~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 18 IKMRARDVSVFYG-----EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred ceEEEEeEEEEEC-----CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 3689999999984 346999999999999999999999999999999999998741 0124999999987531
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGer 253 (641)
.++.++|++|++.+++. ||.||+.+....+... ......++++++++.+|+.+...... +..+..||||||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LSgGq~ 169 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRL--HEPGTGLSGGQQ 169 (267)
T ss_pred cchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHh--hCCcccCCHHHH
Confidence 12468999999888875 9999998865432110 11123456789999999964321111 224569999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +.+.++||++++|++|+++..|+++
T Consensus 170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999975 68999988887 4788999999999999999999887
Q ss_pred HHH
Q 006548 334 ACL 336 (641)
Q Consensus 334 ~~~ 336 (641)
++.
T Consensus 248 ~~~ 250 (267)
T PRK14235 248 KMF 250 (267)
T ss_pred HHH
Confidence 764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=342.47 Aligned_cols=215 Identities=28% Similarity=0.403 Sum_probs=185.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 182 (641)
++++|+++.|. .+.+|+|+|+++.+||+++|+||||||||||+++|+|+++|+. |+|.++|.+... ..+
T Consensus 1 i~i~~l~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~i~g~~~~~~~~~~~ 72 (237)
T TIGR00968 1 IEIANISKRFG-----SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDS---GRIRLNGQDATRVHARDR 72 (237)
T ss_pred CEEEEEEEEEC-----CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcCcCChhhc
Confidence 36899999884 3469999999999999999999999999999999999998875 999999987532 235
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++|++.+++.+|+.||+.+....+.. ......+.++++++.+++.+..++.+ ..|||||+||++|||+|
T Consensus 73 ~i~~~~q~~~~~~~~t~~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~lS~G~~qrl~laral 145 (237)
T TIGR00968 73 KIGFVFQHYALFKHLTVRDNIAFGLEIRKH-PKAKIKARVEELLELVQLEGLGDRYP------NQLSGGQRQRVALARAL 145 (237)
T ss_pred CEEEEecChhhccCCcHHHHHHhHHHhcCC-CHHHHHHHHHHHHHHcCCHhHhhCCh------hhCCHHHHHHHHHHHHH
Confidence 699999999999999999999876543211 11123456789999999988887755 49999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.++||++++|++|++++.|+.++..
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999875 89999999987 4788999999999999999999987764
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=350.35 Aligned_cols=222 Identities=20% Similarity=0.276 Sum_probs=186.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..++++|+++.|++. .+.+|+|+|+++.+||+++|+||||||||||+++|+|+++|+...+|+|.++|.+....
T Consensus 4 ~~l~i~~l~~~~~~~---~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~ 80 (282)
T PRK13640 4 NIVEFKHVSFTYPDS---KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVW 80 (282)
T ss_pred ceEEEEEEEEEcCCC---CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHH
Confidence 368999999998521 24699999999999999999999999999999999999988632349999999875321
Q ss_pred --CceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 181 --YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 181 --~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.+.++|++|++. .++..||.||+.+...... ....+.+++++++++.+||.+..++.+ +.||||||||++
T Consensus 81 ~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~LS~G~~qrv~ 153 (282)
T PRK13640 81 DIREKVGIVFQNPDNQFVGATVGDDVAFGLENRA-VPRPEMIKIVRDVLADVGMLDYIDSEP------ANLSGGQKQRVA 153 (282)
T ss_pred HHHhheEEEEECHHHhhccCCHHHHHHhhHHhCC-CCHHHHHHHHHHHHHHCCChhHhcCCc------ccCCHHHHHHHH
Confidence 246899999974 5677899999987643221 111123467889999999998877754 599999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++ ..||++++|++|++++.|+++++.
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999865 899999999885 55 579999999999999999998875
Q ss_pred H
Q 006548 337 Q 337 (641)
Q Consensus 337 ~ 337 (641)
.
T Consensus 232 ~ 232 (282)
T PRK13640 232 S 232 (282)
T ss_pred c
Confidence 4
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=345.96 Aligned_cols=217 Identities=23% Similarity=0.281 Sum_probs=181.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----CCC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEM 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~-----~~~ 179 (641)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+ ...
T Consensus 6 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 6 LLSVRGLTKLYG-----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDA---GEVHYRMRDGQLRDLYA 77 (258)
T ss_pred eEEEeeeEEEcC-----CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCcccccccccc
Confidence 589999999984 2469999999999999999999999999999999999999875 999999986 321
Q ss_pred ---------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCC
Q 006548 180 ---------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKG 247 (641)
Q Consensus 180 ---------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~ 247 (641)
..+.++|++|++ .+++.+|+.||+.+..............+++.++++.+++.+ ..++. +..
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~ 151 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDL------PTT 151 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCC------Ccc
Confidence 123589999997 367788999999764322110111123456788999999974 56654 459
Q ss_pred CCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|+. ..+.++||++++|++|++
T Consensus 152 LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~~g~i 230 (258)
T PRK11701 152 FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMKQGRV 230 (258)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865 89999988887 478889999999999999
Q ss_pred EEEeChhHHH
Q 006548 327 LFFGETLACL 336 (641)
Q Consensus 327 v~~G~~~~~~ 336 (641)
++.|+++++.
T Consensus 231 ~~~~~~~~~~ 240 (258)
T PRK11701 231 VESGLTDQVL 240 (258)
T ss_pred EEeCCHHHHh
Confidence 9999987754
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=335.21 Aligned_cols=195 Identities=31% Similarity=0.527 Sum_probs=167.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~ 180 (641)
.+.|+||++.|+.++ .++.+|+|+|+.+++||+++|+||||||||||+++|+|+.++....+|+|.++|.+... .
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGR-SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccCC-CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 579999999997643 45689999999999999999999999999999999999998321134999999987532 2
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
.+.++|++|++.+++.+||+||+.+..... . +..+..||||||||++|||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------------------~------~~~~~~LS~Ge~qrl~lar 131 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------G------NEFVRGISGGERKRVSIAE 131 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc------------------------c------ccchhhCCHHHHHHHHHHH
Confidence 356999999999999999999997643110 2 2345699999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
||+.+|++|||||||+|||+.++..+.+.|++++++ +.|+|+++||+.+++.++||++++|++|++++.|
T Consensus 132 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 132 ALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999865 6788888888777889999999999999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=343.39 Aligned_cols=222 Identities=20% Similarity=0.272 Sum_probs=181.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~--~~~~G~I~~~G~~~~~--- 179 (641)
.+.++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|. ...+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (251)
T PRK14270 4 KMESKNLNLWYG-----EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV 78 (251)
T ss_pred EEEEEEeEEEEC-----CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccc
Confidence 589999999884 346999999999999999999999999999999999998651 0135999999987531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|++.+++ +|++||+.+..............++++++++.+++.+...... +..+..||||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~qr 155 (251)
T PRK14270 79 DVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDL--KKSALKLSGGQQQR 155 (251)
T ss_pred cHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHh--hCCcccCCHHHHHH
Confidence 1246999999998887 8999999876543211111123456788999998853211111 22456999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++ .++.++||++++|++|++++.|+++++
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999976 58999988887 578899999999999999999998876
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 234 ~ 234 (251)
T PRK14270 234 F 234 (251)
T ss_pred h
Confidence 4
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=343.31 Aligned_cols=223 Identities=21% Similarity=0.331 Sum_probs=181.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~--~~~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 3 IIEIENFSAYYG-----EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred eEEEEeeEEEeC-----CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence 478999999984 34699999999999999999999999999999999999874 10135999999987531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|++.+++ .||+||+.+.............++.++++++.+++.+..+... +..+.+||||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~Gq~qr 154 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSEL--NKPGTRLSGGQQQR 154 (250)
T ss_pred hHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHH--hCChhhcCHHHHHH
Confidence 1346999999998887 8999999876533211111123455788899999864322211 23556999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++ +.+.++||++++|++|+++..|+++++
T Consensus 155 ~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 155 LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999975 68999988887 468899999999999999999998776
Q ss_pred HH
Q 006548 336 LQ 337 (641)
Q Consensus 336 ~~ 337 (641)
.+
T Consensus 233 ~~ 234 (250)
T PRK14262 233 VE 234 (250)
T ss_pred Hh
Confidence 43
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=362.64 Aligned_cols=208 Identities=27% Similarity=0.393 Sum_probs=180.0
Q ss_pred eEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---------C
Q 006548 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---------P 180 (641)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---------~ 180 (641)
||++.|. ++. + |+|+++++||+++|+|||||||||||++|+|+++|++ |+|.++|++... .
T Consensus 4 ~l~~~~~-----~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~---G~I~~~g~~i~~~~~~~~~~~~ 73 (354)
T TIGR02142 4 RFSKRLG-----DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDE---GEIVLNGRTLFDSRKGIFLPPE 73 (354)
T ss_pred EEEEEEC-----CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECccCccccccchh
Confidence 6777773 223 4 9999999999999999999999999999999999875 999999987421 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
++.++|++|++.+++.+||+||+.++.... . ..+.+++++++++.+||.+..++.+ .+|||||||||+|||
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~--~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGqkqRvalAr 144 (354)
T TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRA-R--PSERRISFERVIELLGIGHLLGRLP------GRLSGGEKQRVAIGR 144 (354)
T ss_pred hCCeEEEecCCccCCCCcHHHHHHHHhhcc-C--hhHHHHHHHHHHHHcCChhHhcCCh------hhCCHHHHHHHHHHH
Confidence 346999999999999999999998865321 1 1123456899999999998888755 499999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|+++|++ +++..+||++++|++|+++..|+++++..
T Consensus 145 aL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 145 ALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred HHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 999999999999999999999999999999999865 89999988887 47889999999999999999999888754
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=343.06 Aligned_cols=199 Identities=31% Similarity=0.422 Sum_probs=169.9
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHH
Q 006548 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYY 205 (641)
Q Consensus 126 L~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~ 205 (641)
|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|++........+|++|++.+++.+||+||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS---GGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 578999999999999999999999999999999998875 99999998754322235899999999999999999987
Q ss_pred HHHhcCCCc-cchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHH
Q 006548 206 SALLQLPGF-FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284 (641)
Q Consensus 206 ~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~ 284 (641)
......+.. ..+.+++++++++.+||.+..++.+ .+||||||||++|||+|+.+|++|||||||+|||+.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRP------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 632111111 1123456889999999988877755 499999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 285 LMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 285 ~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
.+.+.|++++++ |+|||+++|++ +++.++||++++|++|+++..|+..+
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCcee
Confidence 999999999865 89999988887 47889999999999999998886543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=342.38 Aligned_cols=222 Identities=23% Similarity=0.338 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~--~~~~~G~I~~~G~~~~~--- 179 (641)
.+.++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 3 KISVKDLDLFYG-----DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred eEEEEEEEEEEC-----CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 478999999984 24699999999999999999999999999999999998753 11135999999987531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.++.++|++|++.+++ +|++||+.+.............++.++++++.+++.+...... +..+..||||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~qr 154 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRL--KKSALGLSGGQQQR 154 (250)
T ss_pred chHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHH--hcCCCCCCHHHHHH
Confidence 1346999999998887 8999999886543211111123456788899998753221111 22456999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+. +.+.++||++++|++|+++..|+++++
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999964 78999988886 478899999999999999999988775
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 233 ~ 233 (250)
T PRK14240 233 F 233 (250)
T ss_pred H
Confidence 4
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=340.31 Aligned_cols=214 Identities=26% Similarity=0.377 Sum_probs=184.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 182 (641)
+.++|+++.+. . ++|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~~-----~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~---G~v~i~g~~~~~~~~~~~ 71 (235)
T cd03299 1 LKVENLSKDWK-----E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS---GKILLNGKDITNLPPEKR 71 (235)
T ss_pred CeeEeEEEEeC-----C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCEEcCcCChhHc
Confidence 36889999884 1 38999999999999999999999999999999999999875 999999987532 235
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++|++.+++.+|+.||+.+...... .......+.+.++++.+||.+..++.+ +.||||||||++|||||
T Consensus 72 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~laral 144 (235)
T cd03299 72 DISYVPQNYALFPHMTVYKNIAYGLKKRK-VDKKEIERKVLEIAEMLGIDHLLNRKP------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred CEEEEeecCccCCCccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCChhHHhcCc------ccCCHHHHHHHHHHHHH
Confidence 79999999999999999999987643321 111223456788999999988887755 49999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.++||++++|++|++++.|+.++..
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999765 89999999987 4788899999999999999999877654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=342.76 Aligned_cols=222 Identities=22% Similarity=0.290 Sum_probs=181.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~--- 179 (641)
.++++||++.|. .+.+|+|+|+++.+||+++|+||||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 78 (251)
T PRK14249 4 KIKIRGVNFFYH-----KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78 (251)
T ss_pred eEEEEEEEEEEC-----CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc
Confidence 588999999984 3469999999999999999999999999999999999998751 124999999986421
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.++.++|++|++.+++. |++||+.+....+........++.++++++.+++.+...... +..+..||||||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~Gq~qr 155 (251)
T PRK14249 79 DVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNL--HKSGLALSGGQQQR 155 (251)
T ss_pred ChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHh--hCCcccCCHHHHHH
Confidence 13569999999988875 999999886543211111123455777888888754322221 23566999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||+++|+. .++.++||++++|++|++++.|+++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNM-QQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 999999999999999999999999999999999999995 588999998887 478899999999999999999998776
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 234 ~ 234 (251)
T PRK14249 234 F 234 (251)
T ss_pred H
Confidence 4
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=345.43 Aligned_cols=223 Identities=21% Similarity=0.282 Sum_probs=182.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~--~~~~G~I~~~G~~~~~-- 179 (641)
..++++||++.+. .+.+|+|+|+++.+||+++|+||||||||||+++|+|+++|. ...+|+|.++|.+...
T Consensus 19 ~~l~~~nl~~~~~-----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 19 IALSTKDLHVYYG-----KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred eEEEEeeEEEEEC-----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 3689999999984 357999999999999999999999999999999999998641 0135999999987531
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
..+.++|++|++.+++ .||+||+.++............++++.++++.++|.+..+... +..++.|||||||
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~--~~~~~~LS~G~~q 170 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDL--HKSALTLSGGQQQ 170 (267)
T ss_pred CChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhh--cCCcccCCHHHHH
Confidence 1346999999988887 6999999886432211111123456788999999864322222 2356799999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++ ++.|||+++|++. ++.++||++++|++|++++.|++++
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999996 4789999888874 7889999999999999999999877
Q ss_pred HH
Q 006548 335 CL 336 (641)
Q Consensus 335 ~~ 336 (641)
+.
T Consensus 249 ~~ 250 (267)
T PRK14237 249 IF 250 (267)
T ss_pred Hh
Confidence 64
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=345.74 Aligned_cols=218 Identities=22% Similarity=0.300 Sum_probs=178.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ +....+|+|.++|++...
T Consensus 21 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 21 ILEVKDLSIYYG-----EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred eEEEEEEEEEeC-----CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 589999999984 3469999999999999999999999999999999999864 210124999999987531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc----hHHhhhhcCCCCCCCCCHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~~LSGG 251 (641)
..+.++|++|++.+++. |++||+.+.............++.+.++++.+++. +..++ .+..||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LSgG 168 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHS------SALSLSGG 168 (268)
T ss_pred cHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhc------CcccCCHH
Confidence 13469999999988875 99999987643221111111345577888888884 33444 45699999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|++|++++.|+
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~ 246 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEYDQ 246 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999965 68999988887 47889999999999999999999
Q ss_pred hhHHH
Q 006548 332 TLACL 336 (641)
Q Consensus 332 ~~~~~ 336 (641)
++++.
T Consensus 247 ~~~~~ 251 (268)
T PRK14248 247 TEQIF 251 (268)
T ss_pred HHHHH
Confidence 87764
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=342.13 Aligned_cols=223 Identities=22% Similarity=0.278 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~--- 179 (641)
.+.++|+++.|+ .+.+|+|+|+.+++||+++|+||||||||||+|+|+|+++|.. ..+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T PRK14272 4 LLSAQDVNIYYG-----DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRV 78 (252)
T ss_pred EEEEeeeEEEEC-----CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCcc
Confidence 578999999984 3469999999999999999999999999999999999987631 125999999987531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.++.++|++|++.+++.+|+.||+.+..............+.++++++.+++.+...... +..++.||||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~qr 156 (252)
T PRK14272 79 DPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRL--KTPATGLSGGQQQR 156 (252)
T ss_pred CHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhh--cCCcccCCHHHHHH
Confidence 124699999999999999999999876432210011112345667777777643211111 23456999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++. ++.++||++++|++|++++.|+++++
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999974 689999888874 78889999999999999999998776
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 235 ~ 235 (252)
T PRK14272 235 F 235 (252)
T ss_pred H
Confidence 4
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=342.27 Aligned_cols=221 Identities=21% Similarity=0.269 Sum_probs=180.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.++.. ..+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 3 KFNIENLDLFYG-----ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred eEEEeccEEEEC-----CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence 578999999984 3469999999999999999999999999999999999987630 125999999987521
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
.++.++|++|++.+++ .||.||+.+.............++++.++++.+++.+...... +..+.+|||||||||
T Consensus 78 ~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~LS~G~~qrv 154 (249)
T PRK14253 78 VADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRL--KSHAFGLSGGQQQRL 154 (249)
T ss_pred hHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHh--hcCcccCCHHHHHHH
Confidence 1246999999999887 8999999876432211111123456778888888854221111 234569999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 155 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 155 CIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999976 58999988887 478999999999999999999988765
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=348.04 Aligned_cols=219 Identities=23% Similarity=0.334 Sum_probs=182.1
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeCCC-
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-----RMYGEVFVNGAKSEM- 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~-----~~~G~I~~~G~~~~~- 179 (641)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. ..+|+|.++|.+...
T Consensus 2 l~~~nl~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~ 76 (272)
T PRK13547 2 LTADHLHVARR-----HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76 (272)
T ss_pred eEEEEEEEEEC-----CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC
Confidence 68999999884 3469999999999999999999999999999999999998750 014999999987532
Q ss_pred C----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCC--C-ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHH
Q 006548 180 P----YGSYGFVERETTLIGSLTVREYLYYSALLQLP--G-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 ~----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~--~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (641)
. .+.++|++|++.+++.+||+||+.+....... . ...+..++++++++.+|+.+..++.+ ..|||||
T Consensus 77 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~ 150 (272)
T PRK13547 77 DAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV------TTLSGGE 150 (272)
T ss_pred CHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc------ccCCHHH
Confidence 1 23589999998766679999999875321100 0 01123456889999999988776644 5999999
Q ss_pred HHHHHHHHHHH---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 253 RRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 253 rqRv~IA~aL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
||||+|||+|+ .+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ +++.++||++++|+
T Consensus 151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~ 229 (272)
T PRK13547 151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAMLA 229 (272)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEE
Confidence 99999999999 599999999999999999999999999999876 89999988887 47888999999999
Q ss_pred CCeEEEEeChhHHH
Q 006548 323 NGNTLFFGETLACL 336 (641)
Q Consensus 323 ~G~iv~~G~~~~~~ 336 (641)
+|++++.|+++++.
T Consensus 230 ~G~i~~~g~~~~~~ 243 (272)
T PRK13547 230 DGAIVAHGAPADVL 243 (272)
T ss_pred CCeEEEecCHHHHc
Confidence 99999999887663
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=345.62 Aligned_cols=218 Identities=20% Similarity=0.228 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|+++ ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|++ |+|.++|++...
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~i~~~~~~~ 78 (277)
T PRK13642 4 ILEVENLVFKYEKE--SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE---GKVKIDGELLTAENVWN 78 (277)
T ss_pred eEEEEEEEEEcCCC--CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---CEEEECCEECCcCCHHH
Confidence 58999999998531 12459999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 ~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
..+.++|++|++. .++..||.||+.++...... ...+..++++++++.+||.+..++.+ ..||||||||++|
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~l 151 (277)
T PRK13642 79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGI-PREEMIKRVDEALLAVNMLDFKTREP------ARLSGGQKQRVAV 151 (277)
T ss_pred HhcceEEEEECHHHhhccCCHHHHHHhhHHHcCC-CHHHHHHHHHHHHHHCCCHhHhhCCc------ccCCHHHHHHHHH
Confidence 1346999999974 56678999999876432211 11123456889999999988877754 5999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|+.. ++. .||++++|++|+++..|+++++.
T Consensus 152 AraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 152 AGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999875 999999888875 554 69999999999999999988775
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=340.65 Aligned_cols=199 Identities=26% Similarity=0.343 Sum_probs=169.6
Q ss_pred cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CCceEEEEc-CCCccCC
Q 006548 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PYGSYGFVE-RETTLIG 195 (641)
Q Consensus 121 ~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~~~~~yv~-Q~~~l~~ 195 (641)
+.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..+.++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS---GEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 34579999999999999999999999999999999999998875 999999986421 134689997 5567888
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCC
Q 006548 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275 (641)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPt 275 (641)
.+||+||+.+....... ...+..++++++++.+|+.+..++.+. .||||||||++||++|+.+|++|||||||
T Consensus 109 ~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~------~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 109 DLPVIDSFYLLAAIYDL-PPARFKKRLDELSELLDLEELLDTPVR------QLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhHhcCChh------hCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999999876543211 111234567889999999888877554 89999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 276 YHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 276 sgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999865 88999988887 4788999999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=334.80 Aligned_cols=200 Identities=27% Similarity=0.394 Sum_probs=171.6
Q ss_pred eEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---------C
Q 006548 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---------P 180 (641)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---------~ 180 (641)
||+++|.+ +.+ |+|+++++ |+++|+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 5 ~l~~~~~~-----~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~~~ 73 (214)
T cd03297 5 DIEKRLPD-----FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDG---GTIVLNGTVLFDSRKKINLPPQ 73 (214)
T ss_pred eeeEecCC-----eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEecccccchhhhhhH
Confidence 88888842 334 99999999 9999999999999999999999998875 999999986421 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
.+.++|++|++.+++.+|++||+.+..... .....+++++++++.+|+.+..++.+ ..||||||||++|||
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~la~ 144 (214)
T cd03297 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRK---RNREDRISVDELLDLLGLDHLLNRYP------AQLSGGEKQRVALAR 144 (214)
T ss_pred hhcEEEEecCCccCCCCCHHHHHHHHHhhC---CHHHHHHHHHHHHHHcCCHhHhhcCc------ccCCHHHHHHHHHHH
Confidence 246999999999999999999998764321 11123456889999999988777654 599999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|+++|++ +++.++||++++|++|+++..|
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999865 89999988887 4788899999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=342.16 Aligned_cols=224 Identities=22% Similarity=0.303 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.++++ ..+|+|.++|++...
T Consensus 7 ~l~~~nl~~~~~-----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~ 81 (261)
T PRK14258 7 AIKVNNLSFYYD-----TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81 (261)
T ss_pred eEEEeeEEEEeC-----CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc
Confidence 589999999984 2369999999999999999999999999999999999998741 125999999987421
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|+..+++ +|++||+.+...........+..+++.++++.+++.+..+... +..+..||||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LSgGq~qr 158 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKI--HKSALDLSGGQQQR 158 (261)
T ss_pred chHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHh--cCCcccCCHHHHHH
Confidence 1246999999988887 8999999876432211011123456788999999864322222 23556999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeC-----CeEEEE
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSN-----GNTLFF 329 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~-----G~iv~~ 329 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|+|+++|++ .++.++||+|++|++ |++++.
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEEe
Confidence 9999999999999999999999999999999999999975 589999988887 578999999999999 999999
Q ss_pred eChhHHHH
Q 006548 330 GETLACLQ 337 (641)
Q Consensus 330 G~~~~~~~ 337 (641)
|+++++.+
T Consensus 238 ~~~~~~~~ 245 (261)
T PRK14258 238 GLTKKIFN 245 (261)
T ss_pred CCHHHHHh
Confidence 99988743
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=343.93 Aligned_cols=222 Identities=23% Similarity=0.295 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|++++.. ..+|+|.++|.+...
T Consensus 25 ~l~~~nl~~~~~-----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 25 ALEVRNLNLFYG-----DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred EEEEEEEEEEEC-----CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 689999999984 2469999999999999999999999999999999999987410 135999999987531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.++.++|++|++.+++. ||+||+.+.............+++++++++.+++.+...... +..+..||||||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~Gq~qr 176 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRL--HENAFGLSGGQQQR 176 (272)
T ss_pred CHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHh--hCCcccCCHHHHHH
Confidence 13469999999988876 999999876433211111123456888999999864221111 23556999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++ +++.++||++++|++|+++..|++++.
T Consensus 177 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 177 LVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999999976 68999988887 478899999999999999999988765
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 255 ~ 255 (272)
T PRK14236 255 F 255 (272)
T ss_pred h
Confidence 3
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=345.34 Aligned_cols=222 Identities=21% Similarity=0.313 Sum_probs=180.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~-- 179 (641)
..++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++.. ..+|+|.++|.+...
T Consensus 12 ~~l~i~nl~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 12 IIISLQNVTISYG-----TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred ceEEEEeEEEEEC-----CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 3699999999984 3469999999999999999999999999999999999986310 135999999987421
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
.++.++|++|++.+++ .||+||+.+.+..+. .....+++++++++.+++....+... +..+..|||||||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~q 161 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING--YTGDMDELVERSLRKAAVWDECKDKL--NESGYSLSGGQQQ 161 (269)
T ss_pred CCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC--CcHHHHHHHHHHHHHhCCcchhhhhh--CCCcccCCHHHHH
Confidence 1246999999998887 499999988654321 11123456778889888743211111 2355699999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC-----------
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN----------- 323 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~----------- 323 (641)
||+|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||+++|++ +++.++||++++|++
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEecccccccccccc
Confidence 99999999999999999999999999999999999999964 68999988887 578899999999996
Q ss_pred CeEEEEeChhHHHH
Q 006548 324 GNTLFFGETLACLQ 337 (641)
Q Consensus 324 G~iv~~G~~~~~~~ 337 (641)
|++++.|+++++.+
T Consensus 240 g~~~~~~~~~~~~~ 253 (269)
T PRK14259 240 GYLVEFNETKKIFN 253 (269)
T ss_pred ceEEEeCCHHHHHh
Confidence 67899999988754
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=340.07 Aligned_cols=222 Identities=20% Similarity=0.271 Sum_probs=180.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~--~~~~~G~I~~~G~~~~~--- 179 (641)
.+.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|++...
T Consensus 6 ~i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 80 (253)
T PRK14261 6 ILSTKNLNLWYG-----EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80 (253)
T ss_pred eEEEeeeEEEEC-----CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence 589999999984 34699999999999999999999999999999999998753 11135999999987532
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|++.+++. ||+||+.+....+........++.+.++++.+++.+...... +..+..||||||||
T Consensus 81 ~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~qr 157 (253)
T PRK14261 81 DVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRL--HDSALSLSGGQQQR 157 (253)
T ss_pred chhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHh--hcChhhCCHHHHHH
Confidence 12469999999988874 999999887543211111123456788889988853221111 23556999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999976 58999988887 478889999999999999999998776
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 236 ~ 236 (253)
T PRK14261 236 F 236 (253)
T ss_pred H
Confidence 4
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=339.48 Aligned_cols=222 Identities=21% Similarity=0.281 Sum_probs=178.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~--- 179 (641)
.++++||++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ |+...+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14255 5 IITSSDVHLFYG-----KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE 79 (252)
T ss_pred eEEEEeEEEEEC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc
Confidence 589999999984 2469999999999999999999999999999999999865 321135999999986521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|++.+++ .||+||+.+....+........++++.+.++.+++.+...... +..+..||||||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~--~~~~~~LS~Gq~qr 156 (252)
T PRK14255 80 DVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHL--HESALSLSGGQQQR 156 (252)
T ss_pred cHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHH--hcCcccCCHHHHHH
Confidence 1346999999998887 6999999876543211111112345677888887742211111 23456999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++ .++.++||+|++|++|+++..|++.+.
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSM-HQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999976 58999988887 478899999999999999999988776
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 235 ~ 235 (252)
T PRK14255 235 F 235 (252)
T ss_pred h
Confidence 4
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=339.80 Aligned_cols=218 Identities=22% Similarity=0.288 Sum_probs=179.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~--- 179 (641)
.+.++|+++.|+ .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 4 IISAKDVHLSYG-----NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred eEEEEeeEEEEC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 589999999984 2469999999999999999999999999999999999986 210135999999987521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc----hHHhhhhcCCCCCCCCCHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~~LSGG 251 (641)
.++.++|++|++.+++ .||+||+.+.............++.++++++.+++. +..++ .+.+||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LS~G 151 (251)
T PRK14251 79 DLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDR------NAQAFSGG 151 (251)
T ss_pred hHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhcc------ChhhCCHH
Confidence 1346999999998886 799999987643221111111335678889999984 23333 45699999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|++|+++..|+
T Consensus 152 q~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14251 152 QQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEAGP 229 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999964 68999988887 47888999999999999999999
Q ss_pred hhHHH
Q 006548 332 TLACL 336 (641)
Q Consensus 332 ~~~~~ 336 (641)
++++.
T Consensus 230 ~~~~~ 234 (251)
T PRK14251 230 TEEMF 234 (251)
T ss_pred HHHHH
Confidence 87764
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=342.52 Aligned_cols=222 Identities=22% Similarity=0.291 Sum_probs=181.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCC--ceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR--MYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~--~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+|+|+|+++++.. .+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (259)
T PRK14260 7 AIKVKDLSFYYN-----TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81 (259)
T ss_pred eEEEEEEEEEEC-----CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence 589999999984 24699999999999999999999999999999999999875311 35999999986521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|++.+++ +||+||+.+....+.........+.++++++.+++.+...... +..+..||||||||
T Consensus 82 ~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~qr 158 (259)
T PRK14260 82 NINRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKL--NKSALGLSGGQQQR 158 (259)
T ss_pred chHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHh--cCCcccCCHHHHHH
Confidence 1246999999998887 8999999876543211111123456788899999853221111 23566999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe-----CCeEEEEe
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS-----NGNTLFFG 330 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~-----~G~iv~~G 330 (641)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|+ +|++++.|
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999975 58999988887 58889999999998 59999999
Q ss_pred ChhHHH
Q 006548 331 ETLACL 336 (641)
Q Consensus 331 ~~~~~~ 336 (641)
+++++.
T Consensus 237 ~~~~~~ 242 (259)
T PRK14260 237 VTTQIF 242 (259)
T ss_pred CHHHHh
Confidence 998764
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=345.86 Aligned_cols=219 Identities=23% Similarity=0.299 Sum_probs=179.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~-- 179 (641)
..+.++||++.|. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.+ |....+|+|.++|.+...
T Consensus 38 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~ 112 (286)
T PRK14275 38 PHVVAKNFSIYYG-----EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKF 112 (286)
T ss_pred eEEEEeeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcc
Confidence 4689999999984 2469999999999999999999999999999999999854 300024999999986421
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc----hHHhhhhcCCCCCCCCCH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPC 250 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~~LSG 250 (641)
.++.++|++|++.+++. ||.||+.+.............++++.++++.+++. +..++ .+..|||
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~------~~~~LSg 185 (286)
T PRK14275 113 TDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDK------NALGLSG 185 (286)
T ss_pred cchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhC------ChhhCCH
Confidence 13469999999988875 99999988653321111112345677888998874 33343 4569999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.++||++++|++|+++..|
T Consensus 186 Gq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~~~g 263 (286)
T PRK14275 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNM-QQASRVSDYTMFFYEGVLVEHA 263 (286)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999975 58999988887 4788899999999999999999
Q ss_pred ChhHHH
Q 006548 331 ETLACL 336 (641)
Q Consensus 331 ~~~~~~ 336 (641)
+++++.
T Consensus 264 ~~~~~~ 269 (286)
T PRK14275 264 PTAQLF 269 (286)
T ss_pred CHHHHH
Confidence 987764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=339.98 Aligned_cols=216 Identities=19% Similarity=0.230 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCC-ceeEEEECCEeCCC---C
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR-MYGEVFVNGAKSEM---P 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~-~~G~I~~~G~~~~~---~ 180 (641)
.++++|+++.+ + +.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|... .+|+|.++|++... .
T Consensus 4 ~l~~~~l~~~~-~-----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A-----QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR 77 (254)
T ss_pred EEEEeCeEEEe-c-----cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccc
Confidence 58999999988 2 3599999999999999999999999999999999999987100 24999999987532 1
Q ss_pred CceEEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch---HHhhhhcCCCCCCCCCHHHHHH
Q 006548 181 YGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD---YANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 181 ~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~ig~~~~~~~LSGGerqR 255 (641)
.+.++|++|++. +.+..|+.+++.+.+.... . ....+++.++++.++|.+ ..++ .+..||||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~l~~~~l~~~~~~~~~------~~~~LS~Gq~qr 148 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALG-K--PADDATLTAALEAVGLENAARVLKL------YPFEMSGGMLQR 148 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcC-C--ChHHHHHHHHHHHcCCCChhhhhhc------CCcccCHHHHHH
Confidence 246999999974 4566899999876543221 1 123456889999999976 3455 445999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ +++.++||++++|++|+++..|++++
T Consensus 149 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 227 (254)
T PRK10418 149 MMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVET 227 (254)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999764 89999988887 47888999999999999999999877
Q ss_pred HH
Q 006548 335 CL 336 (641)
Q Consensus 335 ~~ 336 (641)
+.
T Consensus 228 ~~ 229 (254)
T PRK10418 228 LF 229 (254)
T ss_pred Hh
Confidence 64
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=315.79 Aligned_cols=211 Identities=28% Similarity=0.324 Sum_probs=184.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~------ 178 (641)
.++++++++++... .....||++|++.+++||.+||+|||||||||||-+++|+..|++ |+|.+.|++..
T Consensus 6 ii~~~~l~ktvg~~-~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ss---GeV~l~G~~L~~ldEd~ 81 (228)
T COG4181 6 IIEVHHLSKTVGQG-EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSS---GEVRLLGQPLHKLDEDA 81 (228)
T ss_pred eeehhhhhhhhcCC-CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCC---ceEEEcCcchhhcCHHH
Confidence 57899999888543 245689999999999999999999999999999999999999876 99999998642
Q ss_pred ---CCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 179 ---MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 179 ---~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.+.+++|||+|...+.|+||..||+..++.++-.. ..+......+.|+.+||.+..+. +|.+|||||+||
T Consensus 82 rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~-~~~~~~~A~~lL~~vGLg~Rl~H------yP~qLSGGEQQR 154 (228)
T COG4181 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGES-SADSRAGAKALLEAVGLGKRLTH------YPAQLSGGEQQR 154 (228)
T ss_pred HHHhhccceeEEEEeeeccccchhhhhccchhhhcCCc-cccHHHHHHHHHHHhCccccccc------CccccCchHHHH
Confidence 12367999999999999999999999988776421 12345568899999999877765 667999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
|+||||++.+|+|||.||||-+||..+..+|.++|-.+.+ .|.|.|+++|+| .+..-|||.+-|.+|+++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 9999999999999999999999999999999999999985 499999999998 4677899999999999874
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=339.63 Aligned_cols=217 Identities=22% Similarity=0.285 Sum_probs=179.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----CCC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEM 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~-----~~~ 179 (641)
.++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|.+ ...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 3 LLQVSGLSKSYG-----GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH---GTATYIMRSGAELELYQ 74 (253)
T ss_pred eEEEeeeEEEeC-----CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEEeccccccccccc
Confidence 589999999984 2468999999999999999999999999999999999998875 999999865 321
Q ss_pred -C--------CceEEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCC
Q 006548 180 -P--------YGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKG 247 (641)
Q Consensus 180 -~--------~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~ 247 (641)
. .+.++|++|++. +.+.+|+.||+.+..............+.++++++.+++. +..++. +..
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~------~~~ 148 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDL------PRA 148 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcC------chh
Confidence 1 135899999974 4566799999965432111011112346788999999996 466664 459
Q ss_pred CCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|+++|++ .++..+||++++|++|++
T Consensus 149 LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~~G~i 227 (253)
T TIGR02323 149 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQQGRV 227 (253)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998754 89999988886 578889999999999999
Q ss_pred EEEeChhHHH
Q 006548 327 LFFGETLACL 336 (641)
Q Consensus 327 v~~G~~~~~~ 336 (641)
++.|+++++.
T Consensus 228 ~~~~~~~~~~ 237 (253)
T TIGR02323 228 VESGLTDQVL 237 (253)
T ss_pred EEECCHHHHh
Confidence 9999887654
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=342.99 Aligned_cols=224 Identities=19% Similarity=0.228 Sum_probs=182.7
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~--~~~~G~I~~~G~~~~~-- 179 (641)
..+.++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|.+...
T Consensus 20 ~~l~i~nl~~~~~-----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 94 (276)
T PRK14271 20 PAMAAVNLTLGFA-----GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94 (276)
T ss_pred cEEEEeeEEEEEC-----CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc
Confidence 3689999999994 357999999999999999999999999999999999998752 0135999999987531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|++.+++ .||+||+.+...........+..+++.++++.+++.+..+... +..+..||||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l--~~~~~~LSgGq~qr 171 (276)
T PRK14271 95 DVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRL--SDSPFRLSGGQQQL 171 (276)
T ss_pred hhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHh--hCCcccCCHHHHHH
Confidence 1346999999998887 8999999876432211111123345678899999975432221 23456999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999976 48999988887 478899999999999999999998876
Q ss_pred HH
Q 006548 336 LQ 337 (641)
Q Consensus 336 ~~ 337 (641)
.+
T Consensus 250 ~~ 251 (276)
T PRK14271 250 FS 251 (276)
T ss_pred Hh
Confidence 43
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=339.76 Aligned_cols=221 Identities=19% Similarity=0.291 Sum_probs=179.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~---- 179 (641)
-+++||++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 6 ~~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 80 (251)
T PRK14244 6 ASVKNLNLWYG-----SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTN 80 (251)
T ss_pred EEeeeEEEEEC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccc
Confidence 47899999884 3479999999999999999999999999999999999976 211135999999986421
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcC-CCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.++.++|++|++.+++. ||+||+.+....+. .......++.++++++.+||.+...+.. +..+.+||||||||
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~Gq~qr 157 (251)
T PRK14244 81 VVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRL--KDSAFELSGGQQQR 157 (251)
T ss_pred hHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHh--hcChhhCCHHHHHH
Confidence 13469999999988875 99999987643321 1111123456788999999965322211 22456999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++ +|+|||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999996 4899999999874 78889999999999999999988765
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 236 ~ 236 (251)
T PRK14244 236 F 236 (251)
T ss_pred h
Confidence 4
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=376.34 Aligned_cols=218 Identities=19% Similarity=0.319 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ ..+|+|.++|.+....
T Consensus 5 ~l~~~nl~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 5 LLEMKNITKTFG-----GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred eEEEeeeEEEeC-----CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHH
Confidence 589999999984 346999999999999999999999999999999999999862 0249999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcC-CC-ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQL-PG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
++.++||+|++.+++.+||+||+.++...+. .. ...+..++++++++.+|+.+..++.+ .+|||||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGqkqrv 152 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV------GNLGLGQQQLV 152 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch------hhCCHHHHHHH
Confidence 2469999999999999999999987643221 10 11123456889999999987777755 49999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.|+++++
T Consensus 153 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999999999999999999999999999987899999988876 578899999999999999999998765
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=383.22 Aligned_cols=218 Identities=22% Similarity=0.348 Sum_probs=187.7
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++|++|+|.. ....+|+|+|++++|||.+||+|+||||||||+|+|+|+++|.. |+|++||.+...
T Consensus 470 g~I~~~nvsf~y~~---~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~---G~I~~dg~dl~~i~~~ 543 (709)
T COG2274 470 GEIEFENVSFRYGP---DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ---GRILLDGVDLNDIDLA 543 (709)
T ss_pred ceEEEEEEEEEeCC---CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEeHHhcCHH
Confidence 36999999999963 23479999999999999999999999999999999999999976 999999998532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCC-----CCCCCHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~-----~~~LSGGer 253 (641)
.++++|||+||+.+|. .|++||+.++ .|. ...+.+.++++..|..+.....+.|.++ ..+||||||
T Consensus 544 ~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~----~p~---~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQr 615 (709)
T COG2274 544 SLRRQVGYVLQDPFLFS-GSIRENIALG----NPE---ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR 615 (709)
T ss_pred HHHhheeEEcccchhhc-CcHHHHHhcC----CCC---CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHH
Confidence 2468999999999984 6999999763 222 2456678888888888777666554433 357999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
||++|||||+++|+||+||||||+||+.+.+.|.+.|+++.. |+|+|+++|+++ ..+.||||+||++|+++.+|+.+
T Consensus 616 QrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ 692 (709)
T COG2274 616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHE 692 (709)
T ss_pred HHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEEEccCCceeccCCHH
Confidence 999999999999999999999999999999999999999874 689999999984 57889999999999999999999
Q ss_pred HHHHH
Q 006548 334 ACLQH 338 (641)
Q Consensus 334 ~~~~~ 338 (641)
++.+.
T Consensus 693 ell~~ 697 (709)
T COG2274 693 ELLAQ 697 (709)
T ss_pred HHHHh
Confidence 88753
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=375.99 Aligned_cols=216 Identities=20% Similarity=0.356 Sum_probs=186.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||+++|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+....
T Consensus 4 ~i~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 4 LLQLKGIDKAFP-----GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDA---GSILYLGKEVTFNGPKS 75 (501)
T ss_pred eEEEeeeEEEeC-----CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999999875 9999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcC--CC-ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQL--PG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~--~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.+.++|++|++.+++.+||+||+.++..... .. ...+.+++++++++.+||.+..++.++ .||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qr 149 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG------ELSIGEQQM 149 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh------hCCHHHHHH
Confidence 2469999999999999999999987643210 10 111234568899999999887777554 999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||+|++|++|+++..|+++++
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999999999999999999999999999999999987799999988887 578899999999999999999988754
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=336.28 Aligned_cols=201 Identities=22% Similarity=0.272 Sum_probs=170.3
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC----CCCceeEEEECCEeCCC---CCceEEEEcCCCc--cCC
Q 006548 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH----SARMYGEVFVNGAKSEM---PYGSYGFVERETT--LIG 195 (641)
Q Consensus 125 iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~----~~~~~G~I~~~G~~~~~---~~~~~~yv~Q~~~--l~~ 195 (641)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+| ++ |+|.++|++... ..+.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~---G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTS---GEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccc---cEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57899999999999999999999999999999999987 54 999999987532 1246999999974 567
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc---hHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEe
Q 006548 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS---DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272 (641)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLD 272 (641)
.+|++|++.+....... .....+++++++++.+++. +..++. +..|||||||||+|||||+.+|++||||
T Consensus 78 ~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGK-LSKQARALILEALEAVGLPDPEEVLKKY------PFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred ccCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHcCCCchHHHHhCC------hhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 78999999775432211 1112345689999999997 455554 4599999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 273 EPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 273 EPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||+|||+.++..+.+.|++++++ |+|||+++|++ +++..+||++++|++|+++..|+++++.
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999864 89999988887 4788999999999999999999987764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=373.61 Aligned_cols=212 Identities=21% Similarity=0.319 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||++.|. .+.+|+|+|+.+++||+++|+||||||||||||+|+|+++|++ |+|.++|.+....
T Consensus 11 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 82 (510)
T PRK15439 11 LLCARSISKQYS-----GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS---GTLEIGGNPCARLTPAK 82 (510)
T ss_pred eEEEEeEEEEeC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999999875 9999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.+.++|++|++.+++.+||+||+.+... . ..+.+++++++++.+||.+..++.++ +|||||||||+|
T Consensus 83 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~----~-~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qrv~l 151 (510)
T PRK15439 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLP----K-RQASMQKMKQLLAALGCQLDLDSSAG------SLEVADRQIVEI 151 (510)
T ss_pred HHhCCEEEEeccCccCCCCcHHHHhhcccc----c-chHHHHHHHHHHHHcCCCccccCChh------hCCHHHHHHHHH
Confidence 2359999999999999999999987531 1 11234678899999999887777554 999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||++++|++|++++.|++++..
T Consensus 152 a~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 152 LRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 9999999999999999999999999999999999988899999988886 4788999999999999999999987653
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=342.06 Aligned_cols=222 Identities=23% Similarity=0.236 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEecc----cccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 006548 105 SVVWKDLTVTIKGK----RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~----~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~- 179 (641)
.++++||++.+... ....+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~s---G~i~~~g~~~~~~ 79 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ---GNVSWRGEPLAKL 79 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccc
Confidence 47899999998520 0013579999999999999999999999999999999999998865 999999986431
Q ss_pred -------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCC
Q 006548 180 -------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (641)
Q Consensus 180 -------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LS 249 (641)
..+.++|++|+. .+++..|+.|++.+...............+++++++.+|+. +..++. +..||
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~~LS 153 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKR------PPQLS 153 (268)
T ss_pred ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCC------CccCC
Confidence 124699999997 46678999999876532111111112345689999999996 566664 45999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 250 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|+++|++ +++.++||++++|++|++++
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999999865 89999988887 47888999999999999999
Q ss_pred EeChhHHH
Q 006548 329 FGETLACL 336 (641)
Q Consensus 329 ~G~~~~~~ 336 (641)
.|++++..
T Consensus 233 ~g~~~~~~ 240 (268)
T PRK10419 233 TQPVGDKL 240 (268)
T ss_pred eCChhhcc
Confidence 99987754
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=341.38 Aligned_cols=222 Identities=19% Similarity=0.274 Sum_probs=177.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|.+...
T Consensus 24 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 24 VFDTQNLNLWYG-----EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred EEEEeeeEEEEC-----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 589999999984 3469999999999999999999999999999999999986 211135999999987521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|++.+++ .||+||+.++............++.+.++++.+++.+-..... +..+..||||||||
T Consensus 99 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~~LSgGe~qr 175 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL--HDNAYGLSGGQQQR 175 (271)
T ss_pred cHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHH--hcCcccCCHHHHHH
Confidence 1346999999998887 5999999886543211111112345677777776532111111 23556999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|+++++
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999976 68999988886 478899999999999999999998765
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 254 ~ 254 (271)
T PRK14238 254 F 254 (271)
T ss_pred H
Confidence 3
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-42 Score=319.12 Aligned_cols=218 Identities=25% Similarity=0.294 Sum_probs=189.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||.++| +...+|++||+..+.|+++.|+|.|||||||+|+||.=+..|+. |.|.+||+.+..
T Consensus 6 ~l~v~dlHK~~-----G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~---G~I~v~geei~~k~~~~ 77 (256)
T COG4598 6 ALEVEDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA---GSIRVNGEEIRLKRDKD 77 (256)
T ss_pred ceehhHHHhhc-----ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCC---ceEEECCeEEEeeeCCC
Confidence 58889998888 45679999999999999999999999999999999999999876 999999975311
Q ss_pred ------C-------CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCC
Q 006548 180 ------P-------YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246 (641)
Q Consensus 180 ------~-------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 246 (641)
. +.+.++|+|+..|..++||.||+..+..--+.....+..++.+..|..+|+.+..+. ||.
T Consensus 78 G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~------YP~ 151 (256)
T COG4598 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADA------YPA 151 (256)
T ss_pred CCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhc------Ccc
Confidence 0 124799999999999999999997654322222223355678889999999887775 667
Q ss_pred CCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
.|||||+||++|||||+.+|+++++|||||+|||.-.-++++.+++|+++|+|.++++|.. ..+.+...+|+.|++|.|
T Consensus 152 ~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM-~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 152 HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM-GFARDVSSHVIFLHQGKI 230 (256)
T ss_pred ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh-hHHHhhhhheEEeeccee
Confidence 9999999999999999999999999999999999999999999999999999999988876 588899999999999999
Q ss_pred EEEeChhHHHH
Q 006548 327 LFFGETLACLQ 337 (641)
Q Consensus 327 v~~G~~~~~~~ 337 (641)
-+.|+|++++.
T Consensus 231 EE~G~P~qvf~ 241 (256)
T COG4598 231 EEEGPPEQVFG 241 (256)
T ss_pred cccCChHHHhc
Confidence 99999998753
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=331.76 Aligned_cols=209 Identities=28% Similarity=0.403 Sum_probs=177.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++|+++.+..+. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 2 ISIRNLNHYYGHGS-LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE---GSLKVLGQELYGASEKEL 77 (220)
T ss_pred EEEEEEEEEccCCC-cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEhHhcCHhHH
Confidence 68999999885321 12579999999999999999999999999999999999998875 999999987531
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
..+.++|++|++.+++.+|+.||+.+...........+..++++++++.+||.+..++.+ +.||||||||++
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~lS~G~~qrv~ 151 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP------HNLSGGQKQRVA 151 (220)
T ss_pred HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh------hhCCHHHHHHHH
Confidence 125699999999999989999999886543211111223457899999999988887754 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .++|+|+++|++. +.++||++++|++|++
T Consensus 152 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 152 IARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999986 4899999999874 4589999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=349.02 Aligned_cols=226 Identities=19% Similarity=0.235 Sum_probs=184.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~--~~~~G~I~~~G~~~~~-- 179 (641)
..++++|+++.|.. ..+.+|+|+|+++++||++||+|+||||||||+++|+|+.++. ...+|+|.++|.++..
T Consensus 79 ~~i~~~nls~~y~~---~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 79 NVFEIRNFNFWYMN---RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred ceEEEEeeEEEecC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 46899999999953 2346999999999999999999999999999999999998631 0135999999998631
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
.++.++|++|++.+++ .|++||+.|+............++.++++++.++|.+..+..+ +..+..|||||||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~--~~~~~~LSgGqkq 232 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDL--DKAGNALSGGQQQ 232 (329)
T ss_pred cchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhh--hCCcccCCHHHHH
Confidence 1357999999998885 7999999986432211111112344678899998854333333 2466799999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|+|+++|++ ..+.++||||++|++|++++.|++++
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e~g~~~~ 310 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSM-AQAQRISDETVFFYQGWIEEAGETKT 310 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 68999988887 47888999999999999999999998
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+..
T Consensus 311 l~~ 313 (329)
T PRK14257 311 IFI 313 (329)
T ss_pred Hhc
Confidence 753
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=378.63 Aligned_cols=223 Identities=21% Similarity=0.223 Sum_probs=187.9
Q ss_pred ceEEEEeEEEEEeccc------ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 006548 104 ASVVWKDLTVTIKGKR------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~------~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~ 177 (641)
..++++||++.|...+ ...+.+|+||||.+++||+++|+|+||||||||+|+|+|+++|++ |+|.++|++.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~---G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQG---GEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---cEEEECCEEC
Confidence 3689999999985211 012469999999999999999999999999999999999998875 9999999865
Q ss_pred CC--------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCC
Q 006548 178 EM--------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMK 246 (641)
Q Consensus 178 ~~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~ 246 (641)
.. .++.++||+|++ .+++.+||.||+.+...........+.++++.++++.+||. +..++. ++
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~------~~ 462 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY------PH 462 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCC------cc
Confidence 31 124699999996 58899999999987654321101112346788999999995 566664 45
Q ss_pred CCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||+++|+. +.+.++||+|++|++|+
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYLGQ 541 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999865 89999988876 57889999999999999
Q ss_pred EEEEeChhHHH
Q 006548 326 TLFFGETLACL 336 (641)
Q Consensus 326 iv~~G~~~~~~ 336 (641)
+++.|++++++
T Consensus 542 iv~~g~~~~i~ 552 (623)
T PRK10261 542 IVEIGPRRAVF 552 (623)
T ss_pred EEEecCHHHHh
Confidence 99999998875
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=341.65 Aligned_cols=217 Identities=22% Similarity=0.287 Sum_probs=179.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~-- 179 (641)
..++++||++.|. .+.+|+|+|+.+++||+++|+||||||||||+++|+|++++.. ..+|+|.++|.+...
T Consensus 38 ~~l~i~~l~~~~~-----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 38 TVIEARDLNVFYG-----DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred ceEEEEEEEEEEC-----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 4689999999984 2469999999999999999999999999999999999986310 124999999987421
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch----HHhhhhcCCCCCCCCCH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD----YANKLIGGHCYMKGLPC 250 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~~LSG 250 (641)
.++.++|++|+..+++. ||+||+.+....... . ....++++++++.++|.+ ..++ .+.+|||
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~-~-~~~~~~~~~~l~~~~l~~~i~~~~~~------~~~~LSg 183 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGY-D-GDIDERVEESLRRAALWDEVKDQLDS------SGLDLSG 183 (285)
T ss_pred cchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCC-c-HHHHHHHHHHHHHcCCCchhHHHHhC------CcccCCH
Confidence 13569999999988875 999999876543211 1 123456889999999853 3343 4569999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEE-EEeCCeEEEE
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC-LLSNGNTLFF 329 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~-vL~~G~iv~~ 329 (641)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ .|||+++|++ .++.++|||++ +|++|+++..
T Consensus 184 Ge~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNM-QQAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEEe
Confidence 9999999999999999999999999999999999999999999864 7999988887 57888999975 5799999999
Q ss_pred eChhHHH
Q 006548 330 GETLACL 336 (641)
Q Consensus 330 G~~~~~~ 336 (641)
|+++++.
T Consensus 262 g~~~~~~ 268 (285)
T PRK14254 262 DDTDKIF 268 (285)
T ss_pred CCHHHHH
Confidence 9887653
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=335.68 Aligned_cols=215 Identities=25% Similarity=0.354 Sum_probs=172.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 180 (641)
++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (237)
T cd03252 1 ITFEHVRFRYKP---DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPEN---GRVLVDGHDLALADPAWL 74 (237)
T ss_pred CEEEEEEEecCC---CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCeehHhcCHHHH
Confidence 368999998842 13469999999999999999999999999999999999998875 999999986421 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqR 255 (641)
++.++|++|++.+++ .||+||+.+... .. ....+.+.++..++.+..+....+ +..+.+||||||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~----~~---~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qr 146 (237)
T cd03252 75 RRQVGVVLQENVLFN-RSIRDNIALADP----GM---SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQR 146 (237)
T ss_pred hhcEEEEcCCchhcc-chHHHHhhccCC----CC---CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHH
Confidence 346999999988775 699999976321 11 112233444555554443322100 22457999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++. ++ ..||++++|++|++++.|+++++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~ 223 (237)
T cd03252 147 IAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGSHDEL 223 (237)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999974 899999999985 55 46999999999999999998776
Q ss_pred HH
Q 006548 336 LQ 337 (641)
Q Consensus 336 ~~ 337 (641)
.+
T Consensus 224 ~~ 225 (237)
T cd03252 224 LA 225 (237)
T ss_pred Hh
Confidence 54
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=314.72 Aligned_cols=215 Identities=28% Similarity=0.374 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.+..++++.+|.++ ...+|+|+|+.+.+||.++++||||||||||||+++|+.+|.. |+|.+||+++.-+-..-
T Consensus 3 ~l~~~~~sl~y~g~---~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~---G~i~l~~r~i~gPgaer 76 (259)
T COG4525 3 MLNVSHLSLSYEGK---PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR---GSIQLNGRRIEGPGAER 76 (259)
T ss_pred eeehhheEEecCCc---chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCccc---ceEEECCEeccCCCccc
Confidence 46778899999653 2569999999999999999999999999999999999999976 99999999887666667
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHh
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (641)
|.|+|++.++|.+||.||+.|+.+++--. ...+.+++.+.+..+||.+..++.+ .+|||||||||.|||||+.
T Consensus 77 gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~-k~~R~~~a~q~l~~VgL~~~~~~~i------~qLSGGmrQRvGiARALa~ 149 (259)
T COG4525 77 GVVFQNEALLPWLNVIDNVAFGLQLRGIE-KAQRREIAHQMLALVGLEGAEHKYI------WQLSGGMRQRVGIARALAV 149 (259)
T ss_pred eeEeccCccchhhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhCcccccccce------EeecchHHHHHHHHHHhhc
Confidence 99999999999999999999998876322 2246678899999999999887754 5999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEe--CCeEEEEeChh
Q 006548 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETL 333 (641)
Q Consensus 265 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~--~G~iv~~G~~~ 333 (641)
+|++|+||||+++||.-+++++.++|-++. +.|+.++++||+. +|..-+++|+++|+ .|+|+..-+++
T Consensus 150 eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i-eEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 150 EPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI-EEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred CcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999999999999999999987 5699999988876 57778999999998 58999877765
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=329.61 Aligned_cols=197 Identities=24% Similarity=0.306 Sum_probs=167.7
Q ss_pred EEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---C-----
Q 006548 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---M----- 179 (641)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~---~----- 179 (641)
++||++.++ ++.+|+|+|+.+++||+++|+||||||||||+++|+|+++|++ |+|.++|.+.. .
T Consensus 1 i~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~ 72 (206)
T TIGR03608 1 LKNISKKFG-----DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDS---GQVYLNGKETPPLNSKKASK 72 (206)
T ss_pred CcceEEEEC-----CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEccccchhhHHH
Confidence 368888874 3469999999999999999999999999999999999998875 99999998732 1
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
..+.++|++|++.+++.+|++||+.+...... .......++++++++.+|+.+..++.+ .+||||||||++|
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~lS~G~~qr~~l 145 (206)
T TIGR03608 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKK-LSKKEKREKKKEALEKVGLNLKLKQKI------YELSGGEQQRVAL 145 (206)
T ss_pred HHHhCeeEEecchhhccCCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCchhhhcCCh------hhCCHHHHHHHHH
Confidence 12469999999999999999999988654321 111124557889999999988877754 4999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (641)
||||+.+|++|||||||+|||+.++..+.+.|+++.++|.|+|+++|++. . .+.||++++|
T Consensus 146 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~-~~~~d~i~~l 206 (206)
T TIGR03608 146 ARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE-V-AKQADRVIEL 206 (206)
T ss_pred HHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HhhcCEEEeC
Confidence 99999999999999999999999999999999999877899999999874 4 4689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=373.46 Aligned_cols=216 Identities=19% Similarity=0.332 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|.+....
T Consensus 5 ~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 5 YISMAGIGKSFG-----PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTK---GTITINNINYNKLDHKL 76 (510)
T ss_pred eEEEeeeEEEcC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCc---cEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999998875 9999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhc--CCC----ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQ--LPG----FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~--~~~----~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (641)
.+.++|++|++.+++.+||+||+.++.... ... ...+..++++++++.+||.+..++.++ +|||||
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~------~LSgG~ 150 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA------NLSISH 150 (510)
T ss_pred HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh------hCCHHH
Confidence 246999999999999999999998753210 001 011234568899999999877777554 999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ .++..+||++++|++|++++.|++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecch
Confidence 9999999999999999999999999999999999999999988899999988876 578899999999999999999998
Q ss_pred hHH
Q 006548 333 LAC 335 (641)
Q Consensus 333 ~~~ 335 (641)
+++
T Consensus 230 ~~~ 232 (510)
T PRK09700 230 SDV 232 (510)
T ss_pred hhC
Confidence 765
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=360.31 Aligned_cols=216 Identities=25% Similarity=0.349 Sum_probs=185.9
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 006548 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~--- 179 (641)
+..+..+|+++.|++ ++++++|+|+++++|+.+||+|+||||||||+++|+|+.+|+. |+|.+||.+...
T Consensus 318 ~~ei~~~~l~~~y~~----g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~---G~I~vng~~l~~l~~ 390 (559)
T COG4988 318 PIEISLENLSFRYPD----GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ---GEIRVNGIDLRDLSP 390 (559)
T ss_pred CceeeecceEEecCC----CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCC---ceEEECCccccccCH
Confidence 345667799999963 3489999999999999999999999999999999999999875 999999987532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGE 252 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGe 252 (641)
.+++++||+|++.+++. |++||+.++. + ...++.+.++++..||.+..+. ++|. +..++|||||
T Consensus 391 ~~~~k~i~~v~Q~p~lf~g-TireNi~l~~----~---~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ 461 (559)
T COG4988 391 EAWRKQISWVSQNPYLFAG-TIRENILLAR----P---DASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQ 461 (559)
T ss_pred HHHHhHeeeeCCCCccccc-cHHHHhhccC----C---cCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHH
Confidence 24789999999999865 9999997741 1 1346779999999999888776 3322 2446799999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
+|||++||||+.+++++++||||++||.++.+.|++.|.+++++ +|+++++|++. ...-+|+|++|++|+++..|..
T Consensus 462 ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~--~~~~~D~I~vld~G~l~~~g~~ 538 (559)
T COG4988 462 AQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLE--DAADADRIVVLDNGRLVEQGTH 538 (559)
T ss_pred HHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChH--HHhcCCEEEEecCCceeccCCH
Confidence 99999999999999999999999999999999999999999875 88999899874 4667999999999999999999
Q ss_pred hHHHH
Q 006548 333 LACLQ 337 (641)
Q Consensus 333 ~~~~~ 337 (641)
+++.+
T Consensus 539 ~~L~~ 543 (559)
T COG4988 539 EELSE 543 (559)
T ss_pred HHHhh
Confidence 88754
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=338.61 Aligned_cols=222 Identities=21% Similarity=0.282 Sum_probs=180.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC------EeC
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG------AKS 177 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G------~~~ 177 (641)
..+.++|+++.+. ++.+|+|+|+.+.+||+++|+||||||||||+++|+|+.+|+. |+|.++| .+.
T Consensus 9 ~~i~~~~~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~---G~v~~~G~~~~~g~~~ 80 (257)
T PRK14246 9 DVFNISRLYLYIN-----DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYD---SKIKVDGKVLYFGKDI 80 (257)
T ss_pred hheeeeeEEEecC-----CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---CceeEcCEEEECCccc
Confidence 4689999999984 4579999999999999999999999999999999999998864 5555554 432
Q ss_pred CC-----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHH
Q 006548 178 EM-----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 178 ~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (641)
.. .++.++|++|++.+++.+||+||+.+...........+..++++++++.+++.+...... +..+..|||||
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~LS~G~ 158 (257)
T PRK14246 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRL--NSPASQLSGGQ 158 (257)
T ss_pred ccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhh--cCCcccCCHHH
Confidence 21 134689999999999999999999886433211111123456889999999964211111 22456999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ ..+.++||++++|++|+++..|++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~~g~~ 236 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSS 236 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999965 68999998887 478899999999999999999998
Q ss_pred hHHHH
Q 006548 333 LACLQ 337 (641)
Q Consensus 333 ~~~~~ 337 (641)
++..+
T Consensus 237 ~~~~~ 241 (257)
T PRK14246 237 NEIFT 241 (257)
T ss_pred HHHHh
Confidence 77643
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=334.09 Aligned_cols=216 Identities=18% Similarity=0.262 Sum_probs=178.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~--~~~~~~~~G~I~~~G~~~~~--- 179 (641)
.++++||++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+ ++|. +|+|.++|.+...
T Consensus 7 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 7 ILEIKNLHASVN-----ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL---EGDILFKGESILDLEP 78 (252)
T ss_pred eEEEEeEEEEeC-----CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC---CceEEECCEEcccCCh
Confidence 589999999984 24699999999999999999999999999999999998 4565 4999999987432
Q ss_pred -CC-c-eEEEEcCCCccCCCCCHHHHHHHHHHhcC-----CC-ccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCC
Q 006548 180 -PY-G-SYGFVERETTLIGSLTVREYLYYSALLQL-----PG-FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (641)
Q Consensus 180 -~~-~-~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-----~~-~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LS 249 (641)
.. + .++|++|++.+++.+|+.+++.+...... .. ...+..+++.++++.+|+. +..++.++ .+||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~LS 153 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN-----EGFS 153 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc-----cCCC
Confidence 11 2 47899999999999999999976543211 00 0001235678899999997 45555432 2599
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc-CCEEEEEeCCeEEE
Q 006548 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLF 328 (641)
Q Consensus 250 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~ 328 (641)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+... ||++++|++|++++
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999877999999989874 56665 89999999999999
Q ss_pred EeChhH
Q 006548 329 FGETLA 334 (641)
Q Consensus 329 ~G~~~~ 334 (641)
.|+++.
T Consensus 233 ~~~~~~ 238 (252)
T CHL00131 233 TGDAEL 238 (252)
T ss_pred ecChhh
Confidence 998874
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=339.00 Aligned_cols=221 Identities=18% Similarity=0.229 Sum_probs=179.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~--~~~~G~I~~~G~~~~~-- 179 (641)
..+.++||++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.++. ...+|+|.++|++...
T Consensus 19 ~~l~~~nl~~~~~-----~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 19 SVFEVEGVKVFYG-----GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred ceEEEeeEEEEeC-----CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 4689999999984 346999999999999999999999999999999999997531 0125999999986521
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
..+.++|++|+..+++. ||.||+.+....+. .....++.++++++.+++.+...... +..+..|||||||
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LSgGq~q 168 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG--YKGNLDELVEDSLRRAAIWEEVKDKL--KEKGTALSGGQQQ 168 (274)
T ss_pred chhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC--chHHHHHHHHHHHHHcccchhhHHHh--cCCcccCCHHHHH
Confidence 12469999999988874 99999987643221 11122345677888888743222111 2356799999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe---------CCe
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS---------NGN 325 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~---------~G~ 325 (641)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|+ +|+
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~~~~G~ 246 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYGKRRGK 246 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEecccccccccCce
Confidence 99999999999999999999999999999999999999975 68999988887 47889999999998 899
Q ss_pred EEEEeChhHHH
Q 006548 326 TLFFGETLACL 336 (641)
Q Consensus 326 iv~~G~~~~~~ 336 (641)
+++.|+++++.
T Consensus 247 ~~~~g~~~~~~ 257 (274)
T PRK14265 247 LVEFSPTEQMF 257 (274)
T ss_pred EEEeCCHHHHH
Confidence 99999998874
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=336.11 Aligned_cols=222 Identities=21% Similarity=0.238 Sum_probs=182.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~-- 179 (641)
..+.++++++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 7 ~~~~~~~~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 81 (261)
T PRK14263 7 IVMDCKLDKIFYG-----NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG 81 (261)
T ss_pred ceEEEEeEEEEeC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccc
Confidence 4688999998873 3569999999999999999999999999999999999987621 135999999987521
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
..+.++|++|++.++ .+|+.||+.+....... .....++++++++.++|.+..+... +..++.|||||||
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~i~~~~--~~~~~~LS~G~~q 156 (261)
T PRK14263 82 VDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRY--KGDLGDRVKHALQGAALWDEVKDKL--KVSGLSLSGGQQQ 156 (261)
T ss_pred cchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCc--hHHHHHHHHHHHHHcCCchhhhhhh--hCCcccCCHHHHH
Confidence 124699999999887 59999999887543311 1123457889999999865433222 2356799999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe--------CCeE
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS--------NGNT 326 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~--------~G~i 326 (641)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++ +++|+|+++|++ .++.++||++++|+ +|++
T Consensus 157 rv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~G~i 234 (261)
T PRK14263 157 RLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNM-QQAIRVADTTAFFSVDISQGTRTGYL 234 (261)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHHhCCEEEEEecccccccCCceE
Confidence 9999999999999999999999999999999999999996 478999988887 47889999999996 8999
Q ss_pred EEEeChhHHHH
Q 006548 327 LFFGETLACLQ 337 (641)
Q Consensus 327 v~~G~~~~~~~ 337 (641)
+..|+++++.+
T Consensus 235 ~~~g~~~~~~~ 245 (261)
T PRK14263 235 VEMGPTAQIFQ 245 (261)
T ss_pred EEeCCHHHHHh
Confidence 99999887643
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=377.26 Aligned_cols=214 Identities=23% Similarity=0.333 Sum_probs=182.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.+.+ ++++|+|+|++++|||.+||+||||||||||+++|+|++ |.+ |+|.+||.+...
T Consensus 349 ~i~~~~vsf~~~~----~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~---G~I~i~g~~i~~~~~~~ 420 (588)
T PRK11174 349 TIEAEDLEILSPD----GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ---GSLKINGIELRELDPES 420 (588)
T ss_pred eEEEEeeEEeccC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC---cEEEECCEecccCCHHH
Confidence 5999999976532 357999999999999999999999999999999999999 754 999999987542
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCC-----CCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~-----~~~LSGGerq 254 (641)
.++.++||+|++.+|. .|++||+.++. +. ..+++++++++..++.+..++++.|.+. ...|||||||
T Consensus 421 lr~~i~~v~Q~~~LF~-~TI~eNI~~g~----~~---~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQ 492 (588)
T PRK11174 421 WRKHLSWVGQNPQLPH-GTLRDNVLLGN----PD---ASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQ 492 (588)
T ss_pred HHhheEEecCCCcCCC-cCHHHHhhcCC----CC---CCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHH
Confidence 1357999999999986 59999997741 11 2456788999999998876665544332 3569999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|+|||||||||+||+.++..+.+.|+++. +++|+|+++|+++ ..+.||+|++|++|++++.|+.++
T Consensus 493 RialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~e 569 (588)
T PRK11174 493 RLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAE 569 (588)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHH
Confidence 9999999999999999999999999999999999999885 5789999999984 456799999999999999999887
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 570 L~~ 572 (588)
T PRK11174 570 LSQ 572 (588)
T ss_pred HHh
Confidence 754
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=333.07 Aligned_cols=222 Identities=20% Similarity=0.273 Sum_probs=181.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~--- 179 (641)
.++++||++.+. .+.+|+|+|+++.+||+++|+||||||||||+++|+|+.+ |....+|+|.++|.+...
T Consensus 3 ~l~~~~v~~~~~-----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 77 (250)
T PRK14266 3 RIEVENLNTYFD-----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77 (250)
T ss_pred EEEEEeEEEEeC-----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence 478999999884 3469999999999999999999999999999999999864 210125999999987532
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|++.+++. |++||+.+.............++++.++++.+++.+...... +..+..||||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~Gq~qr 154 (250)
T PRK14266 78 DVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKL--DKSALGLSGGQQQR 154 (250)
T ss_pred cHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHH--hCCcccCCHHHHHH
Confidence 13469999999988875 999999876432211111123456888999999864332222 23566999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.+.||++++|++|++++.|+++++
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999964 78999988887 478899999999999999999998876
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 233 ~ 233 (250)
T PRK14266 233 F 233 (250)
T ss_pred H
Confidence 4
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=336.17 Aligned_cols=221 Identities=21% Similarity=0.269 Sum_probs=179.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~--~~~~~G~I~~~G~~~~~--- 179 (641)
.++++||++.|. .+.+|+|+|+++++||+++|+|+||||||||+|+|+|+.++ ....+|+|.++|++...
T Consensus 10 ~l~i~~v~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 10 VLRTENLNVYYG-----SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred EEEEeeeEEEEC-----CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 589999999984 24699999999999999999999999999999999998753 10135999999986521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|++.+++ .||+||+.+...... ......++++++++.+++.+..+... +..+..||||||||
T Consensus 85 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LSgGq~qr 159 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING--YKGDMDELVERSLRQAALWDEVKDKL--KQSGLSLSGGQQQR 159 (264)
T ss_pred ChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC--cchHHHHHHHHHHHHhCchhhHHHHh--cCCcccCCHHHHHH
Confidence 1246999999998887 599999987653321 11123455777888888854222211 23566999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe---------CCeE
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS---------NGNT 326 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~---------~G~i 326 (641)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|+ +|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~~g~i 237 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGGGRYGYL 237 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccccccccCceE
Confidence 9999999999999999999999999999999999999976 58999988887 58899999999998 8999
Q ss_pred EEEeChhHHHH
Q 006548 327 LFFGETLACLQ 337 (641)
Q Consensus 327 v~~G~~~~~~~ 337 (641)
++.|+++++.+
T Consensus 238 ~~~~~~~~~~~ 248 (264)
T PRK14243 238 VEFDRTEKIFN 248 (264)
T ss_pred EEeCCHHHHHh
Confidence 99999887743
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=340.05 Aligned_cols=217 Identities=20% Similarity=0.345 Sum_probs=179.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--Cc
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--YG 182 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~ 182 (641)
.++++||++.|++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++.... .+
T Consensus 6 ~l~~~~l~~~~~~----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWRN----GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS---GKISILGQPTRQALQKN 78 (272)
T ss_pred eEEEEeEEEEecC----CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEhHHhhccc
Confidence 5899999999842 3469999999999999999999999999999999999998875 9999999875321 23
Q ss_pred eEEEEcCCCccC--CCCCHHHHHHHHHHhcC---CCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 183 SYGFVERETTLI--GSLTVREYLYYSALLQL---PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 183 ~~~yv~Q~~~l~--~~lTV~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.++|++|++.+. ...+++|++.++..... .......+++++++++.+||.+..++.+ ..||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgG~~qrv~ 152 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI------GELSGGQKKRVF 152 (272)
T ss_pred eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc------ccCCHHHHHHHH
Confidence 599999997652 23578998865321100 0001123456788999999988877755 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||+++++ +|++++.|+++++.
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 99999999999999999999999999999999999987799999988887 4788999999877 89999999887653
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=377.35 Aligned_cols=221 Identities=21% Similarity=0.232 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~------ 178 (641)
.++++||++.|...+ ....+|+||||++++||++||+||||||||||+|+|+|+++|++ |+|.++|....
T Consensus 12 ~l~v~~l~~~y~~~~-~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~---G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 12 VLAVENLNIAFMQEQ-QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAG---GLVQCDKMLLRRRSRQV 87 (623)
T ss_pred eEEEeceEEEecCCC-CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC---eEEEECCEEeccccccc
Confidence 689999999995321 23479999999999999999999999999999999999998875 99999886320
Q ss_pred -------------CCCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch---HHhhhhc
Q 006548 179 -------------MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD---YANKLIG 240 (641)
Q Consensus 179 -------------~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~ig 240 (641)
...+.+|||+|++ .+++.+||.||+.++..........+.++++.++++.+||.+ ..++
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--- 164 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSR--- 164 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhC---
Confidence 0113699999997 688899999999987654211111224567889999999963 3454
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEE
Q 006548 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRIC 319 (641)
Q Consensus 241 ~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~ 319 (641)
++.+|||||||||+||+||+.+|+||||||||+|||+.++..+.++|++++++ |+|||+++|+. ..+.++||||+
T Consensus 165 ---~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~adri~ 240 (623)
T PRK10261 165 ---YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIADRVL 240 (623)
T ss_pred ---CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEE
Confidence 45699999999999999999999999999999999999999999999999865 89999988776 57889999999
Q ss_pred EEeCCeEEEEeChhHHH
Q 006548 320 LLSNGNTLFFGETLACL 336 (641)
Q Consensus 320 vL~~G~iv~~G~~~~~~ 336 (641)
+|++|++++.|+++++.
T Consensus 241 vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 241 VMYQGEAVETGSVEQIF 257 (623)
T ss_pred EeeCCeecccCCHHHhh
Confidence 99999999999988764
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=329.13 Aligned_cols=209 Identities=26% Similarity=0.389 Sum_probs=174.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.+.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~---~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~ 75 (220)
T cd03245 2 RIEFRNVSFSYPN---QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTS---GSVLLDGTDIRQLDPAD 75 (220)
T ss_pred eEEEEEEEEEcCC---CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CeEEECCEEhHHCCHHH
Confidence 3789999998842 12469999999999999999999999999999999999998875 999999986421
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerq 254 (641)
..+.++|++|++.+++ .||.||+.+.. .. ...+.+.++++.+++.+..++.+.+. ..+..|||||||
T Consensus 76 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~----~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~q 147 (220)
T cd03245 76 LRRNIGYVPQDVTLFY-GTLRDNITLGA----PL---ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQ 147 (220)
T ss_pred HHhhEEEeCCCCcccc-chHHHHhhcCC----CC---CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHH
Confidence 1246999999998886 69999996531 11 12345678899999988887754211 134689999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ +|||+++|++. .+ ++||++++|++|++++.|
T Consensus 148 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 148 AVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999999999999999999764 89999999875 44 799999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=333.08 Aligned_cols=217 Identities=23% Similarity=0.337 Sum_probs=175.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P---- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-~---- 180 (641)
++++|+++.+.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|.+... .
T Consensus 1 l~i~~l~~~~~~~--~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 75 (238)
T cd03249 1 IEFKNVSFRYPSR--PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTS---GEILLDGVDIRDLNLRWL 75 (238)
T ss_pred CeEEEEEEecCCC--CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCC---CEEEECCEehhhcCHHHH
Confidence 3689999988431 12469999999999999999999999999999999999998875 999999986431 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqR 255 (641)
.+.++|++|++.+++ .||+||+.+.... . ..+.+.+.++..++.+..+....+ +..++.||||||||
T Consensus 76 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~----~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 147 (238)
T cd03249 76 RSQIGLVSQEPVLFD-GTIAENIRYGKPD----A---TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQR 147 (238)
T ss_pred HhhEEEECCchhhhh-hhHHHHhhccCCC----C---CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHH
Confidence 246999999998876 6999999764211 0 112344555666665554433210 23467999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++ +|+|||+++|++. ++. .||++++|++|++++.|+.+++
T Consensus 148 v~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~~~~~ 224 (238)
T cd03249 148 IAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVLQNGQVVEQGTHDEL 224 (238)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999997 7899999999874 565 8999999999999999988776
Q ss_pred HHH
Q 006548 336 LQH 338 (641)
Q Consensus 336 ~~~ 338 (641)
.+.
T Consensus 225 ~~~ 227 (238)
T cd03249 225 MAQ 227 (238)
T ss_pred hhc
Confidence 543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=368.39 Aligned_cols=218 Identities=26% Similarity=0.399 Sum_probs=182.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++||+++|+.+ +..+||+|+|+.+++|+.+||+|||||||||++++|.+++.|++ |+|++||.+.+.
T Consensus 349 g~ief~nV~FsYPsR--pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~---G~V~idG~di~~~~~~ 423 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSR--PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTS---GEVLIDGEDIRNLNLK 423 (1228)
T ss_pred cceEEEEEEecCCCC--CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---ceEEEcCccchhcchH
Confidence 469999999999754 46689999999999999999999999999999999999999976 999999987542
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (641)
.+.++|.|.|+|.+| ..|++||+.|+. + ...+++++++.+..+..++..+++.|.+ ...+||||||
T Consensus 424 ~lr~~iglV~QePvlF-~~tI~eNI~~G~----~---dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQK 495 (1228)
T KOG0055|consen 424 WLRSQIGLVSQEPVLF-ATTIRENIRYGK----P---DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQK 495 (1228)
T ss_pred HHHhhcCeeeechhhh-cccHHHHHhcCC----C---cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHH
Confidence 235799999999887 579999998741 1 1234567777777666555444433222 2335999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
||++|||||+.+|+|||||||||+||+.+...|.+.|++.. +|+|.|+++|..+ .+.. +|+|++|++|+||+.|..+
T Consensus 496 QRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tIrn-aD~I~v~~~G~IvE~G~h~ 572 (1228)
T KOG0055|consen 496 QRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-TIRN-ADKIAVMEEGKIVEQGTHD 572 (1228)
T ss_pred HHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hhhc-cCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999998876 4677777789875 6655 9999999999999999999
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
|+++
T Consensus 573 ELi~ 576 (1228)
T KOG0055|consen 573 ELIA 576 (1228)
T ss_pred HHHh
Confidence 9876
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=323.79 Aligned_cols=197 Identities=22% Similarity=0.281 Sum_probs=170.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 181 (641)
++++|+++++. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 2 LEARNLACERD-----ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDA---GEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred eEEEEEEEEEC-----CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEcccchHHhh
Confidence 67899999984 3469999999999999999999999999999999999999875 999999987532 13
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++.+||.||+.+...... . ..+++++++++.+||.+..++.+ ..||||||||++||||
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--~--~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~~qrl~la~a 143 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLHG--P--GDDEALWEALAQVGLAGFEDVPV------RQLSAGQQRRVALARL 143 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhcC--c--cHHHHHHHHHHHcCCHHHhhCCh------hhcCHHHHHHHHHHHH
Confidence 468999999999999999999987653321 1 23456889999999988777754 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (641)
|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++. ++.+..+|++++
T Consensus 144 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 144 WLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 99999999999999999999999999999999877899999999874 677777788776
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=381.23 Aligned_cols=213 Identities=25% Similarity=0.311 Sum_probs=183.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||+++|++ ..+.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 451 ~I~~~nvsf~Y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg~~i~~~~~~~ 524 (686)
T TIGR03797 451 AIEVDRVTFRYRP---DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES---GSVFYDGQDLAGLDVQA 524 (686)
T ss_pred eEEEEEEEEEcCC---CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEEcCcCCHHH
Confidence 5999999999953 23579999999999999999999999999999999999999975 999999998643
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++.++||+|++.+|+ .|++||+.++. + ..++++.++++..|+.+..++.+.|.+ ....|||||||
T Consensus 525 lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~----~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQ 595 (686)
T TIGR03797 525 VRRQLGVVLQNGRLMS-GSIFENIAGGA----P----LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQ 595 (686)
T ss_pred HHhccEEEccCCccCc-ccHHHHHhcCC----C----CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 1357999999999986 59999997641 1 235668899999999887766554332 23679999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|++||||||||+||+.+++++.+.|+++ ++|+|+++|++. ..+.||+|++|++|++++.|+.++
T Consensus 596 RialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~ 670 (686)
T TIGR03797 596 RLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDE 670 (686)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999886 579999999984 456799999999999999999888
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 671 Ll~ 673 (686)
T TIGR03797 671 LMA 673 (686)
T ss_pred HHh
Confidence 754
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=330.40 Aligned_cols=215 Identities=24% Similarity=0.341 Sum_probs=176.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.+.+ .+.+|+|+|+++++||+++|+|||||||||||++|+|+++|.+ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (229)
T cd03254 2 EIEFENVNFSYDE----KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQK---GQILIDGIDIRDISRKS 74 (229)
T ss_pred eEEEEEEEEecCC----CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCEeHHHcCHHH
Confidence 4789999998842 2359999999999999999999999999999999999999875 999999986431
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerq 254 (641)
..+.++|++|++.+++. ||+||+.+... . .....+++.++.+++.+..++...+ +..+..|||||||
T Consensus 75 ~~~~i~~~~q~~~~~~~-tv~~~~~~~~~----~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~ 146 (229)
T cd03254 75 LRSMIGVVLQDTFLFSG-TIMENIRLGRP----N---ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQ 146 (229)
T ss_pred HhhhEEEecCCchhhhh-HHHHHHhccCC----C---CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHH
Confidence 12469999999988875 99999976421 1 1223456667777776665543210 1245799999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
||+|||+|+.+|++|||||||+|||+.++..+++.|++++ +|+|||+++|++. ++. .||++++|++|++++.|+.++
T Consensus 147 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~~~~ 223 (229)
T cd03254 147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TIK-NADKILVLDDGKIIEEGTHDE 223 (229)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HHh-hCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999999999996 5899999999885 554 599999999999999988776
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
..+
T Consensus 224 ~~~ 226 (229)
T cd03254 224 LLA 226 (229)
T ss_pred HHh
Confidence 543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=320.69 Aligned_cols=187 Identities=46% Similarity=0.738 Sum_probs=163.2
Q ss_pred eEEEEeEEEEEeccc-ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC--
Q 006548 105 SVVWKDLTVTIKGKR-RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~--~~~~~~~G~I~~~G~~~~~-- 179 (641)
.++++||++.|++.+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|+. +|.. |+|.++|++...
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~---G~i~~~g~~~~~~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVS---GEVLINGRPLDKRS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCc---eEEEECCEeCchHh
Confidence 589999999995310 01256999999999999999999999999999999999999 7764 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
..+.++|++|++.+++.+|++||+.+.... ..||||||||++||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~------------------------------------~~LS~G~~qrv~la 123 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAKL------------------------------------RGLSGGERKRVSIA 123 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHHh------------------------------------ccCCHHHHHHHHHH
Confidence 235699999999999999999999653210 06999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|||+.+|+++||||||+|||+.++..+.+.|++++++|+|+|+++|++..++.++||++++|++|++++.|
T Consensus 124 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 124 LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998779999999999865788899999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=320.51 Aligned_cols=187 Identities=41% Similarity=0.668 Sum_probs=161.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC-C
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-P 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~-~ 180 (641)
..++++|+++.|++.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ ++ +|+|.++|++... .
T Consensus 2 ~~l~~~~l~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~---~G~i~~~g~~~~~~~ 77 (192)
T cd03232 2 SVLTWKNLNYTVPVKG-GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILINGRPLDKNF 77 (192)
T ss_pred cEEEEeeeEEEecCCC-CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc---ceEEEECCEehHHHh
Confidence 3589999999995311 12469999999999999999999999999999999999863 44 4999999987532 2
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
.+.++|++|++.+++.+||+||+.+.... + .||||||||++|||
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-----------------~-------------------~LSgGe~qrv~la~ 121 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSALL-----------------R-------------------GLSVEQRKRLTIGV 121 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHHH-----------------h-------------------cCCHHHhHHHHHHH
Confidence 35699999999999999999999764210 0 69999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC-CeEEEEe
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTLFFG 330 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~-G~iv~~G 330 (641)
||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.||++++|++ |++++.|
T Consensus 122 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 122 ELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999877999999999985457789999999998 9999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=365.53 Aligned_cols=216 Identities=25% Similarity=0.357 Sum_probs=182.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..++|+||+|.|+.+ +...+|+|+||+++|||++||+||||+||||+.++|-.++.|++ |+|.+||.++...
T Consensus 464 G~IeF~~VsFaYP~R--p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pts---G~IllDG~~i~~~~~~ 538 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTR--PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS---GRILLDGVPISDINHK 538 (716)
T ss_pred ceEEEEEeeeecCCC--CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---CeEEECCeehhhcCHH
Confidence 469999999999853 56789999999999999999999999999999999999999986 9999999986431
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-------hHHhhhhcCCCCCCCCCHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-------DYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~~LSGG 251 (641)
++++|+|.||+.||. -||+|||.|+.. ...+++++++.+..+-. +-.|+.+| +...+||||
T Consensus 539 ~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-------~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VG--EkG~qLSGG 608 (716)
T KOG0058|consen 539 YLRRKIGLVGQEPVLFS-GSIRENIAYGLD-------NATDEEIEAAAKMANAHEFITNFPDGYNTVVG--EKGSQLSGG 608 (716)
T ss_pred HHHHHeeeeeccceeec-ccHHHHHhcCCC-------CCCHHHHHHHHHHhChHHHHHhCccccccccC--Cccccccch
Confidence 367999999999995 599999998642 12344455555554443 34566664 344579999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||++|||||++||+||||||.||+||+.+...|.+.|.++.+ ++|||++.|+.+ ..+.+|+|+++++|++++.|+
T Consensus 609 QKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 609 QKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred HHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcCCeEEeccc
Confidence 99999999999999999999999999999999999999999875 489999888764 457899999999999999998
Q ss_pred hhHHHH
Q 006548 332 TLACLQ 337 (641)
Q Consensus 332 ~~~~~~ 337 (641)
-+|+++
T Consensus 686 h~eLl~ 691 (716)
T KOG0058|consen 686 HDELLS 691 (716)
T ss_pred HHHHhh
Confidence 877764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=367.56 Aligned_cols=217 Identities=20% Similarity=0.354 Sum_probs=182.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|+ ..+|+|.++|++....
T Consensus 2 l~i~~l~~~~~-----~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTFG-----GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEeC-----CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHH
Confidence 68999999984 346999999999999999999999999999999999998862 0249999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCC---CccchHHHHHHHHHHHcCCchHH-hhhhcCCCCCCCCCHHHHHH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYA-NKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~~~LSGGerqR 255 (641)
.+.++|++|++.+++.+||+||+.++...... ....+..++++++++.++|.+.. ++.+ .+||||||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG~~qr 149 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV------GDYGGGQQQL 149 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch------hhCCHHHHHH
Confidence 24699999999999999999999876432211 01112345688999999997654 3434 4999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|+. +++.++||+|++|++|+++..|++++.
T Consensus 150 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999999999988899999988876 578899999999999999999987653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=368.39 Aligned_cols=222 Identities=23% Similarity=0.297 Sum_probs=184.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEe---CC-
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN-GAK---SE- 178 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~-G~~---~~- 178 (641)
..++++||++.|.+.+...+.+|+|+|+.+++||+++|+||||||||||+|+|+|+++|++ |+|.++ |.+ ..
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~~g~~~~~~~~ 354 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS---GEVNVRVGDEWVDMTK 354 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEEecCCccccccc
Confidence 3689999999985211123469999999999999999999999999999999999998875 999996 532 11
Q ss_pred C-------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-----HHhhhhcCCCCCC
Q 006548 179 M-------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-----YANKLIGGHCYMK 246 (641)
Q Consensus 179 ~-------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~ig~~~~~~ 246 (641)
. .++.++|++|++.+++.+||.||+.+...+..+ ....+++++++++.+||.+ ..++. +.
T Consensus 355 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~~------~~ 426 (520)
T TIGR03269 355 PGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELP--DELARMKAVITLKMVGFDEEKAEEILDKY------PD 426 (520)
T ss_pred cchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCC--HHHHHHHHHHHHHhCCCCCccchhhhhCC------hh
Confidence 0 124599999999899999999999875432211 1123456889999999964 45554 45
Q ss_pred CCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |.|||+++|+. .++.++||++++|++|+
T Consensus 427 ~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 505 (520)
T TIGR03269 427 ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALMRDGK 505 (520)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999865 89999988887 57889999999999999
Q ss_pred EEEEeChhHHHH
Q 006548 326 TLFFGETLACLQ 337 (641)
Q Consensus 326 iv~~G~~~~~~~ 337 (641)
++..|+++++.+
T Consensus 506 i~~~g~~~~~~~ 517 (520)
T TIGR03269 506 IVKIGDPEEIVE 517 (520)
T ss_pred EEEECCHHHHHh
Confidence 999999887654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=367.54 Aligned_cols=212 Identities=17% Similarity=0.298 Sum_probs=181.0
Q ss_pred EeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC------Cc
Q 006548 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP------YG 182 (641)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~------~~ 182 (641)
+|+++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++.... ++
T Consensus 2 ~nl~~~~~-----~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 2 SNISKSFP-----GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDS---GSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CceEEEeC-----CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCc---eEEEECCEECCCCCHHHHHhC
Confidence 67888884 3469999999999999999999999999999999999998875 9999999875321 24
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCC--CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLP--GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~--~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
.++|++|+..+++.+||+||+.++...... ....+..++++++++.+++.+..++.+ .+|||||||||+|||
T Consensus 74 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV------ATLSVSQMQMIEIAK 147 (491)
T ss_pred CEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch------hhCCHHHHHHHHHHH
Confidence 699999999899999999999875321101 011123456889999999987777654 499999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||++++|++|+++..|++++.
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999999999999999999999988899999988876 578899999999999999999987664
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=374.10 Aligned_cols=217 Identities=22% Similarity=0.290 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|++ ..+.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 341 ~i~~~~vsf~y~~---~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g~~i~~~~~~~ 414 (582)
T PRK11176 341 DIEFRNVTFTYPG---KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDE---GEILLDGHDLRDYTLAS 414 (582)
T ss_pred eEEEEEEEEecCC---CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCC---ceEEECCEEhhhcCHHH
Confidence 5999999999953 23579999999999999999999999999999999999999975 999999987542
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++.++||+|++.+|+ .|++||+.++. +. ...+++++++++.+|+.+..+++..|.+ ....|||||||
T Consensus 415 ~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~--~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQ 487 (582)
T PRK11176 415 LRNQVALVSQNVHLFN-DTIANNIAYAR----TE--QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487 (582)
T ss_pred HHhhceEEccCceeec-chHHHHHhcCC----CC--CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHH
Confidence 1357999999999986 59999997631 11 1245678899999998877665544332 23679999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|++. ..+.||+|++|++|++++.|+.++
T Consensus 488 Ri~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~ 564 (582)
T PRK11176 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAE 564 (582)
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999985 4689999999983 567799999999999999999887
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 565 l~~ 567 (582)
T PRK11176 565 LLA 567 (582)
T ss_pred HHh
Confidence 754
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=333.93 Aligned_cols=223 Identities=20% Similarity=0.233 Sum_probs=179.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSE--- 178 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~--- 178 (641)
..++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|.. ..+|+|.++|.+..
T Consensus 15 ~~l~~~~l~~~~~-----~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 15 QKSEVNKLNFYYG-----GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred ceEEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 3589999999984 3469999999999999999999999999999999999987521 13599999987532
Q ss_pred ------CCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHH
Q 006548 179 ------MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 179 ------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (641)
...+.++|++|++.+++. ||+||+.+.............+++++++++.+++.+...... +..+..|||||
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~ 166 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRL--GDLAFNLSGGQ 166 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHH--hCCcccCCHHH
Confidence 113468999999998875 999999876432211111112456788888888753211111 22456999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++ +++.++||++++|++|+++..|+.
T Consensus 167 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~-~~~~~~~d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 167 QQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNM-QQAARVSDYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999975 68999988876 578899999999999999999998
Q ss_pred hHHH
Q 006548 333 LACL 336 (641)
Q Consensus 333 ~~~~ 336 (641)
++..
T Consensus 245 ~~~~ 248 (265)
T PRK14252 245 DTIF 248 (265)
T ss_pred HHHH
Confidence 7754
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=324.43 Aligned_cols=201 Identities=20% Similarity=0.281 Sum_probs=174.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CC
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PY 181 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~--~~ 181 (641)
..+.++|+++.+. .+.+++++|+++++||+++|+|+||||||||+++|+|+++|+. |+|.++|++... ..
T Consensus 10 ~~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 10 PLLAAHALAFSRN-----EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVES---GQIQIDGKTATRGDRS 81 (214)
T ss_pred ceEEEeeEEEecC-----CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC---eeEEECCEEccchhhh
Confidence 3689999999884 3469999999999999999999999999999999999999875 999999987532 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++.+|+.||+.+....+. . ...+.++++++.++|.+..++.+ ..||||||||++|||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~--~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~lara 151 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHG--R--RAKQMPGSALAIVGLAGYEDTLV------RQLSAGQKKRLALARL 151 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcC--C--cHHHHHHHHHHHcCChhhccCCh------hhCCHHHHHHHHHHHH
Confidence 458999999999998999999987653321 1 23456788999999988777755 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
++.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++ .++.++||++++++.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 152 WLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 9999999999999999999999999999999988899999988887 588999999999864
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=327.98 Aligned_cols=207 Identities=19% Similarity=0.312 Sum_probs=172.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 7 ~i~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 7 LLQLQNVGYLAG-----DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDISTLKPEI 78 (225)
T ss_pred eEEEeccEEeeC-----CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CeEEECCEEcCcCCHHH
Confidence 589999999884 3469999999999999999999999999999999999998875 999999986532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
..+.++|++|++.+++ .||+||+.+....... ....++++++++.+++. ...++. +..|||||||||+|
T Consensus 79 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~------~~~LS~G~~qrv~l 148 (225)
T PRK10247 79 YRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QPDPAIFLDDLERFALPDTILTKN------IAELSGGEKQRISL 148 (225)
T ss_pred HHhccEEEeccccccc-ccHHHHHHhHHhhcCC---ChHHHHHHHHHHHcCCChHHhcCC------cccCCHHHHHHHHH
Confidence 1246899999988887 5999999875433211 12345678999999996 456654 45999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEe-CCeEEEEeC
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS-NGNTLFFGE 331 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~-~G~iv~~G~ 331 (641)
||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. ++ ..||++++|+ ++..+.+|.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 149 IRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHhhhh
Confidence 99999999999999999999999999999999999864 899999888874 55 4699999995 555555553
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=365.92 Aligned_cols=213 Identities=22% Similarity=0.346 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++....
T Consensus 4 ~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 4 YLSFDGIGKTFP-----GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA---GSILIDGQEMRFASTTA 75 (501)
T ss_pred eEEEeeeEEEEC-----CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999998875 9999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC--ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPG--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
++.++|++|++.+++.+||.||+.++....... ...+.+++++++++.+||.+..++.+ .+|||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qrv 149 (501)
T PRK11288 76 ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL------KYLSIGQRQMV 149 (501)
T ss_pred HHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch------hhCCHHHHHHH
Confidence 246999999999999999999998753211111 11123457889999999986666644 49999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|+++..++.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999999999988899999988887 478899999999999999887654
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=332.94 Aligned_cols=215 Identities=27% Similarity=0.361 Sum_probs=171.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P---- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-~---- 180 (641)
++++|+++.++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 74 (234)
T cd03251 1 VEFKNVTFRYPGD---GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDS---GRILIDGHDVRDYTLASL 74 (234)
T ss_pred CEEEEEEEEeCCC---CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCC---CEEEECCEEhhhCCHHHH
Confidence 3689999988531 2369999999999999999999999999999999999999875 999999986432 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhc-----CCCCCCCCCHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG-----GHCYMKGLPCGERRR 255 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig-----~~~~~~~LSGGerqR 255 (641)
.+.++|++|++.+++ .||+||+.+... .. ....+++.++..++.+..+.... -+..+..||||||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~enl~~~~~----~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qr 146 (234)
T cd03251 75 RRQIGLVSQDVFLFN-DTVAENIAYGRP----GA---TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQR 146 (234)
T ss_pred HhhEEEeCCCCeecc-ccHHHHhhccCC----CC---CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHH
Confidence 246999999998886 699999976421 10 11223333444444433322210 022456999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++. ++.. ||++++|++|+++..|+++++
T Consensus 147 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~v~~l~~G~i~~~~~~~~~ 223 (234)
T cd03251 147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIEN-ADRIVVLEDGKIVERGTHEEL 223 (234)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHhh-CCEEEEecCCeEeeeCCHHHH
Confidence 9999999999999999999999999999999999999974 889999999885 5655 999999999999999988776
Q ss_pred HH
Q 006548 336 LQ 337 (641)
Q Consensus 336 ~~ 337 (641)
.+
T Consensus 224 ~~ 225 (234)
T cd03251 224 LA 225 (234)
T ss_pred HH
Confidence 54
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=367.63 Aligned_cols=222 Identities=23% Similarity=0.292 Sum_probs=184.8
Q ss_pred ceEEEEeEEEEEeccc------ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 006548 104 ASVVWKDLTVTIKGKR------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~------~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~ 177 (641)
..++++||++.|.... ...+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ . +|+|+++|++.
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i 349 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPL 349 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEc
Confidence 3589999999985211 013579999999999999999999999999999999999985 4 39999999864
Q ss_pred CC--------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCC-CccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCC
Q 006548 178 EM--------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYM 245 (641)
Q Consensus 178 ~~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~ 245 (641)
.. .++.++|++|+. .+++.+||+||+.++...+.. ....+.+++++++++.+||. +..++.+
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------ 423 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYP------ 423 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCC------
Confidence 21 124589999996 488889999999886543211 11112346788999999997 4666644
Q ss_pred CCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 006548 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNG 324 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (641)
..|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|||+++|+. .++.++||++++|++|
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQG 502 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEECC
Confidence 599999999999999999999999999999999999999999999999865 89999988876 5788999999999999
Q ss_pred eEEEEeChhHHH
Q 006548 325 NTLFFGETLACL 336 (641)
Q Consensus 325 ~iv~~G~~~~~~ 336 (641)
+++..|+++++.
T Consensus 503 ~i~~~~~~~~~~ 514 (529)
T PRK15134 503 EVVEQGDCERVF 514 (529)
T ss_pred EEEEEcCHHHHh
Confidence 999999987764
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=372.10 Aligned_cols=214 Identities=21% Similarity=0.288 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|++ ++++|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 340 ~i~~~~v~f~y~~----~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~idg~~i~~~~~~~ 412 (592)
T PRK10790 340 RIDIDNVSFAYRD----DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE---GEIRLDGRPLSSLSHSV 412 (592)
T ss_pred eEEEEEEEEEeCC----CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---ceEEECCEEhhhCCHHH
Confidence 5899999999952 2469999999999999999999999999999999999999975 999999987542
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCC-----CCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~-----~~~LSGGerq 254 (641)
.++.++||+|++.+|+. |++||+.++. + ..+++++++++.+|+.+..++++.|.+. ...|||||||
T Consensus 413 l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~----~----~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQ 483 (592)
T PRK10790 413 LRQGVAMVQQDPVVLAD-TFLANVTLGR----D----ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQ 483 (592)
T ss_pred HHhheEEEccCCccccc-hHHHHHHhCC----C----CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 23679999999999975 9999998741 1 2456689999999999887776544332 3569999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+.+|+||+||||||+||+.+++.+.+.|+++.+ ++|+|+++|++. ....||+|++|++|+++..|+.++
T Consensus 484 RialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~ 560 (592)
T PRK10790 484 LLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQ 560 (592)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999864 689999999984 456799999999999999999988
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 561 L~~ 563 (592)
T PRK10790 561 LLA 563 (592)
T ss_pred HHh
Confidence 754
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=329.27 Aligned_cols=202 Identities=24% Similarity=0.263 Sum_probs=169.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 185 (641)
+.++++++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|++....
T Consensus 23 l~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~----- 89 (224)
T cd03220 23 LGILGRKGEVG-----EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDS---GTVTVRGRVSSLL----- 89 (224)
T ss_pred hhhhhhhhhcC-----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEchhh-----
Confidence 67788887773 4579999999999999999999999999999999999998875 9999999864211
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC
Q 006548 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (641)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (641)
.+...+.+.+||+||+.+....... .....+++++++++.+++.+..++.++ +||||||||++|||+|+.+
T Consensus 90 --~~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qrv~laral~~~ 160 (224)
T cd03220 90 --GLGGGFNPELTGRENIYLNGRLLGL-SRKEIDEKIDEIIEFSELGDFIDLPVK------TYSSGMKARLAFAIATALE 160 (224)
T ss_pred --cccccCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhhhhCChh------hCCHHHHHHHHHHHHHhcC
Confidence 1123455779999999876543211 112234567889999999888877554 9999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 266 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|
T Consensus 161 p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999987789999988887 4788899999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=331.32 Aligned_cols=202 Identities=25% Similarity=0.404 Sum_probs=174.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.++++||++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|. ..+
T Consensus 4 ~l~~~~l~~~~~-----~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~~~------~~i 69 (251)
T PRK09544 4 LVSLENVSVSFG-----QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDE---GVIKRNGK------LRI 69 (251)
T ss_pred EEEEeceEEEEC-----CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCc------cCE
Confidence 589999999984 3469999999999999999999999999999999999998875 99999872 359
Q ss_pred EEEcCCCccCCC--CCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 185 GFVERETTLIGS--LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 185 ~yv~Q~~~l~~~--lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
+|++|++.+++. .|+.+++.+. +. ...+++.++++.+||.+..++.+ ..|||||||||+|||||
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-----~~---~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGq~qrv~laral 135 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-----PG---TKKEDILPALKRVQAGHLIDAPM------QKLSGGETQRVLLARAL 135 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-----cc---ccHHHHHHHHHHcCChHHHhCCh------hhCCHHHHHHHHHHHHH
Confidence 999999887765 3777776431 11 12345788999999998887755 49999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.+.||++++|++ +++..|+++++.
T Consensus 136 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 136 LNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLNH-HICCSGTPEVVS 208 (251)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEECC-ceEeeCCHHHHh
Confidence 9999999999999999999999999999999865 89999988887 578899999999964 799999887754
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=365.84 Aligned_cols=224 Identities=22% Similarity=0.260 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~--~~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.|.... ..+.+|+|+|+++++||++||+||||||||||+|+|+|+++|. ...+|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~~~~-~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 5 LLAIENLSVAFRQQQ-TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred eEEEeceEEEecCCC-CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 589999999995211 1257999999999999999999999999999999999999862 0125999999987421
Q ss_pred ------CCceEEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch---HHhhhhcCCCCCCCC
Q 006548 180 ------PYGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD---YANKLIGGHCYMKGL 248 (641)
Q Consensus 180 ------~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~ig~~~~~~~L 248 (641)
..+.+||++|++. +++.+|++|++.+...........+..++++++++.+||.+ ..++. +.+|
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~------~~~L 157 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDY------PHQL 157 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhC------Cccc
Confidence 1136999999974 67778999998765432111111124567899999999975 34554 4599
Q ss_pred CHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 006548 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (641)
Q Consensus 249 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (641)
||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||+++|++ +.+.++||||++|++|+++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 89999988887 4788899999999999999
Q ss_pred EEeChhHHH
Q 006548 328 FFGETLACL 336 (641)
Q Consensus 328 ~~G~~~~~~ 336 (641)
+.|+++++.
T Consensus 237 ~~g~~~~~~ 245 (529)
T PRK15134 237 EQNRAATLF 245 (529)
T ss_pred EeCCHHHHh
Confidence 999988764
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=322.32 Aligned_cols=194 Identities=24% Similarity=0.320 Sum_probs=169.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 181 (641)
++++||++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|++ |+|.++|.+... ..
T Consensus 1 l~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (201)
T cd03231 1 LEADELTCERD-----GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLA---GRVLLNGGPLDFQRDSIA 72 (201)
T ss_pred CEEEEEEEEeC-----CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccccHHhh
Confidence 36899999884 3469999999999999999999999999999999999999875 999999987432 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++.+||+||+.+... . ...++++++++.+++.+..++.+ ..||||||||++||||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~e~l~~~~~----~---~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~lara 139 (201)
T cd03231 73 RGLLYLGHAPGIKTTLSVLENLRFWHA----D---HSDEQVEEALARVGLNGFEDRPV------AQLSAGQQRRVALARL 139 (201)
T ss_pred hheEEeccccccCCCcCHHHHHHhhcc----c---ccHHHHHHHHHHcCChhhhcCch------hhCCHHHHHHHHHHHH
Confidence 469999999999889999999977421 1 13456889999999988777654 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (641)
|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++. +....||+++++
T Consensus 140 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 140 LLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 99999999999999999999999999999999877999999999885 677899999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=328.09 Aligned_cols=213 Identities=24% Similarity=0.340 Sum_probs=172.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 180 (641)
++++|+++.+++ .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|.+ |+|.++|.+... .
T Consensus 1 l~~~~l~~~~~~----~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYDP----GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSS---GSILIDGQDIREVTLDSL 73 (236)
T ss_pred CEEEEEEEEeCC----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CEEEECCEEhhhCCHHHH
Confidence 368999998842 2469999999999999999999999999999999999998875 999999986532 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqR 255 (641)
++.++|++|+..+++ .||+||+.+... . .....+.+.++..++.+..+....+ +..++.||||||||
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~----~---~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~r 145 (236)
T cd03253 74 RRAIGVVPQDTVLFN-DTIGYNIRYGRP----D---ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQR 145 (236)
T ss_pred HhhEEEECCCChhhc-chHHHHHhhcCC----C---CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHH
Confidence 246999999998885 699999976421 1 1112345556666665554433210 22457999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
|+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |.|||+++|++. .+. .||++++|++|+++..|+.++.
T Consensus 146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~-~~d~~~~l~~g~i~~~~~~~~~ 222 (236)
T cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TIV-NADKIIVLKDGRIVERGTHEEL 222 (236)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHH-hCCEEEEEECCEEEeeCCHHHH
Confidence 9999999999999999999999999999999999999987 899999998875 554 4999999999999999887665
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 223 ~ 223 (236)
T cd03253 223 L 223 (236)
T ss_pred h
Confidence 4
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=331.81 Aligned_cols=199 Identities=24% Similarity=0.335 Sum_probs=170.4
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----CceEEEEcCCCccCCCCCH
Q 006548 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P----YGSYGFVERETTLIGSLTV 199 (641)
Q Consensus 125 iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-~----~~~~~yv~Q~~~l~~~lTV 199 (641)
+|+|+|+++++||+++|+||||||||||+++|+|+.++ +|+|.++|++... . .+.++|++|++.+++.+|+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 79999999999999999999999999999999999864 3999999987532 1 2358999999888888999
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHh-------CCcEEEEe
Q 006548 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM-------RPHVLFID 272 (641)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~-------~P~iLlLD 272 (641)
+||+.+..... .......++++++++.+||.+..++.+ +.||||||||++|||||+. +|++||||
T Consensus 87 ~~nl~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 87 FQYLTLHQPDK--TRTEAVASALNEVAEALGLDDKLGRSV------NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHHhcCccC--CCcHHHHHHHHHHHHHcCCHhHhcCCc------ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 99998753211 111123457889999999987777654 4999999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 273 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 273 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||+|||+.++..+.+.|++++++|.|||+++|+. .++.++||++++|++|++++.|+.+++.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999987799999988887 4788999999999999999999877653
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=329.48 Aligned_cols=215 Identities=23% Similarity=0.245 Sum_probs=181.4
Q ss_pred ceEEEEeEEEEEeccc---------------ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee
Q 006548 104 ASVVWKDLTVTIKGKR---------------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~---------------~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G 168 (641)
..+.++||+++|...+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~---G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTV---G 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---e
Confidence 4688999998886421 134569999999999999999999999999999999999999875 9
Q ss_pred EEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCC
Q 006548 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (641)
Q Consensus 169 ~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~L 248 (641)
+|.++|. ++++.|+..+.+.+|+.||+.+....... ...+..+.++++++.+++.+..++.+ ..|
T Consensus 80 ~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~L 144 (264)
T PRK13546 80 KVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCMGF-KRKEIKAMTPKIIEFSELGEFIYQPV------KKY 144 (264)
T ss_pred EEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhcCCc------ccC
Confidence 9999985 35667777777889999999875433211 11123445678889999988777654 499
Q ss_pred CHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 249 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|+|+++|+. .++.++||++++|++|+++.
T Consensus 145 S~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 145 SSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHHcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999987799999988886 47889999999999999999
Q ss_pred EeChhHHHH
Q 006548 329 FGETLACLQ 337 (641)
Q Consensus 329 ~G~~~~~~~ 337 (641)
.|+.+++.+
T Consensus 224 ~g~~~~~~~ 232 (264)
T PRK13546 224 YGELDDVLP 232 (264)
T ss_pred eCCHHHHHH
Confidence 999887654
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=380.36 Aligned_cols=214 Identities=25% Similarity=0.327 Sum_probs=183.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|++++|++ ..+.+|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 477 ~I~~~~vsf~y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg~~i~~~~~~~ 550 (710)
T TIGR03796 477 YVELRNITFGYSP---LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS---GEILFDGIPREEIPREV 550 (710)
T ss_pred eEEEEEEEEecCC---CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEeHHHCCHHH
Confidence 6999999999963 23579999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++.++||+|++.+|. .|++||+.++ .+. ..++++.++++..++.+..++.+.|.+ ...+|||||||
T Consensus 551 lr~~i~~v~Q~~~lf~-gTi~eNi~l~----~~~---~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQ 622 (710)
T TIGR03796 551 LANSVAMVDQDIFLFE-GTVRDNLTLW----DPT---IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQ 622 (710)
T ss_pred HHhheeEEecCChhhh-ccHHHHhhCC----CCC---CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHH
Confidence 2467999999999985 5999999653 111 245668889999999887766654332 33679999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|++||||||||+||+.++..+.+.|++ .++|+|+++|+++ ....||+|++|++|++++.|+.++
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999986 4799999999984 346699999999999999999988
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 698 Ll~ 700 (710)
T TIGR03796 698 LWA 700 (710)
T ss_pred HHH
Confidence 764
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=398.17 Aligned_cols=223 Identities=22% Similarity=0.304 Sum_probs=196.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++||++.|++ ..+.+|+|+|+.+++||++||+||||||||||+|+|+|+++|++ |+|.++|++...
T Consensus 1936 ~~L~v~nLsK~Y~~---~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pts---G~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1936 DILRLNELTKVYSG---TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTS---GDATVAGKSILTNISD 2009 (2272)
T ss_pred ceEEEEEEEEEECC---CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCc---cEEEECCEECcchHHH
Confidence 46899999999852 13579999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
.++.+||++|++.+++.+||+|++.+.+.++.. ...+.+++++++++.+||.+.+|+.++ +|||||||||+||
T Consensus 2010 ~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~-~~~~~~~~v~~lLe~lgL~~~~dk~~~------~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2010 VHQNMGYCPQFDAIDDLLTGREHLYLYARLRGV-PAEEIEKVANWSIQSLGLSLYADRLAG------TYSGGNKRKLSTA 2082 (2272)
T ss_pred HhhhEEEEeccccCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCHHHhcCChh------hCCHHHHHHHHHH
Confidence 135699999999999999999999887665421 111235668899999999998888665 9999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHh
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (641)
+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||+++|+. +++..+||||++|++|+++..|+++++...|
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 999999999999999999999999999999999988899999988876 6899999999999999999999999988776
Q ss_pred h
Q 006548 340 S 340 (641)
Q Consensus 340 ~ 340 (641)
.
T Consensus 2162 g 2162 (2272)
T TIGR01257 2162 G 2162 (2272)
T ss_pred C
Confidence 5
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=334.68 Aligned_cols=214 Identities=20% Similarity=0.290 Sum_probs=179.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|... ...+|+|+|+.+++||+++|+|+||||||||+++|+|+++ .+ |+|+++|.+...
T Consensus 2 ~i~~~nls~~~~~~---~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~---G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 2 QMTVKDLTAKYTEG---GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TE---GDIQIDGVSWNSVPLQK 74 (275)
T ss_pred eEEEEEEEEEeCCC---CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CC---cEEEECCEEhhhCCHHH
Confidence 47899999999531 3469999999999999999999999999999999999987 43 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++.++|++|++.+++ .||+||+.... . ...+++.++++.+||.+..++.+++.. ....|||||||
T Consensus 75 lr~~i~~v~q~~~lf~-~tv~~nl~~~~-----~---~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~q 145 (275)
T cd03289 75 WRKAFGVIPQKVFIFS-GTFRKNLDPYG-----K---WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQ 145 (275)
T ss_pred HhhhEEEECCCcccch-hhHHHHhhhcc-----C---CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 1346999999999987 49999995311 0 123467888999999988887664211 12359999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+.+|+||||||||++||+.+...+.+.|+++. +++|||+++|++ +.+. .||||++|++|++++.|++++
T Consensus 146 rl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~~~~ 222 (275)
T cd03289 146 LMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDSIQK 222 (275)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCCHHH
Confidence 9999999999999999999999999999999999999875 489999988887 4565 499999999999999999998
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
++.
T Consensus 223 l~~ 225 (275)
T cd03289 223 LLN 225 (275)
T ss_pred Hhh
Confidence 765
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=348.49 Aligned_cols=216 Identities=25% Similarity=0.340 Sum_probs=186.6
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 006548 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~--- 179 (641)
+..++|+||++.|. +++++|+++||+|++||-+||+|+|||||||++|+|.+... . +|+|++||+++..
T Consensus 349 ~~~I~F~dV~f~y~----~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~ 420 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG----PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSL 420 (591)
T ss_pred CCcEEEEeeEEEeC----CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhCh
Confidence 34699999999996 34569999999999999999999999999999999999987 4 3999999998532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGE 252 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGe 252 (641)
.++.+||||||..||. -||.+|+.|+. .....++|-++.+..|+.+...++++|. +....|||||
T Consensus 421 ~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-------~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGe 492 (591)
T KOG0057|consen 421 ESLRQSIGVVPQDSVLFN-DTILYNIKYGN-------PSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGE 492 (591)
T ss_pred HHhhhheeEeCCcccccc-hhHHHHhhcCC-------CCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccch
Confidence 2457999999999995 49999998852 1234567888999999988877775542 3456699999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
||||+||||++.+|+|+++|||||+||..+..++++.+.+ ...|+|+|++.|... ...-||+|++|++|++...|+-
T Consensus 493 kQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~--ll~~~DkI~~l~nG~v~e~gth 569 (591)
T KOG0057|consen 493 KQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLD--LLKDFDKIIVLDNGTVKEYGTH 569 (591)
T ss_pred HHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecch--hHhcCCEEEEEECCeeEEeccH
Confidence 9999999999999999999999999999999999999999 445899999999874 5678999999999999999999
Q ss_pred hHHHH
Q 006548 333 LACLQ 337 (641)
Q Consensus 333 ~~~~~ 337 (641)
++++.
T Consensus 570 ~ell~ 574 (591)
T KOG0057|consen 570 SELLA 574 (591)
T ss_pred HHHhh
Confidence 88875
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=327.29 Aligned_cols=216 Identities=21% Similarity=0.271 Sum_probs=174.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~--~~~~~~~G~I~~~G~~~~~---- 179 (641)
++++||++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+. +|++ |+|.++|.+...
T Consensus 2 i~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~---G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 2 LSIKDLHVSVE-----DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG---GTVEFKGKDLLELSPE 73 (248)
T ss_pred eEEEEEEEEeC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCc---eEEEECCCccccCCHH
Confidence 68999999984 346999999999999999999999999999999999995 4654 999999976421
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHH-hc-CCC-c-cc--hHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL-LQ-LPG-F-FC--QRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPC 250 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~-~~-~~~-~-~~--~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSG 250 (641)
....++|++|++.+++.+|+.+++.+... .. ... . .. ...+.++++++.+++. +..++.+. +.|||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~LS~ 148 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN-----VGFSG 148 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC-----CCCCH
Confidence 11359999999988888887777643211 11 000 0 00 1245678889999995 44444321 37999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc-CCEEEEEeCCeEEEE
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFF 329 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~~ 329 (641)
||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||+++|++. .+... +|++++|++|++++.
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999877899999999874 56666 899999999999999
Q ss_pred eChhHH
Q 006548 330 GETLAC 335 (641)
Q Consensus 330 G~~~~~ 335 (641)
|+++.+
T Consensus 228 g~~~~~ 233 (248)
T PRK09580 228 GDFTLV 233 (248)
T ss_pred CCHHHH
Confidence 988754
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=336.59 Aligned_cols=222 Identities=23% Similarity=0.305 Sum_probs=179.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~--~~~~G~I~~~G~~~~~--- 179 (641)
.+.++||++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|++++. ...+|+|.++|.+...
T Consensus 45 ~l~i~nl~~~~~-----~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 45 KLSVEDLDVYYG-----DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred eEEEEEEEEEeC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 589999999984 346999999999999999999999999999999999998521 0125999999986531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-----------Cc-cchHHHHHHHHHHHcCCchHHhhhhcCCC
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-----------GF-FCQRKNVVEDAIHAMSLSDYANKLIGGHC 243 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-----------~~-~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 243 (641)
.++.++|++|+..+++ .||+||+.+....... .. ....++.++++++.+++.+..+... +.
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~ 196 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL--DD 196 (305)
T ss_pred cHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh--cC
Confidence 1246999999998887 5999999886532100 00 0112456888999999854332222 23
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEE-EEEe
Q 006548 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI-CLLS 322 (641)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v-~vL~ 322 (641)
.+++|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ .|+|+++|++ ..+.++||++ ++|+
T Consensus 197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~~-~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNM-QQAARISDQTAVFLT 274 (305)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcCH-HHHHHhcCEEEEEec
Confidence 56799999999999999999999999999999999999999999999999864 8999988887 4788999997 5789
Q ss_pred CCeEEEEeChhHHH
Q 006548 323 NGNTLFFGETLACL 336 (641)
Q Consensus 323 ~G~iv~~G~~~~~~ 336 (641)
+|++++.|+++++.
T Consensus 275 ~G~i~~~g~~~~~~ 288 (305)
T PRK14264 275 GGELVEYDDTDKIF 288 (305)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999987654
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=364.35 Aligned_cols=218 Identities=22% Similarity=0.243 Sum_probs=182.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECC---------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNG--------- 174 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~--~~~~~~~G~I~~~G--------- 174 (641)
++++|+++.|. ++.+|+|+|+.+++||+++|+||||||||||+|+|+|++ +|++ |+|.++|
T Consensus 1 l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~---G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKFD-----GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTS---GRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEEC-----CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCc---eEEEEecccccccccc
Confidence 46899999983 346999999999999999999999999999999999996 5654 9999972
Q ss_pred --------------EeC--------C-------CCCceEEEEcCC-CccCCCCCHHHHHHHHHHhcCCCccchHHHHHHH
Q 006548 175 --------------AKS--------E-------MPYGSYGFVERE-TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED 224 (641)
Q Consensus 175 --------------~~~--------~-------~~~~~~~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~ 224 (641)
.+. . ..++.++|++|+ +.+++.+||+||+.++..... ....+.++++.+
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~ 151 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIG-YEGKEAVGRAVD 151 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 111 0 012458999997 678888999999988654321 111123567899
Q ss_pred HHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEE
Q 006548 225 AIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFT 303 (641)
Q Consensus 225 ~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t 303 (641)
+++.+||.+..++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++
T Consensus 152 ~l~~~gl~~~~~~~~------~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviiv 225 (520)
T TIGR03269 152 LIEMVQLSHRITHIA------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT 225 (520)
T ss_pred HHHHcCChhhhhcCc------ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 999999988877754 49999999999999999999999999999999999999999999999975 48999998
Q ss_pred EeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHh
Q 006548 304 INQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (641)
Q Consensus 304 ~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (641)
+|++ ..+.++||++++|++|++++.|++++..+.+
T Consensus 226 tHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 226 SHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred eCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 8887 4788899999999999999999988876543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=318.06 Aligned_cols=193 Identities=25% Similarity=0.310 Sum_probs=164.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 181 (641)
++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (198)
T TIGR01189 1 LAARNLACSRG-----ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDS---GEVRWNGTALAEQRDEPH 72 (198)
T ss_pred CEEEEEEEEEC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEEcccchHHhh
Confidence 36889999884 3569999999999999999999999999999999999998875 999999986432 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++.+||.||+.+...... ..+++++++++.+++.+..++.+ ..|||||||||+||||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~la~a 141 (198)
T TIGR01189 73 RNILYLGHLPGLKPELSALENLHFWAAIHG-----GAQRTIEDALAAVGLTGFEDLPA------AQLSAGQQRRLALARL 141 (198)
T ss_pred hheEEeccCcccccCCcHHHHHHHHHHHcC-----CcHHHHHHHHHHcCCHHHhcCCh------hhcCHHHHHHHHHHHH
Confidence 468999999988888999999987543321 12346788999999998887755 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEE
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL 320 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~v 320 (641)
|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++.. -.|++++.
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 142 WLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999999999999999999999998789999999998853 23677664
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=351.50 Aligned_cols=214 Identities=22% Similarity=0.386 Sum_probs=186.9
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..++++|++++|+ ..++|+|||+.+++||++||+|.||||||||+|+|+|.++|++ |+|.++|++....
T Consensus 7 ~ll~~~~i~K~Fg-----gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~---G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 7 PLLELRGISKSFG-----GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS---GEILIDGKPVAFSSPR 78 (500)
T ss_pred ceeeeecceEEcC-----CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCC---ceEEECCEEccCCCHH
Confidence 3688999999994 5689999999999999999999999999999999999999986 9999999975421
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-C--ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLP-G--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~--~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
...|+.|+|+..++|++||.||+.++.....+ . +..+..++..++|+.+|+..-.+++++ +||+||||
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~------~LsiaqrQ 152 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG------DLSIAQRQ 152 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh------hCCHHHHH
Confidence 24699999999999999999999876443321 1 112245678899999999533666655 99999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
.|+|||||..+++|||||||||+|+......+.+.+++|+++|.++|+++|.. +|++++||||.||+||+++..++.
T Consensus 153 ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 153 MVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999999999999999999999999999999999999988865 699999999999999999998883
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=323.53 Aligned_cols=206 Identities=19% Similarity=0.243 Sum_probs=169.3
Q ss_pred EEEEeEEEEEeccccc--ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC--CE--eCC-
Q 006548 106 VVWKDLTVTIKGKRRY--SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN--GA--KSE- 178 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~--G~--~~~- 178 (641)
++++||++.|..++.. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++ |. +..
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDS---GRILVRHEGAWVDLAQ 78 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEEecCCCccchhh
Confidence 6889999999532111 2469999999999999999999999999999999999998875 999998 42 221
Q ss_pred C--------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchH-HhhhhcCCCCCCCCC
Q 006548 179 M--------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLP 249 (641)
Q Consensus 179 ~--------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LS 249 (641)
. ..+.++|++|++.+++.+||.||+.+...... .......+++.++++.+|+.+. .++. +.+||
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~LS 151 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERG-VPREAARARARELLARLNIPERLWHLP------PATFS 151 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchhhhhCC------cccCC
Confidence 0 12468999999999999999999987643221 1111234567889999999753 4543 45999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 250 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++ ..+.++||+++.+.
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 9999999999999999999999999999999999999999999987799999988885 56778999998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=312.04 Aligned_cols=169 Identities=29% Similarity=0.434 Sum_probs=152.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 181 (641)
++++|+++.++ .+.+|+|+|+++.+||+++|+||||||||||+++|+|+.+|.+ |+|.++|++... .+
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (173)
T cd03230 1 IEVRNLSKRYG-----KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS---GEIKVLGKDIKKEPEEVK 72 (173)
T ss_pred CEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEcccchHhhh
Confidence 36899999884 2369999999999999999999999999999999999998865 999999986532 13
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++.+|+.||+. ||||||||++||||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~~~-------------------------------------------LS~G~~qrv~lara 109 (173)
T cd03230 73 RRIGYLPEEPSLYENLTVRENLK-------------------------------------------LSGGMKQRLALAQA 109 (173)
T ss_pred ccEEEEecCCccccCCcHHHHhh-------------------------------------------cCHHHHHHHHHHHH
Confidence 56999999999998899999872 99999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++ .++.++||++++|++|++
T Consensus 110 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 110 LLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999999999987789999988887 478889999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=364.16 Aligned_cols=220 Identities=19% Similarity=0.277 Sum_probs=182.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVNGAKSEMP-- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~-~~~~~~G~I~~~G~~~~~~-- 180 (641)
..++++||++.|... +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |++ |+|.++|++....
T Consensus 258 ~~l~~~~l~~~~~~~--~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~---G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 258 VILEVRNLTAWDPVN--PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWE---GEIFIDGKPVKIRNP 332 (506)
T ss_pred ceEEEecCccccccc--cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC---cEEEECCEECCCCCH
Confidence 358999999887321 13469999999999999999999999999999999999987 454 9999999875321
Q ss_pred ----CceEEEEcCCC---ccCCCCCHHHHHHHHHHhcCCC----ccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCC
Q 006548 181 ----YGSYGFVERET---TLIGSLTVREYLYYSALLQLPG----FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGL 248 (641)
Q Consensus 181 ----~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~~----~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~L 248 (641)
.+.++|++|++ .+++.+||.||+.+........ .....+++++++++.+++. +..++.+ ..|
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~L 406 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI------ARL 406 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc------ccC
Confidence 23589999985 4788899999998753211110 1112345688999999996 5667655 499
Q ss_pred CHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 249 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++|+|||+++|+. +++.++||++++|++|+++.
T Consensus 407 SgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~ 485 (506)
T PRK13549 407 SGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL-PEVLGLSDRVLVMHEGKLKG 485 (506)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999988899999988887 58889999999999999999
Q ss_pred EeChhHH
Q 006548 329 FGETLAC 335 (641)
Q Consensus 329 ~G~~~~~ 335 (641)
.|+++++
T Consensus 486 ~~~~~~~ 492 (506)
T PRK13549 486 DLINHNL 492 (506)
T ss_pred EeccccC
Confidence 9987653
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=314.65 Aligned_cols=217 Identities=24% Similarity=0.381 Sum_probs=191.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
++++||+++| +.+.+|+++|..+++|.+++|+|||||||||||.+++.+++.++ |+|+++|.+....
T Consensus 2 I~i~nv~K~y-----~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~---G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 2 ITIENVSKSY-----GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS---GEITIDGLELTSTPSKEL 73 (252)
T ss_pred eeehhhhHhh-----CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccC---ceEEEeeeecccCChHHH
Confidence 6789999988 45689999999999999999999999999999999999999875 9999999876432
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
.+.++.+-|+..+...+||+|-+.|+..-...+ ...+.+..++++++.++|.++.|+... +||||||||.-||
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd------~LSGGQrQRAfIA 147 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLD------ELSGGQRQRAFIA 147 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHH------hcccchhhhhhhh
Confidence 245788899999999999999998873211111 122466789999999999999999765 9999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
+.|+++.+.++||||.++||-..+..+|+.|++++++ |+||+++.|+.. .+..++|+|+-|++|+++..|+++++++
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 9999999999999999999999999999999999966 999999999875 7889999999999999999999999863
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=299.84 Aligned_cols=214 Identities=26% Similarity=0.322 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.+.++|+++.| +..++|.||++..+.||.+.++||||||||||++.|.=+.-|.+ |+..+.|...+.
T Consensus 2 sirv~~in~~y-----g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~s---g~l~ia~~~fd~s~~~~ 73 (242)
T COG4161 2 SIQLNGINCFY-----GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRS---GTLNIAGNHFDFSKTPS 73 (242)
T ss_pred ceEEccccccc-----ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCC---CeEEecccccccccCcc
Confidence 47899999988 35579999999999999999999999999999999998887765 999998754211
Q ss_pred ------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHH
Q 006548 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253 (641)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGer 253 (641)
.++.+|+|+|+..+.|++||.|||..+...-+.....+.+.+..++|+.+.|.+++|+ +|-.|||||+
T Consensus 74 ~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr------~plhlsggqq 147 (242)
T COG4161 74 DKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADR------YPLHLSGGQQ 147 (242)
T ss_pred HHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccccccc------Cceecccchh
Confidence 1346899999999999999999997653221211222355678899999999999988 4569999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
|||+|||||+.+|++|++||||++|||.-..++++++++|+..|.|-++++|.- +...+.+.+|+.|++|+||+.|+.+
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecchh
Confidence 999999999999999999999999999999999999999999999998888876 4678899999999999999999864
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=318.68 Aligned_cols=197 Identities=26% Similarity=0.331 Sum_probs=168.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCc
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYG 182 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~--~~~ 182 (641)
.++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++++ |+|.++|.+... .++
T Consensus 2 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 73 (207)
T PRK13539 2 MLEGEDLACVRG-----GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAA---GTIKLDGGDIDDPDVAE 73 (207)
T ss_pred EEEEEeEEEEEC-----CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEeCcchhhHh
Confidence 478999999984 3469999999999999999999999999999999999998875 999999986432 234
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++|++.+++.+||+||+.+..... . ...+.++++++.+||.+..++.+ +.||||||||++|||+|
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~--~---~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~la~al 142 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFL--G---GEELDIAAALEAVGLAPLAHLPF------GYLSAGQKRRVALARLL 142 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhc--C---CcHHHHHHHHHHcCCHHHHcCCh------hhcCHHHHHHHHHHHHH
Confidence 6899999988888999999998754332 1 12345889999999987776644 49999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|+.. ++.. |+++.+..
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 143 VSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeecC
Confidence 9999999999999999999999999999999878999999999874 5654 88887743
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=366.44 Aligned_cols=216 Identities=25% Similarity=0.368 Sum_probs=185.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++|+++.|++. .+.+|+|+|++++|||.+||+||||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 337 ~~i~~~~v~f~y~~~---~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~---G~I~i~g~~i~~~~~~ 410 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ---PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQ---GEILLNGQPIADYSEA 410 (574)
T ss_pred CeEEEEEEEEECCCC---CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEhhhCCHH
Confidence 369999999999532 2469999999999999999999999999999999999999975 999999987542
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (641)
.++.++||+|++.+|+ .|++||+.++. + ...++.+.++++.+++.+..++ +.|.+ ....||||||
T Consensus 411 ~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~---~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqr 481 (574)
T PRK11160 411 ALRQAISVVSQRVHLFS-ATLRDNLLLAA----P---NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQ 481 (574)
T ss_pred HHHhheeEEcccchhhc-ccHHHHhhcCC----C---ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHH
Confidence 1356999999999986 59999997642 1 1245678999999999988766 44333 3467999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++ .+ ..||+|++|++|++++.|+.+
T Consensus 482 qRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~-~~-~~~d~i~~l~~G~i~~~g~~~ 558 (574)
T PRK11160 482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT-GL-EQFDRICVMDNGQIIEQGTHQ 558 (574)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh-HH-HhCCEEEEEeCCeEEEeCCHH
Confidence 99999999999999999999999999999999999999986 4789999999985 44 569999999999999999988
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
++.+
T Consensus 559 ~l~~ 562 (574)
T PRK11160 559 ELLA 562 (574)
T ss_pred HHHh
Confidence 7654
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=376.23 Aligned_cols=215 Identities=23% Similarity=0.340 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|++. .++.+|+|+|++++|||.+||+||||||||||+|+|+|+++|++ |+|.+||++...
T Consensus 478 ~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~idg~~i~~~~~~~ 552 (711)
T TIGR00958 478 LIEFQDVSFSYPNR--PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG---GQVLLDGVPLVQYDHHY 552 (711)
T ss_pred eEEEEEEEEECCCC--CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CEEEECCEEHHhcCHHH
Confidence 59999999999632 23579999999999999999999999999999999999999975 999999988532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++.++||+|++.+|. .|++|||.++. +. ..++++.++++..++.+..++...|.+ ....|||||||
T Consensus 553 lr~~i~~v~Q~~~lF~-gTIreNI~~g~----~~---~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQ 624 (711)
T TIGR00958 553 LHRQVALVGQEPVLFS-GSVRENIAYGL----TD---TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQ 624 (711)
T ss_pred HHhhceEEecCccccc-cCHHHHHhcCC----CC---CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHH
Confidence 1357999999999985 69999997642 11 235678899999999887766554332 23579999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|+|||||||||+||+.++..+.+ .. ..+++|+|+++|++. ..+.||+|++|++|++++.|+.++
T Consensus 625 RlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~e 699 (711)
T TIGR00958 625 RIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQ 699 (711)
T ss_pred HHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHH
Confidence 9999999999999999999999999999999988 22 235789999999984 456799999999999999999988
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 700 L~~ 702 (711)
T TIGR00958 700 LME 702 (711)
T ss_pred HHh
Confidence 764
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=348.94 Aligned_cols=216 Identities=26% Similarity=0.355 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||+|+|++. ..++|+|+|+++++||.+||+|+||||||||+++|+|.++|++ |+|.+||.+....
T Consensus 336 ~l~~~~vsF~y~~~---~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~---G~i~~~g~~~~~l~~~~ 409 (573)
T COG4987 336 ALELRNVSFTYPGQ---QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ---GSITLNGVEIASLDEQA 409 (573)
T ss_pred eeeeccceeecCCC---ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCC---CeeeECCcChhhCChhh
Confidence 68999999999753 3479999999999999999999999999999999999999986 9999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHHHH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerq 254 (641)
++.+++++|..++|. -|+++||..+. | ...++.+.++++.+||++.....+.| ++..+.|||||||
T Consensus 410 ~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~----~---~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r 481 (573)
T COG4987 410 LRETISVLTQRVHLFS-GTLRDNLRLAN----P---DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481 (573)
T ss_pred HHHHHhhhccchHHHH-HHHHHHHhhcC----C---CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH
Confidence 346899999999985 59999997641 2 13567799999999999877665321 2345789999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||+|++|.++++|||||.|||+.+..++++.|.+-++ |+|+|++||+... .+.||||++|++|+++++|...+
T Consensus 482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~G~~~~ 558 (573)
T COG4987 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEGTHAE 558 (573)
T ss_pred HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeecCCHHh
Confidence 99999999999999999999999999999999999998764 8999999999853 57799999999999999999988
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+..
T Consensus 559 Ll~ 561 (573)
T COG4987 559 LLA 561 (573)
T ss_pred hhc
Confidence 764
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=374.97 Aligned_cols=217 Identities=24% Similarity=0.391 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|++++|++ ..+++|+|+|++++|||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 463 ~I~~~~vsf~Y~~---~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg~~l~~~~~~~ 536 (694)
T TIGR03375 463 EIEFRNVSFAYPG---QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE---GSVLLDGVDIRQIDPAD 536 (694)
T ss_pred eEEEEEEEEEeCC---CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEhhhCCHHH
Confidence 5999999999953 23569999999999999999999999999999999999999975 999999987542
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++.++||+|++.+|. .|++||+.++. +. ..++++.++++..++.+..++.+.|.+ ....|||||||
T Consensus 537 lr~~i~~v~Q~~~lf~-~TI~eNi~~~~----~~---~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQ 608 (694)
T TIGR03375 537 LRRNIGYVPQDPRLFY-GTLRDNIALGA----PY---ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ 608 (694)
T ss_pred HHhccEEECCChhhhh-hhHHHHHhCCC----CC---CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 1357999999999986 59999997631 11 245678899999999887766554322 34679999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+.+|++||||||||+||+.++..+.+.|+++.+ ++|+|+++|+++ ..+.||+|++|++|++++.|+.++
T Consensus 609 RlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~e 685 (694)
T TIGR03375 609 AVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQ 685 (694)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHH
Confidence 99999999999999999999999999999999999999864 789999999984 457899999999999999999988
Q ss_pred HHHH
Q 006548 335 CLQH 338 (641)
Q Consensus 335 ~~~~ 338 (641)
+++.
T Consensus 686 Ll~~ 689 (694)
T TIGR03375 686 VLEA 689 (694)
T ss_pred HHHH
Confidence 7654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=367.59 Aligned_cols=216 Identities=28% Similarity=0.413 Sum_probs=183.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..++++|+++.|++ ++++|+|+|++++|||.+||+||||||||||+++|+|+++|++ |+|.+||.++...
T Consensus 327 ~~I~f~~vsf~y~~----~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~---G~I~idg~dI~~i~~~ 399 (567)
T COG1132 327 GSIEFENVSFSYPG----KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS---GEILIDGIDIRDISLD 399 (567)
T ss_pred CeEEEEEEEEEcCC----CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CeEEECCEehhhcCHH
Confidence 35999999999952 4689999999999999999999999999999999999999975 9999999886432
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGer 253 (641)
++.++||+|++.+|. .||+||+.++. +. ..++++.++++..++.+...+.+.|. +....||||||
T Consensus 400 ~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~----~~---at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 400 SLRKRIGIVSQDPLLFS-GTIRENIALGR----PD---ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred HHHHhccEEcccceeec-ccHHHHHhcCC----CC---CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 367999999999997 79999998752 11 23466778888877766554443222 23456999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
||++||||++++|+||+||||||+||+.+...+.+.++++. +++|+++++|+++ .+.+ ||+|++|++|++++.|+.+
T Consensus 472 QrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti~~-aD~IiVl~~G~i~e~G~h~ 548 (567)
T COG1132 472 QRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TIKN-ADRIIVLDNGRIVERGTHE 548 (567)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HHHh-CCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999887 5678888899984 4555 9999999999999999999
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
++..
T Consensus 549 eLl~ 552 (567)
T COG1132 549 ELLA 552 (567)
T ss_pred HHHH
Confidence 8875
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=316.86 Aligned_cols=187 Identities=24% Similarity=0.322 Sum_probs=159.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCCC---
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~--~~~~~~~G~I~~~G~~~~~~--- 180 (641)
++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|+. +|+. |+|.++|++....
T Consensus 1 l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~---G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVG-----GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTE---GEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEeC-----CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCc---cEEEECCEECCcCCHH
Confidence 46899999884 246999999999999999999999999999999999994 5654 9999999875321
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
...++|++|++.+++..|+++++ ++ ....||||||||++
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l--------------------------------~~------~~~~LS~G~~qrv~ 114 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFL--------------------------------RY------VNEGFSGGEKKRNE 114 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHH--------------------------------hh------ccccCCHHHHHHHH
Confidence 23499999999888888887765 01 11389999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHh-cCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG-LFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~-~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++. .+.+ +||++++|++|++++.|+. ++.
T Consensus 115 laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~-~~~ 192 (200)
T cd03217 115 ILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDK-ELA 192 (200)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccH-HHH
Confidence 999999999999999999999999999999999999877899999999875 6666 7999999999999999944 455
Q ss_pred HHhh
Q 006548 337 QHFS 340 (641)
Q Consensus 337 ~~f~ 340 (641)
+.+.
T Consensus 193 ~~~~ 196 (200)
T cd03217 193 LEIE 196 (200)
T ss_pred hhhc
Confidence 4443
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=322.39 Aligned_cols=209 Identities=22% Similarity=0.346 Sum_probs=173.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 75 (221)
T cd03244 2 DIEFKNVSLRYRP---NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS---GSILIDGVDISKIGLHD 75 (221)
T ss_pred cEEEEEEEEecCC---CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---CEEEECCEEhHhCCHHH
Confidence 3789999999853 12469999999999999999999999999999999999998875 999999987431
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerq 254 (641)
..+.++|++|++.+++ .||+||+.+.. . ...+++.++++.+++.+..++...+ +..+..|||||||
T Consensus 76 ~~~~i~~~~q~~~l~~-~tv~enl~~~~------~--~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~q 146 (221)
T cd03244 76 LRSRISIIPQDPVLFS-GTIRSNLDPFG------E--YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQ 146 (221)
T ss_pred HhhhEEEECCCCcccc-chHHHHhCcCC------C--CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHH
Confidence 1356999999998775 59999995421 1 1234567788888887766542111 2356799999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||+++|++. ++.. ||++++|++|++++.|+
T Consensus 147 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 147 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TIID-SDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HHhh-CCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999864 689999888874 5654 99999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=325.10 Aligned_cols=193 Identities=26% Similarity=0.387 Sum_probs=170.2
Q ss_pred ceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC---------CCCCceEEEEcCCCccCCCCC
Q 006548 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS---------EMPYGSYGFVERETTLIGSLT 198 (641)
Q Consensus 128 ~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~---------~~~~~~~~yv~Q~~~l~~~lT 198 (641)
++++..+.-.++||-|+||||||||+|+|+|+.+|+. |.|.+||... ...++++|||+||..|||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPde---G~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDE---GRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccc---cEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 3455555547999999999999999999999999986 9999999742 123468999999999999999
Q ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCC
Q 006548 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278 (641)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgL 278 (641)
|+.||.|+.+.. .....+++.+.+|+.++.++.+ ..|||||||||+|+|||++.|++|+||||.+.|
T Consensus 93 VrgNL~YG~~~~-------~~~~fd~iv~lLGI~hLL~R~P------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 93 VRGNLRYGMWKS-------MRAQFDQLVALLGIEHLLDRYP------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred Eecchhhhhccc-------chHhHHHHHHHhCcHHHHhhCC------CccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 999999975322 3445789999999999999855 599999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 279 DSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 279 D~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|-..+.+++-.|.+|+++ +..|+.++|.. +|+.+++|+|++|++|++...|+.+++..
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 999999999999999976 88899987776 69999999999999999999999998864
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=375.45 Aligned_cols=215 Identities=21% Similarity=0.285 Sum_probs=183.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|+. .+++|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|++||.+...
T Consensus 473 ~I~~~~vsf~y~~----~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~---G~I~idg~~i~~~~~~~ 545 (708)
T TIGR01193 473 DIVINDVSYSYGY----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS---GEILLNGFSLKDIDRHT 545 (708)
T ss_pred cEEEEEEEEEcCC----CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCC---cEEEECCEEHHHcCHHH
Confidence 5899999999952 3579999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++.++||+|++.+|+ .|++||+.++.. + ...++++.++++..++.+..++.+.|.+ ...+|||||||
T Consensus 546 lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~---~---~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQ 618 (708)
T TIGR01193 546 LRQFINYLPQEPYIFS-GSILENLLLGAK---E---NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQ 618 (708)
T ss_pred HHHheEEEecCceehh-HHHHHHHhccCC---C---CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHH
Confidence 2357999999999986 499999976421 1 1235668889999999877665543322 34679999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|++||||||||+||+.++..+.+.|+++ +|+|+|+++|+++ ..+.||+|++|++|++++.|+.++
T Consensus 619 RialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~ 694 (708)
T TIGR01193 619 RIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDE 694 (708)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999985 4789999999984 457899999999999999999888
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 695 L~~ 697 (708)
T TIGR01193 695 LLD 697 (708)
T ss_pred HHh
Confidence 754
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=365.31 Aligned_cols=215 Identities=23% Similarity=0.338 Sum_probs=182.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|+++.|++ .+.+|+|+|++++|||.++|+|+||||||||+|+|+|+++|++ |+|.+||.+....
T Consensus 334 ~I~~~~vsf~y~~----~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~---G~I~i~g~~i~~~~~~~ 406 (588)
T PRK13657 334 AVEFDDVSFSYDN----SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS---GRILIDGTDIRTVTRAS 406 (588)
T ss_pred eEEEEEEEEEeCC----CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCEEhhhCCHHH
Confidence 5999999999953 2469999999999999999999999999999999999999975 9999999875431
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
++.++||+|++.+|+ .|++||+.++. +. ..++++.++++.+++.+..+++..|.+ ....|||||||
T Consensus 407 ~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~---~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~Q 478 (588)
T PRK13657 407 LRRNIAVVFQDAGLFN-RSIEDNIRVGR----PD---ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQ 478 (588)
T ss_pred HHhheEEEecCccccc-ccHHHHHhcCC----CC---CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHH
Confidence 357999999999985 59999997641 11 235568888999998876655443322 23569999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+.+|++|+||||||+||+.++..+.+.|+++. +++|+|+++|++. ..+.||+|++|++|+++..|+.++
T Consensus 479 RialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~ 555 (588)
T PRK13657 479 RLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDE 555 (588)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999875 4789999999984 457899999999999999999877
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
..+
T Consensus 556 l~~ 558 (588)
T PRK13657 556 LVA 558 (588)
T ss_pred HHH
Confidence 653
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=359.25 Aligned_cols=208 Identities=22% Similarity=0.242 Sum_probs=178.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P--- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-~--- 180 (641)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+... .
T Consensus 3 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~---G~i~~~~~~~~~~~~~~ 74 (490)
T PRK10938 3 SLQISQGTFRLS-----DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLS---GERQSQFSHITRLSFEQ 74 (490)
T ss_pred eEEEEeEEEEcC-----CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---ceEEECCcccccCCHHH
Confidence 489999999984 2459999999999999999999999999999999999999875 999999865421 1
Q ss_pred -CceEEEEcCCCcc--C------CCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHH
Q 006548 181 -YGSYGFVERETTL--I------GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 181 -~~~~~yv~Q~~~l--~------~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG 251 (641)
.+.++|++|++.+ + ..+||+|++.+. ...+++++++++.+||.+..++.++ +||||
T Consensus 75 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG 139 (490)
T PRK10938 75 LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE---------VKDPARCEQLAQQFGITALLDRRFK------YLSTG 139 (490)
T ss_pred HHHHhceeccCcchhhcccchhhccccHHHhcccc---------hhHHHHHHHHHHHcCCHhhhhCCcc------cCCHH
Confidence 2348999998643 1 147888887431 1234568899999999888877554 99999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
|||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ ..+.++||++++|++|+++..|+
T Consensus 140 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~ 218 (490)
T PRK10938 140 ETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF-DEIPDFVQFAGVLADCTLAETGE 218 (490)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999988899999988886 57889999999999999999999
Q ss_pred hhHHH
Q 006548 332 TLACL 336 (641)
Q Consensus 332 ~~~~~ 336 (641)
++++.
T Consensus 219 ~~~~~ 223 (490)
T PRK10938 219 REEIL 223 (490)
T ss_pred HHHHh
Confidence 87754
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=361.51 Aligned_cols=217 Identities=25% Similarity=0.365 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|++ ..+.+|+|+|+++++||.++|+||||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 316 ~i~~~~v~~~y~~---~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 316 HLSVENVTIVPPG---GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTS---GSVRLDGADLKQWDRET 389 (544)
T ss_pred eEEEEEEEEEcCC---CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEehhhCCHHH
Confidence 5999999999953 23579999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerq 254 (641)
.++.++||+|++.+++. |++||+.+.. +. ..++++.++++..++.+..++.+.|. +....|||||||
T Consensus 390 ~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~~---~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~q 461 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPG-TVAENIARFG----EN---ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQ 461 (544)
T ss_pred HhhheEEecCCcccccc-cHHHHHhccC----CC---CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHH
Confidence 13579999999999875 9999996421 11 13445677788888776655543321 235689999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|++|||||||+|||+.++..+.+.|+++..+|+|+|+++|++. ..+.||+|++|++|++++.|+.++
T Consensus 462 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~ 539 (544)
T TIGR01842 462 RIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDE 539 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHH
Confidence 999999999999999999999999999999999999999767899999999984 356799999999999999999877
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 540 l~~ 542 (544)
T TIGR01842 540 VLA 542 (544)
T ss_pred Hhh
Confidence 643
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=322.60 Aligned_cols=195 Identities=30% Similarity=0.438 Sum_probs=163.7
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccC--CCCCHHHHHHHHHH
Q 006548 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI--GSLTVREYLYYSAL 208 (641)
Q Consensus 131 ~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~--~~lTV~E~l~~~~~ 208 (641)
+++++||+++|+|+||||||||+++|+|+.+|++ |+|.++|++.....+.++|++|++.++ ..+|+.||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAK---GTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4578999999999999999999999999998875 999999986533345699999998764 34799999977532
Q ss_pred hc---CCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHH
Q 006548 209 LQ---LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285 (641)
Q Consensus 209 ~~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~ 285 (641)
.. ........+++++++++.+++.+..++.+ .+|||||||||+|||+|+.+|++|||||||+|||+.++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPV------GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCCh------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 11 00011123456889999999988777654 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 286 i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
+.+.|++++++|.|+|+++|++. ++.++||+++++ +|++++.|++++..
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 99999999877999999988874 788999999999 89999999987754
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=345.99 Aligned_cols=214 Identities=21% Similarity=0.252 Sum_probs=179.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..+.++||++.+.++ ..+.+|+|+|+.+++|++++|+|||||||||||++|+|+++|++ |+|.++|.+.
T Consensus 20 ~mL~lknL~~~~~~~--~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~s---GeI~I~G~~~------ 88 (549)
T PRK13545 20 PFDKLKDLFFRSKDG--EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNK---GTVDIKGSAA------ 88 (549)
T ss_pred ceeEEEEEEEecCCC--ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCc---eEEEECCEee------
Confidence 368899999887532 22469999999999999999999999999999999999999875 9999999742
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~ 263 (641)
++.+...+.+.+||+||+.+...... ....+..++++++++.++|.+..++.+ +.||||||||++|||||+
T Consensus 89 --~i~~~~~l~~~lTV~EnL~l~~~~~~-~~~~e~~e~i~elLe~lgL~~~ld~~~------~~LSGGQrQRVaLArAL~ 159 (549)
T PRK13545 89 --LIAISSGLNGQLTGIENIELKGLMMG-LTKEKIKEIIPEIIEFADIGKFIYQPV------KTYSSGMKSRLGFAISVH 159 (549)
T ss_pred --eEEeccccCCCCcHHHHHHhhhhhcC-CCHHHHHHHHHHHHHHcCChhHhhCCc------ccCCHHHHHHHHHHHHHH
Confidence 12223456677899999987543221 111123456778999999988887755 499999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 006548 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (641)
Q Consensus 264 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (641)
.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++...
T Consensus 160 ~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 160 INPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 99999999999999999999999999999987899999988887 478899999999999999999999887653
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=310.70 Aligned_cols=170 Identities=26% Similarity=0.402 Sum_probs=152.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|+++.+ +|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 4 ~l~~~~l~~~~---------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 4 VLEVRGLSVKG---------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPAS---GEITLDGKPVTRRSPRD 71 (182)
T ss_pred EEEEeccEEEe---------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCccCHHH
Confidence 58899998865 8999999999999999999999999999999999999875 9999999875321
Q ss_pred --CceEEEEcCCC---ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 181 --YGSYGFVERET---TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
++.++|++|+. .+++.+|++||+.+... ||||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------------LS~G~~qr 112 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSL---------------------------------------LSGGNQQK 112 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHHhh---------------------------------------cCHHHHHH
Confidence 24699999984 57888999999965310 99999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ +++.++||++++|++|++
T Consensus 113 l~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 113 VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999999999999987789999988886 578899999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=361.28 Aligned_cols=212 Identities=18% Similarity=0.272 Sum_probs=178.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..++++|+++.+ +.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++....
T Consensus 264 ~~l~~~~l~~~~-------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~---G~I~~~g~~~~~~~~~ 333 (510)
T PRK09700 264 TVFEVRNVTSRD-------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAG---GEIRLNGKDISPRSPL 333 (510)
T ss_pred cEEEEeCccccC-------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CeEEECCEECCCCCHH
Confidence 368999998753 138999999999999999999999999999999999998875 9999999865321
Q ss_pred ---CceEEEEcCC---CccCCCCCHHHHHHHHHHhc---C----CC-ccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCC
Q 006548 181 ---YGSYGFVERE---TTLIGSLTVREYLYYSALLQ---L----PG-FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYM 245 (641)
Q Consensus 181 ---~~~~~yv~Q~---~~l~~~lTV~E~l~~~~~~~---~----~~-~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~ 245 (641)
++.++|++|+ ..+++.+||.||+.+....+ . .. .....+++++++++.++|. +..++.+
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------ 407 (510)
T PRK09700 334 DAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI------ 407 (510)
T ss_pred HHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc------
Confidence 2468999998 46888999999997653211 0 00 0111234678999999996 6677655
Q ss_pred CCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
..|||||||||+|||+|+.+|++|||||||+|||+.++..++++|++++++|.|||+++|++ .++.++||++++|++|+
T Consensus 408 ~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 486 (510)
T PRK09700 408 TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL-PEIITVCDRIAVFCEGR 486 (510)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCE
Confidence 49999999999999999999999999999999999999999999999988899999988887 57889999999999999
Q ss_pred EEEEeCh
Q 006548 326 TLFFGET 332 (641)
Q Consensus 326 iv~~G~~ 332 (641)
++..++.
T Consensus 487 i~~~~~~ 493 (510)
T PRK09700 487 LTQILTN 493 (510)
T ss_pred EEEEecC
Confidence 9988865
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=310.24 Aligned_cols=170 Identities=31% Similarity=0.471 Sum_probs=151.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++++ |+|.++|.+...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (178)
T cd03229 1 LELKNVSKRYG-----QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDS---GSILIDGEDLTDLEDELP 72 (178)
T ss_pred CEEEEEEEEEC-----CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccchhHH
Confidence 36899999884 2469999999999999999999999999999999999998865 999999986432
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
..+.++|++|++.+++.+|++||+.+. ||||||||++|
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~-----------------------------------------lS~G~~qr~~l 111 (178)
T cd03229 73 PLRRRIGMVFQDFALFPHLTVLENIALG-----------------------------------------LSGGQQQRVAL 111 (178)
T ss_pred HHhhcEEEEecCCccCCCCCHHHheeec-----------------------------------------CCHHHHHHHHH
Confidence 125699999999998889999987431 99999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.++||++++|++|+
T Consensus 112 a~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 112 ARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999877 89999988887 47888999999999885
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=313.45 Aligned_cols=192 Identities=22% Similarity=0.300 Sum_probs=164.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----C
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----Y 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----~ 181 (641)
+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|+++|++.... .
T Consensus 2 l~~~~l~~~~~-----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 2 LDVIELDFDYH-----DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEK---GEILFERQSIKKDLCTYQ 73 (200)
T ss_pred EEEEEEEEEeC-----CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eeEEECCCccccCHHHHH
Confidence 68999999984 3469999999999999999999999999999999999999875 9999999865321 2
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|+..+++.+||+||+.+..... .....++++++.+++.+..++.++ .||||||||++|||+
T Consensus 74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~~rv~lara 141 (200)
T PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHFS------PGAVGITELCRLFSLEHLIDYPCG------LLSSGQKRQVALLRL 141 (200)
T ss_pred hheEEeccccccCcCCCHHHHHHHHHhcC------cchHHHHHHHHHcCCchhhhCChh------hcCHHHHHHHHHHHH
Confidence 46999999998888999999998764211 123468899999999877776544 899999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEE
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (641)
|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++. ....+|...
T Consensus 142 l~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 142 WMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 99999999999999999999999999999999877999999999874 335577543
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=362.53 Aligned_cols=217 Identities=24% Similarity=0.336 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||+++|++. .+.+|+|+|+++++||.++|+|+||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 330 ~i~~~~v~f~y~~~---~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~---G~I~i~g~~i~~~~~~~ 403 (571)
T TIGR02203 330 DVEFRNVTFRYPGR---DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDS---GQILLDGHDLADYTLAS 403 (571)
T ss_pred eEEEEEEEEEcCCC---CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CeEEECCEeHHhcCHHH
Confidence 59999999999532 3469999999999999999999999999999999999999976 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++.++|++|++.+|. .|++|||.++. +. ...+++++++++.+|+.+..++++.|.+ ....|||||||
T Consensus 404 ~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~--~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQ 476 (571)
T TIGR02203 404 LRRQVALVSQDVVLFN-DTIANNIAYGR----TE--QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQ 476 (571)
T ss_pred HHhhceEEccCccccc-ccHHHHHhcCC----CC--CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 1356999999999885 59999997641 11 1245678899999999887766543322 23569999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++||||++.+|+||+||||||+||..+++.+++.|+++. +++|+|+++|++ ...+.||+|++|++|+++..|+.++
T Consensus 477 RiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~ 553 (571)
T TIGR02203 477 RLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNE 553 (571)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 9999999999999999999999999999999999999885 468999999998 4568899999999999999999887
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
..+
T Consensus 554 l~~ 556 (571)
T TIGR02203 554 LLA 556 (571)
T ss_pred HHH
Confidence 653
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=314.31 Aligned_cols=198 Identities=26% Similarity=0.349 Sum_probs=160.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 185 (641)
++++||++.+.+++...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++| .++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~---G~i~~~g--------~i~ 69 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS---GSVSVPG--------SIA 69 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCC---CeEEEcC--------EEE
Confidence 46899999985321001369999999999999999999999999999999999998875 9999998 599
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHHHHHHHHHH
Q 006548 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqRv~IA~ 260 (641)
|++|++.++ ..|++||+.+... . ..+...+.++.+++.+..+....+ +..+..||||||||++|||
T Consensus 70 ~~~q~~~l~-~~t~~enl~~~~~------~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~lar 140 (204)
T cd03250 70 YVSQEPWIQ-NGTIRENILFGKP------F--DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLAR 140 (204)
T ss_pred EEecCchhc-cCcHHHHhccCCC------c--CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHH
Confidence 999999888 5699999976321 1 122355666777776555443211 2346789999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
+|+.+|++++|||||+|||+.++..+.+ +++++.++|.|||+++|++. .+.. ||++++|++|+
T Consensus 141 al~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 141 AVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 9999999999999999999999999998 56777666899999999974 5666 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=322.88 Aligned_cols=207 Identities=23% Similarity=0.296 Sum_probs=167.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++|+++.|+++ ..+.+|+|+|+.+++||+++|+||||||||||+++|+|+++|++ |+|.++|++...
T Consensus 10 ~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 10 GIVKFQNVTFAYPTR--PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG---GQVLLDGKPISQYEHK 84 (226)
T ss_pred ceEEEEEEEEEeCCC--CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---cEEEECCCchHHcCHH
Confidence 368999999999532 12469999999999999999999999999999999999998875 999999976421
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCcc-ch--HHHHHHHHHHHc--CCchHHhhhhcCCCCCCCCCHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF-CQ--RKNVVEDAIHAM--SLSDYANKLIGGHCYMKGLPCGER 253 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~-~~--~~~~v~~~l~~l--gL~~~~~~~ig~~~~~~~LSGGer 253 (641)
..+.++|++|++.+++ .||+||+.++.... .... .+ ....++++++.+ |+.+..++ .++.||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~------~~~~LSgG~~ 156 (226)
T cd03248 85 YLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC-SFECVKEAAQKAHAHSFISELASGYDTEVGE------KGSQLSGGQK 156 (226)
T ss_pred HHHhhEEEEecccHHHh-hhHHHHhccccCCC-CHHHHHHHHHHcCcHHHHHhccccccchhhc------CCCcCCHHHH
Confidence 1246999999998876 69999997643211 0000 00 112246777777 67666555 3469999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++. ++. .||++++|++|++
T Consensus 157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HHH-hCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999875 689999999875 564 5999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=322.19 Aligned_cols=216 Identities=19% Similarity=0.241 Sum_probs=176.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++|+++.++.. .+.+|+|+|+.+++||+++|+|+||||||||+++|+|+++|.+ |+|.++|++...
T Consensus 18 ~~i~~~~l~~~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~i~g~~i~~~~~~ 91 (257)
T cd03288 18 GEIKIHDLCVRYENN---LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFD---GKIVIDGIDISKLPLH 91 (257)
T ss_pred ceEEEEEEEEEeCCC---CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCC---CeEEECCEEhhhCCHH
Confidence 368999999998531 2469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGer 253 (641)
..+.++|++|++.+++ .|++||+... .. .....+.++++.+++.+..+....+ +..+..||||||
T Consensus 92 ~~~~~i~~v~q~~~l~~-~tv~~nl~~~------~~--~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~ 162 (257)
T cd03288 92 TLRSRLSIILQDPILFS-GSIRFNLDPE------CK--CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQR 162 (257)
T ss_pred HHhhhEEEECCCCcccc-cHHHHhcCcC------CC--CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHH
Confidence 1346999999998876 5999998431 00 1123455666677776655554311 124568999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|+|+++|++. .+.. ||++++|++|+++..|+++
T Consensus 163 qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~-~dri~~l~~G~i~~~g~~~ 239 (257)
T cd03288 163 QLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TILD-ADLVLVLSRGILVECDTPE 239 (257)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHHh-CCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999975 4899999999885 5554 9999999999999999987
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
++.+
T Consensus 240 ~~~~ 243 (257)
T cd03288 240 NLLA 243 (257)
T ss_pred HHHh
Confidence 7643
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=310.33 Aligned_cols=176 Identities=27% Similarity=0.399 Sum_probs=149.2
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------CCceEEEEcCCCc--
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-------PYGSYGFVERETT-- 192 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-------~~~~~~yv~Q~~~-- 192 (641)
++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++... ..+.++|++|++.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQS---GAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 3569999999999999999999999999999999999999875 999999987531 1246899999973
Q ss_pred cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEe
Q 006548 193 LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272 (641)
Q Consensus 193 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLD 272 (641)
++ ..||+||+.+..... .....+..++++++++.+||.+..++.+ ..||||||||++|||||+.+|++||||
T Consensus 81 ~~-~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 81 LF-AADVDQDVAFGPLNL-GLSEAEVERRVREALTAVGASGLRERPT------HCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred cc-cccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCchhhhhCCh------hhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 44 579999998865422 1111123456889999999988877755 499999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 006548 273 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (641)
Q Consensus 273 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (641)
|||+|||+.++..+.+.|++++++|+|||+++|++.
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 999999999999999999999877999999999873
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=305.97 Aligned_cols=168 Identities=28% Similarity=0.446 Sum_probs=149.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 180 (641)
++++|+++.+++. .+.+++|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~~---~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 74 (173)
T cd03246 1 LEVENVSFRYPGA---EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTS---GRVRLDGADISQWDPNEL 74 (173)
T ss_pred CEEEEEEEEcCCC---CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CeEEECCEEcccCCHHHH
Confidence 3689999988531 2469999999999999999999999999999999999999875 999999987532 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
.+.++|++|++.+++ .||+||+ ||||||||++|||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~~l--------------------------------------------LS~G~~qrv~la~ 109 (173)
T cd03246 75 GDHVGYLPQDDELFS-GSIAENI--------------------------------------------LSGGQRQRLGLAR 109 (173)
T ss_pred HhheEEECCCCcccc-CcHHHHC--------------------------------------------cCHHHHHHHHHHH
Confidence 346899999998887 4998876 8999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++. .+ +.||++++|++|++
T Consensus 110 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 110 ALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999877999999999874 55 57999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=355.86 Aligned_cols=218 Identities=21% Similarity=0.272 Sum_probs=180.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-CCCceeEEEECCEeCCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH-SARMYGEVFVNGAKSEMP-- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~-~~~~~G~I~~~G~~~~~~-- 180 (641)
..++++|+++.+... +.+.+|+|+|+++++||+++|+||||||||||||+|+|+.+| .+ |+|.++|++....
T Consensus 256 ~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~---G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 256 VILEARNLTCWDVIN--PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFE---GNVFINGKPVDIRNP 330 (500)
T ss_pred ceEEEeCCccccccc--ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC---eEEEECCEECCCCCH
Confidence 368999999876311 124699999999999999999999999999999999999985 54 9999999875321
Q ss_pred ----CceEEEEcCCC---ccCCCCCHHHHHHHHHHhcCC---C-ccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCC
Q 006548 181 ----YGSYGFVERET---TLIGSLTVREYLYYSALLQLP---G-FFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGL 248 (641)
Q Consensus 181 ----~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~---~-~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~L 248 (641)
++.++|++|+. .+++.+||+||+.++..-... . .....+++++++++.+++.+ ..++.+ ..|
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~L 404 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI------GRL 404 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc------ccC
Confidence 24689999995 588999999999875321110 0 11123456889999999963 456644 499
Q ss_pred CHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 249 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|.|||+++|++ +++.++||++++|++|+++.
T Consensus 405 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 405 SGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL-AEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999998899999988887 58889999999999999998
Q ss_pred EeChh
Q 006548 329 FGETL 333 (641)
Q Consensus 329 ~G~~~ 333 (641)
.++..
T Consensus 484 ~~~~~ 488 (500)
T TIGR02633 484 DFVNH 488 (500)
T ss_pred EEccc
Confidence 77653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=366.73 Aligned_cols=216 Identities=27% Similarity=0.383 Sum_probs=183.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|++ ..+.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 455 ~i~~~~vsf~y~~---~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~---G~I~idg~~i~~~~~~~ 528 (694)
T TIGR01846 455 AITFENIRFRYAP---DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH---GQVLVDGVDLAIADPAW 528 (694)
T ss_pred eEEEEEEEEEcCC---CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEehhhCCHHH
Confidence 6999999999953 23469999999999999999999999999999999999999975 999999987542
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++.++||+|++.+|+ .|++||+.++ .+. ..++.+.++++..++.+..++.+.|.+ ...+|||||||
T Consensus 529 ~r~~i~~v~q~~~lf~-~ti~eNi~~~----~~~---~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~q 600 (694)
T TIGR01846 529 LRRQMGVVLQENVLFS-RSIRDNIALC----NPG---APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQ 600 (694)
T ss_pred HHHhCeEEccCCeehh-hhHHHHHhcC----CCC---CCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHH
Confidence 1356999999999886 5999999653 111 235668888999998877665543322 34679999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|++||||||||+||+.++..+.+.|+++. +++|+|+++|++. .+ +.||+|++|++|++++.|+.++
T Consensus 601 ri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~-~~~d~ii~l~~G~i~~~g~~~~ 677 (694)
T TIGR01846 601 RIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS-TV-RACDRIIVLEKGQIAESGRHEE 677 (694)
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH-HH-HhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999985 5789999999984 44 5699999999999999999887
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 678 l~~ 680 (694)
T TIGR01846 678 LLA 680 (694)
T ss_pred HHH
Confidence 754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=312.01 Aligned_cols=197 Identities=22% Similarity=0.302 Sum_probs=163.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.++.. .+.+|+|+|+.+++||+++|+|+||||||||+++|+|+.+|.. |+|.++|.+...
T Consensus 6 ~l~~~~l~~~~~~~---~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 79 (207)
T cd03369 6 EIEVENLSVRYAPD---LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE---GKIEIDGIDISTIPLED 79 (207)
T ss_pred eEEEEEEEEEeCCC---CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CeEEECCEEhHHCCHHH
Confidence 58999999998531 2469999999999999999999999999999999999998875 999999987421
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
..+.++|++|++.+++ .||+||+.+.. . . ..+.+.+.++ .+ ..+..||||||||++||
T Consensus 80 ~~~~i~~v~q~~~~~~-~tv~~~l~~~~-----~-~--~~~~~~~~l~-------~~------~~~~~LS~G~~qrv~la 137 (207)
T cd03369 80 LRSSLTIIPQDPTLFS-GTIRSNLDPFD-----E-Y--SDEEIYGALR-------VS------EGGLNLSQGQRQLLCLA 137 (207)
T ss_pred HHhhEEEEecCCcccC-ccHHHHhcccC-----C-C--CHHHHHHHhh-------cc------CCCCcCCHHHHHHHHHH
Confidence 1346999999998886 59999996421 1 1 1122333333 12 24569999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
|+|+.+|++|||||||+|||+.++..+.+.|+++. +|.|+|+++|++. ++.. ||++++|++|+++..|++
T Consensus 138 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 138 RALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHhh-CCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999999999985 4899999888875 5555 999999999999988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=357.93 Aligned_cols=217 Identities=22% Similarity=0.345 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|+++.|+.. ..+.+|+|+|++++|||.++|+|+||||||||+|+|+|+++|.+ |+|.+||.+....
T Consensus 337 ~i~~~~v~f~y~~~--~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~---G~I~i~g~~i~~~~~~~ 411 (576)
T TIGR02204 337 EIEFEQVNFAYPAR--PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQS---GRILLDGVDLRQLDPAE 411 (576)
T ss_pred eEEEEEEEEECCCC--CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CEEEECCEEHHhcCHHH
Confidence 58999999999632 12579999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
++.++|++|++.+|+ .|++||+.++. +. ..++++.++++.+|+.+..++...|.+ ....|||||||
T Consensus 412 ~~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~----~~---~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 412 LRARMALVPQDPVLFA-ASVMENIRYGR----PD---ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HHHhceEEccCCcccc-ccHHHHHhcCC----CC---CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 246999999999885 59999997631 11 235678899999999877766544322 34569999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++||||++.+|++|+||||||+||+.+++.+++.|+++. +++|+|+++|++. ....||+|++|++|+++..|+.++
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~ 560 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAE 560 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHH
Confidence 9999999999999999999999999999999999999985 4799999999983 457799999999999999999877
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
..+
T Consensus 561 l~~ 563 (576)
T TIGR02204 561 LIA 563 (576)
T ss_pred HHH
Confidence 643
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=357.52 Aligned_cols=216 Identities=22% Similarity=0.257 Sum_probs=181.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|+. ..+.+|+|+|+++++||.++|+||||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 313 ~I~~~~v~~~y~~---~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~---G~i~~~g~~~~~~~~~~ 386 (569)
T PRK10789 313 ELDVNIRQFTYPQ---TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSE---GDIRFHDIPLTKLQLDS 386 (569)
T ss_pred cEEEEEEEEECCC---CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CEEEECCEEHhhCCHHH
Confidence 5899999999853 23469999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerq 254 (641)
.++.++|++|++.+|+ .|++||+.++. +. ..++.++++++..++.+...+.+.|. .....|||||||
T Consensus 387 ~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~~---~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~q 458 (569)
T PRK10789 387 WRSRLAVVSQTPFLFS-DTVANNIALGR----PD---ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ 458 (569)
T ss_pred HHhheEEEccCCeecc-ccHHHHHhcCC----CC---CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 1356999999999986 59999997631 11 23456778888888876655443322 234679999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|++|||||||++||+.++..+.+.|+++. +|+|+|+++|++. ..+.||+|++|++|+++..|+.++
T Consensus 459 Ri~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~ 535 (569)
T PRK10789 459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQ 535 (569)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999999985 5899999999984 346799999999999999999887
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 536 l~~ 538 (569)
T PRK10789 536 LAQ 538 (569)
T ss_pred HHH
Confidence 654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=354.10 Aligned_cols=211 Identities=21% Similarity=0.311 Sum_probs=178.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.+.++|+++ .+|+|+|+.+++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++....
T Consensus 257 ~l~~~~l~~----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~---G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 257 RLKVDNLSG----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTS---GYVTLDGHEVVTRSPQD 323 (501)
T ss_pred EEEEeCccc----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHHH
Confidence 578888863 37999999999999999999999999999999999998875 9999999875321
Q ss_pred --CceEEEEcCCC---ccCCCCCHHHHHHHHHHhcC----C-CccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCC
Q 006548 181 --YGSYGFVERET---TLIGSLTVREYLYYSALLQL----P-GFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (641)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~----~-~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LS 249 (641)
++.++|++|++ .+++.+||+||+.+...... . ....+.+++++++++.++|. +..++.+ ..||
T Consensus 324 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LS 397 (501)
T PRK10762 324 GLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI------GLLS 397 (501)
T ss_pred HHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch------hhCC
Confidence 24699999995 57888999999987532111 0 01112345688999999995 5666655 4999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 250 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||++++|++|+++..
T Consensus 398 gGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~ 476 (501)
T PRK10762 398 GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM-PEVLGMSDRILVMHEGRISGE 476 (501)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999988899999988886 588999999999999999999
Q ss_pred eChhHH
Q 006548 330 GETLAC 335 (641)
Q Consensus 330 G~~~~~ 335 (641)
|+++++
T Consensus 477 ~~~~~~ 482 (501)
T PRK10762 477 FTREQA 482 (501)
T ss_pred eccccC
Confidence 987654
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=306.77 Aligned_cols=174 Identities=23% Similarity=0.392 Sum_probs=151.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 181 (641)
++++|+++.++++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|.+... ..
T Consensus 1 i~~~~~~~~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 74 (178)
T cd03247 1 LSINNVSFSYPEQ---EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ---GEITLDGVPVSDLEKALS 74 (178)
T ss_pred CEEEEEEEEeCCC---CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CEEEECCEEHHHHHHHHH
Confidence 4689999988531 1369999999999999999999999999999999999998875 999999986421 13
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++ .|++||+ + ..||||||||++||||
T Consensus 75 ~~i~~~~q~~~~~~-~tv~~~i-----------------------------------~------~~LS~G~~qrv~lara 112 (178)
T cd03247 75 SLISVLNQRPYLFD-TTLRNNL-----------------------------------G------RRFSGGERQRLALARI 112 (178)
T ss_pred hhEEEEccCCeeec-ccHHHhh-----------------------------------c------ccCCHHHHHHHHHHHH
Confidence 46899999988875 6998876 2 3899999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|+.+|++|||||||+|||+.++..+++.|+++. ++.|+|+++|++. ++ ..||++++|++|++++.|
T Consensus 113 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 113 LLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999996 5889999999875 55 469999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=355.99 Aligned_cols=212 Identities=19% Similarity=0.266 Sum_probs=178.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|+++ +.+++|+|+.+++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++....
T Consensus 257 ~l~~~~~~~---------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 257 RLRLDGLKG---------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTA---GQVYLDGKPIDIRSPRD 324 (501)
T ss_pred EEEEecccc---------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCC---ceEEECCEECCCCCHHH
Confidence 578888863 148999999999999999999999999999999999998875 9999999875321
Q ss_pred --CceEEEEcCCC---ccCCCCCHHHHHHHHHHhcC-C-C---ccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCC
Q 006548 181 --YGSYGFVERET---TLIGSLTVREYLYYSALLQL-P-G---FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (641)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~-~-~---~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LS 249 (641)
++.++|++|++ .+++.+|+.||+.++..... + . .....++.++++++.+++. +..++.+ ..||
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LS 398 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI------MNLS 398 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc------ccCC
Confidence 24689999986 48889999999976432110 0 0 1112335688999999994 5667655 4999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 250 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
|||||||+|||+|+.+|++|||||||+|||+.++..++++|++++++|.|||+++|+. +++.++||++++|++|++++.
T Consensus 399 gGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~ 477 (501)
T PRK11288 399 GGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGE 477 (501)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999998899999988887 588999999999999999999
Q ss_pred eChhHH
Q 006548 330 GETLAC 335 (641)
Q Consensus 330 G~~~~~ 335 (641)
|+++++
T Consensus 478 ~~~~~~ 483 (501)
T PRK11288 478 LAREQA 483 (501)
T ss_pred EccccC
Confidence 987653
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=352.68 Aligned_cols=218 Identities=23% Similarity=0.256 Sum_probs=186.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|+++.|+..+ +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 4 ~l~~~nl~~~y~~~~-~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 4 LLELKDIRRSYPSGE-EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS---GTYRVAGQDVATLDADA 79 (648)
T ss_pred EEEEeeEEEEeCCCC-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEcCcCCHHH
Confidence 589999999995321 23569999999999999999999999999999999999999875 9999999875321
Q ss_pred -----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
++.++|++|+..+++.+|+.||+.+...... ....+.++++.++++.+||.+..++.+ ..||||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~lgl~~~~~~~~------~~LS~Gq~qr 152 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAG-LERKQRLLRAQELLQRLGLEDRVEYQP------SQLSGGQQQR 152 (648)
T ss_pred HHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCChhhhcCCc------ccCCHHHHHH
Confidence 2469999999999999999999987653221 111234567889999999998877755 4999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++. .+ +.||++++|++|++++.|++++.
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ-VA-AQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HH-HhCCEEEEEECCEEEeecCcccc
Confidence 99999999999999999999999999999999999999877999999999874 44 57999999999999999987654
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=302.71 Aligned_cols=229 Identities=21% Similarity=0.332 Sum_probs=196.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++++.++ ++||++||+++++||+.+||||||||||||.++|+|.-. ...++|+|.++|+++..
T Consensus 3 ~L~I~dLhv~v~~~----keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~-Y~Vt~G~I~~~GedI~~l~~~E 77 (251)
T COG0396 3 MLEIKDLHVEVEGK----KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDILELSPDE 77 (251)
T ss_pred eeEEeeeEEEecCc----hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC-ceEecceEEECCcccccCCHhH
Confidence 68999999999532 589999999999999999999999999999999999743 23467999999998532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCc--cchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~--~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqR 255 (641)
.+..+..-+|.|.=+|..|+.+.|..+.+.+.... ..+-.+.+++.++.+++.+ +++|.++ .++|||||||
T Consensus 78 RAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN-----~GFSGGEkKR 152 (251)
T COG0396 78 RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN-----EGFSGGEKKR 152 (251)
T ss_pred HHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC-----CCcCcchHHH
Confidence 13457788999999999999999988766543221 1234567889999999976 8888776 5899999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcC--CEEEEEeCCeEEEEeChh
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF--DRICLLSNGNTLFFGETL 333 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~--D~v~vL~~G~iv~~G~~~ 333 (641)
..|+..++.+|++.|||||-||||..+-+.|-+.++.++++|.+++++||+. .+..+. |+|.+|.+|+||..|.+
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~- 229 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP- 229 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-
Confidence 9999999999999999999999999999999999999999999999988886 566665 99999999999999999
Q ss_pred HHHHHhhhcCCCC
Q 006548 334 ACLQHFSNAGFPC 346 (641)
Q Consensus 334 ~~~~~f~~~g~~~ 346 (641)
++.+.+++.|+.|
T Consensus 230 el~~~le~~gy~~ 242 (251)
T COG0396 230 ELAEELEEKGYDW 242 (251)
T ss_pred HHHHHHHHhchHH
Confidence 8888888888754
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=306.77 Aligned_cols=174 Identities=30% Similarity=0.484 Sum_probs=148.7
Q ss_pred EEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-----
Q 006548 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY----- 181 (641)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~----- 181 (641)
+++|+++.|+ .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+.....
T Consensus 1 ~~~~l~~~~~-----~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYG-----GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS---GEILLDGKDLASLSPKELA 72 (180)
T ss_pred CeeEEEEEEC-----CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCcCCHHHHH
Confidence 3688999884 2469999999999999999999999999999999999998875 99999998653210
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++| +++.+|+.+..++. +..||||||||++|||+
T Consensus 73 ~~i~~~~q-----------------------------------~l~~~gl~~~~~~~------~~~LS~G~~qrl~lara 111 (180)
T cd03214 73 RKIAYVPQ-----------------------------------ALELLGLAHLADRP------FNELSGGERQRVLLARA 111 (180)
T ss_pred HHHhHHHH-----------------------------------HHHHcCCHhHhcCC------cccCCHHHHHHHHHHHH
Confidence 12333333 77888888776664 45999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|+.+|+++||||||+|||+.++..+.+.|++++++ |.|+|+++|++. ++.++||++++|++|++++.|
T Consensus 112 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 112 LAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999876 899999888874 778999999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=355.01 Aligned_cols=215 Identities=23% Similarity=0.293 Sum_probs=179.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|++ .+++|+|+|+++++||.++|+||||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 334 ~i~~~~v~~~y~~----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~ 406 (585)
T TIGR01192 334 AVEFRHITFEFAN----SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTV---GQILIDGIDINTVTRES 406 (585)
T ss_pred eEEEEEEEEECCC----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCC---CEEEECCEEhhhCCHHH
Confidence 5999999999853 2468999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerq 254 (641)
.++.++||+|++.+++ .|++||+.++. +. ..++.+.++++..++.+...+.++|. .....|||||||
T Consensus 407 ~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~~---~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~q 478 (585)
T TIGR01192 407 LRKSIATVFQDAGLFN-RSIRENIRLGR----EG---ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQ 478 (585)
T ss_pred HHhheEEEccCCccCc-ccHHHHHhcCC----CC---CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHH
Confidence 1357999999999885 69999997641 11 12345667777777766554443221 245679999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++. +++|+|+++|++. .+ +.||+|++|++|+++..|+.++
T Consensus 479 rl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 555 (585)
T TIGR01192 479 RLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS-TV-RNADLVLFLDQGRLIEKGSFQE 555 (585)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH-HH-HcCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999885 5899999999984 44 6699999999999999999877
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
..+
T Consensus 556 l~~ 558 (585)
T TIGR01192 556 LIQ 558 (585)
T ss_pred HHH
Confidence 654
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=330.70 Aligned_cols=186 Identities=27% Similarity=0.447 Sum_probs=161.7
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccch
Q 006548 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ 217 (641)
Q Consensus 141 IiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~ 217 (641)
|+||||||||||||+|+|+.+|++ |+|.++|++... ..+.++|++|+..+++.+||+||+.|+...+. ....+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~---G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~-~~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDS---GSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRK-VPRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcC-CCHHH
Confidence 689999999999999999999875 999999987532 23569999999999999999999998754321 11112
Q ss_pred HHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 006548 218 RKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST- 296 (641)
Q Consensus 218 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~- 296 (641)
.+++++++++.++|.+..++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++
T Consensus 77 ~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 77 IKPRVLEALRLVQLEEFADRKP------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHcCCcchhcCCh------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 3457889999999998887754 499999999999999999999999999999999999999999999999865
Q ss_pred CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 297 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 297 g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|+|+|+++|++ .++.++||++++|++|+++..|+++++.+
T Consensus 151 g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 151 GITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 89999988887 57899999999999999999999988754
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=309.31 Aligned_cols=201 Identities=23% Similarity=0.256 Sum_probs=162.2
Q ss_pred EEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------
Q 006548 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------- 179 (641)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------- 179 (641)
.+.|+.+.++. .+.+++|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|.+...
T Consensus 2 ~~~~~~~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~~ 74 (218)
T cd03290 2 QVTNGYFSWGS----GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLE---GKVHWSNKNESEPSFEATR 74 (218)
T ss_pred eeeeeEEecCC----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CeEEECCcccccccccccc
Confidence 46788888742 2569999999999999999999999999999999999998875 999999975421
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGE 252 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGe 252 (641)
.++.++|++|++.++ ..|++||+.+... . ..+..+++++.+++.+..+....+ +..+..|||||
T Consensus 75 ~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~----~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~ 145 (218)
T cd03290 75 SRNRYSVAYAAQKPWLL-NATVEENITFGSP----F----NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQ 145 (218)
T ss_pred hhhcceEEEEcCCCccc-cccHHHHHhhcCc----C----CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHH
Confidence 124699999999887 5799999976421 1 122345677788886655432110 23567999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHH--HHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV--TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~--~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
||||+|||+|+.+|++|||||||+|||+.++..+++ +++.++++|.|+|+++|++. .+ ..||++++|++|.
T Consensus 146 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 146 RQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 999999999999999999999999999999999998 67777666899999999885 45 5699999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=383.26 Aligned_cols=221 Identities=20% Similarity=0.292 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--------------------
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-------------------- 164 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~-------------------- 164 (641)
.++++||+|.|+++ ..+++|+|+|+++++|+.+||+||||||||||+++|.|+++|..
T Consensus 1165 ~I~f~nVsF~Y~~~--~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR--PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred eEEEEEEEEECCCC--CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 59999999999642 23579999999999999999999999999999999999998720
Q ss_pred -------------------------------CceeEEEECCEeCCC-----CCceEEEEcCCCccCCCCCHHHHHHHHHH
Q 006548 165 -------------------------------RMYGEVFVNGAKSEM-----PYGSYGFVERETTLIGSLTVREYLYYSAL 208 (641)
Q Consensus 165 -------------------------------~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~ 208 (641)
..+|+|++||.++.. .++.++||+|++.|| +.|++|||.++.
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~- 1320 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGK- 1320 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCC-
Confidence 036999999998632 245799999999998 579999998751
Q ss_pred hcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHH
Q 006548 209 LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (641)
Q Consensus 209 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~ 283 (641)
+. ..++.++++++..++.++...++.|.+ ....||||||||++|||||+++|+|||||||||+||+.+.
T Consensus 1321 ---~~---at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE 1394 (1466)
T PTZ00265 1321 ---ED---ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSE 1394 (1466)
T ss_pred ---CC---CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 11 245668999999999887766554432 3456999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeC----CeEE-EEeChhHHHH
Q 006548 284 LLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN----GNTL-FFGETLACLQ 337 (641)
Q Consensus 284 ~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~----G~iv-~~G~~~~~~~ 337 (641)
+.|.+.|+++. .+++|+|+++|+++ ..+.||+|++|++ |+++ +.|+.+++++
T Consensus 1395 ~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1395 KLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 99999999986 46899999999974 4567999999999 9955 8999887753
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=310.98 Aligned_cols=190 Identities=26% Similarity=0.335 Sum_probs=166.0
Q ss_pred eEEEEeEEEEEeccc--cc--ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC
Q 006548 105 SVVWKDLTVTIKGKR--RY--SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~--~~--~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~ 180 (641)
.++++||++.|..+. .. ..++++||||.+++||+++|+|+||||||||-|+|.|+.+|++ |+|+++|++....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~---G~i~f~g~~i~~~ 80 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS---GEILFEGKDITKL 80 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCC---ceEEEcCcchhhc
Confidence 589999999996532 11 2479999999999999999999999999999999999999976 9999999864211
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
. ..+..+++.++|+.+||.+ .+++ +|++||||||||++||
T Consensus 81 ~---------------------------------~~~~~~~v~elL~~Vgl~~~~~~r------yPhelSGGQrQRi~IA 121 (268)
T COG4608 81 S---------------------------------KEERRERVLELLEKVGLPEEFLYR------YPHELSGGQRQRIGIA 121 (268)
T ss_pred c---------------------------------hhHHHHHHHHHHHHhCCCHHHhhc------CCcccCchhhhhHHHH
Confidence 1 1135567999999999864 5555 6789999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|||+.+|+++++|||+|+||...+.+++++|++++++ |.|.++++|+. ..+..++|||.+|..|++|+.|+.++++.
T Consensus 122 RALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 122 RALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999999999999999999999999999999955 99999988876 58999999999999999999999998864
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=320.30 Aligned_cols=229 Identities=23% Similarity=0.284 Sum_probs=196.9
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSE--- 178 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~--- 178 (641)
..+.++||++.+.... +...++++|||.+++||.+||+|+||||||-..+.+.|+++... ..+|+|.++|++.-
T Consensus 5 ~lL~v~nLsV~f~~~~-~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 5 PLLSIRNLSVAFHQEG-GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred cceeeeccEEEEecCC-cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 4689999999996432 46789999999999999999999999999999999999997632 35799999998731
Q ss_pred ------CCCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCH
Q 006548 179 ------MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (641)
Q Consensus 179 ------~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG 250 (641)
.+-.+|++++|++ .|.|-.|+..-+....+++........++++.++|+.+|+.+-..++ +.||++|||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl---~~yPHeLSG 160 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRL---DAYPHELSG 160 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhh---hhCCcccCc
Confidence 1124699999997 67888999988887776654433334677899999999998777665 569999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
||||||.||+||+.+|++||.||||++||...+.+|+++|++|.++ |..+++++|+. .-+.+++|||+||.+|++|+.
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ivE~ 239 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGEIVET 239 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccEEeec
Confidence 9999999999999999999999999999999999999999999855 99999987776 589999999999999999999
Q ss_pred eChhHHHH
Q 006548 330 GETLACLQ 337 (641)
Q Consensus 330 G~~~~~~~ 337 (641)
|.+++++.
T Consensus 240 ~~t~~lF~ 247 (534)
T COG4172 240 GTTETLFA 247 (534)
T ss_pred CcHHHHhh
Confidence 99988763
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=315.64 Aligned_cols=204 Identities=22% Similarity=0.314 Sum_probs=167.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..++++|+++. .+.+|+|+|+.+++||+++|+|+||||||||+++|+|+++|.. |+|.++| .
T Consensus 38 ~~l~i~nls~~-------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~---G~I~i~g--------~ 99 (282)
T cd03291 38 NNLFFSNLCLV-------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSE---GKIKHSG--------R 99 (282)
T ss_pred CeEEEEEEEEe-------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC--------E
Confidence 46899999984 1469999999999999999999999999999999999999875 9999988 3
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVRI 258 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqRv~I 258 (641)
++|++|++.+++. ||+||+.+.... ...++.+.++.+++.+..+....+ ...+..||||||||++|
T Consensus 100 i~yv~q~~~l~~~-tv~enl~~~~~~--------~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~l 170 (282)
T cd03291 100 ISFSSQFSWIMPG-TIKENIIFGVSY--------DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISL 170 (282)
T ss_pred EEEEeCccccccc-CHHHHhhccccc--------CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHH
Confidence 8999999988874 999999763210 112344566667776655443211 12346899999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTL-KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||+|+.+|++|||||||+|||+.++..+.+.+ +++. ++.|||+++|++. .+ ..||++++|++|++++.|+++++.+
T Consensus 171 AraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 171 ARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999865 5554 4789999888875 45 5799999999999999999887653
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=329.77 Aligned_cols=213 Identities=22% Similarity=0.304 Sum_probs=186.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..++++|+++.|+ ...+++|||+.+++||+.||+|+||||||||+++|.|.++|++ |+|.++|++....
T Consensus 3 ~~l~~~~itK~f~-----~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~---GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 3 PALEMRGITKRFP-----GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS---GEIRVDGKEVRIKSPR 74 (501)
T ss_pred ceEEEeccEEEcC-----CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCc---ceEEECCEEeccCCHH
Confidence 3589999999994 5679999999999999999999999999999999999999986 9999999975432
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhcCC--CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLP--GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~--~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
+..||+|.|+..|++++||.||+..+..-... ......+++++++.+..||.=-.|.+++ +||-|||||
T Consensus 75 dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~------dLsVG~qQR 148 (501)
T COG3845 75 DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA------DLSVGEQQR 148 (501)
T ss_pred HHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee------cCCcchhHH
Confidence 24699999999999999999999876432110 1122356789999999999866666554 999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
|.|-++|.++|++|||||||+-|-|....++++.|++++++|+|||+++|.. .|+.++|||+.||.+|+++..-+
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999999999999999999999999988876 69999999999999999987665
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=348.81 Aligned_cols=211 Identities=18% Similarity=0.214 Sum_probs=176.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|++. .+|+|+|+.+++||+++|+||||||||||+|+|+|+.+|++ |+|.++|.+....
T Consensus 268 ~l~~~~l~~----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 268 VLTVEDLTG----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG---GRIMLNGKEINALSTAQ 334 (510)
T ss_pred eEEEeCCCC----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---cEEEECCEECCCCCHHH
Confidence 588888872 26999999999999999999999999999999999998875 9999999875321
Q ss_pred --CceEEEEcCCC---ccCCCCCHHHHHHHHHHh--cCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHH
Q 006548 181 --YGSYGFVERET---TLIGSLTVREYLYYSALL--QLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~--~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGe 252 (641)
++.++|++|+. .+++.+|+.||+...... .........++.++++++.+||. +..++.+ ..|||||
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG~ 408 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA------RTLSGGN 408 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc------ccCCcHH
Confidence 24689999984 478889999998642111 11001112345688999999996 6677654 4999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||++++|++|+++..|.+
T Consensus 409 kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~ 487 (510)
T PRK15439 409 QQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL-EEIEQMADRVLVMHQGEISGALTG 487 (510)
T ss_pred HHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEcc
Confidence 9999999999999999999999999999999999999999988899999988887 588999999999999999999877
Q ss_pred hHH
Q 006548 333 LAC 335 (641)
Q Consensus 333 ~~~ 335 (641)
+++
T Consensus 488 ~~~ 490 (510)
T PRK15439 488 AAI 490 (510)
T ss_pred ccC
Confidence 543
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=349.64 Aligned_cols=210 Identities=18% Similarity=0.218 Sum_probs=178.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..++++||++.|++++...+.+|+|+|+++++||++||+||||||||||+++|+|+++|++ |+|.+||.+....
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~---G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE---GEILLDGAAVSADSRD 412 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHH
Confidence 3699999999996421112469999999999999999999999999999999999999975 9999999886431
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
++.++||+|++.+|. .|+++|.. + ...+++++++++.+++.+..+..++|.+....||||||||++|
T Consensus 413 ~~~~~i~~v~q~~~lf~-~ti~~n~~-------~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlal 481 (555)
T TIGR01194 413 DYRDLFSAIFADFHLFD-DLIGPDEG-------E---HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLAL 481 (555)
T ss_pred HHHhhCcEEccChhhhh-hhhhcccc-------c---chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHH
Confidence 256899999998885 48888841 1 1245568899999999998888777777778999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK-KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~-~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
||||+.+|++|||||||++||+.++..+.+.+. .+..+|+|+|+++|++. ..+.||+|++|++|+++..
T Consensus 482 aRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 482 ICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999998664 56567899999999874 4578999999999999854
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=345.35 Aligned_cols=207 Identities=18% Similarity=0.261 Sum_probs=173.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 185 (641)
++++|++++|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+++|+. |+|.++|. ..++
T Consensus 2 l~i~~ls~~~~-----~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~~~------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFG-----AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSA---GNVSLDPN------ERLG 67 (530)
T ss_pred EEEEEEEEEeC-----CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CEEE
Confidence 68999999984 3469999999999999999999999999999999999998875 99999873 3589
Q ss_pred EEcCCCccCCCCCHHHHHHHHHH-h-----------cCCC---c----------------cchHHHHHHHHHHHcCCchH
Q 006548 186 FVERETTLIGSLTVREYLYYSAL-L-----------QLPG---F----------------FCQRKNVVEDAIHAMSLSDY 234 (641)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~-~-----------~~~~---~----------------~~~~~~~v~~~l~~lgL~~~ 234 (641)
|++|++.+++.+||+|++.++.. . ..+. . ..+.+++++++++.+||.+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 99999989999999999976421 0 0000 0 00123568889999999764
Q ss_pred H-hhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHh
Q 006548 235 A-NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 313 (641)
Q Consensus 235 ~-~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~ 313 (641)
. ++. +..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||+++|+. ..+.+
T Consensus 148 ~~~~~------~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~-~~~~~ 217 (530)
T PRK15064 148 QHYGL------MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDR-HFLNS 217 (530)
T ss_pred HhcCc------hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCH-HHHHh
Confidence 4 333 459999999999999999999999999999999999999999999864 588999988876 57889
Q ss_pred cCCEEEEEeCCeE-EEEeChhHHH
Q 006548 314 LFDRICLLSNGNT-LFFGETLACL 336 (641)
Q Consensus 314 ~~D~v~vL~~G~i-v~~G~~~~~~ 336 (641)
+||+|++|++|++ ++.|++++..
T Consensus 218 ~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 218 VCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred hcceEEEEeCCEEEEecCCHHHHH
Confidence 9999999999999 5889887654
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=305.31 Aligned_cols=195 Identities=15% Similarity=0.127 Sum_probs=159.3
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-ECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 006548 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-VNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (641)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~-~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (641)
.+|+|||+++++||+++|+||||||||||+|+|+|+.+|++ |+|. ++|... .+.++..+++.+|++||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~s---G~i~~~~~~~~--------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDE---GDFIGLRGDAL--------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCC---CCEEEecCcee--------ccccccccCCcCcHHHH
Confidence 37999999999999999999999999999999999998875 9997 777532 12345678899999999
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHH
Q 006548 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (641)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~ 282 (641)
+.+...... . ..++..+.+.+.++|.+..++.++ .||||||||++|||||+.+|+++||||||++||+.+
T Consensus 70 l~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~------~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~ 139 (213)
T PRK15177 70 ARMMASLYG-L---DGDEFSHFCYQLTQLEQCYTDRVS------EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNAT 139 (213)
T ss_pred HHHHHHHcC-C---CHHHHHHHHHHHhChhHHhhchHh------hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH
Confidence 988654321 1 112223344566788877777654 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHhhh
Q 006548 283 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341 (641)
Q Consensus 283 ~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~ 341 (641)
+..+.+.|.+..+ ++++|+++|++ .++..+||++++|++|++++.|+.+++.++++.
T Consensus 140 ~~~~~~~l~~~~~-~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 140 QLRMQAALACQLQ-QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHhh-CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 9999998865443 35788877776 478889999999999999999999888766543
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=301.20 Aligned_cols=190 Identities=22% Similarity=0.284 Sum_probs=159.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCceE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGSY 184 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-~~~~~ 184 (641)
++++|+++++. .+.++ ++|+++++||+++|+|+||||||||+++|+|+.+|++ |+|.++|.+... ..+.+
T Consensus 2 l~~~~l~~~~~-----~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 2 LSLHQLQFNIE-----QKNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSS---GNIYYKNCNINNIAKPYC 72 (195)
T ss_pred eEEEEeeEEEC-----CcEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCcccChhhhhhE
Confidence 67999999984 23455 4999999999999999999999999999999999875 999999986532 12458
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHh
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (641)
+|++|+..+++.+||+||+.+..... ...++++++++.+++.+..++.+ +.||||||||++|||||+.
T Consensus 73 ~~~~~~~~~~~~~tv~~~l~~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~~rl~la~al~~ 140 (195)
T PRK13541 73 TYIGHNLGLKLEMTVFENLKFWSEIY------NSAETLYAAIHYFKLHDLLDEKC------YSLSSGMQKIVAIARLIAC 140 (195)
T ss_pred EeccCCcCCCccCCHHHHHHHHHHhc------ccHHHHHHHHHHcCCHhhhccCh------hhCCHHHHHHHHHHHHHhc
Confidence 99999988888899999998754321 12346788899999988777754 4999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEE
Q 006548 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 318 (641)
Q Consensus 265 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v 318 (641)
+|++|+|||||+|||+.++..+.+.|++..++|+|+|+++|++. .+ ..+|-|
T Consensus 141 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i-~~~~~~ 192 (195)
T PRK13541 141 QSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES-SI-KSAQIL 192 (195)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc-cc-chhhee
Confidence 99999999999999999999999999887777899999999874 33 346654
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=292.98 Aligned_cols=156 Identities=25% Similarity=0.450 Sum_probs=137.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
++++|+++.|+ .+++|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+....
T Consensus 1 l~~~~l~~~~~-----~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~ 72 (163)
T cd03216 1 LELRGITKRFG-----GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS---GEILVDGKEVSFASPRDA 72 (163)
T ss_pred CEEEEEEEEEC-----CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEECCcCCHHHH
Confidence 46899999984 2469999999999999999999999999999999999999875 9999999764310
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
.+.++|++| ||||||||++||
T Consensus 73 ~~~~i~~~~q----------------------------------------------------------LS~G~~qrl~la 94 (163)
T cd03216 73 RRAGIAMVYQ----------------------------------------------------------LSVGERQMVEIA 94 (163)
T ss_pred HhcCeEEEEe----------------------------------------------------------cCHHHHHHHHHH
Confidence 123444444 999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
|||+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++ .++.+.||++++|++|++++
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999987799999988886 46888999999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=296.49 Aligned_cols=166 Identities=30% Similarity=0.509 Sum_probs=145.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 180 (641)
++++|+++.+.++ ...+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|++... .
T Consensus 1 l~~~~l~~~~~~~---~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 74 (171)
T cd03228 1 IEFKNVSFSYPGR---PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTS---GEILIDGVDLRDLDLESL 74 (171)
T ss_pred CEEEEEEEEcCCC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---CEEEECCEEhhhcCHHHH
Confidence 3688999988532 1369999999999999999999999999999999999999875 999999987532 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
.+.++|++|++.+++ .|+.||+ |||||||||+|||
T Consensus 75 ~~~i~~~~~~~~~~~-~t~~e~l--------------------------------------------LS~G~~~rl~la~ 109 (171)
T cd03228 75 RKNIAYVPQDPFLFS-GTIRENI--------------------------------------------LSGGQRQRIAIAR 109 (171)
T ss_pred HhhEEEEcCCchhcc-chHHHHh--------------------------------------------hCHHHHHHHHHHH
Confidence 246899999987775 5888776 8999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|+|+++|++. ++.. ||++++|++|+
T Consensus 110 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 110 ALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 99999999999999999999999999999999964 689999888874 6666 99999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=294.15 Aligned_cols=164 Identities=29% Similarity=0.412 Sum_probs=143.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 185 (641)
++++|+++.+++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|. +.++
T Consensus 1 i~~~~~~~~~~~----~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~~~------~~i~ 67 (166)
T cd03223 1 IELENLSLATPD----GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGS---GRIGMPEG------EDLL 67 (166)
T ss_pred CEEEEEEEEcCC----CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCC------ceEE
Confidence 368999998842 2469999999999999999999999999999999999998875 99999873 5699
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC
Q 006548 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (641)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (641)
|++|++.++ ..|++||+.+. .+..||||||||++|||||+.+
T Consensus 68 ~~~q~~~~~-~~tv~~nl~~~-------------------------------------~~~~LS~G~~~rv~laral~~~ 109 (166)
T cd03223 68 FLPQRPYLP-LGTLREQLIYP-------------------------------------WDDVLSGGEQQRLAFARLLLHK 109 (166)
T ss_pred EECCCCccc-cccHHHHhhcc-------------------------------------CCCCCCHHHHHHHHHHHHHHcC
Confidence 999998765 67999998541 1248999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 266 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
|++|+|||||+|||+.++..+.+.|+++ +.|+|+++|++. . ...||++++|++|-
T Consensus 110 p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~-~-~~~~d~i~~l~~~~ 164 (166)
T cd03223 110 PKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS-L-WKFHDRVLDLDGEG 164 (166)
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh-H-HhhCCEEEEEcCCC
Confidence 9999999999999999999999999986 589999999974 3 47999999998653
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=311.05 Aligned_cols=188 Identities=18% Similarity=0.203 Sum_probs=154.6
Q ss_pred eeeceeeEE-----eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCH
Q 006548 125 VVKSSNGYA-----LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTV 199 (641)
Q Consensus 125 iL~~vs~~i-----~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV 199 (641)
.++|+++.+ ++||+++|+||||||||||+++|+|+++|++ |+|.++|. .++|++|+....+.+||
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~---G~i~~~g~-------~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDE---GDIEIELD-------TVSYKPQYIKADYEGTV 78 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---CeEEECCc-------eEEEecccccCCCCCCH
Confidence 445555555 5799999999999999999999999999875 99999984 58999999887778999
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCC
Q 006548 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279 (641)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD 279 (641)
+|++.+...... ......+++++.++|.+..++.++ .|||||||||+||++|+.+|+++||||||++||
T Consensus 79 ~e~l~~~~~~~~-----~~~~~~~~~l~~l~l~~~~~~~~~------~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 79 RDLLSSITKDFY-----THPYFKTEIAKPLQIEQILDREVP------ELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred HHHHHHHhhhcc-----ccHHHHHHHHHHcCCHHHhhCChh------hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 999975432111 112346789999999888777554 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEE--EEeChhH
Q 006548 280 SVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL--FFGETLA 334 (641)
Q Consensus 280 ~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv--~~G~~~~ 334 (641)
+.++..+.+.|++++++ |+|||+++|+. .++..+||++++|+++..+ ..+++.+
T Consensus 148 ~~~~~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 148 VEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 99999999999999854 89999988886 5788899999999765433 3344444
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=303.94 Aligned_cols=213 Identities=27% Similarity=0.383 Sum_probs=180.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE----- 178 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~----- 178 (641)
..+.++|+++.+. +|+||+|+|++|+|||..+|+|||||||||||++++|.++|++ |.+.+.|+...
T Consensus 30 ~li~l~~v~v~r~-----gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pss---g~~~~~G~~~G~~~~~ 101 (257)
T COG1119 30 PLIELKNVSVRRN-----GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSS---GDVTLLGRRFGKGETI 101 (257)
T ss_pred ceEEecceEEEEC-----CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCC---CceeeeeeeccCCcch
Confidence 4689999999884 5789999999999999999999999999999999999999874 99999998632
Q ss_pred -CCCceEEEEcCC--CccCCCCCHHHHHHHHH--HhcCCC-cc-chHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHH
Q 006548 179 -MPYGSYGFVERE--TTLIGSLTVREYLYYSA--LLQLPG-FF-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 179 -~~~~~~~yv~Q~--~~l~~~lTV~E~l~~~~--~~~~~~-~~-~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG 251 (641)
..+++||+|.-+ ..+.+..+|+|.+.-+. ...... .. ....+++..+++.+|+.+.+|+..+ .||-|
T Consensus 102 ~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~------~LS~G 175 (257)
T COG1119 102 FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG------SLSQG 175 (257)
T ss_pred HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh------hcCHh
Confidence 124679999643 44556778888774322 122221 11 2356778999999999999999776 99999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
|||||-|||||+.+|++||||||++|||...+..+.+.|.+++.. +.++|+++||. +++-..+++++++++|+++++
T Consensus 176 e~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~ 254 (257)
T COG1119 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQ 254 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCceeec
Confidence 999999999999999999999999999999999999999999854 78999999998 589999999999999999998
Q ss_pred eC
Q 006548 330 GE 331 (641)
Q Consensus 330 G~ 331 (641)
|.
T Consensus 255 g~ 256 (257)
T COG1119 255 GK 256 (257)
T ss_pred cc
Confidence 74
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=348.14 Aligned_cols=187 Identities=28% Similarity=0.397 Sum_probs=159.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||++.|++ .+++|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|.+||.+....
T Consensus 334 ~I~~~~vsf~Y~~----~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~---G~I~i~g~~i~~~~~~l 406 (529)
T TIGR02868 334 TLELRDLSFGYPG----SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQ---GEVTLDGVSVSSLQDEL 406 (529)
T ss_pred eEEEEEEEEecCC----CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEhhhHHHHH
Confidence 5999999999953 2359999999999999999999999999999999999999975 9999999875421
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCC-----CCCCCHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERRR 255 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~-----~~~LSGGerqR 255 (641)
++.++||+|++.+|+. |++||+.++. +. ..+++++++++..++.+..++++.|.+. ...||||||||
T Consensus 407 r~~i~~V~Q~~~lF~~-TI~eNI~~g~----~~---~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQR 478 (529)
T TIGR02868 407 RRRISVFAQDAHLFDT-TVRDNLRLGR----PD---ATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQR 478 (529)
T ss_pred HhheEEEccCcccccc-cHHHHHhccC----CC---CCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHH
Confidence 3479999999999964 9999997741 11 2456788999999998876655443332 35699999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCC
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (641)
++|||||+.+|+||+||||||+||+.++..+.+.|+++. +++|+|+++|++
T Consensus 479 iaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 479 LALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 999999999999999999999999999999999999864 478999999974
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=288.92 Aligned_cols=192 Identities=21% Similarity=0.354 Sum_probs=167.8
Q ss_pred cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----CceEEEEcCCCccCC
Q 006548 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YGSYGFVERETTLIG 195 (641)
Q Consensus 121 ~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~ 195 (641)
...++|+++|+.+.+||.++|.||||||||||+|+++.+.+|++ |++++.|++.... +++++||.|.+.||+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~---G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCC---ceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 45689999999999999999999999999999999999999986 9999999986432 357999999999998
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCC
Q 006548 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (641)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEP 274 (641)
. ||++|+.|+-.++.... ......+.|+.+++.+ ..++.+ .+||||||||++|+|.|..-|+||+||||
T Consensus 91 ~-tVeDNlifP~~~r~rr~---dr~aa~~llar~~l~~~~L~k~i------t~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRRP---DRAAALDLLARFALPDSILTKNI------TELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred c-chhhccccchHHhccCC---ChHHHHHHHHHcCCchhhhcchh------hhccchHHHHHHHHHHhhcCCceEEecCc
Confidence 6 99999999877664321 3455778899999965 455544 49999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 275 LYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 275 tsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
||+||+.+++.|-++|.++. +++..++.++|++ ++..+.+|+++-+..|++
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 99999999999999999987 6789999988888 477889999999999875
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=326.01 Aligned_cols=221 Identities=24% Similarity=0.318 Sum_probs=183.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..+.++++++.=+ ...+.+|+|+||.+.+||.+||+||||||||||.|+|.|..+|.+ |.|.+||.+.+..
T Consensus 333 g~L~Ve~l~~~PP---g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~---G~VRLDga~l~qWd~e 406 (580)
T COG4618 333 GALSVERLTAAPP---GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS---GSVRLDGADLRQWDRE 406 (580)
T ss_pred ceeeEeeeeecCC---CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCC---CcEEecchhhhcCCHH
Confidence 4689999998432 245789999999999999999999999999999999999999975 9999999875322
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (641)
-+++||.||+-.||+. ||.||+. |...+ ...+.|-++.+..|..+..-+.+.|++ -...||||||
T Consensus 407 ~lG~hiGYLPQdVeLF~G-TIaeNIa-----Rf~~~--~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQR 478 (580)
T COG4618 407 QLGRHIGYLPQDVELFDG-TIAENIA-----RFGEE--ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQR 478 (580)
T ss_pred HhccccCcCcccceecCC-cHHHHHH-----hcccc--CCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHH
Confidence 2579999999999975 9999994 22111 133345555555555555444443333 3357999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
||+++||||-.+|.+++||||-|+||......+.+.|.+++++|.|+|+++|.|+ +...+|+|++|++|++-.+|+.+
T Consensus 479 QRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~ 556 (580)
T COG4618 479 QRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPRE 556 (580)
T ss_pred HHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHH
Confidence 9999999999999999999999999999999999999999999999999999984 67889999999999999999999
Q ss_pred HHHHHhh
Q 006548 334 ACLQHFS 340 (641)
Q Consensus 334 ~~~~~f~ 340 (641)
|++..+.
T Consensus 557 eVLa~~~ 563 (580)
T COG4618 557 EVLAKVL 563 (580)
T ss_pred HHHHHhc
Confidence 9988654
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=344.30 Aligned_cols=209 Identities=24% Similarity=0.287 Sum_probs=173.9
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..++++||++.|.+ .+.+|+|+|+++++||+++|+|||||||||||++|+|+++|++ |+|.+++. ..
T Consensus 5 ~~l~i~~l~~~y~~----~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~---G~i~~~~~------~~ 71 (556)
T PRK11819 5 YIYTMNRVSKVVPP----KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE---GEARPAPG------IK 71 (556)
T ss_pred EEEEEeeEEEEeCC----CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CE
Confidence 36899999999941 3579999999999999999999999999999999999998875 99999752 46
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHH-h--------------cCCCcc--------------------chHHHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSAL-L--------------QLPGFF--------------------CQRKNVVEDAIHA 228 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~-~--------------~~~~~~--------------------~~~~~~v~~~l~~ 228 (641)
+|||+|++.+++.+||.||+.++.. . ..+... .+..++++++++.
T Consensus 72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 9999999999999999999987531 0 000000 0113467888999
Q ss_pred cCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 006548 229 MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (641)
Q Consensus 229 lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (641)
+||.. .++.+ .+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. .|||+++|++
T Consensus 152 ~gl~~-~~~~~------~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~- 220 (556)
T PRK11819 152 LRCPP-WDAKV------TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDR- 220 (556)
T ss_pred CCCCc-ccCch------hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCH-
Confidence 99953 55544 4999999999999999999999999999999999999999999999873 4888888876
Q ss_pred HHHHhcCCEEEEEeCCeEE-EEeChhHHH
Q 006548 309 TEVFGLFDRICLLSNGNTL-FFGETLACL 336 (641)
Q Consensus 309 ~~i~~~~D~v~vL~~G~iv-~~G~~~~~~ 336 (641)
+++.++||+|++|++|+++ +.|+.++..
T Consensus 221 ~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 221 YFLDNVAGWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred HHHHhhcCeEEEEeCCEEEEecCCHHHHH
Confidence 5888999999999999986 788876543
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=342.64 Aligned_cols=204 Identities=25% Similarity=0.349 Sum_probs=174.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|. +.
T Consensus 318 ~~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~---G~i~~~~~------~~ 383 (530)
T PRK15064 318 NALEVENLTKGFD-----NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS---GTVKWSEN------AN 383 (530)
T ss_pred ceEEEEeeEEeeC-----CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCc------eE
Confidence 3699999999984 3469999999999999999999999999999999999998875 99999873 46
Q ss_pred EEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 184 YGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 184 ~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
++|++|+.. +++.+||+|++.+.. .. ...+++++++++.+|+. +..++.+ ..|||||||||+|||
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~---~~---~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgGq~qrv~la~ 451 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWR---QE---GDDEQAVRGTLGRLLFSQDDIKKSV------KVLSGGEKGRMLFGK 451 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhc---cC---CccHHHHHHHHHHcCCChhHhcCcc------cccCHHHHHHHHHHH
Confidence 999999863 566799999986421 11 12345688999999994 6666654 499999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeChhHHHH
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 337 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 337 (641)
+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||+++|++ +++.++||++++|++|+++ +.|++++..+
T Consensus 452 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 452 LMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 999999999999999999999999999999887 35899988886 5888999999999999998 8888876543
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=357.05 Aligned_cols=217 Identities=23% Similarity=0.324 Sum_probs=184.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||+|.|+. ++..+||+|+|+++++|+.+||+|||||||||...+|-..+.|.. |.|.+||.+++..
T Consensus 987 ~I~~~~V~F~YPs--RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~---G~V~IDg~dik~lnl~~ 1061 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPT--RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA---GKVKIDGVDIKDLNLKW 1061 (1228)
T ss_pred EEEEeeeEeeCCC--CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---CeEEECCcccccCCHHH
Confidence 6999999999985 367889999999999999999999999999999999999999976 9999999886432
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHHHH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerq 254 (641)
++++|.|.|+|.||. -|++||+.|+. .+ ...+++.++++..+..++...++.|. +...+|||||||
T Consensus 1062 LR~~i~lVsQEP~LF~-~TIrENI~YG~-~~------vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQ 1133 (1228)
T KOG0055|consen 1062 LRKQIGLVSQEPVLFN-GTIRENIAYGS-EE------VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQ 1133 (1228)
T ss_pred HHHhcceeccCchhhc-ccHHHHHhccC-CC------CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHH
Confidence 467999999999995 59999999971 11 13455677777766655544444333 244679999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||++||+||||||.||+||+++.+.|-+.|.+.. +|+|.|++.|..+ ..+.||.|+|+++|+|++.|+-++
T Consensus 1134 RIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1134 RIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHDE 1210 (1228)
T ss_pred HHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHHH
Confidence 9999999999999999999999999999999999999976 5788888899985 467899999999999999999888
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+++
T Consensus 1211 L~~ 1213 (1228)
T KOG0055|consen 1211 LLA 1213 (1228)
T ss_pred HHh
Confidence 775
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=344.37 Aligned_cols=200 Identities=26% Similarity=0.403 Sum_probs=169.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||+++|+++ .+++|+|+|++++|||.+||+||||||||||+|+|+|+++|++ |+|.+||.+....
T Consensus 320 ~i~~~~v~f~y~~~---~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~I~~~g~~i~~~~~~~ 393 (529)
T TIGR02857 320 SLEFSGLSVAYPGR---RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE---GSIAVNGVPLADADADS 393 (529)
T ss_pred eEEEEEEEEECCCC---CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEehhhCCHHH
Confidence 69999999999632 2469999999999999999999999999999999999999975 9999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
++.++||+|++.+|+ .|++||+.++. +. ..++++.++++..++.+..++.+.|.+ ....|||||||
T Consensus 394 lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~~---~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~q 465 (529)
T TIGR02857 394 WRDQIAWVPQHPFLFA-GTIAENIRLAR----PD---ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQ 465 (529)
T ss_pred HHhheEEEcCCCcccC-cCHHHHHhccC----CC---CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHH
Confidence 357999999999986 59999997641 11 134678899999999887666543322 34679999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (641)
|++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|+++|++. . .+.||+|++|
T Consensus 466 ri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~-~~~~d~i~~l 529 (529)
T TIGR02857 466 RLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA-L-AERADRIVVL 529 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-H-HHhCCEEEeC
Confidence 9999999999999999999999999999999999999985 5789999999974 3 4679999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=341.62 Aligned_cols=213 Identities=19% Similarity=0.237 Sum_probs=174.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..++++|+++.. +.+|+|+|+.+++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++....
T Consensus 249 ~~i~~~~l~~~~-------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 249 VILEVRNLTSLR-------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSA---GTITLHGKKINNHNAN 318 (491)
T ss_pred cEEEEeCccccc-------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCc---cEEEECCEECCCCCHH
Confidence 368999998752 259999999999999999999999999999999999999875 9999999875321
Q ss_pred ---CceEEEEcCCC---ccCCCCCHHHHHHHHHH---hcC-CC-ccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCC
Q 006548 181 ---YGSYGFVERET---TLIGSLTVREYLYYSAL---LQL-PG-FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGL 248 (641)
Q Consensus 181 ---~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~---~~~-~~-~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~L 248 (641)
.+.++|++|+. .+++.+|+.+|..+... ... .. .....++.++++++.+++. +..++. +.+|
T Consensus 319 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~L 392 (491)
T PRK10982 319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ------IGSL 392 (491)
T ss_pred HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc------cccC
Confidence 23489999985 46888988877432210 010 10 1112345678899999995 455654 4599
Q ss_pred CHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 249 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
||||||||+|||+|+.+|+||||||||+|||+.++..+++.|++++++|.|||+++|+. +++.++||++++|++|+++.
T Consensus 393 SgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM-PELLGITDRILVMSNGLVAG 471 (491)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCCh-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999988899999988887 57889999999999999998
Q ss_pred EeChh
Q 006548 329 FGETL 333 (641)
Q Consensus 329 ~G~~~ 333 (641)
.++++
T Consensus 472 ~~~~~ 476 (491)
T PRK10982 472 IVDTK 476 (491)
T ss_pred EEccc
Confidence 77653
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=376.80 Aligned_cols=215 Identities=20% Similarity=0.276 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||+++|++ ..+.+|+|+|++++|||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1237 ~I~f~nVsf~Y~~---~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~---G~I~IDG~dI~~i~l~~ 1310 (1622)
T PLN03130 1237 SIKFEDVVLRYRP---ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER---GRILIDGCDISKFGLMD 1310 (1622)
T ss_pred cEEEEEEEEEeCC---CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCC---ceEEECCEecccCCHHH
Confidence 6999999999953 23469999999999999999999999999999999999999975 999999998643
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++++++|||++.+|.. |++|||.+.. ...++.+.++++..++.+..++++.|.+ ....|||||||
T Consensus 1311 LR~~IsiVpQdp~LF~G-TIreNLd~~~--------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQ 1381 (1622)
T PLN03130 1311 LRKVLGIIPQAPVLFSG-TVRFNLDPFN--------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQ 1381 (1622)
T ss_pred HHhccEEECCCCccccc-cHHHHhCcCC--------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHH
Confidence 23679999999999964 9999996421 1245678999999999877766553332 23479999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|+|+++|+.. .+ ..||||++|++|++++.|++++
T Consensus 1382 rlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~-tI-~~~DrIlVLd~G~IvE~Gt~~e 1458 (1622)
T PLN03130 1382 LLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN-TI-IDCDRILVLDAGRVVEFDTPEN 1458 (1622)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999975 4799999999885 34 4599999999999999999999
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+++
T Consensus 1459 Ll~ 1461 (1622)
T PLN03130 1459 LLS 1461 (1622)
T ss_pred HHh
Confidence 874
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=340.91 Aligned_cols=214 Identities=22% Similarity=0.338 Sum_probs=171.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++|+++.|+ ++.+|+|+|+.+++||+++|+||||||||||+|+|+|+.++. .+|+|.++|++...
T Consensus 259 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 259 PRIVLNNGVVSYN-----DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSGETI 331 (490)
T ss_pred ceEEEeceEEEEC-----CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCCCCH
Confidence 4699999999984 346999999999999999999999999999999999987651 14999999975321
Q ss_pred --CCceEEEEcCCCccCCC--CCHHHHHHHHHHh--cCCC-ccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHH
Q 006548 180 --PYGSYGFVERETTLIGS--LTVREYLYYSALL--QLPG-FFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~--lTV~E~l~~~~~~--~~~~-~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGG 251 (641)
.++.++|++|++.++.. .|+++++.++... .... .....+++++++++.++|.+ ..++.+ ..||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG 405 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPF------HSLSWG 405 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCch------hhCCHH
Confidence 12469999998765433 5777776543211 1101 11123456889999999986 777654 499999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEEeCChHHHHh-cCCEEEEEeCCeEEEE
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTINQSSTEVFG-LFDRICLLSNGNTLFF 329 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~t~h~~~~~i~~-~~D~v~vL~~G~iv~~ 329 (641)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++| .|||+++|+. +++.+ +||++++|++|++++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999999999998775 4689888887 46766 5999999999999876
Q ss_pred eC
Q 006548 330 GE 331 (641)
Q Consensus 330 G~ 331 (641)
-.
T Consensus 485 ~~ 486 (490)
T PRK10938 485 VQ 486 (490)
T ss_pred ec
Confidence 43
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=376.60 Aligned_cols=215 Identities=19% Similarity=0.260 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||+++|+. ..+.+|+|+|++++|||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1234 ~I~f~nVsf~Y~~---~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~---G~I~IdG~di~~i~~~~ 1307 (1495)
T PLN03232 1234 SIKFEDVHLRYRP---GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK---GRIMIDDCDVAKFGLTD 1307 (1495)
T ss_pred cEEEEEEEEEECC---CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---ceEEECCEEhhhCCHHH
Confidence 5999999999952 23579999999999999999999999999999999999999975 999999998642
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.+++++||||++.+|+ .|++|||.+. . ...++++.++++..++.+..++.+.|.+ ....|||||||
T Consensus 1308 lR~~i~iVpQdp~LF~-gTIr~NL~~~------~--~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1378 (1495)
T PLN03232 1308 LRRVLSIIPQSPVLFS-GTVRFNIDPF------S--EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQ 1378 (1495)
T ss_pred HHhhcEEECCCCeeeC-ccHHHHcCCC------C--CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHH
Confidence 2467999999999996 4999999642 1 1245678899999999887666543322 23579999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|+|+++|+.. .+ ..||+|++|++|++++.|++++
T Consensus 1379 rlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~-ti-~~~DrIlVL~~G~ivE~Gt~~e 1455 (1495)
T PLN03232 1379 LLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN-TI-IDCDKILVLSSGQVLEYDSPQE 1455 (1495)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999874 4799999999984 44 4599999999999999999998
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+++
T Consensus 1456 Ll~ 1458 (1495)
T PLN03232 1456 LLS 1458 (1495)
T ss_pred HHh
Confidence 764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=340.49 Aligned_cols=209 Identities=24% Similarity=0.283 Sum_probs=169.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.++++||++.|.+ .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.+++. ..+
T Consensus 4 ~i~~~nls~~~~~----~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~---G~i~~~~~------~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP----KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFN---GEARPAPG------IKV 70 (552)
T ss_pred EEEEeeEEEecCC----CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CEE
Confidence 5899999999841 3469999999999999999999999999999999999998875 99999752 469
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHh-c------------CCCccch----------------------HHHHHHHHHHHc
Q 006548 185 GFVERETTLIGSLTVREYLYYSALL-Q------------LPGFFCQ----------------------RKNVVEDAIHAM 229 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~-~------------~~~~~~~----------------------~~~~v~~~l~~l 229 (641)
+|++|++.+++.+||+||+.++... + ......+ ...+++++++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 9999999999999999999875321 0 0000000 013455566666
Q ss_pred CCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChH
Q 006548 230 SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309 (641)
Q Consensus 230 gL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (641)
|+.. .++ .+..|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||+++|+. .
T Consensus 151 ~l~~-~~~------~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~-~ 219 (552)
T TIGR03719 151 RCPP-WDA------DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR-Y 219 (552)
T ss_pred CCCc-ccC------chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH-H
Confidence 6642 344 44599999999999999999999999999999999999999999999876 35888887776 5
Q ss_pred HHHhcCCEEEEEeCCeEE-EEeChhHHHH
Q 006548 310 EVFGLFDRICLLSNGNTL-FFGETLACLQ 337 (641)
Q Consensus 310 ~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 337 (641)
.+..+||++++|++|+++ +.|+.++..+
T Consensus 220 ~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 220 FLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred HHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 788999999999999976 7788776543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=339.49 Aligned_cols=203 Identities=18% Similarity=0.183 Sum_probs=169.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|++ .+++|+|+|+++++||.+||+||||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 322 ~i~~~~v~f~y~~----~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~ 394 (547)
T PRK10522 322 TLELRNVTFAYQD----NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQS---GEILLDGKPVTAEQPED 394 (547)
T ss_pred eEEEEEEEEEeCC----CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEECCCCCHHH
Confidence 6999999999952 2469999999999999999999999999999999999999875 999999998542
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
.++.++||+|++.+|+ .|++||- + ...++.++++++.+++.+..+..-+ ......||||||||++||
T Consensus 395 ~~~~i~~v~q~~~lf~-~ti~~n~--------~---~~~~~~~~~~~~~~~l~~~~~~~~~-~~~G~~LSgGq~qRl~lA 461 (547)
T PRK10522 395 YRKLFSAVFTDFHLFD-QLLGPEG--------K---PANPALVEKWLERLKMAHKLELEDG-RISNLKLSKGQKKRLALL 461 (547)
T ss_pred HhhheEEEecChhHHH-Hhhcccc--------C---chHHHHHHHHHHHcCCchhhhcccc-CCCCCCCCHHHHHHHHHH
Confidence 1357999999998885 4788761 1 1244567889999999765543111 111358999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
|||+.+|++|+||||||+||+.++..+.+.|.+.. +.++|+|+++|++ +..+.||+|++|++|++++.
T Consensus 462 Ral~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 462 LALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999998765 3589999999997 34678999999999999876
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=369.91 Aligned_cols=215 Identities=19% Similarity=0.219 Sum_probs=183.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||+++|++ ..+.+|+|||++|+|||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1308 ~I~f~nVsf~Y~~---~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~---G~I~IDG~di~~i~l~~ 1381 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE---GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCG---GEIRVNGREIGAYGLRE 1381 (1560)
T ss_pred eEEEEEEEEEeCC---CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEcccCCHHH
Confidence 5999999999953 22469999999999999999999999999999999999999875 999999998642
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++.++||||++.+|. .||+|||... .. ..++.+.++++..++.+....+..|.+ ....|||||||
T Consensus 1382 LR~~I~iVpQdp~LF~-gTIreNIdp~------~~--~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQ 1452 (1560)
T PTZ00243 1382 LRRQFSMIPQDPVLFD-GTVRQNVDPF------LE--ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQ 1452 (1560)
T ss_pred HHhcceEECCCCcccc-ccHHHHhCcc------cC--CCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHH
Confidence 2367999999999996 4999999431 11 245679999999999887655443322 23579999999
Q ss_pred HHHHHHHHHhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 255 RVRIARELVMR-PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 255 Rv~IA~aL~~~-P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
|++|||||+++ |+|||||||||+||+.+...|.+.|++.. +++|+|+++|+.. ....||+|++|++|++++.|+++
T Consensus 1453 rLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1453 LMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSPR 1529 (1560)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCHH
Confidence 99999999996 89999999999999999999999999864 4789999999874 45679999999999999999999
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
++++
T Consensus 1530 eLl~ 1533 (1560)
T PTZ00243 1530 ELVM 1533 (1560)
T ss_pred HHHh
Confidence 8864
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=286.02 Aligned_cols=217 Identities=22% Similarity=0.327 Sum_probs=187.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EeCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEM--- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G-~~~~~--- 179 (641)
..+.++||++++. +.++|+|+||.+.+||+-+|+|||||||||+|++|+|..+|+. |+|+++| .++..
T Consensus 4 ~iL~~~~vsVsF~-----GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~---G~v~f~g~~dl~~~~e 75 (249)
T COG4674 4 IILYLDGVSVSFG-----GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQE---GEVLFDGDTDLTKLPE 75 (249)
T ss_pred ceEEEeceEEEEc-----ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCc---ceEEEcCchhhccCCH
Confidence 4689999999994 5679999999999999999999999999999999999999875 9999999 44321
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC-------ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCC
Q 006548 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPG-------FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249 (641)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-------~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LS 249 (641)
.+..||--+|.+..|..+||+|||..+.+...+- ...+.+.+++++|...||.+.+++..+ .||
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~------~LS 149 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA------LLS 149 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh------hhc
Confidence 1245888899999999999999999875432211 111245689999999999999998776 899
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 250 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
.||||++.|++-|+++|++|+||||++|+--....+.-++|+.++. +++|+++ .|++..+.+++|+|.+|++|.+...
T Consensus 150 HGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVV-EHDM~Fvr~~A~~VTVlh~G~VL~E 227 (249)
T COG4674 150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVV-EHDMGFVREIADKVTVLHEGSVLAE 227 (249)
T ss_pred cchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEE-eccHHHHHHhhheeEEEeccceeec
Confidence 9999999999999999999999999999999999999999999985 4566664 5566899999999999999999999
Q ss_pred eChhHHH
Q 006548 330 GETLACL 336 (641)
Q Consensus 330 G~~~~~~ 336 (641)
|+.+++.
T Consensus 228 Gsld~v~ 234 (249)
T COG4674 228 GSLDEVQ 234 (249)
T ss_pred ccHHHhh
Confidence 9988764
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=370.39 Aligned_cols=215 Identities=20% Similarity=0.251 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||+++|+.. .+.+|+|+|++++|||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1284 ~I~f~nVsf~Y~~~---~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~---G~I~IdG~dI~~i~~~~ 1357 (1522)
T TIGR00957 1284 RVEFRNYCLRYRED---LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE---GEIIIDGLNIAKIGLHD 1357 (1522)
T ss_pred cEEEEEEEEEeCCC---CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCC---CeEEECCEEccccCHHH
Confidence 69999999999632 2469999999999999999999999999999999999999875 999999998643
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++++++|||++.+|.. |++|||... .. ..++.+.++++..++.+..++.++|.+ ....|||||||
T Consensus 1358 LR~~i~iVpQdp~LF~g-TIr~NLdp~------~~--~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1428 (1522)
T TIGR00957 1358 LRFKITIIPQDPVLFSG-SLRMNLDPF------SQ--YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQ 1428 (1522)
T ss_pred HHhcCeEECCCCcccCc-cHHHHcCcc------cC--CCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHH
Confidence 24579999999999975 999999521 11 245668899999999887766544332 23569999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|+.. . ...||||++|++|++++.|++++
T Consensus 1429 rl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~-t-i~~~DrIlVld~G~IvE~G~~~e 1505 (1522)
T TIGR00957 1429 LVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN-T-IMDYTRVIVLDKGEVAEFGAPSN 1505 (1522)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-H-HHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999864 4789999999984 3 45699999999999999999998
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+++
T Consensus 1506 Ll~ 1508 (1522)
T TIGR00957 1506 LLQ 1508 (1522)
T ss_pred HHh
Confidence 865
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=335.54 Aligned_cols=204 Identities=20% Similarity=0.240 Sum_probs=169.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..+.++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.+++. ..
T Consensus 323 ~~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~---G~i~~~~~------~~ 388 (556)
T PRK11819 323 KVIEAENLSKSFG-----DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDS---GTIKIGET------VK 388 (556)
T ss_pred eEEEEEeEEEEEC-----CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCc------eE
Confidence 4699999999984 3469999999999999999999999999999999999999875 99999542 25
Q ss_pred EEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 184 YGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 184 ~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+||++|+. .+++.+||.||+.+....... .......+++++.+++.+ ..++.+ .+|||||||||+|||+
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG~~qrv~la~a 459 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKV---GNREIPSRAYVGRFNFKGGDQQKKV------GVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhcccccc---cccHHHHHHHHHhCCCChhHhcCch------hhCCHHHHHHHHHHHH
Confidence 99999996 788899999999876422111 112234567899999964 556654 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC-CeEE-EEeChhH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTL-FFGETLA 334 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~-G~iv-~~G~~~~ 334 (641)
|+.+|++|||||||+|||+.++..+.+.|+++. | |||+++|++ .++.++||++++|++ |++. +.|+.++
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 999999999999999999999999999999873 4 788877776 588899999999985 7876 4565543
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=335.83 Aligned_cols=198 Identities=24% Similarity=0.273 Sum_probs=171.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..++++|+++.|.+ ..|+++|+.+++||+++|+||||||||||+|+|+|+++|++ |+|.++ ..
T Consensus 339 ~~l~~~~ls~~~~~------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~---G~I~~~--------~~ 401 (590)
T PRK13409 339 TLVEYPDLTKKLGD------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDE---GEVDPE--------LK 401 (590)
T ss_pred eEEEEcceEEEECC------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEEe--------ee
Confidence 46899999998842 35999999999999999999999999999999999999875 999986 25
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~ 263 (641)
++|++|+..+.+.+||+|++.+.... . .....++++++.++|.+..++.+ ..|||||||||+|||+|+
T Consensus 402 i~y~~Q~~~~~~~~tv~e~l~~~~~~-~-----~~~~~~~~~L~~l~l~~~~~~~~------~~LSGGe~QRvaiAraL~ 469 (590)
T PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDD-L-----GSSYYKSEIIKPLQLERLLDKNV------KDLSGGELQRVAIAACLS 469 (590)
T ss_pred EEEecccccCCCCCcHHHHHHHHhhh-c-----ChHHHHHHHHHHCCCHHHHhCCc------ccCCHHHHHHHHHHHHHh
Confidence 89999998888899999999875211 1 11235788999999998887755 499999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 264 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
.+|++|||||||+|||+.++..+.+.|++++++ |.|+|+++|+. .++..+|||+++|+ |++...|..
T Consensus 470 ~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 470 RDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-Ccceeeeec
Confidence 999999999999999999999999999999864 89999988886 57889999999996 588777763
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=334.46 Aligned_cols=203 Identities=21% Similarity=0.251 Sum_probs=168.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..++++|+++.|. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.+++. ..
T Consensus 321 ~~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---G~i~~~~~------~~ 386 (552)
T TIGR03719 321 KVIEAENLSKGFG-----DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDS---GTIKIGET------VK 386 (552)
T ss_pred eEEEEeeEEEEEC-----CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---eEEEECCc------eE
Confidence 3689999999984 3469999999999999999999999999999999999998875 99999542 25
Q ss_pred EEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 184 YGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 184 ~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
++|++|+. .+++.+||.||+.++...... .....+++++++.+|+.+ ..++.+ ..|||||||||+|||+
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgGe~qrv~la~a 457 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDIIQL---GKREVPSRAYVGRFNFKGSDQQKKV------GQLSGGERNRVHLAKT 457 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhcccccc---CcchHHHHHHHHhCCCChhHhcCch------hhCCHHHHHHHHHHHH
Confidence 99999986 478889999999876422111 112234567899999964 556654 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC-CeEE-EEeChh
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTL-FFGETL 333 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~-G~iv-~~G~~~ 333 (641)
|+.+|++|||||||+|||+.++..+.+.|+++. + |||+++|++ ..+.++||++++|++ |+++ +.|+.+
T Consensus 458 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~ 527 (552)
T TIGR03719 458 LKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNYS 527 (552)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCHH
Confidence 999999999999999999999999999999983 3 788877776 578899999999986 5776 445543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=366.43 Aligned_cols=212 Identities=20% Similarity=0.313 Sum_probs=174.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEeCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN-GAKSEM---- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~-G~~~~~---- 179 (641)
.++++||++.|+.+ ..+++|+|+|+++++||++||+||||||||||+++|+|+++|++ |+|+++ |.+...
T Consensus 382 ~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~i~~g~~i~~~~~~ 456 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR--KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTE---GDIIINDSHNLKDINLK 456 (1466)
T ss_pred cEEEEEEEEEcCCC--CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCC---CeEEEeCCcchhhCCHH
Confidence 59999999999632 23469999999999999999999999999999999999999975 999995 565421
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcC----------C------------------------------------
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQL----------P------------------------------------ 212 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~----------~------------------------------------ 212 (641)
.++.++||+|++.+|+ .||+||+.++..... +
T Consensus 457 ~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 535 (1466)
T PTZ00265 457 WWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELI 535 (1466)
T ss_pred HHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhh
Confidence 1356999999999997 599999988631000 0
Q ss_pred ----CccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHH
Q 006548 213 ----GFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (641)
Q Consensus 213 ----~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~ 283 (641)
......++.+.++++.+++.+..++++.|. .....||||||||++|||||+.+|+|||||||||+||+.++
T Consensus 536 ~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se 615 (1466)
T PTZ00265 536 EMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSE 615 (1466)
T ss_pred hcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 000113456888999999988766554332 34678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 006548 284 LLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (641)
Q Consensus 284 ~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (641)
..+.+.|+++++ +|+|+|+++|++. .+ +.||+|++|++|
T Consensus 616 ~~i~~~L~~~~~~~g~TvIiIsHrls-~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 616 YLVQKTINNLKGNENRITIIIAHRLS-TI-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCHH-HH-HhCCEEEEEeCC
Confidence 999999999975 5899999999875 44 789999999986
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=303.76 Aligned_cols=198 Identities=21% Similarity=0.218 Sum_probs=162.4
Q ss_pred eEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCC
Q 006548 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSE 178 (641)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~-----------~~G~~~~ 178 (641)
+|+++|+. .+.+|+|+| .+++||+++|+||||||||||||+|+|+++|+. |+|. ++|.+..
T Consensus 5 ~~~~~y~~----~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~---G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 5 EPVHRYGP----NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNL---GKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred CcceeecC----cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEeeccccchhhhhccCchhh
Confidence 56777732 235999999 599999999999999999999999999999875 9996 7776542
Q ss_pred C-----C--CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHH
Q 006548 179 M-----P--YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 179 ~-----~--~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG 251 (641)
. . ...++|++|+..+++. ++.+++.+.. . . ....+.+.++++.+|+.+..++.+ ..||||
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--~--~--~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G 143 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL--K--K--KDERGKLDELVDQLELRHVLDRNI------DQLSGG 143 (255)
T ss_pred hhhHHhhhcccceeeecchhccCch-HHHHHHHHHh--c--h--hHHHHHHHHHHHHcCCchhhcCCh------hhCCHH
Confidence 1 1 1237899998888774 8888886632 1 1 123456889999999988777654 499999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++++|||+++|++ ..+.++||+|++|+ |+++++|
T Consensus 144 ~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 144 ELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL-AVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999999999999999999987789999988886 57888999999994 6666544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=295.66 Aligned_cols=207 Identities=26% Similarity=0.335 Sum_probs=173.7
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----ceEEEEc-CCCccCCC
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY----GSYGFVE-RETTLIGS 196 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~yv~-Q~~~l~~~ 196 (641)
...+++|+||.+.+|++++++|||||||||+||+|+|++.|++ |.|.++|......+ +++++|+ |..++...
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~---G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd 112 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS---GKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD 112 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCC---CeEEecCcCcchhHHHHHHHHHHHhhhhheeeee
Confidence 3469999999999999999999999999999999999999976 99999998643321 3466664 55666666
Q ss_pred CCHHHHHHHHHHhc-CCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCC
Q 006548 197 LTVREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275 (641)
Q Consensus 197 lTV~E~l~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPt 275 (641)
+.+.|.+.....+. .|. .+-+++.+...+.++|++..+.. +|.||-|||.|+.||.+|+++|+||||||||
T Consensus 113 lp~~ds~~v~~~Iy~Ipd--~~F~~r~~~l~eiLdl~~~lk~~------vr~LSlGqRmraeLaaaLLh~p~VLfLDEpT 184 (325)
T COG4586 113 LPALDSLEVLKLIYEIPD--DEFAERLDFLTEILDLEGFLKWP------VRKLSLGQRMRAELAAALLHPPKVLFLDEPT 184 (325)
T ss_pred chhhhhHHHHHHHHhCCH--HHHHHHHHHHHHHhcchhhhhhh------hhhccchHHHHHHHHHHhcCCCcEEEecCCc
Confidence 77777775443322 222 13456788899999999888764 4699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHhh
Q 006548 276 YHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 340 (641)
Q Consensus 276 sgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~ 340 (641)
=|||..++..+.+.|++.. +++.||+.++|.. +.+.++||||++|+.|+++|+|+.+++.+.|.
T Consensus 185 vgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 185 VGLDVNAQANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred cCcchhHHHHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 9999999999999999998 4589999988876 58999999999999999999999998876553
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=361.46 Aligned_cols=214 Identities=19% Similarity=0.244 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||+++|+. ..+.+|+|+|++|+|||.+||+|+||||||||+++|+|+++ . +|+|.+||.++..
T Consensus 1217 ~I~f~nVs~~Y~~---~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~---~G~I~IdG~di~~i~~~~ 1289 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE---AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T---EGEIQIDGVSWNSVTLQT 1289 (1490)
T ss_pred eEEEEEEEEEeCC---CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEcccCCHHH
Confidence 6999999999963 23579999999999999999999999999999999999986 3 4999999998642
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.+++++||||++.+|+. ||+|||... . ...++.+.++++.++|.+...++++|.+ ....|||||||
T Consensus 1290 lR~~is~IpQdp~LF~G-TIR~NLdp~------~--~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQ 1360 (1490)
T TIGR01271 1290 WRKAFGVIPQKVFIFSG-TFRKNLDPY------E--QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQ 1360 (1490)
T ss_pred HHhceEEEeCCCccCcc-CHHHHhCcc------c--CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHH
Confidence 23579999999999974 999999431 1 1245678999999999877665543322 23469999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|+|||||||||+||..+...|.+.|++.. +++|||+++|++. . ...||+|++|++|++++.|++++
T Consensus 1361 rL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~-t-i~~~DrIlvL~~G~ivE~g~p~~ 1437 (1490)
T TIGR01271 1361 LMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE-A-LLECQQFLVIEGSSVKQYDSIQK 1437 (1490)
T ss_pred HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-H-HHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999865 4799999999874 3 45699999999999999999998
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+++
T Consensus 1438 Ll~ 1440 (1490)
T TIGR01271 1438 LLN 1440 (1490)
T ss_pred HHc
Confidence 864
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=333.05 Aligned_cols=203 Identities=21% Similarity=0.306 Sum_probs=170.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..+.++||++.|. .+.+|+|+|+.+.+|++++|+||||||||||||+|+|+.+|++ |+|.+++. ..
T Consensus 311 ~~l~~~~l~~~y~-----~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~---G~i~~~~~------~~ 376 (638)
T PRK10636 311 PLLKMEKVSAGYG-----DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVS---GEIGLAKG------IK 376 (638)
T ss_pred ceEEEEeeEEEeC-----CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECCC------EE
Confidence 4689999999984 3569999999999999999999999999999999999999875 99999742 36
Q ss_pred EEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 184 YGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 184 ~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
+||++|+. .+.+..|+.+++.. .. + ......+.++++.+++. +..++.++ .|||||||||+||+
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~---~~-~---~~~~~~~~~~L~~~~l~~~~~~~~~~------~LSgGekqRl~La~ 443 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLAR---LA-P---QELEQKLRDYLGGFGFQGDKVTEETR------RFSGGEKARLVLAL 443 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHH---hC-c---hhhHHHHHHHHHHcCCChhHhcCchh------hCCHHHHHHHHHHH
Confidence 89999974 35566778777631 11 1 12345688999999996 46676554 99999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeChhHHHH
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 337 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 337 (641)
+|+.+|++|||||||+|||+.++..+.+.|+++ .| |||+++|+. ..+..+||++++|++|+++ +.|+.++..+
T Consensus 444 ~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 444 IVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999999999999999999999999999987 34 888888776 5888999999999999997 8898877643
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=275.50 Aligned_cols=223 Identities=23% Similarity=0.341 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEecc----cccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 006548 105 SVVWKDLTVTIKGK----RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~----~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~- 179 (641)
.++++||++++... ++....+++.|||++++|+.+||+|.||||||||.|+|+|.++|++ |+|++||++...
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTs---G~il~n~~~L~~~ 80 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GEILINDHPLHFG 80 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCC---ceEEECCcccccc
Confidence 46888999888643 2234579999999999999999999999999999999999999986 999999987532
Q ss_pred ----CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHH
Q 006548 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGe 252 (641)
+.+.+-+++||+ .+.|.+.+.+.|..+.++...-....+.+++-+.|+.+||- +.++ -+++.||-||
T Consensus 81 Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan------~~~~~la~~Q 154 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHAN------YYPHMLAPGQ 154 (267)
T ss_pred chHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccc------cchhhcCchh
Confidence 235688888886 57889999998888776654333334778899999999984 4444 3667999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||++||||+.+|+|+|.||...+||...+.++.++.-+|.++ |.+-|.++.|. ..+.+++|+|+||++|++|+.|.
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecCC
Confidence 99999999999999999999999999999999999999999855 99999976665 68899999999999999999999
Q ss_pred hhHHHH
Q 006548 332 TLACLQ 337 (641)
Q Consensus 332 ~~~~~~ 337 (641)
+.+++.
T Consensus 234 t~~v~a 239 (267)
T COG4167 234 TADVLA 239 (267)
T ss_pred hhhhhc
Confidence 988764
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=311.57 Aligned_cols=216 Identities=24% Similarity=0.345 Sum_probs=177.2
Q ss_pred CCceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--
Q 006548 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-- 179 (641)
.+..++++|+++.|. .+|++|+||||++.||+.+||+||||+||||++++|......++ |.|.+||+++..
T Consensus 534 ~~G~i~fsnvtF~Y~----p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~s---GsI~iDgqdIrnvt 606 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYD----PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNS---GSITIDGQDIRNVT 606 (790)
T ss_pred cCCeEEEEEeEEecC----CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccC---ceEEEcCchHHHHH
Confidence 345799999999996 46789999999999999999999999999999999999988764 999999998642
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHH-------cCCchHHhhhhcCCCCCCCCC
Q 006548 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA-------MSLSDYANKLIGGHCYMKGLP 249 (641)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~-------lgL~~~~~~~ig~~~~~~~LS 249 (641)
.++.||.||||..+|. -|+..|+.|+. |. ..++.+.++.+. ++..+-.++.+| ++.-.||
T Consensus 607 ~~SLRs~IGVVPQDtvLFN-dTI~yNIryak----~~---AsneevyaAAkAA~IHdrIl~fPegY~t~VG--ERGLkLS 676 (790)
T KOG0056|consen 607 QSSLRSSIGVVPQDTVLFN-DTILYNIRYAK----PS---ASNEEVYAAAKAAQIHDRILQFPEGYNTRVG--ERGLKLS 676 (790)
T ss_pred HHHHHHhcCcccCcceeec-ceeeeheeecC----CC---CChHHHHHHHHHhhHHHHHhcCchhhhhhhh--hcccccC
Confidence 2357999999999985 49999998752 22 122334444333 445556677776 3445699
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 250 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
|||||||+|||+++.+|.+++|||.||+||..+.+.+...|.++++.. |.|++.|..+. + -.+|.|+++++|+|++.
T Consensus 677 GGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~R-TtIVvAHRLST-i-vnAD~ILvi~~G~IvEr 753 (790)
T KOG0056|consen 677 GGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANR-TTIVVAHRLST-I-VNADLILVISNGRIVER 753 (790)
T ss_pred CcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCC-ceEEEeeeehh-e-ecccEEEEEeCCeEeec
Confidence 999999999999999999999999999999999999999999999754 44555788763 3 45999999999999999
Q ss_pred eChhHHHH
Q 006548 330 GETLACLQ 337 (641)
Q Consensus 330 G~~~~~~~ 337 (641)
|.-+|++.
T Consensus 754 G~HeeLl~ 761 (790)
T KOG0056|consen 754 GRHEELLK 761 (790)
T ss_pred CcHHHHHh
Confidence 99888765
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=330.69 Aligned_cols=204 Identities=22% Similarity=0.277 Sum_probs=169.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..+.++||++.|. .+.+|+|+|+.+.+|++++|+|||||||||||++|+|+++|++ |+|.+ |.+ ..
T Consensus 318 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~---G~i~~-~~~-----~~ 383 (635)
T PRK11147 318 IVFEMENVNYQID-----GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADS---GRIHC-GTK-----LE 383 (635)
T ss_pred ceEEEeeeEEEEC-----CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEE-CCC-----cE
Confidence 4689999999984 3469999999999999999999999999999999999998875 99998 432 25
Q ss_pred EEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 184 YGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 184 ~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+||++|+. .+++.+||.||+.+.... .. .......+.++++.+++. +..++.++ .|||||||||+||++
T Consensus 384 i~y~~q~~~~l~~~~tv~e~l~~~~~~-~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~------~LSgGekqRl~la~a 454 (635)
T PRK11147 384 VAYFDQHRAELDPEKTVMDNLAEGKQE-VM--VNGRPRHVLGYLQDFLFHPKRAMTPVK------ALSGGERNRLLLARL 454 (635)
T ss_pred EEEEeCcccccCCCCCHHHHHHhhccc-cc--ccchHHHHHHHHHhcCCCHHHHhChhh------hCCHHHHHHHHHHHH
Confidence 99999975 688999999999764321 10 011234578899999995 56677554 999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe-CCeEEE-EeChhH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS-NGNTLF-FGETLA 334 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~-~G~iv~-~G~~~~ 334 (641)
|+.+|++|||||||+|||+.++..+.+.|+++ +.|||+++|+. ..+..+||++++|+ +|++.. .|+-++
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 99999999999999999999999999999886 45888888876 57889999999998 899865 455443
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=270.20 Aligned_cols=144 Identities=28% Similarity=0.392 Sum_probs=130.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 185 (641)
++++|+++.+. ...+|+++|+.+++||+++|+||||||||||+++|+|+.+|.+ |+|.++|. ..++
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~~~------~~i~ 66 (144)
T cd03221 1 IELENLSKTYG-----GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDE---GIVTWGST------VKIG 66 (144)
T ss_pred CEEEEEEEEEC-----CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCc---eEEEECCe------EEEE
Confidence 36889999884 2369999999999999999999999999999999999999875 99999984 4688
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC
Q 006548 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (641)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (641)
|++| ||+||+||++|||||+.+
T Consensus 67 ~~~~----------------------------------------------------------lS~G~~~rv~laral~~~ 88 (144)
T cd03221 67 YFEQ----------------------------------------------------------LSGGEKMRLALAKLLLEN 88 (144)
T ss_pred EEcc----------------------------------------------------------CCHHHHHHHHHHHHHhcC
Confidence 8888 899999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 266 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
|++++|||||+|||+.++..+.+.|+++ ++|+++++|++ +++.++||++++|++|+
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999987 46899988876 57888999999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=329.49 Aligned_cols=206 Identities=22% Similarity=0.347 Sum_probs=167.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..++++||++.|++ .+.+|+|+|+.+++|++++|+||||||||||||+|+|+++|++ |+|.+++. ..
T Consensus 507 ~~L~~~~ls~~y~~----~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~---G~I~~~~~------~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPG----GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSS---GTVFRSAK------VR 573 (718)
T ss_pred ceEEEEeeEEEeCC----CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---ceEEECCc------ee
Confidence 46899999999842 2469999999999999999999999999999999999999875 99998752 46
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
++|++|+. ...+++.++.........+. ...++++++++.+|+.+ ..++. +..|||||||||+|||+|
T Consensus 574 igyv~Q~~--~~~l~~~~~~~~~~~~~~~~---~~~~~i~~~L~~~gl~~~~~~~~------~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 574 MAVFSQHH--VDGLDLSSNPLLYMMRCFPG---VPEQKLRAHLGSFGVTGNLALQP------MYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEEeccc--cccCCcchhHHHHHHHhcCC---CCHHHHHHHHHHCCCChHHhcCC------ccccCHHHHHHHHHHHHH
Confidence 99999975 24456666643321111111 12456889999999974 56654 459999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeChhHHHH
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 337 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 337 (641)
+.+|++|||||||+|||+.++..+++.|++. +| |||+++|++ ..+..+||++++|++|+++ +.|+.++..+
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 9999999999999999999999998888765 34 899988876 5788999999999999998 7787765443
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=331.73 Aligned_cols=199 Identities=18% Similarity=0.249 Sum_probs=163.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.++++||++.+++ ++.+|+|+|+++++||+++|+||||||||||+++|+|++++++ |+|.+++ ++.+
T Consensus 451 ~i~~~nv~~~~~~----~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~---G~i~~~~------~~~i 517 (659)
T TIGR00954 451 GIKFENIPLVTPN----GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYG---GRLTKPA------KGKL 517 (659)
T ss_pred eEEEEeeEEECCC----CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEeecC------CCcE
Confidence 5899999998742 3469999999999999999999999999999999999998875 9998864 3569
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC---CCCCCCCCHHHHHHHHHHHH
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG---HCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~---~~~~~~LSGGerqRv~IA~a 261 (641)
+||+|++.+++. |++||+.++............+++++++++.+++.+..++..|- ......||||||||++||||
T Consensus 518 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa 596 (659)
T TIGR00954 518 FYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL 596 (659)
T ss_pred EEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence 999999988876 99999987532110000011345688999999999887763320 11346899999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
|+.+|++|||||||+|||+.++..+.+.+++ .|+|+|+++|++. . .+.||++++|+
T Consensus 597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~-~-~~~~d~il~l~ 652 (659)
T TIGR00954 597 FYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS-L-WKYHEYLLYMD 652 (659)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH-H-HHhCCEEEEEe
Confidence 9999999999999999999999999998876 3889999999975 3 57899999997
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=278.16 Aligned_cols=215 Identities=20% Similarity=0.279 Sum_probs=175.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
+.+.|+.+.+.......+++|+++|+++..|+++-|+|.||||||||+++|+|.+++++ |+|.++|.++...
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~---G~I~Idg~dVtk~~~~~R 78 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS---GQILIDGVDVTKKSVAKR 78 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCC---ceEEECceecccCCHHHH
Confidence 35667777775544556889999999999999999999999999999999999999986 9999999986432
Q ss_pred CceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCcc-----chHHHHHHHHHHHc--CCchHHhhhhcCCCCCCCCCHH
Q 006548 181 YGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFF-----CQRKNVVEDAIHAM--SLSDYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 181 ~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~-----~~~~~~v~~~l~~l--gL~~~~~~~ig~~~~~~~LSGG 251 (641)
...++-|+|++ ..++.+|++||+..+......... ..+++...+-++.+ ||++..++.+| -||||
T Consensus 79 A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig------lLSGG 152 (263)
T COG1101 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG------LLSGG 152 (263)
T ss_pred hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh------hccch
Confidence 12467789986 578999999999887543211100 11333445556655 45777777776 89999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|||-++++.|-++.|+||+|||=|++|||.++..|++.-.++.++ +.|.++++|+. .++..+.+|.++|++|+||.+-
T Consensus 153 QRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm-~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 153 QRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM-EDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH-HHHHhhCCeEEEEeCCeEEEEc
Confidence 999999999999999999999999999999999999999998754 78999988886 5788999999999999999863
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=276.76 Aligned_cols=154 Identities=23% Similarity=0.255 Sum_probs=133.6
Q ss_pred EeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEc
Q 006548 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVE 188 (641)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~ 188 (641)
.||++.|. ++.+++++ +.+++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+ ++|++
T Consensus 4 ~~l~~~~~-----~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~-------i~~~~ 67 (177)
T cd03222 4 PDCVKRYG-----VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNG---DNDEWDGIT-------PVYKP 67 (177)
T ss_pred CCeEEEEC-----CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC---cEEEECCEE-------EEEEc
Confidence 57788773 34688884 8999999999999999999999999999999875 999999853 67877
Q ss_pred CCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcE
Q 006548 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHV 268 (641)
Q Consensus 189 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~i 268 (641)
|+.. ||||||||++|||+|+.+|++
T Consensus 68 q~~~-------------------------------------------------------LSgGq~qrv~laral~~~p~l 92 (177)
T cd03222 68 QYID-------------------------------------------------------LSGGELQRVAIAAALLRNATF 92 (177)
T ss_pred ccCC-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 7432 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE--eChhH
Q 006548 269 LFIDEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTINQSSTEVFGLFDRICLLSNGNTLFF--GETLA 334 (641)
Q Consensus 269 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~--G~~~~ 334 (641)
++|||||+|||+.++..+.+.|+++++++ .|+|+++|++ .++.++||++++|+++-.++. |.|..
T Consensus 93 llLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 160 (177)
T cd03222 93 YLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPKG 160 (177)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCcc
Confidence 99999999999999999999999998765 8999988886 578889999999998766654 55543
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=277.32 Aligned_cols=219 Identities=20% Similarity=0.223 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEecc-------------------cccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 006548 105 SVVWKDLTVTIKGK-------------------RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR 165 (641)
Q Consensus 105 ~l~~~~ls~~~~~~-------------------~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~ 165 (641)
.+.++||++.++.. +.....+|+||||++++||.+||+|+||||||||||+|+|.++|++
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~- 81 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS- 81 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC-
Confidence 46778888777521 1123579999999999999999999999999999999999999986
Q ss_pred ceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCC
Q 006548 166 MYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245 (641)
Q Consensus 166 ~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 245 (641)
|+|.++|+-.....- .-.+.|.+|.+||+.+-+.+. .-...+.+++++++++..+|.++.|.++
T Consensus 82 --G~v~v~G~v~~li~l-------g~Gf~pelTGreNi~l~~~~~-G~~~~ei~~~~~eIieFaELG~fi~~Pv------ 145 (249)
T COG1134 82 --GKVKVTGKVAPLIEL-------GAGFDPELTGRENIYLRGLIL-GLTRKEIDEKVDEIIEFAELGDFIDQPV------ 145 (249)
T ss_pred --ceEEEcceEehhhhc-------ccCCCcccchHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHHHHhhCch------
Confidence 999999974321111 123567899999998865542 1122346788999999999999999865
Q ss_pred CCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
+.+|-||+-|++.|.|...+|+|||+||-.+-.|+.-+++-.+.++++.++++|+|+++|++ ..+.++||++++|++|+
T Consensus 146 ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G~ 224 (249)
T COG1134 146 KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIKQYCDRAIWLEHGQ 224 (249)
T ss_pred hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhcCeeEEEeCCE
Confidence 59999999999999999999999999999999999999999999999988889999988887 58999999999999999
Q ss_pred EEEEeChhHHHHHhhh
Q 006548 326 TLFFGETLACLQHFSN 341 (641)
Q Consensus 326 iv~~G~~~~~~~~f~~ 341 (641)
+.+.|.++++.+++++
T Consensus 225 i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 225 IRMEGSPEEVIPAYEE 240 (249)
T ss_pred EEEcCCHHHHHHHHHH
Confidence 9999999999987654
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=276.51 Aligned_cols=160 Identities=19% Similarity=0.199 Sum_probs=131.9
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (641)
.+.+|+|+|+++++|++++|+||||||||||||+|.+ . +|+|.++|.........++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~---~G~v~~~~~~~~~~~~~~~~~~q------------ 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A---SGKARLISFLPKFSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c---CCcEEECCcccccccccEEEEhH------------
Confidence 4578999999999999999999999999999999964 2 39999988643222234677766
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEeCCCCCC
Q 006548 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMR--PHVLFIDEPLYHL 278 (641)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~--P~iLlLDEPtsgL 278 (641)
.++++.++|.+. .++ .++.||||||||++|||+|+.+ |++|||||||+||
T Consensus 68 ---------------------~~~l~~~~L~~~~~~~------~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~L 120 (176)
T cd03238 68 ---------------------LQFLIDVGLGYLTLGQ------KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGL 120 (176)
T ss_pred ---------------------HHHHHHcCCCccccCC------CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccC
Confidence 235677787643 444 4569999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 279 DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 279 D~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
|+.++..+.+.|++++++|+|||+++|++. ++ +.||++++|++|+....
T Consensus 121 D~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~~-~~~d~i~~l~~g~~~~~ 169 (176)
T cd03238 121 HQQDINQLLEVIKGLIDLGNTVILIEHNLD-VL-SSADWIIDFGPGSGKSG 169 (176)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEECCCCCCCC
Confidence 999999999999999878999999999874 44 67999999976554333
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=324.38 Aligned_cols=205 Identities=20% Similarity=0.325 Sum_probs=163.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 185 (641)
+.++||++.|. .+.+|+|+|+.+.+|+++||+||||||||||||+|+|+++|++ |+|.++|. ..++
T Consensus 2 i~i~nls~~~g-----~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~---G~I~~~~~------~~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRG-----VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADG---GSYTFPGN------WQLA 67 (638)
T ss_pred EEEEEEEEEeC-----CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CEEE
Confidence 68999999994 4579999999999999999999999999999999999998875 99999874 2478
Q ss_pred EEcCCCccCCCCCHHHHHHHHH-----------------------Hhc--CCC-ccchHHHHHHHHHHHcCCc-hHHhhh
Q 006548 186 FVERETTLIGSLTVREYLYYSA-----------------------LLQ--LPG-FFCQRKNVVEDAIHAMSLS-DYANKL 238 (641)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~-----------------------~~~--~~~-~~~~~~~~v~~~l~~lgL~-~~~~~~ 238 (641)
|++|+...+ ..|+.+++.-.. .+. ... .....+.+++++++.+|+. +..++.
T Consensus 68 ~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 68 WVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred EEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 888864333 246555442110 000 000 0011345788999999996 567776
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEE
Q 006548 239 IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 318 (641)
Q Consensus 239 ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v 318 (641)
++ .|||||||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||+++|+. ..+.++||++
T Consensus 147 ~~------~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~-~~l~~~~d~i 216 (638)
T PRK10636 147 VS------DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDR-DFLDPIVDKI 216 (638)
T ss_pred hh------hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHHhcCEE
Confidence 54 99999999999999999999999999999999999999999998875 46888887776 5788999999
Q ss_pred EEEeCCeEE-EEeChhHH
Q 006548 319 CLLSNGNTL-FFGETLAC 335 (641)
Q Consensus 319 ~vL~~G~iv-~~G~~~~~ 335 (641)
++|++|+++ |.|+.+..
T Consensus 217 ~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 217 IHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred EEEeCCEEEEecCCHHHH
Confidence 999999996 56765543
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=353.59 Aligned_cols=209 Identities=24% Similarity=0.304 Sum_probs=174.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.++++|+++.++.+ ..+.+|+|+|+++++||.++|+||||||||||+++|+|.++|.+ |.+.. .++.+
T Consensus 614 ~I~~~~vsF~y~~~--~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~---G~i~~-------~~~~I 681 (1495)
T PLN03232 614 AISIKNGYFSWDSK--TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAE---TSSVV-------IRGSV 681 (1495)
T ss_pred cEEEEeeEEEcCCC--CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccC---CCEEE-------ecCcE
Confidence 58999999999632 23579999999999999999999999999999999999999864 65531 23569
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCC-----CCCCCHHHHHHHHHH
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERRRVRIA 259 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~-----~~~LSGGerqRv~IA 259 (641)
+||+|++.++. .||+|||.|+. + ..+++.+++++..+|.+..+.+++|+.. ...||||||||++||
T Consensus 682 ayv~Q~p~Lf~-gTIreNI~fg~----~----~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 752 (1495)
T PLN03232 682 AYVPQVSWIFN-ATVRENILFGS----D----FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMA 752 (1495)
T ss_pred EEEcCcccccc-ccHHHHhhcCC----c----cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHH
Confidence 99999999985 59999998852 1 1356688899999998766666555433 356999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~-L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||+..+|+|+|||||||+||+.+++++++. ++.+ .+++|+|+++|++. ....||+|++|++|++++.|+.+++.+
T Consensus 753 RAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 753 RAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999999999999999999988765 5543 36789999999974 467799999999999999999888763
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=351.99 Aligned_cols=208 Identities=24% Similarity=0.330 Sum_probs=176.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCce-eEEEECCEeCCCCCce
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY-GEVFVNGAKSEMPYGS 183 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~-G~I~~~G~~~~~~~~~ 183 (641)
.++++|+++.++.. ..+.+|+|+|+++++||.++|+||||||||||+++|+|.+++. + |+|.+. +.
T Consensus 614 ~I~~~nvsf~y~~~--~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l~--------~~ 680 (1622)
T PLN03130 614 AISIKNGYFSWDSK--AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVIR--------GT 680 (1622)
T ss_pred ceEEEeeEEEccCC--CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEEc--------Ce
Confidence 58999999999632 2356999999999999999999999999999999999999875 5 799864 35
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCC-----CCCCCHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERRRVRI 258 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~-----~~~LSGGerqRv~I 258 (641)
++||+|++.++. .||+|||.|+. + ..+++.+++++..+|.+..+.++.|+.. ...||||||||++|
T Consensus 681 Iayv~Q~p~Lfn-gTIreNI~fg~----~----~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaL 751 (1622)
T PLN03130 681 VAYVPQVSWIFN-ATVRDNILFGS----P----FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSM 751 (1622)
T ss_pred EEEEcCccccCC-CCHHHHHhCCC----c----ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHH
Confidence 999999999985 69999998752 1 1356788999999998777666554432 35699999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||||..+|+|+|||||||+||+.+++++++ .++.+. +|+|+|+++|++. ....||+|++|++|++++.|+.+++.+
T Consensus 752 ARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 752 ARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999999999999998865 566553 5799999999983 467799999999999999999988753
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=320.66 Aligned_cols=205 Identities=20% Similarity=0.272 Sum_probs=161.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.+.++||++.|. .+.+|+|+||.+.+|++++|+||||||||||||+|+|+.+|++ |+|.++|. ..+
T Consensus 3 ~l~i~~ls~~~~-----~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~---G~I~~~~~------~~~ 68 (635)
T PRK11147 3 LISIHGAWLSFS-----DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDD---GRIIYEQD------LIV 68 (635)
T ss_pred EEEEeeEEEEeC-----CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---eEEEeCCC------CEE
Confidence 589999999994 3579999999999999999999999999999999999998875 99999863 135
Q ss_pred EEEcCCCccCCCCCHHHHHHHH------------------------------HHhc--CCC-ccchHHHHHHHHHHHcCC
Q 006548 185 GFVERETTLIGSLTVREYLYYS------------------------------ALLQ--LPG-FFCQRKNVVEDAIHAMSL 231 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~------------------------------~~~~--~~~-~~~~~~~~v~~~l~~lgL 231 (641)
+|++|.+......+|.+++..+ ..+. ... .....+.+++++++.+|+
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 148 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL 148 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC
Confidence 7777754333334555543211 0000 000 000134568889999998
Q ss_pred chHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHH
Q 006548 232 SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 311 (641)
Q Consensus 232 ~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i 311 (641)
.. ++. +..|||||||||+||++|+.+|+||||||||+|||+.++..+.+.|+++. .|||+++|+. ..+
T Consensus 149 ~~--~~~------~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~-~~l 216 (635)
T PRK11147 149 DP--DAA------LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDR-SFI 216 (635)
T ss_pred CC--CCc------hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCH-HHH
Confidence 62 444 45999999999999999999999999999999999999999999999873 4888877776 578
Q ss_pred HhcCCEEEEEeCCeEE-EEeChhHH
Q 006548 312 FGLFDRICLLSNGNTL-FFGETLAC 335 (641)
Q Consensus 312 ~~~~D~v~vL~~G~iv-~~G~~~~~ 335 (641)
.++||+|++|++|+++ +.|+.++.
T Consensus 217 ~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 217 RNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred HHhcCeEEEEECCEEEEecCCHHHH
Confidence 8999999999999997 45776554
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=336.27 Aligned_cols=223 Identities=22% Similarity=0.338 Sum_probs=198.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..+..+|+++.|..+. .+++++|+.+++||+.+++|+|||||||++|+|.|..+|++ |+++++|.+...
T Consensus 563 ~~~~~~~L~k~y~~~~----~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~---G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKD----GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTS---GEALIKGHDITVSTDF 635 (885)
T ss_pred ceEEEcceeeeecchh----hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCc---ceEEEecCccccccch
Confidence 4689999999885321 29999999999999999999999999999999999999976 999999987532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.++.+||+||+|.+.+.+|.+|++.+.++++.-. ..+.++.++..++.++|.+.+++.++ .+|||+|||++
T Consensus 636 ~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~-~~di~~~v~~ll~~~~L~~~~~~~~~------~ySgG~kRkLs 708 (885)
T KOG0059|consen 636 QQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLP-RSDIGSAIEKLLRLVGLGPYANKQVR------TYSGGNKRRLS 708 (885)
T ss_pred hhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCC-hhHHHHHHHHHHHHcCChhhhccchh------hCCCcchhhHH
Confidence 3467999999999999999999999998887321 12355669999999999999999765 99999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
+|.||+.+|++++|||||+|+||.+++.+++++++++++|+.+|+|+|. ++|...+|||+.+|.+|++...|+++++..
T Consensus 709 ~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHs-MeE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 709 FAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHS-MEEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 9999999999999999999999999999999999999988888887666 579999999999999999999999999987
Q ss_pred Hhhh
Q 006548 338 HFSN 341 (641)
Q Consensus 338 ~f~~ 341 (641)
.|..
T Consensus 788 rfG~ 791 (885)
T KOG0059|consen 788 RYGS 791 (885)
T ss_pred hcCC
Confidence 7654
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=346.33 Aligned_cols=208 Identities=20% Similarity=0.264 Sum_probs=173.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|.++|.+ |+|.++| .+
T Consensus 636 ~i~~~~~~~~~~~---~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~---G~i~~~g--------~i 701 (1522)
T TIGR00957 636 SITVHNATFTWAR---DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE---GHVHMKG--------SV 701 (1522)
T ss_pred cEEEEEeEEEcCC---CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCC---cEEEECC--------EE
Confidence 6899999999853 13469999999999999999999999999999999999999875 9999987 48
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHHHHHHHHH
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRIA 259 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerqRv~IA 259 (641)
+||+|++.++ +.||+||+.|+.. . .+++.+++++..++.+..+....|+ ....+||||||||++||
T Consensus 702 ~yv~Q~~~l~-~~Ti~eNI~~g~~------~--~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLA 772 (1522)
T TIGR00957 702 AYVPQQAWIQ-NDSLRENILFGKA------L--NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 772 (1522)
T ss_pred EEEcCCcccc-CCcHHHHhhcCCc------c--CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHH
Confidence 9999999886 5799999987521 1 1234566677777665544433222 35678999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH--HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA--STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~--~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|||..+|++++||||||+||+.++..+.+.+.+.. .+++|+|+++|++. .+ ..||+|++|++|+++..|+.+++.+
T Consensus 773 RAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~-~l-~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 773 RAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS-YL-PQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh-hh-hhCCEEEEecCCeEEeeCCHHHHHh
Confidence 99999999999999999999999999999997642 35789999999984 44 5599999999999999999988753
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=257.66 Aligned_cols=191 Identities=23% Similarity=0.335 Sum_probs=162.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 181 (641)
.++++||+... ++..+|.|+|++|.+||++-||||||||||||+..+.|.+.+.-..+|++++|++..+. ..
T Consensus 2 ~l~l~nvsl~l-----~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~q 76 (213)
T COG4136 2 MLCLKNVSLRL-----PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76 (213)
T ss_pred ceeeeeeeecC-----CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhh
Confidence 47889999765 35579999999999999999999999999999999999998765678999999987543 35
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+++|..+||+.+||+++|.+||.|+.--...+. .++..++.+|++.||.+..++-+ ..||||||-||++-|+
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~--aRr~~a~aAL~~~gL~g~f~~dP------~tlSGGQrARvaL~R~ 148 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGN--ARRNAANAALERSGLDGAFHQDP------ATLSGGQRARVALLRA 148 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccH--HHHhhHHHHHHHhccchhhhcCh------hhcCcchHHHHHHHHH
Confidence 789999999999999999999988642222221 35667889999999999998754 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH-HHcCCEEEEEEeCCh
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSS 308 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l-~~~g~tvi~t~h~~~ 308 (641)
|+..|+.++||||+|.||..-+.++.+.+-.- +..|..+|.++|+..
T Consensus 149 Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 149 LLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 99999999999999999999999999976654 456888888888764
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=263.66 Aligned_cols=219 Identities=22% Similarity=0.298 Sum_probs=170.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe---CC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---SE--- 178 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~---~~--- 178 (641)
.+.++++++.|. ..+-.+||||.+.|||+++|+|+|||||||||+||+++++|+. |+|.+.-.. .+
T Consensus 6 LL~V~~lsk~Yg-----~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~---G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 6 LLSVSGLSKLYG-----PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDA---GTVTYRMRDGQPRDLYT 77 (258)
T ss_pred ceeehhhhhhhC-----CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCC---CeEEEEcCCCCchhHhh
Confidence 578999998884 3457899999999999999999999999999999999999986 999986432 11
Q ss_pred ---C-----CCceEEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCC
Q 006548 179 ---M-----PYGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (641)
Q Consensus 179 ---~-----~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~L 248 (641)
. .+...|||.|++. +-...+...|+-.-....-.....+.++...++|++++++.. +. ++.|+.+
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~--Ri---DD~PrtF 152 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLD--RI---DDLPRTF 152 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcc--cc---cCccccc
Confidence 0 1124799999863 322223223331100000001112356677889999988632 21 4578899
Q ss_pred CHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 006548 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (641)
Q Consensus 249 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (641)
|||++||+.|||-|++.|+++|+||||.|||..-+..++++++.|..+ |.++++++|+. ..+.-++||.++|++|+++
T Consensus 153 SGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmvmk~g~vv 231 (258)
T COG4107 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMVMKQGQVV 231 (258)
T ss_pred chHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcceeecCCCEe
Confidence 999999999999999999999999999999999999999999999855 99999988876 4677789999999999999
Q ss_pred EEeChhHHHH
Q 006548 328 FFGETLACLQ 337 (641)
Q Consensus 328 ~~G~~~~~~~ 337 (641)
+.|-++.+++
T Consensus 232 e~GLTDrvLD 241 (258)
T COG4107 232 ESGLTDRVLD 241 (258)
T ss_pred cccccccccc
Confidence 9998887754
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=293.02 Aligned_cols=217 Identities=24% Similarity=0.316 Sum_probs=176.2
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--
Q 006548 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-- 180 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~-- 180 (641)
...+.|+|+++.|. +.+++|+++|+.+.+|+.+|++||||+||||++++|-..+.+++ |.|.+||+++...
T Consensus 260 ~g~v~F~~V~F~y~----~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s---G~I~id~qdir~vtq 332 (497)
T COG5265 260 LGAVAFINVSFAYD----PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS---GSITIDGQDIRDVTQ 332 (497)
T ss_pred cceEEEEEEEeecc----ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC---ceEEEcchhHHHhHH
Confidence 34689999999996 45789999999999999999999999999999999999999886 9999999875432
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHH
Q 006548 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGE 252 (641)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGe 252 (641)
++.+|.||||..||. -|...|+.|+. +. ..++.+..+.+...+.++....+.|.+ ..-.|||||
T Consensus 333 ~slR~aIg~VPQDtvLFN-Dti~yni~ygr----~~---at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSgge 404 (497)
T COG5265 333 QSLRRAIGIVPQDTVLFN-DTIAYNIKYGR----PD---ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGE 404 (497)
T ss_pred HHHHHHhCcCcccceehh-hhHHHHHhccC----cc---ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCch
Confidence 356999999999985 49999997752 11 223445555555555544433333222 223499999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
||||+|||+++.+|+||+|||.||+||..+.+++...|++++ .|+|.+++.|..+. + --+|.|+||++|+|++.|.-
T Consensus 405 kqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i-~~adeiivl~~g~i~erg~h 481 (497)
T COG5265 405 KQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I-IDADEIIVLDNGRIVERGTH 481 (497)
T ss_pred HHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c-cCCceEEEeeCCEEEecCcH
Confidence 999999999999999999999999999999999999999988 46677776888763 3 34899999999999999998
Q ss_pred hHHHH
Q 006548 333 LACLQ 337 (641)
Q Consensus 333 ~~~~~ 337 (641)
++++.
T Consensus 482 ~~ll~ 486 (497)
T COG5265 482 EELLA 486 (497)
T ss_pred HHHHH
Confidence 87765
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=316.92 Aligned_cols=188 Identities=22% Similarity=0.244 Sum_probs=155.6
Q ss_pred EEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCCC
Q 006548 111 LTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSEM 179 (641)
Q Consensus 111 ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~-----------~~G~~~~~ 179 (641)
+++.|. .+..+|++++ .+++||+++|+||||||||||+|+|+|+++|+. |+|. ++|.+...
T Consensus 79 ~~~~yg----~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~---G~i~~~~~~~~~~~~~~G~~l~~ 150 (590)
T PRK13409 79 PVHRYG----VNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNL---GDYEEEPSWDEVLKRFRGTELQN 150 (590)
T ss_pred ceEEec----CCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCC---ccccCCCcHHHHHHHhCChHHHH
Confidence 555553 1235999999 999999999999999999999999999999975 9997 88875321
Q ss_pred -------CCceEEEEcCCCccCCC---CCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCC
Q 006548 180 -------PYGSYGFVERETTLIGS---LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249 (641)
Q Consensus 180 -------~~~~~~yv~Q~~~l~~~---lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LS 249 (641)
....+++.+|.....|. .||+|++... +..++++++++.++|.+..++.++ +||
T Consensus 151 ~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~------~LS 214 (590)
T PRK13409 151 YFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV----------DERGKLDEVVERLGLENILDRDIS------ELS 214 (590)
T ss_pred HHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh----------hHHHHHHHHHHHcCCchhhcCChh------hCC
Confidence 11235666664433332 3999998531 234568899999999988888665 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 006548 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (641)
Q Consensus 250 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (641)
|||||||+||++|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|+. +++..++|+|++|++|
T Consensus 215 gGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 215 GGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999988 99999988886 5788999999999863
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=259.74 Aligned_cols=151 Identities=31% Similarity=0.508 Sum_probs=132.8
Q ss_pred EEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----Cc
Q 006548 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YG 182 (641)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~ 182 (641)
++|+++.++ .+.+|+++|+.+++|++++|+|+||||||||+++|+|++++.. |+|.++|.+.... .+
T Consensus 2 ~~~~~~~~~-----~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~---G~i~~~~~~~~~~~~~~~~~ 73 (157)
T cd00267 2 IENLSFRYG-----GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS---GEILIDGKDIAKLPLEELRR 73 (157)
T ss_pred eEEEEEEeC-----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEEcccCCHHHHHh
Confidence 678888874 2369999999999999999999999999999999999998865 9999999764321 13
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++| |||||+||++||+++
T Consensus 74 ~i~~~~q----------------------------------------------------------lS~G~~~r~~l~~~l 95 (157)
T cd00267 74 RIGYVPQ----------------------------------------------------------LSGGQRQRVALARAL 95 (157)
T ss_pred ceEEEee----------------------------------------------------------CCHHHHHHHHHHHHH
Confidence 4566655 999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
+.+|++++|||||+|||..++..+.+.|+++.+.++|+++++|++ .++...||++++|++|+
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999999999987688999988886 57788899999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=261.88 Aligned_cols=186 Identities=24% Similarity=0.319 Sum_probs=160.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY---- 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~---- 181 (641)
++.+||+..- ..+.++.++||++.+||++-|.||||||||||||+|+|+.+|++ |+|.++|.+.....
T Consensus 3 L~a~~L~~~R-----~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~---G~v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 3 LEAENLSCER-----GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDA---GEVYWQGEPIQNVRESYH 74 (209)
T ss_pred chhhhhhhcc-----CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCC---CeEEecCCCCccchhhHH
Confidence 4556666542 45689999999999999999999999999999999999999986 99999998754322
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.+-|+--++.+=+.+||.|||.|-..+.-. .....+.++++.+||....|.+++ .||-||||||+|||-
T Consensus 75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~----~~~~~i~~Al~~vgL~g~~dlp~~------~LSAGQqRRvAlArL 144 (209)
T COG4133 75 QALLYLGHQPGIKTELTALENLHFWQRFHGS----GNAATIWEALAQVGLAGLEDLPVG------QLSAGQQRRVALARL 144 (209)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHhCC----CchhhHHHHHHHcCcccccccchh------hcchhHHHHHHHHHH
Confidence 3466777778888899999999986554322 134568999999999999998776 999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (641)
++..+++.|||||+++||......+-.++..-+.+|..||.++|||..
T Consensus 145 ~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 145 WLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999999999999999999999988889999999999964
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=337.60 Aligned_cols=203 Identities=22% Similarity=0.312 Sum_probs=165.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.++++|+++. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|.. |+|.++| .+
T Consensus 428 ~~~~~~~s~~-------~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~---G~i~~~g--------~i 489 (1490)
T TIGR01271 428 GLFFSNFSLY-------VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSE---GKIKHSG--------RI 489 (1490)
T ss_pred cccccccccc-------cCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC--------EE
Confidence 3566666553 2469999999999999999999999999999999999999875 9999988 48
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHHHHHHHHH
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRIA 259 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerqRv~IA 259 (641)
+||+|++.+++ .||+||+.|+... ..++.+++++..+|.+..+....|+ .....|||||||||+||
T Consensus 490 ayv~Q~~~l~~-~Ti~eNI~~g~~~--------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lA 560 (1490)
T TIGR01271 490 SFSPQTSWIMP-GTIKDNIIFGLSY--------DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLA 560 (1490)
T ss_pred EEEeCCCccCC-ccHHHHHHhcccc--------chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHH
Confidence 99999999987 4999999886311 1123445566666655544433222 24568999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~-L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|||+.+|+++||||||+|||+.++..+.+. ++++. +|+|+|+++|++. .+ ..||+|++|++|+++..|+.+++.+
T Consensus 561 RAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~-~~-~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 561 RAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLE-HL-KKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH-HH-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999985 66664 4899999999985 44 4699999999999999999888753
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=327.93 Aligned_cols=194 Identities=24% Similarity=0.335 Sum_probs=154.8
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (641)
.+.+|+|+|+.+++||+++|+|||||||||||++|+|+++|+. |+|.++ +.++|++|++.++ +.||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~---G~i~~~--------~~i~yv~Q~~~l~-~~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISE---GRVWAE--------RSIAYVPQQAWIM-NATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEEC--------CeEEEEeCCCccC-CCcHHH
Confidence 3569999999999999999999999999999999999999875 999874 3599999999887 579999
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCC
Q 006548 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (641)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPts 276 (641)
|+.|+.. ...++.+++++..+|.+..+....| +.....|||||||||+|||||+.+|+++||||||+
T Consensus 740 nI~~~~~--------~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~s 811 (1560)
T PTZ00243 740 NILFFDE--------EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLS 811 (1560)
T ss_pred HHHcCCh--------hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 9987421 1122344455555444333222111 23456899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
+||+.++..+++.+.....+|+|+|+++|++. .+ ..||+|++|++|++++.|+.+++.+
T Consensus 812 aLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~-~~-~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 812 ALDAHVGERVVEECFLGALAGKTRVLATHQVH-VV-PRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999999988754322335899999999874 34 6799999999999999999888653
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=306.53 Aligned_cols=215 Identities=16% Similarity=0.159 Sum_probs=150.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..+.++|++++|. .+.+|+|+|+++.+|+.+||+|+||||||||||+|+|+.......+|+|.+.++.....
T Consensus 176 ~~I~i~nls~~y~-----~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t 250 (718)
T PLN03073 176 KDIHMENFSISVG-----GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTT 250 (718)
T ss_pred eeEEEceEEEEeC-----CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCC
Confidence 4699999999994 34699999999999999999999999999999999996411001237776543321000
Q ss_pred ----------------CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC-----------------ccchHHHHHHHHHH
Q 006548 181 ----------------YGSYGFVERETTLIGSLTVREYLYYSALLQLPG-----------------FFCQRKNVVEDAIH 227 (641)
Q Consensus 181 ----------------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-----------------~~~~~~~~v~~~l~ 227 (641)
...+++++|++.+... ++.++.........+. .....++++.++++
T Consensus 251 ~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~ 329 (718)
T PLN03073 251 ALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILA 329 (718)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 0112334443221110 1111100000000000 00013445677888
Q ss_pred HcCCc-hHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeC
Q 006548 228 AMSLS-DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 306 (641)
Q Consensus 228 ~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~ 306 (641)
.+|+. +..++.+ ..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|+|+++|+
T Consensus 330 ~lgl~~~~~~~~~------~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd 400 (718)
T PLN03073 330 GLSFTPEMQVKAT------KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHA 400 (718)
T ss_pred HCCCChHHHhCch------hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECC
Confidence 88885 4455544 499999999999999999999999999999999999999999999886 6799998887
Q ss_pred ChHHHHhcCCEEEEEeCCeEE-EEeChhH
Q 006548 307 SSTEVFGLFDRICLLSNGNTL-FFGETLA 334 (641)
Q Consensus 307 ~~~~i~~~~D~v~vL~~G~iv-~~G~~~~ 334 (641)
. ..+.++||++++|++|+++ |.|+.++
T Consensus 401 ~-~~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 401 R-EFLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred H-HHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 5 5788999999999999996 6676554
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-31 Score=292.24 Aligned_cols=203 Identities=26% Similarity=0.317 Sum_probs=166.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.++++|+++.| +.+.+++|+|+.+.+|+.+||||+||||||||||+|+|...|+. |+|...+. .++
T Consensus 3 ~i~~~~ls~~~-----g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~---G~i~~~~~------~~v 68 (530)
T COG0488 3 MITLENLSLAY-----GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS---GEVTRPKG------LRV 68 (530)
T ss_pred eEEEeeeEEee-----CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCC---CeEeecCC------ceE
Confidence 58999999999 35689999999999999999999999999999999999998875 99987542 369
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhc-------------CCCc----------------cchHHHHHHHHHHHcCCchHH
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQ-------------LPGF----------------FCQRKNVVEDAIHAMSLSDYA 235 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~-------------~~~~----------------~~~~~~~v~~~l~~lgL~~~~ 235 (641)
+|++|+..+.+..||.+.+.-+..-. ++.. ....+.+++.++..+|+.+.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~- 147 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE- 147 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-
Confidence 99999999999999999886543100 0000 00123567788888888766
Q ss_pred hhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcC
Q 006548 236 NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315 (641)
Q Consensus 236 ~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~ 315 (641)
++.++ +||||||.||+||++|+.+|++|+|||||++||..+..-+-+.|++. +| |+|+++|+ ...+-+.|
T Consensus 148 ~~~~~------~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~ 217 (530)
T COG0488 148 DRPVS------SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVA 217 (530)
T ss_pred cCchh------hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHh
Confidence 66555 99999999999999999999999999999999999999999888864 46 88886665 67899999
Q ss_pred CEEEEEeCCeEEE-EeCh
Q 006548 316 DRICLLSNGNTLF-FGET 332 (641)
Q Consensus 316 D~v~vL~~G~iv~-~G~~ 332 (641)
++|+-++.|++.. .|.-
T Consensus 218 t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 218 THILELDRGKLTPYKGNY 235 (530)
T ss_pred hheEEecCCceeEecCCH
Confidence 9999999998754 4543
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=263.03 Aligned_cols=189 Identities=21% Similarity=0.213 Sum_probs=133.8
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHH-HHHHcCCCCCCCceeEEEEC-----------C--EeCC---CCCceE
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLL-RAIAGRLPHSARMYGEVFVN-----------G--AKSE---MPYGSY 184 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl-~~LaG~~~~~~~~~G~I~~~-----------G--~~~~---~~~~~~ 184 (641)
...+|+|+|+++++||+++|+|+||||||||+ ..+.. .|++.+. | ...+ ......
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA--------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH--------HHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 45699999999999999999999999999995 44431 1221110 0 0000 011122
Q ss_pred EEEcCCC--ccCCCCCHHH---HHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 185 GFVERET--TLIGSLTVRE---YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 185 ~yv~Q~~--~l~~~lTV~E---~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.+..|++ .+.+..+|.. ...+...+. .. ....++ .+.++.++|.+ ..++ ++.+|||||||||+|
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~--~~~~~~-~~~l~~~~l~~~~~~~------~~~~LSgG~~qrv~l 148 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-AR--VGIRER-LGFLVDVGLGYLTLSR------SAPTLSGGEAQRIRL 148 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHh-hh--hhHHHH-HHHHHHCCCCcccccC------ccCcCCHHHHHHHHH
Confidence 3333332 2344455542 222211111 11 112223 56899999975 3555 456999999999999
Q ss_pred HHHHHhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEe
Q 006548 259 ARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFG 330 (641)
Q Consensus 259 A~aL~~~P--~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G 330 (641)
||+|+.+| ++|||||||+|||+.++..+.+.|++++++|.|+|+++|++. ++ ++||++++| ++|+|+++|
T Consensus 149 aral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 149 ATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 99999998 599999999999999999999999999878999999999974 45 689999999 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=307.77 Aligned_cols=216 Identities=24% Similarity=0.349 Sum_probs=184.7
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++|++++|.. +...+|||||++|+|||.+||+|..|||||||+++|-++..|.+ |+|.+||.++..
T Consensus 1137 G~I~f~~~~~RYrp---~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~---G~I~IDgvdI~~igL~ 1210 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRP---NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAE---GEILIDGVDISKIGLH 1210 (1381)
T ss_pred CeEEEEEeEEEeCC---CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccC---CeEEEcCeecccccHH
Confidence 46999999999953 34689999999999999999999999999999999999998865 999999998642
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (641)
.+++++.+|||+.+|. .|||.||. | .....++.+.++||..+|.+...+++++.+ ...++|-|||
T Consensus 1211 dLRsrlsIIPQdPvLFs-GTvR~NLD-------P-f~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQR 1281 (1381)
T KOG0054|consen 1211 DLRSRLSIIPQDPVLFS-GTVRFNLD-------P-FDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQR 1281 (1381)
T ss_pred HHHhcCeeeCCCCceec-CccccccC-------c-ccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHH
Confidence 2467999999999995 59999993 1 111256779999999999887766654322 2356999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
|.+++||||+++.+||+|||+|++.|+.+-..|-+.||+-- +++|||.+.|.... +.+ +|||+||++|+++++|+|.
T Consensus 1282 QLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-Vmd-~DrVlVld~G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1282 QLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-VMD-SDRVLVLDAGRVVEFDSPA 1358 (1381)
T ss_pred HHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-hhh-cCeEEEeeCCeEeecCChH
Confidence 99999999999999999999999999999999999999854 37999999998764 443 8999999999999999999
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
++++
T Consensus 1359 ~Ll~ 1362 (1381)
T KOG0054|consen 1359 ELLS 1362 (1381)
T ss_pred HHHh
Confidence 9875
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-28 Score=290.03 Aligned_cols=210 Identities=23% Similarity=0.332 Sum_probs=181.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..++++|.+++.... .....|+|||+++++|+++||+|+-|||||+||.+|.|.++.. +|+|.++|.
T Consensus 517 ~~i~i~~~sfsW~~~--~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~gs-------- 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSE--SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNGS-------- 583 (1381)
T ss_pred ceEEEeeeeEecCCC--CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcCe--------
Confidence 468999999987542 3345999999999999999999999999999999999999875 499999985
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERRRVRI 258 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerqRv~I 258 (641)
++||+|++-++ +.||+||+.|+.. -.+++-+++++.+.|.+-.+.++.|+. ....||||||||+++
T Consensus 584 iaYv~Q~pWI~-ngTvreNILFG~~--------~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsL 654 (1381)
T KOG0054|consen 584 VAYVPQQPWIQ-NGTVRENILFGSP--------YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISL 654 (1381)
T ss_pred EEEeccccHhh-CCcHHHhhhcCcc--------ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHH
Confidence 89999999988 5699999998631 245678999999999887777765543 345699999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|||+-++.+|.+||.|.|++|++...++.+..-+..-+++|+|++|||. +..+.||.|++|++|+|+..|+.+|+.+
T Consensus 655 ARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 655 ARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred HHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 9999999999999999999999999999886665555689999999975 5678899999999999999999998873
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-30 Score=238.70 Aligned_cols=209 Identities=20% Similarity=0.260 Sum_probs=168.3
Q ss_pred eEEEEeEEEEEecccc--cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe--CC--
Q 006548 105 SVVWKDLTVTIKGKRR--YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK--SE-- 178 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~--~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~--~~-- 178 (641)
.+..+|+++++.-+.+ -..++|+|+|+.++.||++++=||||+|||||||+|-|-+.|++ |+|++.-.. .+
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~---G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDE---GQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCC---ceEEEEeCcchhhhh
Confidence 5788899887743322 23579999999999999999999999999999999999999986 999985321 11
Q ss_pred ---------CCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCC
Q 006548 179 ---------MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249 (641)
Q Consensus 179 ---------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LS 249 (641)
.+++.+|||.|--...|..+..|.+..++.-+. ........++..++..+++.+..-.+ .|..+|
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~g-v~~~~a~~~a~~Ll~rLnlperLW~L-----aPaTFS 154 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARG-VPREVARAKAADLLTRLNLPERLWSL-----APATFS 154 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCCCHHHhcC-----CCcccC
Confidence 123568999999888999888888877654331 12223566788999999997665543 456999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 250 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
|||+|||.|||.++.+-+||+|||||+.||..++..++++|++-+..|..+|=+-| +.+.-...|||++-+..
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFH-Deevre~vadR~~~~~~ 227 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFH-DEEVREAVADRLLDVSA 227 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeec-cHHHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999999999998888988877555 44444568999988753
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=239.55 Aligned_cols=132 Identities=35% Similarity=0.597 Sum_probs=117.4
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CCceEEEEcCCCccCCCCCHH
Q 006548 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----PYGSYGFVERETTLIGSLTVR 200 (641)
Q Consensus 126 L~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~ 200 (641)
|+|+|+++++||+++|+|+||||||||+++|+|..++. +|+|.++|.+... ..+.++|++|++.+++.+||+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD---SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES---EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999885 4999999998654 135799999999999999999
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCC
Q 006548 201 EYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (641)
Q Consensus 201 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPts 276 (641)
|| ..+++++++++.+++.+..++.++ .....|||||||||+||+||+.+|++|||||||+
T Consensus 78 ~~--------------~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 EN--------------ESDERIEEVLKKLGLEDLLDRKIG--QRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH--------------HHHHHHHHHHHHTTHGGGTGSBGT--SCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc--------------cccccccccccccccccccccccc--cccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 99 134568899999999988888774 3447999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-29 Score=255.69 Aligned_cols=195 Identities=20% Similarity=0.253 Sum_probs=150.1
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHH-----cCC-----CCC--CCcee------EEEECCEeCCCCC---
Q 006548 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-----GRL-----PHS--ARMYG------EVFVNGAKSEMPY--- 181 (641)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~La-----G~~-----~~~--~~~~G------~I~~~G~~~~~~~--- 181 (641)
..-|+||+..++.|++++|.|+||||||||++.+. ... .|. ....| -|.++..++....
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 35799999999999999999999999999998552 110 011 00112 3566655431100
Q ss_pred ----------------------------ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch
Q 006548 182 ----------------------------GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD 233 (641)
Q Consensus 182 ----------------------------~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 233 (641)
..+.|..++......+||.|++.|...+. ..+++.++++.+||.+
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~-------~~~~~~~~L~~vgL~~ 160 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP-------KIARKLQTLCDVGLGY 160 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh-------hHHHHHHHHHHcCCch
Confidence 01345556656667899999998865331 2245678999999987
Q ss_pred -HHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChH
Q 006548 234 -YANKLIGGHCYMKGLPCGERRRVRIARELVMR---PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309 (641)
Q Consensus 234 -~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~---P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (641)
..++. +..||||||||+.||++|+.+ |+++||||||+|||+..+..+.+.|++++++|.|+|+++|++.
T Consensus 161 l~l~~~------~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~- 233 (261)
T cd03271 161 IKLGQP------ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD- 233 (261)
T ss_pred hhhcCc------cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-
Confidence 35554 459999999999999999996 7999999999999999999999999999988999999999874
Q ss_pred HHHhcCCEEEEE------eCCeEEEEeCh
Q 006548 310 EVFGLFDRICLL------SNGNTLFFGET 332 (641)
Q Consensus 310 ~i~~~~D~v~vL------~~G~iv~~G~~ 332 (641)
.+ +.||+++.| ++|++++.|++
T Consensus 234 ~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 VI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 44 579999999 89999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-28 Score=269.31 Aligned_cols=203 Identities=25% Similarity=0.308 Sum_probs=166.9
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 006548 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~ 182 (641)
...++++|+++.|.+ .+.+++++|+.+.+|+.+||+||||+|||||||+|+|...|.+ |+|.+.- .-
T Consensus 319 ~~vl~~~~~~~~y~~----~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~---G~v~~g~------~v 385 (530)
T COG0488 319 KLVLEFENVSKGYDG----GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLS---GTVKVGE------TV 385 (530)
T ss_pred CeeEEEeccccccCC----CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCC---ceEEeCC------ce
Confidence 457899999999953 2689999999999999999999999999999999999988864 9998742 14
Q ss_pred eEEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 183 SYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 183 ~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
.+||..|+. .+.+..|+.|++.-.. +. ..+..+...|..+++. +...+.+ ..||||||.||.+|+
T Consensus 386 ~igyf~Q~~~~l~~~~t~~d~l~~~~----~~---~~e~~~r~~L~~f~F~~~~~~~~v------~~LSGGEk~Rl~La~ 452 (530)
T COG0488 386 KIGYFDQHRDELDPDKTVLEELSEGF----PD---GDEQEVRAYLGRFGFTGEDQEKPV------GVLSGGEKARLLLAK 452 (530)
T ss_pred EEEEEEehhhhcCccCcHHHHHHhhC----cc---ccHHHHHHHHHHcCCChHHHhCch------hhcCHhHHHHHHHHH
Confidence 589999986 5557889999985321 11 1256788999999996 4455555 499999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE-eChhHHH
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF-GETLACL 336 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~-G~~~~~~ 336 (641)
.++.+|.+|||||||++||..+...+.+.|... ..|||+++|+. ..+..+|++++.+.+ ++..+ |..++..
T Consensus 453 ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 453 LLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred HhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 999999999999999999999999999999886 35788877775 689999999999998 55444 6655443
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=243.60 Aligned_cols=165 Identities=19% Similarity=0.238 Sum_probs=129.5
Q ss_pred eceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC------CCceeEEEECCEeCCC--CCceEEEEcCCCccCCCCC
Q 006548 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS------ARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLT 198 (641)
Q Consensus 127 ~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~------~~~~G~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lT 198 (641)
+++++.+.+| +++|+||||||||||+++|+|+.++. ....|++.++|++... ..+.++|++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6788999999 99999999999999999999997654 1123567777765322 235799999988765
Q ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHH----hCCcEEEEeCC
Q 006548 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV----MRPHVLFIDEP 274 (641)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~----~~P~iLlLDEP 274 (641)
|. . ...++++++++. .+..++ .+..||||||||++||++|+ .+|++++||||
T Consensus 89 ------~~----~-----~~~~~~~~~l~~---~~~~~~------~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 ------YS----I-----ISQGDVSEIIEA---PGKKVQ------RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred ------ee----E-----EehhhHHHHHhC---CCcccc------chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 11 0 012356677766 334444 44599999999999999997 46699999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 275 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 275 tsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
|+|||+.++..+.+.|+++++ +.|||+++|++. . .+.||+++.+..
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~-~~~~d~v~~~~~ 190 (197)
T cd03278 145 DAALDDANVERFARLLKEFSK-ETQFIVITHRKG-T-MEAADRLYGVTM 190 (197)
T ss_pred cccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-H-HhhcceEEEEEe
Confidence 999999999999999999975 688999888874 4 468999999964
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=260.82 Aligned_cols=211 Identities=21% Similarity=0.337 Sum_probs=173.8
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--
Q 006548 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-- 180 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~-- 180 (641)
...++++|++.. ..++|+||++++||+++|-|-=|||+|-|+++|.|..++.+ |+|.+||++....
T Consensus 261 ~~~l~v~~l~~~---------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~---G~i~l~G~~v~~~sp 328 (500)
T COG1129 261 EPVLEVRNLSGG---------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASS---GEILLDGKPVRIRSP 328 (500)
T ss_pred CcEEEEecCCCC---------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCC---ceEEECCEEccCCCH
Confidence 346788888642 25899999999999999999999999999999999877654 9999999976432
Q ss_pred ----CceEEEEcCC---CccCCCCCHHHHHHHHHHhcCCC----ccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCC
Q 006548 181 ----YGSYGFVERE---TTLIGSLTVREYLYYSALLQLPG----FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGL 248 (641)
Q Consensus 181 ----~~~~~yv~Q~---~~l~~~lTV~E~l~~~~~~~~~~----~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~L 248 (641)
...++||+.| ..++..++|++|+.++...+... ...+.++.+++..+.+++. .-.+. .+..|
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~------~v~~L 402 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQ------PIGTL 402 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccc------hhhcC
Confidence 2369999986 56889999999998873322211 1112455688888998885 22333 34599
Q ss_pred CHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 249 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
|||.+|||.|||.|..+|++|||||||.|.|.-++.+|.++|++++++|++||++++.. +|+..+||||+||++|+++.
T Consensus 403 SGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 403 SGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVG 481 (500)
T ss_pred CchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999976665 69999999999999999987
Q ss_pred EeCh
Q 006548 329 FGET 332 (641)
Q Consensus 329 ~G~~ 332 (641)
.=+.
T Consensus 482 e~~~ 485 (500)
T COG1129 482 ELDR 485 (500)
T ss_pred Eecc
Confidence 5443
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-29 Score=233.27 Aligned_cols=206 Identities=25% Similarity=0.361 Sum_probs=171.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.+.++|+...- -|-.+|+.+..||++-++|||||||||||-.++|+++.. |+|.++|.+.+..
T Consensus 3 l~qln~v~~~t---------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~s----Gsi~~~G~~l~~~~~~e 69 (248)
T COG4138 3 LMQLNDVAEST---------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS----GSIQFAGQPLEAWSATE 69 (248)
T ss_pred eeeeccccccc---------cccccccccccceEEEEECCCCccHHHHHHHHhCCCCCC----ceEEECCcchhHHhHhH
Confidence 35667776532 477889999999999999999999999999999998753 9999999875421
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
.++-+|..|+..-...+.|..++.. ..|. ......++++.+.++|.+...+.+. .|||||-|||-+|
T Consensus 70 LArhRAYLsQqq~p~f~mpV~~YL~L----~qP~--~~~a~~i~~i~~~L~l~DKL~Rs~~------qLSGGEWQRVRLA 137 (248)
T COG4138 70 LARHRAYLSQQQTPPFAMPVWHYLTL----HQPD--KTRTELLNDVAGALALDDKLGRSTN------QLSGGEWQRVRLA 137 (248)
T ss_pred HHHHHHHHhhccCCcchhhhhhhhhh----cCch--HHHHHHHHHHHhhhcccchhhhhhh------hcCcccceeeEEe
Confidence 2345788887666667889888854 3333 2355668889999999988887664 9999999999999
Q ss_pred HHHHh-----CC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 260 RELVM-----RP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 260 ~aL~~-----~P--~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
...+. || ++|++|||.++||...+..+-++|.+++..|.+||++.|+.. ...+.+|++++|++|++...|..
T Consensus 138 av~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~rG~l~~~G~~ 216 (248)
T COG4138 138 AVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKRGKLLASGRR 216 (248)
T ss_pred EEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHhcCeEEeecch
Confidence 87764 44 699999999999999999999999999999999999888775 67788999999999999999999
Q ss_pred hHHH
Q 006548 333 LACL 336 (641)
Q Consensus 333 ~~~~ 336 (641)
++++
T Consensus 217 ~eVl 220 (248)
T COG4138 217 EEVL 220 (248)
T ss_pred hhhc
Confidence 9876
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=242.99 Aligned_cols=184 Identities=17% Similarity=0.191 Sum_probs=127.8
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC----------------CCCCCC---cee--EEEECCEeCC--
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR----------------LPHSAR---MYG--EVFVNGAKSE-- 178 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~----------------~~~~~~---~~G--~I~~~G~~~~-- 178 (641)
.+.++++++ |++++|+||||||||||+++|+++ +.++.. ..+ +|.+++.+..
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~ 88 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP 88 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC
Confidence 356778876 789999999999999999999843 222220 112 5555553211
Q ss_pred ---C---CCceEEEEcCCCccCC-CCCHHHHHHHHHHhcCCCccc---hHHHHHHHHHHHcCCchHHhhhhcCCCCCCCC
Q 006548 179 ---M---PYGSYGFVERETTLIG-SLTVREYLYYSALLQLPGFFC---QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (641)
Q Consensus 179 ---~---~~~~~~yv~Q~~~l~~-~lTV~E~l~~~~~~~~~~~~~---~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~L 248 (641)
. ..+.+++++|+..+++ ..|..|...+........... ....++ .+.+++.+..+. .+..|
T Consensus 89 ~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i---~~l~~l~~~~~~------~~~~l 159 (243)
T cd03272 89 IDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKI---NSLTNMKQDEQQ------EMQQL 159 (243)
T ss_pred CCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCch---HHhhhccccccc------ccccc
Confidence 1 1245889988887776 467777666554443322100 012223 333444443444 44599
Q ss_pred CHHHHHHHHHHHHHHh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 249 PCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 249 SGGerqRv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
|||||||++||++|+. +|+++|+||||+|||+.++..+.+.|+++++ ++++|+++|. . ++.++||++++|.
T Consensus 160 S~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~-~-~~~~~~d~i~~l~ 234 (243)
T cd03272 160 SGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFR-P-ELLEVADKFYGVK 234 (243)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecC-H-HHHhhCCEEEEEE
Confidence 9999999999999974 5899999999999999999999999999865 6777765554 3 6789999999995
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=256.68 Aligned_cols=196 Identities=23% Similarity=0.330 Sum_probs=164.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..++++||++.-++ ++..|++.++.+++||.+.|.||||||||||+|+|+|+.|.++ |+|..- ....
T Consensus 391 ~~i~~~nl~l~~p~----~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~---G~I~~P------~~~~ 457 (604)
T COG4178 391 HGITLENLSLRTPD----GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGS---GRISMP------ADSA 457 (604)
T ss_pred ceeEEeeeeEECCC----CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCC---CceecC------CCCc
Confidence 57999999998763 4589999999999999999999999999999999999999865 877653 2245
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccc-hHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFC-QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
+-|+||.+.+. ..|.+|.|.|+. ... -.++.+.++|+++||.++.++.-+.++.-+.||+||||||++||.|
T Consensus 458 ~lflpQ~PY~p-~GtLre~l~YP~------~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARil 530 (604)
T COG4178 458 LLFLPQRPYLP-QGTLREALCYPN------AAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL 530 (604)
T ss_pred eEEecCCCCCC-CccHHHHHhCCC------CCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHH
Confidence 78999999865 559999998752 211 2567789999999999999887665667788999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
+++|++++|||.|++||+.++..++++|++-. .+.|||.+.|.+. +..+.++.+-+.
T Consensus 531 L~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 531 LHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred HcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 99999999999999999999999999998843 3688998888874 566667665553
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-28 Score=241.17 Aligned_cols=186 Identities=15% Similarity=0.171 Sum_probs=134.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-CCCce
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-MPYGS 183 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~-~~~~~ 183 (641)
.++++|.. .| ..+++|+++++ ++++|+||||||||||+++|.-. +|.+.. ...+.
T Consensus 5 ~l~l~nfk-~~-----~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-------------~G~~~~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SY-----AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-------------FGFRASKMRQKK 60 (212)
T ss_pred EEEEECcc-cC-----CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-------------hccCHHHhhhhh
Confidence 35666654 33 34578998887 89999999999999999999832 121111 11245
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhc------CCCccchHHH---HHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQ------LPGFFCQRKN---VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~------~~~~~~~~~~---~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
+++++|+..+.+.+|++|++.+..... ..+...+... ..+++++.++|.+..++.+ ..||+||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~------~~lS~G~~~ 134 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI------SNLSGGEKT 134 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch------hhcCHHHHH
Confidence 788888888888888888765433211 0000000001 1256667778877676654 489999999
Q ss_pred HHHHHHHHHh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 255 RVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 255 Rv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
|++||++++. +|++++|||||+|||+.++..+.+.|+++++ +.++|+++|++ ++.++||++++|..
T Consensus 135 r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 135 LSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 9999999974 4799999999999999999999999999864 55667767875 67899999999974
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=238.03 Aligned_cols=176 Identities=17% Similarity=0.130 Sum_probs=135.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE-eC-------CCCCceEEEEcCCC---------ccCCCCC
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA-KS-------EMPYGSYGFVERET---------TLIGSLT 198 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~-~~-------~~~~~~~~yv~Q~~---------~l~~~lT 198 (641)
..+++|+||||||||||+++|++++.+.. .|++...|. +. ......+++++|++ .+.|.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~--~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITN--LSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccc--cccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 55999999999999999999999987642 267777665 21 11224688999984 3567889
Q ss_pred HHHHHHHHHHhcCC-CccchHHHHHHHHHHHcCCc--------------------hHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 199 VREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLS--------------------DYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 199 V~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~--------------------~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
|.+++.++...+.. .......+++.++++.+|+. +..+ ..+.+||||||||++
T Consensus 103 V~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~------~~~~~lS~G~~qr~~ 176 (251)
T cd03273 103 VTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWK------ESLTELSGGQRSLVA 176 (251)
T ss_pred EEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhc------ccccccCHHHHHHHH
Confidence 99888654221110 01112446788999999985 2222 356699999999999
Q ss_pred HHHHHH----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 258 IARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 258 IA~aL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
||++|+ .+|+++++||||+|||+.++..+.+.|+++. +|.++|+++|.+ ++.+.||+++-+.
T Consensus 177 la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 177 LSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 999998 4789999999999999999999999999985 488999989984 6788899999875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-25 Score=237.54 Aligned_cols=219 Identities=22% Similarity=0.287 Sum_probs=180.3
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CC--
Q 006548 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EM-- 179 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~-~~-- 179 (641)
...++++||++.-. .+...+++|||.+++||+++|.|-.|-|-+.|+.+|+|+.++.. |+|.++|++. ..
T Consensus 255 ~~vL~V~~L~v~~~----~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~---G~I~l~G~~v~~~~~ 327 (501)
T COG3845 255 EVVLEVEDLSVKDR----RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS---GRILLNGKDVLGRLS 327 (501)
T ss_pred CeEEEEeeeEeecC----CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCC---ceEEECCEeccccCC
Confidence 45789999987643 23578999999999999999999999999999999999987754 9999999985 11
Q ss_pred ----CCceEEEEcCCC---ccCCCCCHHHHHHHHHHhcCC----C--ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCC
Q 006548 180 ----PYGSYGFVERET---TLIGSLTVREYLYYSALLQLP----G--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246 (641)
Q Consensus 180 ----~~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~----~--~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 246 (641)
....++|||+|. .+.+.+|+.||+.+....+.| . ......+..+++++++++...- .....+
T Consensus 328 ~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~-----~~~~a~ 402 (501)
T COG3845 328 PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPS-----PDAPAR 402 (501)
T ss_pred HHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCC-----CCcchh
Confidence 124689999985 577899999999776432211 0 1122456678889988876211 123467
Q ss_pred CCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
.||||++||+-+||+|..+|++|++.+||.|||..+...+.+.|.++++.|+.|++++. ..+|++.+||||.+|++|++
T Consensus 403 ~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~-dLDEil~lsDrIaVi~~Gri 481 (501)
T COG3845 403 SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISE-DLDEILELSDRIAVIYEGRI 481 (501)
T ss_pred hcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEeh-hHHHHHHhhheeeeeeCCce
Confidence 99999999999999999999999999999999999999999999999999999999655 45799999999999999999
Q ss_pred EEEeChhH
Q 006548 327 LFFGETLA 334 (641)
Q Consensus 327 v~~G~~~~ 334 (641)
+...++++
T Consensus 482 ~~~~~~~~ 489 (501)
T COG3845 482 VGIVPPEE 489 (501)
T ss_pred eccccccc
Confidence 98887765
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.6e-26 Score=225.82 Aligned_cols=191 Identities=16% Similarity=0.124 Sum_probs=129.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEe-CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE----eCCC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA----KSEM 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~-~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~----~~~~ 179 (641)
.++++|+. .|.+ . ++++|... +|++++|+||||||||||+++|++.+-.. ..+....+.. ....
T Consensus 5 ~i~l~nf~-~y~~-----~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~--~~~~~~~~~~~~~~~~~~ 73 (213)
T cd03279 5 KLELKNFG-PFRE-----E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGK--TPRYGRQENLRSVFAPGE 73 (213)
T ss_pred EEEEECCc-CcCC-----c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecC--ccccccchhHHHHhcCCC
Confidence 46777776 4421 1 45565543 58999999999999999999999643111 1132322210 1112
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHH-HHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED-AIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
....+++++|+..... ++.... .. ..++..+. .++..++.+..++ .+..||||||||++|
T Consensus 74 ~~~~v~~~f~~~~~~~--~~~r~~---------gl--~~~~~~~~~~l~~g~l~~~l~~------~~~~lS~G~~~r~~l 134 (213)
T cd03279 74 DTAEVSFTFQLGGKKY--RVERSR---------GL--DYDQFTRIVLLPQGEFDRFLAR------PVSTLSGGETFLASL 134 (213)
T ss_pred ccEEEEEEEEECCeEE--EEEEec---------CC--CHHHHHHhhhhhhcchHHHhcC------CccccCHHHHHHHHH
Confidence 2346888888763211 111111 10 01111111 2344445555555 445999999999999
Q ss_pred HHHHHh----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 259 ARELVM----------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 259 A~aL~~----------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
|++|+. +|+++||||||+|||+.+...+.+.|+++++++.|+|+++|++ +.+...+|+++++++|.+
T Consensus 135 a~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~-~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 135 SLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVE-ELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECch-HHHHhhCcEEEEEecCCC
Confidence 999985 5789999999999999999999999999987789999999987 478899999999998853
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-25 Score=221.65 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=122.9
Q ss_pred eeeEEeCCcEEEEECCCCCcHHHHHHHHH----cCCCCCCCceeEEEECCEeC--CCCCceEEEEcCCC-----ccCCCC
Q 006548 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIA----GRLPHSARMYGEVFVNGAKS--EMPYGSYGFVERET-----TLIGSL 197 (641)
Q Consensus 129 vs~~i~~Ge~~aIiGpsGsGKSTLl~~La----G~~~~~~~~~G~I~~~G~~~--~~~~~~~~yv~Q~~-----~l~~~l 197 (641)
.++.+.+| +++|+||||||||||+++|. |..+++. |.+..+.... ......+++++|++ .....+
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~---~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNS---KGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCccc---ccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566677 99999999999999999995 8877653 5554111111 12234688888887 445556
Q ss_pred CHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH------HHHHHHHHhCCcEEEE
Q 006548 198 TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR------VRIARELVMRPHVLFI 271 (641)
Q Consensus 198 TV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR------v~IA~aL~~~P~iLlL 271 (641)
|+.|++.+. + ++.+++.+ ++ .++.||+||||| ++||++|+.+|+++++
T Consensus 92 ~~~~~~~~~-----~------~~~~~~~~---------~~------~~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 92 AILENVIFC-----H------QGESNWPL---------LD------MRGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred hHhhceeee-----c------hHHHHHHH---------hc------CccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 888888542 1 11223222 33 445999999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 272 DEPLYHLDSVSAL-LMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 272 DEPtsgLD~~~~~-~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
||||++||+.++. .+.+.|++++++ |.++|+++|++. ....||+++.|.+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 9999999999999 999999999876 889999999864 3467999999963
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-24 Score=263.64 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=110.9
Q ss_pred cCCCCCHHHHHHHHHHhc--CCCccchHHHHHHHHHHHcCCchH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHH---hCC
Q 006548 193 LIGSLTVREYLYYSALLQ--LPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELV---MRP 266 (641)
Q Consensus 193 l~~~lTV~E~l~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~---~~P 266 (641)
.+...||.|+|.+...-. ......+..+++ ++++.+||.+. .++.+ ..||||||||++||++|+ .+|
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~------~tLSGGE~QRV~LAraL~~~~~~P 831 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL------SSLSGGEIQRLKLAYELLAPSKKP 831 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc------ccCCHHHHHHHHHHHHHhhcCCCC
Confidence 456789999998765421 111112234455 58899999876 66644 499999999999999998 699
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe------CCeEEEEeChhHHHH
Q 006548 267 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS------NGNTLFFGETLACLQ 337 (641)
Q Consensus 267 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~------~G~iv~~G~~~~~~~ 337 (641)
++|||||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.||++++|. +|+++..|+++++..
T Consensus 832 ~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 832 TLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 999999999999999999999999999988999999888874 56 8999999996 799999999988753
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-24 Score=251.38 Aligned_cols=126 Identities=21% Similarity=0.263 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCC---cEEEEe
Q 006548 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRP---HVLFID 272 (641)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P---~iLlLD 272 (641)
+||.|++.|...+. ...+..+.++.+||.. ..++.+ ..||||||||+.||++|+.+| +++|||
T Consensus 792 ltv~E~l~~f~~~~-------~i~~~l~~L~~vgL~~l~l~~~~------~tLSgGEkQRl~LAraL~~~p~~~~llILD 858 (943)
T PRK00349 792 MTVEEALEFFEAIP-------KIARKLQTLVDVGLGYIKLGQPA------TTLSGGEAQRVKLAKELSKRSTGKTLYILD 858 (943)
T ss_pred CcHHHHHHHHHhch-------hhhHHHHHHHHCCCCcccccCCc------ccCCHHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 78888888754321 1123467899999975 355544 499999999999999999999 999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHHH
Q 006548 273 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (641)
Q Consensus 273 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (641)
|||+|||+..+..+++.|+++.++|.|||+++|++. .+ ..||+|+.| ++|++++.|+++++..
T Consensus 859 EPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 859 EPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 999999999999999999999888999999988874 45 579999999 7999999999988754
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-25 Score=227.49 Aligned_cols=203 Identities=19% Similarity=0.230 Sum_probs=160.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY--- 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~--- 181 (641)
.++++|+.|.|.. ..-=+..||+++++||++-|+|.||||||||+++|.|+.+|++ |+|++||+++....
T Consensus 322 ~lelrnvrfay~~----~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pqs---G~I~ldg~pV~~e~led 394 (546)
T COG4615 322 TLELRNVRFAYQD----NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQS---GEILLDGKPVSAEQLED 394 (546)
T ss_pred ceeeeeeeeccCc----ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCC---CceeECCccCCCCCHHH
Confidence 6899999999853 2246889999999999999999999999999999999999986 99999999865321
Q ss_pred -c-eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 182 -G-SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 182 -~-~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
+ -++-|+-|-.+|+.+ +. +.. ....+.++..++.+.|.+...-.-| +-..-.||.|||||+++-
T Consensus 395 YR~LfSavFsDyhLF~~l-----------l~-~e~-~as~q~i~~~LqrLel~~ktsl~d~-~fs~~kLStGQkKRlAll 460 (546)
T COG4615 395 YRKLFSAVFSDYHLFDQL-----------LG-PEG-KASPQLIEKWLQRLELAHKTSLNDG-RFSNLKLSTGQKKRLALL 460 (546)
T ss_pred HHHHHHHHhhhHhhhHhh-----------hC-Ccc-CCChHHHHHHHHHHHHhhhhcccCC-cccccccccchHHHHHHH
Confidence 1 233344444444432 11 111 1245668889999988765433222 334568999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK-LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~-l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
.||+-+-+|+++||=-+--||.-++.+.+.+-- ++++|+||+.++|++ .-+..+||++.+++|++++.-
T Consensus 461 ~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 461 LALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 999999999999999999999999999986654 567799999988886 468899999999999998754
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-23 Score=243.77 Aligned_cols=125 Identities=19% Similarity=0.227 Sum_probs=102.7
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHHHHHHHh---CCcEEEE
Q 006548 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVM---RPHVLFI 271 (641)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~---~P~iLlL 271 (641)
.+||.|.+.|...+. ...+..++++.+||.. ..++. +..|||||+||+.||++|+. +|++++|
T Consensus 789 ~~tv~e~~~f~~~~~-------~i~~~l~~L~~~gL~~l~l~~~------~~tLSgGe~QRl~LA~aL~~~~~~p~llIL 855 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP-------SISRKLQTLCDVGLGYIKLGQP------ATTLSGGEAQRIKLAKELSKRSTGRTLYIL 855 (924)
T ss_pred CCcHHHHHHHHHhcc-------chhHHHHHHHHcCCCchhhcCc------cccCCHHHHHHHHHHHHHhhcCCCCCEEEE
Confidence 467777777654321 1123457889999975 35554 45999999999999999997 5999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHH
Q 006548 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLAC 335 (641)
Q Consensus 272 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~ 335 (641)
||||+|||+..+..+++.|+++.++|.|||+++|++. .+ ..||++++| ++|++++.|+++++
T Consensus 856 DEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 856 DEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999999999999988999999888874 45 579999999 79999999998764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=225.84 Aligned_cols=211 Identities=26% Similarity=0.293 Sum_probs=141.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-Cce
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGS 183 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~-~~~ 183 (641)
.+.++|+++.+. ++.+++|+++.+.+|+-++|+|+|||||||+|++|.|...|.....+ ++.-.+..... .+.
T Consensus 75 dvk~~sls~s~~-----g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d-~y~ls~e~~ps~~~a 148 (614)
T KOG0927|consen 75 DVKIESLSLSFH-----GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID-FYLLSREIEPSEKQA 148 (614)
T ss_pred cceeeeeeeccC-----CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc-hhhhcccCCCchHHH
Confidence 588999999984 56899999999999999999999999999999999999877531112 22111111100 000
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHH-Hh-----------------cCCC-ccchHHHHHHHHHHHcCC-chHHhhhhcCCC
Q 006548 184 YGFVERETTLIGSLTVREYLYYSA-LL-----------------QLPG-FFCQRKNVVEDAIHAMSL-SDYANKLIGGHC 243 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~-~~-----------------~~~~-~~~~~~~~v~~~l~~lgL-~~~~~~~ig~~~ 243 (641)
+-++.+ +.-..+.-+.+-. .+ ++.. .....+.++.++|..+|. .+..++.+
T Consensus 149 v~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~---- 219 (614)
T KOG0927|consen 149 VQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKV---- 219 (614)
T ss_pred HHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHh----
Confidence 000000 0000000000000 00 0000 001133456667777765 56777755
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
.+||||+|.|+++||+|..+|++|+|||||+|||..+..-+-+.|.+.-+ + ++|+ +.|+.+.+-.+|.+|+-|.+
T Consensus 220 --~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~-~lVi-~sh~QDfln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 220 --KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-I-ILVI-VSHSQDFLNGVCTNIIHLDN 294 (614)
T ss_pred --hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-c-eEEE-EecchhhhhhHhhhhheecc
Confidence 49999999999999999999999999999999999999988888877532 1 4555 44556789999999999999
Q ss_pred Ce-EEEEeChhHH
Q 006548 324 GN-TLFFGETLAC 335 (641)
Q Consensus 324 G~-iv~~G~~~~~ 335 (641)
++ +.|.|+-++.
T Consensus 295 kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 295 KKLIYYEGNYDQY 307 (614)
T ss_pred cceeeecCCHHHH
Confidence 99 5555665543
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=201.31 Aligned_cols=223 Identities=22% Similarity=0.252 Sum_probs=173.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCC-ceeEEEECCEeC-C----C
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR-MYGEVFVNGAKS-E----M 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~-~~G~I~~~G~~~-~----~ 179 (641)
+.++||+.++... .+..++++++|+++..||+-+++|+||||||-..|+|+|..+.+=. +.....+++.+. + .
T Consensus 4 LDIrnL~IE~~Ts-qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 4 LDIRNLTIEFKTS-QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred ccccceEEEEecC-CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence 5678999888643 3567899999999999999999999999999999999998765311 112334444331 1 1
Q ss_pred C----CceEEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCc---------cchHHHHHHHHHHHcCCchHHhhhhcCCCC
Q 006548 180 P----YGSYGFVERETT--LIGSLTVREYLYYSALLQLPGF---------FCQRKNVVEDAIHAMSLSDYANKLIGGHCY 244 (641)
Q Consensus 180 ~----~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~---------~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 244 (641)
+ .+.+++++|++. +.|.-+|...|.- ..|.. ..-++.+.-++|+.+|+.+..|-.- .+
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq----~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~---SY 155 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQ----NIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR---SY 155 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHh----hCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH---hC
Confidence 1 135788999874 4455455433321 11211 1125667788999999988777653 48
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 245 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
|.+|.-||-|+|.||.|++..|++||.||||+.+|+.++.++.++|.++.+ +|+||+++.|+. ..+.+.||++-||.-
T Consensus 156 P~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d~i~VlYC 234 (330)
T COG4170 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL-QMISQWADKINVLYC 234 (330)
T ss_pred cchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH-HHHHHHhhheEEEEe
Confidence 889999999999999999999999999999999999999999999999985 478888866654 689999999999999
Q ss_pred CeEEEEeChhHHHH
Q 006548 324 GNTLFFGETLACLQ 337 (641)
Q Consensus 324 G~iv~~G~~~~~~~ 337 (641)
|+-++.++.+++++
T Consensus 235 GQ~~ESa~~e~l~~ 248 (330)
T COG4170 235 GQTVESAPSEELVT 248 (330)
T ss_pred cccccccchhHHhc
Confidence 99999999988765
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-24 Score=226.69 Aligned_cols=202 Identities=21% Similarity=0.273 Sum_probs=156.9
Q ss_pred CCceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 006548 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (641)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~ 181 (641)
+++.+.++|+++.|.++ ..++++++|-+.+++.+|++||||||||||||++.|.+.|.. |.|.-.-.
T Consensus 386 p~pvi~~~nv~F~y~~~----~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~---G~vs~~~H------ 452 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDN----PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTI---GMVSRHSH------ 452 (614)
T ss_pred CCCeEEEeccccCCCCc----chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccc---cccccccc------
Confidence 45678999999998632 279999999999999999999999999999999999999875 88764322
Q ss_pred ceEEEEcCC--CccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 182 GSYGFVERE--TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 182 ~~~~yv~Q~--~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
..+++..|+ +.+.-..++-|++.-. .+. ..+.+.+..+|..+||.. ..+. .+++||+|||+||..
T Consensus 453 ~~~~~y~Qh~~e~ldl~~s~le~~~~~----~~~--~~~~e~~r~ilgrfgLtgd~q~~------p~~~LS~Gqr~rVlF 520 (614)
T KOG0927|consen 453 NKLPRYNQHLAEQLDLDKSSLEFMMPK----FPD--EKELEEMRSILGRFGLTGDAQVV------PMSQLSDGQRRRVLF 520 (614)
T ss_pred ccchhhhhhhHhhcCcchhHHHHHHHh----ccc--cchHHHHHHHHHHhCCCcccccc------chhhcccccchhHHH
Confidence 123333333 3344456777776421 111 135677899999999984 4444 345999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE-EEEeCh
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT-LFFGET 332 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i-v~~G~~ 332 (641)
|+.++..|.+|+|||||+|||..+...+-+.|.+. ..++|+++|+- ..|.+++++|.+..+|.+ .+.|+.
T Consensus 521 a~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 521 ARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred HHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechh-hHHHHHHHHhHhhccCceeecCccH
Confidence 99999999999999999999999999988888776 23566667765 589999999999988766 445554
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-23 Score=215.47 Aligned_cols=189 Identities=20% Similarity=0.258 Sum_probs=148.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..++|.++++++. ..-|.--.+.+..||+++++||||-||||+.++|+|.++|++ |+ . ..-.
T Consensus 341 ~lv~y~~~~k~~g------~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPde---g~----~-----~~~~ 402 (591)
T COG1245 341 TLVEYPDLKKTYG------DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDE---GS----E-----EDLK 402 (591)
T ss_pred eeeecchheeecC------ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCC---CC----C-----ccce
Confidence 3466777776663 234566677888899999999999999999999999999986 65 1 1134
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~ 263 (641)
++|-||--.--...||++.|.-....... ..-...++++-+.|++..++.+. +|||||.|||+||.+|.
T Consensus 403 vSyKPQyI~~~~~gtV~~~l~~~~~~~~~-----~s~~~~ei~~pl~l~~i~e~~v~------~LSGGELQRvaIaa~L~ 471 (591)
T COG1245 403 VSYKPQYISPDYDGTVEDLLRSAIRSAFG-----SSYFKTEIVKPLNLEDLLERPVD------ELSGGELQRVAIAAALS 471 (591)
T ss_pred EeecceeecCCCCCcHHHHHHHhhhhhcc-----cchhHHhhcCccchHHHHhcccc------cCCchhHHHHHHHHHhc
Confidence 78888865555678999988543322111 12234678889999999998765 99999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 264 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
.++++.+||||++.||...+..+-+.+++..++ ++|.+++-|+. ..+--++||+++.+
T Consensus 472 reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 472 READLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred cccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce-ehhhhhhceEEEEe
Confidence 999999999999999999999999999999855 67777766654 46667789988764
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-23 Score=212.83 Aligned_cols=177 Identities=16% Similarity=0.138 Sum_probs=117.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-------C-CC--CC--ceEEEEcCCCcc-CCCCCHHHHH
Q 006548 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-------S-EM--PY--GSYGFVERETTL-IGSLTVREYL 203 (641)
Q Consensus 137 e~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~-------~-~~--~~--~~~~yv~Q~~~l-~~~lTV~E~l 203 (641)
.+++|+|||||||||||++|++...+.. |++..++.. . .. .. -.+.|..|++.. .-..++.+..
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~---~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 99 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKS---SHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS 99 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCc---ccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc
Confidence 3999999999999999999999876532 555443311 0 00 01 124454444221 1011111110
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHHcCCchH--------------Hhhhhc--CCCCCCCCCHHHHHHHHHHHHHHhC--
Q 006548 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDY--------------ANKLIG--GHCYMKGLPCGERRRVRIARELVMR-- 265 (641)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~--------------~~~~ig--~~~~~~~LSGGerqRv~IA~aL~~~-- 265 (641)
. ..+.... ....+.++++++.+|+... .+..+. .+..+..||||||||++||++++.+
T Consensus 100 ~---~~~ingk-~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~ 175 (247)
T cd03275 100 S---SYRINGK-VVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSY 175 (247)
T ss_pred e---EEEECCE-EecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhcc
Confidence 0 0011111 1134456788888988422 111100 0113368999999999999999975
Q ss_pred --CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 266 --PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 266 --P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
|+++||||||+|||+..+..+.+.|++++++|.++|+++|++ ++.+.||++++|.
T Consensus 176 ~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~ 232 (247)
T cd03275 176 QPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVY 232 (247)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEE
Confidence 899999999999999999999999999987789999998884 4678999999996
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-22 Score=200.39 Aligned_cols=168 Identities=20% Similarity=0.161 Sum_probs=117.8
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----C--CCCCceEEEEcCCCccCCCCCH
Q 006548 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK----S--EMPYGSYGFVERETTLIGSLTV 199 (641)
Q Consensus 126 L~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~----~--~~~~~~~~yv~Q~~~l~~~lTV 199 (641)
++++++.+.+| +.+|+||||||||||+.+|........ . ....|.. . ......+..++|+..+.++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~---~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKA---S-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN--- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCc---c-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC---
Confidence 35666777777 889999999999999999985432211 0 0001210 0 1122456777776655541
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH----HhCCcEEEEeCCC
Q 006548 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL----VMRPHVLFIDEPL 275 (641)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL----~~~P~iLlLDEPt 275 (641)
+.. ...++.++++++. .+..++ .++.||+|||||++||++| +.+|++++|||||
T Consensus 84 ------------~~~-~~~~~~~~~~l~~---~~~~~~------~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~ 141 (198)
T cd03276 84 ------------PLC-VLSQDMARSFLTS---NKAAVR------DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFD 141 (198)
T ss_pred ------------cCC-HHHHHHHHHHhcc---ccccCC------cccccChhHHHHHHHHHHHHHhcccCCCEEEecCcc
Confidence 000 0123456677766 444444 4569999999999999999 5899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc--C-CEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 276 YHLDSVSALLMMVTLKKLAST--G-CTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 276 sgLD~~~~~~i~~~L~~l~~~--g-~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
+|||..++..+.+.|+++.++ + +||++++|++ +++.++ |+|.+|..|+
T Consensus 142 ~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~-~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 142 VFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI-SGLASS-DDVKVFRMKD 192 (198)
T ss_pred cccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc-cccccc-cceeEEEecC
Confidence 999999999999999998643 3 5788877776 466664 9999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-22 Score=214.54 Aligned_cols=205 Identities=16% Similarity=0.232 Sum_probs=163.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..+++++|++.-++ .+..+++|+|+.|..|+-+.|+||||||||+|||+|+|+.|..+ |++.--... ..+.
T Consensus 432 n~i~~e~v~l~tPt---~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~---G~l~k~~~~---~~~~ 502 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPT---NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTG---GKLTKPTDG---GPKD 502 (659)
T ss_pred ceEEeeeeeecCCC---CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCC---CeEEecccC---CCCc
Confidence 46999999987653 25578899999999999999999999999999999999998654 888754322 1255
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRI 258 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerqRv~I 258 (641)
+-|+||.|.+- ..|.||-+.|+..--.+......++++.+.|+.++|.++.++.-|-+ ++...||+||+||++.
T Consensus 503 lfflPQrPYmt-~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ 581 (659)
T KOG0060|consen 503 LFFLPQRPYMT-LGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAF 581 (659)
T ss_pred eEEecCCCCcc-ccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHH
Confidence 89999999754 55999999886322111111225678999999999999988754422 2446699999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
||.+.++|++-||||-||++|......+.+.+++ .|.|.|-+.|..+ ..++-|.++-|+.
T Consensus 582 ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 582 ARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 9999999999999999999999999998888776 5889888888764 5677788888874
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.8e-21 Score=181.92 Aligned_cols=210 Identities=20% Similarity=0.264 Sum_probs=160.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..+++.++.|+|+. ..+++-|+|+.++.|..+.++|.||||||||||+|+|-.-... |.|.++|.+.-.
T Consensus 12 ~aievsgl~f~y~~----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~---~~v~VlgrsaFhDt~l 84 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG---GVVQVLGRSAFHDTSL 84 (291)
T ss_pred ceEEEeccEEeccc----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccC---CeEEEcCcCccccccc
Confidence 46899999999963 4589999999999999999999999999999999999765543 899999975311
Q ss_pred -CCceEEEEcC----------CCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCC
Q 006548 180 -PYGSYGFVER----------ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (641)
Q Consensus 180 -~~~~~~yv~Q----------~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~L 248 (641)
......|+-- +-.+...+++.+-| |+. ... .-++-+++++.+.++- .++.+.+
T Consensus 85 ~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV----~g~---dp~Rre~LI~iLDIdl--------~WRmHkv 148 (291)
T KOG2355|consen 85 ESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGV----GGD---DPERREKLIDILDIDL--------RWRMHKV 148 (291)
T ss_pred cccCceeEecccccccccccccccccccccHHHHH-hhc----cCC---ChhHhhhhhhheeccc--------eEEEeec
Confidence 0112333321 22233456666544 321 111 1244566666666531 2456789
Q ss_pred CHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 006548 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (641)
Q Consensus 249 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (641)
|-|||+||.|++-|+..=++|+|||-|--||..++..+++.+++-.++ |.||+..+|-- +-......+++.+++|+++
T Consensus 149 SDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF-DGLe~Wpthl~yi~~Gkl~ 227 (291)
T KOG2355|consen 149 SDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF-DGLETWPTHLVYIKSGKLV 227 (291)
T ss_pred cccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec-cchhhcchhEEEecCCeee
Confidence 999999999999999999999999999999999999999999998854 89999988875 4678889999999999998
Q ss_pred EEeChhHHHH
Q 006548 328 FFGETLACLQ 337 (641)
Q Consensus 328 ~~G~~~~~~~ 337 (641)
-.-+.+++.+
T Consensus 228 ~~l~~~~i~e 237 (291)
T KOG2355|consen 228 DNLKYQKIKE 237 (291)
T ss_pred eccccchhhh
Confidence 7655544433
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-21 Score=208.72 Aligned_cols=202 Identities=21% Similarity=0.219 Sum_probs=138.9
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 006548 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~ 182 (641)
+..|...++++.| +.+.+|++-++++..|...+|+|+||+|||||||+|+. |.|..-..+ ...+
T Consensus 78 ~~Di~~~~fdLa~-----G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f~ve--qE~~ 141 (582)
T KOG0062|consen 78 SKDIHIDNFDLAY-----GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGFHVE--QEVR 141 (582)
T ss_pred ccceeeeeeeeee-----cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCccCch--hhee
Confidence 3468899999988 45689999999999999999999999999999999986 223222211 0000
Q ss_pred eEEEEcCC-CccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 183 SYGFVERE-TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 183 ~~~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
-.+++-. +.+....++.+-+.-...+... ....+...++|..+|..+ ...+ ..+.||||-|-|+++||
T Consensus 142 -g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~---~~l~ei~~~~L~glGFt~emq~~------pt~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 142 -GDDTEALQSVLESDTERLDFLAEEKELLAG---LTLEEIYDKILAGLGFTPEMQLQ------PTKSLSGGWRMRLALAR 211 (582)
T ss_pred -ccchHHHhhhhhccHHHHHHHHhhhhhhcc---chHHHHHHHHHHhCCCCHHHHhc------cccccCcchhhHHHHHH
Confidence 1122211 1222233333333211111100 012333444888999864 4444 34599999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE-EEEeChhH
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT-LFFGETLA 334 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i-v~~G~~~~ 334 (641)
||..+|+||+|||||+.||..+..=+.+.|+.+. .|+|+++|+ +...-..|..|+.+++-++ .|.|+-++
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~---~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~ 282 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK---ITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQ 282 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC---ceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHH
Confidence 9999999999999999999999988888887763 688886665 5688888988888887665 34455443
|
|
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.3e-23 Score=201.76 Aligned_cols=203 Identities=25% Similarity=0.370 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHHHHhhChHHH-HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHhhH
Q 006548 433 TRVAVLTWRSLLIMSREWKYY-WLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGV-PALMKEI 510 (641)
Q Consensus 433 ~Q~~~l~~R~~~~~~Rd~~~~-~~r~~~~~~~~l~~G~~f~~l~~~~~~~~~r~g~lff~~~~~~~~~~~~v-~~~~~er 510 (641)
+|++.+++|+++..+|||.+. ..+++..++.++++|.+|.++++..+++ ++.|.+++.+.+..+...... .....||
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999999555555 788888888888876665554 7788899
Q ss_pred hHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 006548 511 KTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKD 590 (641)
Q Consensus 511 ~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~sl~~~i~~~~~~ 590 (641)
..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +|+.+++.+.++.+++.++|.+++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999988 77888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 591 VYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 591 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
...+..+.+.+..++++++|.+.+.+.+|+ |..|+.|+||++|++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~--~~~~i~~~~P~~~~~~~~ 205 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPS--WLRWISYLNPLTYAVEAL 205 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChH--HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999984 666799999999999986
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.9e-21 Score=197.97 Aligned_cols=193 Identities=23% Similarity=0.306 Sum_probs=149.9
Q ss_pred CCceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 006548 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (641)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~ 181 (641)
.++.+-++||+|.|+ +.++++++++|-|.-...+||+||||.||||||++|.|-+.|+. |+..-| .+
T Consensus 583 ~PPvLGlH~VtFgy~----gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~---GE~RKn------hr 649 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP----GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPND---GELRKN------HR 649 (807)
T ss_pred CCCeeecccccccCC----CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCc---chhhcc------ce
Confidence 345789999999996 35679999999999999999999999999999999999999875 765433 22
Q ss_pred ceEEEEcCC--CccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 182 GSYGFVERE--TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 182 ~~~~yv~Q~--~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
-+||+..|+ ..|...-|..|.|.-. +.+| .+..+..|-.+||...+++. .+..||||||-||++|
T Consensus 650 L~iG~FdQh~~E~L~~Eetp~EyLqr~--FNlp------yq~ARK~LG~fGL~sHAHTi-----kikdLSGGQKaRVala 716 (807)
T KOG0066|consen 650 LRIGWFDQHANEALNGEETPVEYLQRK--FNLP------YQEARKQLGTFGLASHAHTI-----KIKDLSGGQKARVALA 716 (807)
T ss_pred eeeechhhhhHHhhccccCHHHHHHHh--cCCC------hHHHHHHhhhhhhhhccceE-----eeeecCCcchHHHHHH
Confidence 368888885 3455566777776432 1222 24466788999998877764 4679999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (641)
.--+..|+||||||||++||..+...+.+.|++.. | .||+++|+.. .+.+.--.++|+.+-
T Consensus 717 eLal~~PDvlILDEPTNNLDIESIDALaEAIney~--G-gVi~VsHDeR-Li~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 717 ELALGGPDVLILDEPTNNLDIESIDALAEAINEYN--G-GVIMVSHDER-LIVETDCNLWVVENQ 777 (807)
T ss_pred HHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc--C-cEEEEecccc-eeeecCceEEEEccC
Confidence 99999999999999999999999999999888863 3 4666678764 444444456666543
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-20 Score=187.53 Aligned_cols=146 Identities=17% Similarity=0.140 Sum_probs=108.5
Q ss_pred eeceeeEEeCCc-EEEEECCCCCcHHHHHHHHH--------cCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCC
Q 006548 126 VKSSNGYALPGT-MTVIMGPAKSGKSTLLRAIA--------GRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGS 196 (641)
Q Consensus 126 L~~vs~~i~~Ge-~~aIiGpsGsGKSTLl~~La--------G~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~ 196 (641)
.-++|+++.+|+ +++|+||||||||||||+|+ |..-|.. . ...++|..|...
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~---~------------~~~~~~~~~~~~---- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAA---E------------GSSLPVFENIFA---- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccc---c------------cccCcCccEEEE----
Confidence 456788888995 89999999999999999998 4322210 0 011223222211
Q ss_pred CCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCC
Q 006548 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (641)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPts 276 (641)
.++..+..+. ....+|+||||++.|++++ .+|+++++|||++
T Consensus 78 -------------------------------~lg~~~~l~~------~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~ 119 (200)
T cd03280 78 -------------------------------DIGDEQSIEQ------SLSTFSSHMKNIARILQHA-DPDSLVLLDELGS 119 (200)
T ss_pred -------------------------------ecCchhhhhc------CcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCC
Confidence 1111112222 2348999999999999884 8999999999999
Q ss_pred CCCHHHHHHHH-HHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 277 HLDSVSALLMM-VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 277 gLD~~~~~~i~-~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|||+.....+. ..++.+.+.|.++|+++|++ ++.++||++.+|++|++++++
T Consensus 120 glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 120 GTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 99999999996 47888877789999988863 678999999999999998874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-20 Score=199.03 Aligned_cols=199 Identities=20% Similarity=0.236 Sum_probs=156.1
Q ss_pred CCceEEEEeEEEEEeccccccc-ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC
Q 006548 102 AGASVVWKDLTVTIKGKRRYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180 (641)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~ 180 (641)
.++.+.+.+|++.|.. +. +++.+++..++.-..++++|+||+||||++|++.|-..|.. |-+.+++
T Consensus 359 ~~p~l~i~~V~f~y~p----~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~r---gi~~~~~------ 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTP----SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTR---GIVGRHP------ 425 (582)
T ss_pred CCCeeEEEeeeccCCC----cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccc---ceeeecc------
Confidence 4567999999988853 22 79999999999999999999999999999999999777654 7776654
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
+.+++|-.|...=+-.+.|.+.-... .. .|+. .++.+++-+..+||+ +.+... +.+||||||=||++|
T Consensus 426 r~ri~~f~Qhhvd~l~~~v~~vd~~~-~~-~pG~---~~ee~r~hl~~~Gl~g~la~~s------i~~LSGGQKsrvafA 494 (582)
T KOG0062|consen 426 RLRIKYFAQHHVDFLDKNVNAVDFME-KS-FPGK---TEEEIRRHLGSFGLSGELALQS------IASLSGGQKSRVAFA 494 (582)
T ss_pred cceecchhHhhhhHHHHHhHHHHHHH-Hh-CCCC---CHHHHHHHHHhcCCCchhhhcc------ccccCCcchhHHHHH
Confidence 35688888865433344444432222 22 2222 456688899999996 455543 458999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
.....+|.+|+|||||+.||-.+-..+.+.|+.. +| .||+++|+. +.+...|+.+++.++|++.-
T Consensus 495 ~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~G-GVv~VSHd~-~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 495 ACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NG-GVVLVSHDE-EFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc--CC-cEEEEECcH-HHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999999998887 34 456656664 68999999999999999864
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-20 Score=186.55 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=68.9
Q ss_pred CCCCCCHHHHHHHHHHHHH----HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C-CEEEEEEeCChHHHHhcCC-
Q 006548 244 YMKGLPCGERRRVRIAREL----VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-G-CTLLFTINQSSTEVFGLFD- 316 (641)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL----~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g-~tvi~t~h~~~~~i~~~~D- 316 (641)
.+.+||||||||+.++++| +.+|+++++||||+|||+.++..+++.|++++++ | .++|+++||.. ++.+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCc
Confidence 4569999999999877654 4799999999999999999999999999999866 5 57888888864 4556666
Q ss_pred -EEEEEeCCeE
Q 006548 317 -RICLLSNGNT 326 (641)
Q Consensus 317 -~v~vL~~G~i 326 (641)
+|++|++|+-
T Consensus 202 ~~v~~l~~g~~ 212 (213)
T cd03277 202 MTVLCVYNGPH 212 (213)
T ss_pred eEEEEEecCcc
Confidence 7888888873
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.8e-20 Score=193.11 Aligned_cols=170 Identities=24% Similarity=0.300 Sum_probs=128.0
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCC-------CCCceEEEEcCC----
Q 006548 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSE-------MPYGSYGFVERE---- 190 (641)
Q Consensus 133 i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~-----------~~G~~~~-------~~~~~~~yv~Q~---- 190 (641)
.++|++++|+|+||-||||-+|+|+|.+.|+- |+-. +.|...+ ....++..-+|-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNL---G~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNL---GRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCC---CCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHH
Confidence 34899999999999999999999999998874 4321 1111000 000112222232
Q ss_pred CccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEE
Q 006548 191 TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLF 270 (641)
Q Consensus 191 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLl 270 (641)
+..+ .-||.|.|.-. ..+...+++++.++|.+..|+-+. +|||||-||++||.+++++.++++
T Consensus 174 Pk~~-KG~v~elLk~~----------de~g~~devve~l~L~nvl~r~v~------~LSGGELQr~aIaa~l~rdADvY~ 236 (591)
T COG1245 174 PKVV-KGKVGELLKKV----------DERGKFDEVVERLGLENVLDRDVS------ELSGGELQRVAIAAALLRDADVYF 236 (591)
T ss_pred HHHh-cchHHHHHHhh----------hhcCcHHHHHHHhcchhhhhhhhh------hcCchHHHHHHHHHHHhccCCEEE
Confidence 2222 23666665311 122357899999999999999776 999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 271 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 271 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
+|||||-||...+..+.+.+++|++.+++||++-|+. .-+--++|-|.++..
T Consensus 237 FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 237 FDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred EcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechH-HHHHHhhheeEEEec
Confidence 9999999999999999999999998899999976664 456667999998864
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-19 Score=184.87 Aligned_cols=186 Identities=27% Similarity=0.356 Sum_probs=138.3
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-----CCceeEEEECCEeCCCCCceEEEEcCCC-ccCC
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-----ARMYGEVFVNGAKSEMPYGSYGFVERET-TLIG 195 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~-----~~~~G~I~~~G~~~~~~~~~~~yv~Q~~-~l~~ 195 (641)
...+|+|+|+.++||++++|+|+|||||||||++|+|..... ...+|.|.+--.. ..+.+|-+. .-|.
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt------~~a~iPge~Ep~f~ 468 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT------VSALIPGEYEPEFG 468 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc------hhhccCcccccccC
Confidence 457999999999999999999999999999999999974321 0124666553211 122333321 1223
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCC
Q 006548 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275 (641)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPt 275 (641)
.-|+.|.+.- .++ +-....++|...||.+..-. -....+||-|||.|+.||.++..+|.+++.||-.
T Consensus 469 ~~tilehl~s-----~tG----D~~~AveILnraGlsDAvly----Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~ 535 (593)
T COG2401 469 EVTILEHLRS-----KTG----DLNAAVEILNRAGLSDAVLY----RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFA 535 (593)
T ss_pred chhHHHHHhh-----ccC----chhHHHHHHHhhccchhhhh----hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhh
Confidence 4566666621 111 22346789999999753322 1245699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhc-CCEEEEEeCCeEE
Q 006548 276 YHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGL-FDRICLLSNGNTL 327 (641)
Q Consensus 276 sgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv 327 (641)
|.||..++..+.+-|.+++++ |.|+++++|+|. .+-++ -|+++++.-|++.
T Consensus 536 AhLD~~TA~rVArkiselaRe~giTlivvThrpE-v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 536 AHLDELTAVRVARKISELAREAGITLIVVTHRPE-VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHhccCCceeEEeeccccc
Confidence 999999999999999999955 999999999984 56666 7888888766553
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.1e-19 Score=170.87 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHHH----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 248 LPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 248 LSGGerqRv~IA~aL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
||||||||++||++|+ .+|+++++|||+++||+..+..+.+.|++++++|.++|+++|++. ....+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999997 699999999999999999999999999999877899999999863 4568999999974
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-19 Score=191.95 Aligned_cols=186 Identities=20% Similarity=0.250 Sum_probs=142.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.+.++|+-+-.+ ....++..++|.+++|-.+.|+||||||||+|+++|.|+.|-.. |...+ .+..++
T Consensus 481 gI~lenIpvItP----~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~---g~L~~------P~~~~m 547 (728)
T KOG0064|consen 481 GIILENIPVITP----AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYN---GLLSI------PRPNNI 547 (728)
T ss_pred ceEEecCceecc----CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccC---Ceeec------CCCcce
Confidence 478888876554 34568999999999999999999999999999999999998642 54432 233468
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC----CCCCCCHHHHHHHHHHH
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC----YMKGLPCGERRRVRIAR 260 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~----~~~~LSGGerqRv~IA~ 260 (641)
-|+||.+.+- ..|.+|.+.|+-...--....-.++..+.+|+.+.|++.+.+-.| -+ +..-||||||||+++||
T Consensus 548 FYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g-~da~~dWkd~LsgGekQR~~mAR 625 (728)
T KOG0064|consen 548 FYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGG-WDAVRDWKDVLSGGEKQRMGMAR 625 (728)
T ss_pred EeccCCCccC-cCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccC-hhhhccHHhhccchHHHHHHHHH
Confidence 9999998765 567888775531100000000134567889999999988877543 22 33459999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (641)
.+-++|+.-+|||-||+..+.....+.+..++ -|.+.+-++|+|+
T Consensus 626 m~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps 670 (728)
T KOG0064|consen 626 MFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS 670 (728)
T ss_pred HHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc
Confidence 99999999999999999999888888887766 4889999999996
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.3e-19 Score=174.65 Aligned_cols=147 Identities=18% Similarity=0.140 Sum_probs=102.4
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHH
Q 006548 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (641)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (641)
.+++|+++. +|++++|+||||||||||+|+|+|...- ...|.+... + .+++|.+.+++.+|+.|++
T Consensus 15 ~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~l--------~~~G~~v~a--~--~~~~q~~~l~~~~~~~d~l 80 (199)
T cd03283 15 RVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVIL--------AQAGAPVCA--S--SFELPPVKIFTSIRVSDDL 80 (199)
T ss_pred eecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHHH--------HHcCCEEec--C--ccCcccceEEEeccchhcc
Confidence 466776655 4799999999999999999999985421 112332211 1 2556777889999999999
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHH
Q 006548 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (641)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~ 283 (641)
.++.. ......+++.++++.+++ .+|+++++||||+|||+...
T Consensus 81 ~~~~s-----~~~~e~~~~~~iL~~~~~--------------------------------~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 81 RDGIS-----YFYAELRRLKEIVEKAKK--------------------------------GEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred ccccC-----hHHHHHHHHHHHHHhccC--------------------------------CCCeEEEEecccCCCCHHHH
Confidence 76421 111122345555555431 69999999999999999999
Q ss_pred HHHH-HHHHHHHHcCCEEEEEEeCChHHHHhc--CCEEEEEe
Q 006548 284 LLMM-VTLKKLASTGCTLLFTINQSSTEVFGL--FDRICLLS 322 (641)
Q Consensus 284 ~~i~-~~L~~l~~~g~tvi~t~h~~~~~i~~~--~D~v~vL~ 322 (641)
..+. ..++++.+.|.++|+++|++. .+..+ .++|-.++
T Consensus 124 ~~l~~~ll~~l~~~~~tiiivTH~~~-~~~~~~~~~~v~~~~ 164 (199)
T cd03283 124 QAASAAVLKFLKNKNTIGIISTHDLE-LADLLDLDSAVRNYH 164 (199)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCcHH-HHHhhhcCCCeEEEE
Confidence 8775 478888877899999998874 45444 44555443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-17 Score=203.77 Aligned_cols=128 Identities=18% Similarity=0.252 Sum_probs=101.8
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC---CcEEEEe
Q 006548 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR---PHVLFID 272 (641)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~---P~iLlLD 272 (641)
.|||.|.+.|... . .+-.+.-+.|+.+||.-+.= ......|||||.||+-||..|..+ +.+++||
T Consensus 1660 ~mtv~ea~~~F~~------~-~~i~~~L~~L~~vGLgYl~L-----Gq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilD 1727 (1809)
T PRK00635 1660 QTPIEEVAETFPF------L-KKIQKPLQALIDNGLGYLPL-----GQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLD 1727 (1809)
T ss_pred cCCHHHHHHHhhc------c-HHHHHHHHHHHHcCCCeeeC-----CCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEc
Confidence 4677777665421 0 12234456788888864421 224458999999999999999876 7899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe------CCeEEEEeChhHHHH
Q 006548 273 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS------NGNTLFFGETLACLQ 337 (641)
Q Consensus 273 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~------~G~iv~~G~~~~~~~ 337 (641)
|||+||++.....+++.|++|.+.|.|||++-|++ ++.+.||.|+-|- .|+||+.|+|+++.+
T Consensus 1728 EPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1728 EIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999999999999999987776 4667799999983 479999999999865
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.9e-18 Score=176.82 Aligned_cols=76 Identities=20% Similarity=0.161 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHHHh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 247 GLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
.||||||||+++|++++. +|+++++||||++||+.++..+.+.|+++.+ +.|+|+++|++. +...||++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997664 9999999999999999999999999999864 689999999874 568999999998
Q ss_pred CCe
Q 006548 323 NGN 325 (641)
Q Consensus 323 ~G~ 325 (641)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=185.00 Aligned_cols=128 Identities=22% Similarity=0.270 Sum_probs=100.8
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCC---cEEEEe
Q 006548 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRP---HVLFID 272 (641)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P---~iLlLD 272 (641)
.|||.|...|.... ..-.+.-+.|..+||.-.. . ......|||||.|||-+|.+|..+. -+.+||
T Consensus 783 ~MTveEA~~FF~~~-------p~I~rkLqtL~dVGLgYi~---L--GQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLD 850 (935)
T COG0178 783 DMTVEEALEFFEAI-------PKIARKLQTLVDVGLGYIK---L--GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILD 850 (935)
T ss_pred hccHHHHHHHHhcc-------hHHHHHHHHHHHcCcceEe---c--CCccccccchHHHHHHHHHHHhhccCCCeEEEeC
Confidence 36666666654311 1122344566677775322 1 2244589999999999999999887 899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHHH
Q 006548 273 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (641)
Q Consensus 273 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (641)
|||+||-.....++++.|.+|.+.|-|||++-|.. ++.+.||.|+=| ..|+||+.|+|+++.+
T Consensus 851 EPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 851 EPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999999999999999999999999999966654 688999999998 3589999999999875
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-18 Score=162.28 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHHHh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 247 GLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
+||+||+||++||++|.. +|+++|+|||++|+|+.....+.+.+.++.++|.++|+++|++ ++.+.+|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 599999999999999997 7899999999999999999999999999876688999988887 3456799999986
Q ss_pred C
Q 006548 323 N 323 (641)
Q Consensus 323 ~ 323 (641)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-18 Score=171.87 Aligned_cols=152 Identities=21% Similarity=0.237 Sum_probs=112.7
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE-EEcCCCccCCCCCHHH
Q 006548 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG-FVERETTLIGSLTVRE 201 (641)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~E 201 (641)
+.+.+|+++...+|++++|.||||+|||||++.++-.. + ..++| |||.+...++
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~-----------~--------la~~g~~vpa~~~~~~------ 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV-----------L--------MAQIGCFVPCDSADIP------ 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH-----------H--------HHHhCCCcCcccEEEe------
Confidence 45788899999899999999999999999999987210 0 01122 3333321111
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH--HhCCcEEEEeCC---CC
Q 006548 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL--VMRPHVLFIDEP---LY 276 (641)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL--~~~P~iLlLDEP---ts 276 (641)
.++++++.+++.+... +++|.|+++++.+++++ +.+|+++||||| |+
T Consensus 72 -------------------~~~~il~~~~l~d~~~---------~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~ 123 (222)
T cd03285 72 -------------------IVDCILARVGASDSQL---------KGVSTFMAEMLETAAILKSATENSLIIIDELGRGTS 123 (222)
T ss_pred -------------------ccceeEeeeccccchh---------cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCC
Confidence 1234455556553332 38999999999999999 899999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 277 HLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
+||+..... ..++.+.+ .|.++|+++|. .++.++||++..+++|++...+.
T Consensus 124 ~lD~~~~~~--~il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 124 TYDGFGLAW--AIAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred hHHHHHHHH--HHHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999888754 33455554 48899998885 57889999999999999988764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-17 Score=195.30 Aligned_cols=134 Identities=20% Similarity=0.245 Sum_probs=108.9
Q ss_pred CCCCHHHHHHHHHHhcCCCcc--------chHHHHHHHHHHHcCCchH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC
Q 006548 195 GSLTVREYLYYSALLQLPGFF--------CQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (641)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~--------~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (641)
..+||.|.+.|...+..+... .+..++++ .|+.+||.++ .++.+ ..|||||||||.||++|..+
T Consensus 435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~------~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA------GTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch------hhCCHHHHHHHHHHHHHhhC
Confidence 468999999885544332210 01233443 6788888765 56655 49999999999999999999
Q ss_pred C--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHHH
Q 006548 266 P--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (641)
Q Consensus 266 P--~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (641)
| ++++|||||+|||+..+..+++.|++++++|.|||+++|++. ++ ..||+|++| ++|++++.|+++++..
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 7 999999999999999999999999999988999999988874 55 469999999 9999999999988753
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-18 Score=168.89 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=102.1
Q ss_pred eeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHH
Q 006548 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSAL 208 (641)
Q Consensus 130 s~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~-~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~ 208 (641)
++.+.+|++++|+|||||||||||++|++..- .. .|... ......+++..| ++..+...+++
T Consensus 23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~---~g~~~------~~~~~~i~~~dq---i~~~~~~~d~i----- 85 (202)
T cd03243 23 DINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQ---IGCFV------PAESASIPLVDR---IFTRIGAEDSI----- 85 (202)
T ss_pred eEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHH---cCCCc------cccccccCCcCE---EEEEecCcccc-----
Confidence 44455899999999999999999999995421 11 12111 001112333222 11111111111
Q ss_pred hcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHH
Q 006548 209 LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 288 (641)
Q Consensus 209 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~ 288 (641)
+. ....++++++ |+..+.+++.+|+++|+||||+|||+.....+..
T Consensus 86 ---------------------------~~------~~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 86 ---------------------------SD------GRSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred ---------------------------cC------CceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 01 1225565555 4666678889999999999999999998888765
Q ss_pred -HHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 289 -TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 289 -~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
+++.+.+.+.++|+++|++ ++.+.+|++..++.|++...++..+.
T Consensus 132 ~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 132 AVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCee
Confidence 5677777788999988864 56778999999999999988875443
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-17 Score=191.46 Aligned_cols=133 Identities=20% Similarity=0.237 Sum_probs=105.4
Q ss_pred CCCCHHHHHHHHHHhcCCCccch--------HHHHHHHHHHHcCCchH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC
Q 006548 195 GSLTVREYLYYSALLQLPGFFCQ--------RKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (641)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~--------~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (641)
-.|||.|.+.|...+........ ..+++ +.+..+||... .++. +.+|||||+|||.||++|+.+
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~------~~tLSGGE~QRv~LA~aL~~~ 505 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRA------AGTLSGGEAQRIRLATQIGSG 505 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCC------cCcCCHHHHHHHHHHHHHhhC
Confidence 36899999887655433211000 11122 33666777654 4554 459999999999999999998
Q ss_pred C--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHH
Q 006548 266 P--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACL 336 (641)
Q Consensus 266 P--~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~ 336 (641)
| +++||||||+|||+.....+++.|++++++|.|||+++|++. .+ ..||+|++| ++|++++.|+++++.
T Consensus 506 ~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 506 LTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 6 899999999999999999999999999988999999888864 55 589999999 899999999998874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-18 Score=179.32 Aligned_cols=206 Identities=22% Similarity=0.288 Sum_probs=143.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC---CCCCCCceeEEEECCEeCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR---LPHSARMYGEVFVNGAKSE-- 178 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~---~~~~~~~~G~I~~~G~~~~-- 178 (641)
+.|.++|.+.+- .++.++.|-|+.|-.|..++++||||-||||||+.|+.+ +||. =+|++..+.+.
T Consensus 263 ~DIKiEnF~ISA-----~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn----IDvLlCEQEvvad 333 (807)
T KOG0066|consen 263 MDIKIENFDISA-----QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN----IDVLLCEQEVVAD 333 (807)
T ss_pred ccceeeeeeeec-----ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC----CceEeeeeeeeec
Confidence 457778777665 356789999999999999999999999999999999987 4554 23444433210
Q ss_pred ----------CCCceEEEEcCCCc-----cCCCCCHHHHHHHHH-HhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcC
Q 006548 179 ----------MPYGSYGFVERETT-----LIGSLTVREYLYYSA-LLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGG 241 (641)
Q Consensus 179 ----------~~~~~~~yv~Q~~~-----l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~ 241 (641)
...++...+..++. --...|+.|-+.-.+ .++.-+. ...+.+.+.+|.-+|.+. ..++
T Consensus 334 ~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA-~sAEarARRILAGLGFskEMQ~r---- 408 (807)
T KOG0066|consen 334 STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGA-DSAEARARRILAGLGFSKEMQER---- 408 (807)
T ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcc-ccchhHHHHHHhhcCCChhHhcC----
Confidence 00011111111111 112345555553211 1221111 113456777888888864 3444
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 006548 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (641)
Q Consensus 242 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (641)
+...+|||-|-||++||||..+|-+|.|||||++||..+..-+-+.|+.+.+ |.++++|+. ..+-..|..|+.|
T Consensus 409 --Pt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkK---TLLIVSHDQ-gFLD~VCtdIIHL 482 (807)
T KOG0066|consen 409 --PTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQ-GFLDSVCTDIIHL 482 (807)
T ss_pred --CccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhh---eeEEEeccc-chHHHHHHHHhhh
Confidence 2348999999999999999999999999999999999988888888888864 788877776 5788999999999
Q ss_pred eCCeEEEE
Q 006548 322 SNGNTLFF 329 (641)
Q Consensus 322 ~~G~iv~~ 329 (641)
++-++-|+
T Consensus 483 D~qkLhyY 490 (807)
T KOG0066|consen 483 DNQKLHYY 490 (807)
T ss_pred hhhhhhhh
Confidence 98887554
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.3e-16 Score=160.02 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=63.9
Q ss_pred CCCCCHHHHHHHHHHHHHH---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcC
Q 006548 245 MKGLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315 (641)
Q Consensus 245 ~~~LSGGerqRv~IA~aL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~ 315 (641)
..-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. .+++++||.. .+..+|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~-~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLA-DFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCch-hccchh
Confidence 3458999999999999985 7999999999999999999999999998753 3455566653 566677
Q ss_pred ---CEEEEEeCCeE
Q 006548 316 ---DRICLLSNGNT 326 (641)
Q Consensus 316 ---D~v~vL~~G~i 326 (641)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.3e-16 Score=154.71 Aligned_cols=156 Identities=18% Similarity=0.145 Sum_probs=106.3
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHH
Q 006548 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (641)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (641)
.+.+|+++..++ ++++|+||||||||||||.+++..-. |+ .|.........++++.| +++.+++.|++
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~~~~~i~~~~~---i~~~~~~~~~l 86 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPASKAEIGVVDR---IFTRIGASDDL 86 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeeccccceecceee---EeccCCchhhh
Confidence 467778877776 89999999999999999999875321 21 12222222345666654 66777887777
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCH--HHHHHHHHHHHHHhCCcEEEEeCC---CCCC
Q 006548 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC--GERRRVRIARELVMRPHVLFIDEP---LYHL 278 (641)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG--GerqRv~IA~aL~~~P~iLlLDEP---tsgL 278 (641)
..+ .|. .|+++++-+...+.+|++++|||| |++|
T Consensus 87 s~g-----------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~l 125 (216)
T cd03284 87 AGG-----------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTY 125 (216)
T ss_pred ccC-----------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChH
Confidence 431 111 123333333344579999999999 8888
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 279 DSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 279 D~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|.... ....++.+.+. +.++|+++|+. ++.+++|++..+.+|++...+..+++.
T Consensus 126 D~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 126 DGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred HHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 87542 34455556655 88999988884 678889998888899988877766543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-15 Score=151.38 Aligned_cols=136 Identities=19% Similarity=0.205 Sum_probs=96.0
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (641)
++.+.+|+++..++|++++|+||||+|||||+++++++.-- +++ | .|| +...+.+++.|
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a~~---G----------~~v---pa~~~~l~~~d 73 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-----AQI---G----------CFV---PAEYATLPIFN 73 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HHc---C----------CCc---chhhcCccChh
Confidence 34688999999999999999999999999999999986311 111 1 111 22234556666
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHH
Q 006548 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (641)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~ 281 (641)
++.. .++..+..++. ...+|+|++|+ ..+.+++.+|++++||||++|+|+.
T Consensus 74 ~I~~----------------------~~~~~d~~~~~------~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~ 124 (204)
T cd03282 74 RLLS----------------------RLSNDDSMERN------LSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSA 124 (204)
T ss_pred heeE----------------------ecCCccccchh------hhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHH
Confidence 6632 11221112221 23789999875 5556788999999999999999997
Q ss_pred HHHHH-HHHHHHHHHcCCEEEEEEeCC
Q 006548 282 SALLM-MVTLKKLASTGCTLLFTINQS 307 (641)
Q Consensus 282 ~~~~i-~~~L~~l~~~g~tvi~t~h~~ 307 (641)
....+ ...++.+.+.|.++|+++|..
T Consensus 125 ~~~~l~~~il~~l~~~~~~~i~~TH~~ 151 (204)
T cd03282 125 DGFAISLAILECLIKKESTVFFATHFR 151 (204)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEECChH
Confidence 76665 456778887899999988875
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.3e-15 Score=153.70 Aligned_cols=177 Identities=24% Similarity=0.295 Sum_probs=133.4
Q ss_pred cceeeceeeEEeCC-----cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCC
Q 006548 123 DKVVKSSNGYALPG-----TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSL 197 (641)
Q Consensus 123 ~~iL~~vs~~i~~G-----e~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~l 197 (641)
++.+.+..+.++.| |++..+|+||.|||||+++++|+++|+. .|+|- .-.++|=+|...-=...
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~--~~e~p---------~lnVSykpqkispK~~~ 417 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE--GGEIP---------VLNVSYKPQKISPKREG 417 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCc--cCccc---------ccceeccccccCccccc
Confidence 34555566666655 5899999999999999999999999875 24332 23467777765444567
Q ss_pred CHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCC
Q 006548 198 TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYH 277 (641)
Q Consensus 198 TV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsg 277 (641)
||++.+.--. + .. -.....+.++++-+.+++..|+-+. +|||||.|||+||..|=..+++.+.|||.+-
T Consensus 418 tvR~ll~~kI--r--~a-y~~pqF~~dvmkpL~ie~i~dqevq------~lSggelQRval~KOGGKpAdvYliDEpsAy 486 (592)
T KOG0063|consen 418 TVRQLLHTKI--R--DA-YMHPQFVNDVMKPLQIENIIDQEVQ------GLSGGELQRVALALCLGKPADVYLIDEPSAY 486 (592)
T ss_pred hHHHHHHHHh--H--hh-hcCHHHHHhhhhhhhHHHHHhHHhh------cCCchhhHHHHHHHhcCCCCceEEecCchhh
Confidence 8998774321 1 00 0134567889999999999988665 9999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 278 LDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 278 LD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
||+..+..--+.+++.- +.++|-.++-|+- .-.--++|||++..
T Consensus 487 lDSeQRi~AskvikRfilhakktafvVEhdf-ImaTYladrvivf~ 531 (592)
T KOG0063|consen 487 LDSEQRIIASKVIKRFILHAKKTAFVVEHDF-IMATYLADRVIVFE 531 (592)
T ss_pred cChHHHHHHHHHHHHHHHhccchhhhhhhHH-HHHHhhcceeEEEe
Confidence 99999999999999976 5567777766653 23335789987653
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=150.01 Aligned_cols=138 Identities=25% Similarity=0.261 Sum_probs=92.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--C----ceEEEEcCCCccCCCCCHHHHHHHHHHhc
Q 006548 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--Y----GSYGFVERETTLIGSLTVREYLYYSALLQ 210 (641)
Q Consensus 137 e~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--~----~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (641)
.-++|+||||||||||+++|+|.++++. |+|.++|++.... . ..+++++|.+ +.+.++|.|+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~---G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGI---SQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCC---ceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch------
Confidence 5789999999999999999999999875 9999999875311 1 2345666644 333444444320
Q ss_pred CCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 006548 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290 (641)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L 290 (641)
+. + | .....+..+|+++++|||++ ...+..++
T Consensus 182 -------k~---~---------------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 182 -------KA---E---------------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred -------HH---H---------------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 00 0 1 12223336999999999974 33444555
Q ss_pred HHHHHcCCEEEEEEeCChHH-H-----------HhcCCEEEEEeCCeEEEEeChhHH
Q 006548 291 KKLASTGCTLLFTINQSSTE-V-----------FGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 291 ~~l~~~g~tvi~t~h~~~~~-i-----------~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
+.+ ++|.++|+++|.+..+ + ..+|||+++|++|+ ..|.++++
T Consensus 214 ~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 214 EAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 554 4699999999976432 2 26799999999887 55665543
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.50 E-value=8e-15 Score=143.73 Aligned_cols=79 Identities=16% Similarity=0.095 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHHHH--hCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEE
Q 006548 246 KGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLDSVSALLMM-VTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLL 321 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~--~~P~iLlLDEPtsgLD~~~~~~i~-~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL 321 (641)
..+|+|++| +++++. .+|+++++|||++|+|+.....+. ..++.+.++ +.++|+++|++ ++.+++|+.--+
T Consensus 60 s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v 134 (185)
T smart00534 60 STFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGV 134 (185)
T ss_pred cHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccc
Confidence 368887776 444444 499999999999999999877764 566777764 88999988886 577788764444
Q ss_pred eCCeEEEE
Q 006548 322 SNGNTLFF 329 (641)
Q Consensus 322 ~~G~iv~~ 329 (641)
.+++....
T Consensus 135 ~~~~~~~~ 142 (185)
T smart00534 135 RNLHMSAD 142 (185)
T ss_pred eEEEEEEE
Confidence 44444433
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-12 Score=139.72 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=65.5
Q ss_pred CCCCCCHHHHHHHHHHHHHH---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc
Q 006548 244 YMKGLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314 (641)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (641)
....+|.||+|+++||+.|+ .+|+||+||||+++||+..+..+++.|.++ +..+++|+|++. .+...
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~ 345 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADL 345 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhh
Confidence 33569999999999999886 699999999999999999999999988764 346788788764 44444
Q ss_pred C--CEEEEEeCCeE
Q 006548 315 F--DRICLLSNGNT 326 (641)
Q Consensus 315 ~--D~v~vL~~G~i 326 (641)
+ ++++.+++|++
T Consensus 346 ~~~~~i~~v~~G~i 359 (361)
T PRK00064 346 LENAKIFHVEQGKI 359 (361)
T ss_pred hccCcEEEEeCCEE
Confidence 3 57999999986
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.5e-14 Score=139.51 Aligned_cols=73 Identities=25% Similarity=0.263 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHHH----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 247 GLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
.||||||.+++||--|+ .+.++++||||.++||...+..+.++|+++.++ .-+|+++|++ .++..+|+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~-~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ-SQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT-SEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc--ccccccccccccc
Confidence 79999999999997765 367899999999999999999999999998754 5577778875 6889999888763
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-12 Score=131.64 Aligned_cols=120 Identities=23% Similarity=0.267 Sum_probs=80.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccC-CCCCHHHHHHHHHHhcCC
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI-GSLTVREYLYYSALLQLP 212 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG--~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~-~~lTV~E~l~~~~~~~~~ 212 (641)
+..++|.||||+|||||||.++. .+.. .|..... ....++|..|....+ ...++.+++
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~----~G~~v~a------~~~~~~~~d~i~~~l~~~~si~~~~--------- 89 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAH----IGSFVPA------DSATIGLVDKIFTRMSSRESVSSGQ--------- 89 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHh----CCCeeEc------CCcEEeeeeeeeeeeCCccChhhcc---------
Confidence 37899999999999999999984 3322 1544322 123466666643221 111111111
Q ss_pred CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHH-HHHHH
Q 006548 213 GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM-MVTLK 291 (641)
Q Consensus 213 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i-~~~L~ 291 (641)
..+ .-|.||++++++++.+|+++|+|||++|+|+.....+ ...++
T Consensus 90 -------------------S~f---------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~ 135 (213)
T cd03281 90 -------------------SAF---------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIE 135 (213)
T ss_pred -------------------chH---------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHH
Confidence 101 2467999999999999999999999999999765444 56888
Q ss_pred HHHHc---CCEEEEEEeCCh
Q 006548 292 KLAST---GCTLLFTINQSS 308 (641)
Q Consensus 292 ~l~~~---g~tvi~t~h~~~ 308 (641)
++.+. +.++|+++|++.
T Consensus 136 ~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 136 HLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHhcCCCCcEEEEEcChHH
Confidence 88764 247888888763
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-13 Score=141.96 Aligned_cols=169 Identities=24% Similarity=0.321 Sum_probs=120.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-----E------ECCEeCCCCCce-----------EEEEcCCC
Q 006548 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV-----F------VNGAKSEMPYGS-----------YGFVERET 191 (641)
Q Consensus 134 ~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I-----~------~~G~~~~~~~~~-----------~~yv~Q~~ 191 (641)
+||++.+++|-||-||||-+++|+|.++|.- |.- + +.|......... .-||.|-+
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnl---g~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ip 174 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIP 174 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCC---CCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHH
Confidence 3899999999999999999999999998863 321 0 011000000000 01111111
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE
Q 006548 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFI 271 (641)
Q Consensus 192 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlL 271 (641)
... ..+|.++|.- ...++..+++++.+.|....++-+. .|||||-||.+||.+-+++.++.++
T Consensus 175 r~~-k~~v~~~l~~----------~~~r~~~~~~~~~~~L~~~~~re~~------~lsggelqrfaia~~~vq~advyMF 237 (592)
T KOG0063|consen 175 RAV-KGTVGSLLDR----------KDERDNKEEVCDQLDLNNLLDREVE------QLSGGELQRFAIAMVCVQKADVYMF 237 (592)
T ss_pred HHH-HHHHHHHHHH----------HhhcccHHHHHHHHHHhhHHHhhhh------hcccchhhhhhhhhhhhhhcceeEe
Confidence 110 1233333311 0122356788899999999988765 9999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 272 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
|||.+-||...+..-...++.+..-..=||++-|+.+ ...-+.|-+++|..
T Consensus 238 DEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLs-VLDylSDFiCcLYG 288 (592)
T KOG0063|consen 238 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLS-VLDYLSDFICCLYG 288 (592)
T ss_pred cCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeech-HHHhhhcceeEEec
Confidence 9999999999999999999999877777888777764 56667899998864
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-12 Score=152.78 Aligned_cols=129 Identities=14% Similarity=0.129 Sum_probs=89.7
Q ss_pred eeeEEeCC-cEEEEECCCCCcHHHHHHHHHcC-CCCCCCcee-EEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHH
Q 006548 129 SNGYALPG-TMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYG-EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYY 205 (641)
Q Consensus 129 vs~~i~~G-e~~aIiGpsGsGKSTLl~~LaG~-~~~~~~~~G-~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~ 205 (641)
+++.+.+| ++++|.||||+|||||||+|+|. +.+.. | .|..+ ....++|..|...
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~---G~~Vpa~------~~~~~~~~d~i~~------------- 371 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQS---GIPIPAN------EHSEIPYFEEIFA------------- 371 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHh---CCCccCC------ccccccchhheee-------------
Confidence 68888877 99999999999999999999997 22221 3 11110 0011222111100
Q ss_pred HHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHH
Q 006548 206 SALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285 (641)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~ 285 (641)
.. +..+.... ....+|+|+++++.|++.+ .+|+++|+|||++|+|+.....
T Consensus 372 ----~i------------------~~~~si~~------~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~a 422 (771)
T TIGR01069 372 ----DI------------------GDEQSIEQ------NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSA 422 (771)
T ss_pred ----ec------------------ChHhHHhh------hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHH
Confidence 00 00000111 2347999999999998877 8999999999999999999998
Q ss_pred H-HHHHHHHHHcCCEEEEEEeCCh
Q 006548 286 M-MVTLKKLASTGCTLLFTINQSS 308 (641)
Q Consensus 286 i-~~~L~~l~~~g~tvi~t~h~~~ 308 (641)
+ ..+|+.+.+.|.++|++||+..
T Consensus 423 la~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 423 LAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHHhcCCEEEEECChHH
Confidence 8 5788888888999999888864
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4e-12 Score=127.24 Aligned_cols=44 Identities=23% Similarity=0.362 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPL-----YHLDSVSALLMMVTLKKLAS 295 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPt-----sgLD~~~~~~i~~~L~~l~~ 295 (641)
|++++.||++++.+|+++++|||| +|||+.+.+.+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999874
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.30 E-value=4e-12 Score=112.64 Aligned_cols=71 Identities=11% Similarity=0.039 Sum_probs=57.7
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CCceEEEEcCCCccCCCC
Q 006548 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----PYGSYGFVERETTLIGSL 197 (641)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~l 197 (641)
..+|+++++.+++||+++|+||||||||||++++. +|++.++|.+... ..+..++++|+ ++ ..
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EI 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hh
Confidence 46899999999999999999999999999999986 2899999987421 22346677776 44 46
Q ss_pred CHHHHHHH
Q 006548 198 TVREYLYY 205 (641)
Q Consensus 198 TV~E~l~~ 205 (641)
|++|||.+
T Consensus 70 ti~~Ni~~ 77 (107)
T cd00820 70 RLRLNIFL 77 (107)
T ss_pred hHHhhcee
Confidence 99999976
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-10 Score=118.40 Aligned_cols=193 Identities=13% Similarity=0.187 Sum_probs=139.2
Q ss_pred HHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCC-CCC--HHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHhhHh-H
Q 006548 441 RSLLIMSREWKYYWLRLILCMILTLCVGTVFSGL-GHS--LSSV----VTRVAAIFVFVSFNSLLNIAGVPALMKEIK-T 512 (641)
Q Consensus 441 R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l-~~~--~~~~----~~r~g~lff~~~~~~~~~~~~v~~~~~er~-v 512 (641)
|+++...|||.....-+++-+++.+++|.+|-+. +.. ..+. +--.|.+.+.+...+... ... ...||. -
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~--~~~-~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFS--GIS-VIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHh--hhH-HHHHHHhC
Confidence 6778899999999988998899989999887543 111 1111 112233333333322221 111 222333 2
Q ss_pred HHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 006548 513 YASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVY 592 (641)
Q Consensus 513 f~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~sl~~~i~~~~~~~~ 592 (641)
+.++....=-+...|++||.+.+++..++..+++.++.|++.+++. ..++.+++.+++..++..+++.++++..++.+
T Consensus 78 ~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 78 FLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 2233223334578899999999999999999999999998877654 34555555666677788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 593 WSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 593 ~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
.+..+.+.+..+++++||.+.|.+.+|+ |..|+.|++|.+|+.|++
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~--~~~~i~~~~P~~~~~~~~ 201 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPA--WMQGLAKINPLTYAVDGA 201 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHH--HHHHHHHHCcHHHHHHHH
Confidence 9888898899999999999999999996 666799999999999874
|
This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-11 Score=121.26 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=85.9
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 006548 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (641)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~-~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (641)
+.+.+|+++.+.+|++++|+||||+||||+++++++. +.+.. |...... . -.++|..| ++-.+...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~---G~~v~a~-~-----~~~~~~~~---i~~~~~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQI---GSFVPAS-S-----ATLSIFDS---VLTRMGASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhC---CCEEEcC-c-----eEEeccce---EEEEecCcc
Confidence 4688999999999999999999999999999999993 44432 6543321 1 12333222 111111111
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCC--HHHHHHHHHHHHHHhCCcEEEEeCCCCCCC
Q 006548 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP--CGERRRVRIARELVMRPHVLFIDEPLYHLD 279 (641)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LS--GGerqRv~IA~aL~~~P~iLlLDEPtsgLD 279 (641)
++.- ++| ..|-+|++-...-+.+|+++|+|||.+|.|
T Consensus 86 ~~~~-----------------------------------------~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~ 124 (222)
T cd03287 86 SIQH-----------------------------------------GMSTFMVELSETSHILSNCTSRSLVILDELGRGTS 124 (222)
T ss_pred cccc-----------------------------------------ccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCC
Confidence 1100 111 123334433334456899999999999999
Q ss_pred HHHHHHH-HHHHHHHHHc-CCEEEEEEeCCh
Q 006548 280 SVSALLM-MVTLKKLAST-GCTLLFTINQSS 308 (641)
Q Consensus 280 ~~~~~~i-~~~L~~l~~~-g~tvi~t~h~~~ 308 (641)
+.....+ ...++.+.+. +.++|+++|.+.
T Consensus 125 ~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 125 THDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred hhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 7776664 5677777766 889999888874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-11 Score=122.41 Aligned_cols=150 Identities=19% Similarity=0.226 Sum_probs=91.8
Q ss_pred EEeCCcEEEEECCCCCcHHHH-HHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhc
Q 006548 132 YALPGTMTVIMGPAKSGKSTL-LRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (641)
Q Consensus 132 ~i~~Ge~~aIiGpsGsGKSTL-l~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (641)
-+++|++++|.|+|||||||| ++++++..+++. . +.|+.. ..|..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~---~---------------~~yi~~------e~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGY---S---------------VSYVST------QLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCC---c---------------EEEEeC------CCCHHHHHHHHHHhC
Confidence 477899999999999999999 799998765431 1 233322 224455444332222
Q ss_pred CCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHh----CCcEEEEeCCCCCC----CHHH
Q 006548 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM----RPHVLFIDEPLYHL----DSVS 282 (641)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~----~P~iLlLDEPtsgL----D~~~ 282 (641)
.. +++.... +.-...+ .. ..+|+++.++-.+.+.+-. +|+++++||||+++ |+..
T Consensus 76 ~~---------~~~~~~~-~~l~~~~------~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~ 138 (230)
T PRK08533 76 YD---------INKKLIS-GKLLYIP------VY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVA 138 (230)
T ss_pred Cc---------hHHHhhc-CcEEEEE------ec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHH
Confidence 11 1111110 1000000 01 2467776655555444333 69999999999999 8888
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeCChH------HHHhcCCEEEEEe
Q 006548 283 ALLMMVTLKKLASTGCTLLFTINQSST------EVFGLFDRICLLS 322 (641)
Q Consensus 283 ~~~i~~~L~~l~~~g~tvi~t~h~~~~------~i~~~~D~v~vL~ 322 (641)
...+.+.+++++++|.|+++++|+... .+..++|-|+.|+
T Consensus 139 ~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 139 VNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 889999999998888888875543310 1244567777776
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.8e-12 Score=142.31 Aligned_cols=77 Identities=21% Similarity=0.179 Sum_probs=69.6
Q ss_pred CCCCHHHHHHHHHHHHHHhC----CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 006548 246 KGLPCGERRRVRIARELVMR----PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~----P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (641)
+.+||||+||++||++++.. |++||+||||+|||+.++..+.+.|+++++ +.+||+++|++. +...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999974 799999999974 44689999999
Q ss_pred eCCe
Q 006548 322 SNGN 325 (641)
Q Consensus 322 ~~G~ 325 (641)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-11 Score=137.28 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHHHHh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 006548 246 KGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (641)
+.+||||+||++||++++. +|+++|+|||++|||..++..+.+.|+++++ +.+|||++|+|. +..+||+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 3589999999999999997 5899999999999999999999999999974 688999999984 56899999999
Q ss_pred eCCe
Q 006548 322 SNGN 325 (641)
Q Consensus 322 ~~G~ 325 (641)
.++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8753
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.7e-11 Score=115.78 Aligned_cols=79 Identities=23% Similarity=0.084 Sum_probs=65.2
Q ss_pred CCCCCCHHHHH------HHHHHHHHHhCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCEEEEEEeCChH-----
Q 006548 244 YMKGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLD---SVSALLMMVTLKKLASTGCTLLFTINQSST----- 309 (641)
Q Consensus 244 ~~~~LSGGerq------Rv~IA~aL~~~P~iLlLDEPtsgLD---~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~----- 309 (641)
.+..+|+||+| +.........+|+++++|||++.+| ......+.+.++.+++.|.|+|+++|....
T Consensus 68 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 68 DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCccc
Confidence 44589999998 5555555667999999999999999 888888999999998889999998886542
Q ss_pred ---HHHhcCCEEEEEe
Q 006548 310 ---EVFGLFDRICLLS 322 (641)
Q Consensus 310 ---~i~~~~D~v~vL~ 322 (641)
.+..+||.|+.|+
T Consensus 148 ~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 148 GGGDVEYLVDGVIRLR 163 (187)
T ss_pred CcCceeEeeeEEEEEE
Confidence 2678899999986
|
A related protein is found in archaea. |
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-11 Score=147.22 Aligned_cols=82 Identities=18% Similarity=0.061 Sum_probs=74.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHh----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHH
Q 006548 242 HCYMKGLPCGERRRVRIARELVM----------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 311 (641)
Q Consensus 242 ~~~~~~LSGGerqRv~IA~aL~~----------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i 311 (641)
...++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++...|++|++++|.+ ...
T Consensus 945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~-~~~ 1023 (1042)
T TIGR00618 945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP-EFR 1023 (1042)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHH
Confidence 34567999999999999999996 7999999999999999999999999999988899999988886 578
Q ss_pred HhcCCEEEEEeCC
Q 006548 312 FGLFDRICLLSNG 324 (641)
Q Consensus 312 ~~~~D~v~vL~~G 324 (641)
..++|+|.|++.|
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 8999999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-11 Score=139.42 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=69.4
Q ss_pred CCCCCCHHHHHHHHHHHHHH----------hCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHH
Q 006548 244 YMKGLPCGERRRVRIARELV----------MRPHVLFIDEPL-YHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 312 (641)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~----------~~P~iLlLDEPt-sgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~ 312 (641)
.+..||||||||++||++|+ .+|++||||||| ++||+.+...+.+.|+++ .|.+||+++|++ ...
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~--~~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKD--HDP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECch--hch
Confidence 55789999999999999987 599999999998 789999999999999998 578999999986 355
Q ss_pred hcCCEEEEEeC-CeE
Q 006548 313 GLFDRICLLSN-GNT 326 (641)
Q Consensus 313 ~~~D~v~vL~~-G~i 326 (641)
..||++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 77999999985 544
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-11 Score=142.61 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 006548 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (641)
..+|+|++|++.|++++ .+|+++|+|||++|+|+.....+.. +++.+.+.|.++|++||++. .....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e-l~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE-LKALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH-HHHHHhcCCCeE-EE
Confidence 47999999999999998 8999999999999999999888864 67778777999999998853 444445555443 45
Q ss_pred eEEEE
Q 006548 325 NTLFF 329 (641)
Q Consensus 325 ~iv~~ 329 (641)
.+.++
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=128.05 Aligned_cols=171 Identities=18% Similarity=0.190 Sum_probs=109.4
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC---C------C----CCceEEEEc
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS---E------M----PYGSYGFVE 188 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~---~------~----~~~~~~yv~ 188 (641)
+.++++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.|.+.|+.. . . ..+.++++.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~---gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~ 220 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADL---NVIALIGERGREVREFIERDLGPEGLKRSIVVVA 220 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCe---EEEEEEecCCccHHHHHHhhcChhhhcCeEEEEE
Confidence 35689999 9999999999999999999999999999988864 9999866432 1 1 124577776
Q ss_pred CCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch--HHhhhhcCCCCCCCCCHHHHHHHHHH-HHHHhC
Q 006548 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD--YANKLIGGHCYMKGLPCGERRRVRIA-RELVMR 265 (641)
Q Consensus 189 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~ig~~~~~~~LSGGerqRv~IA-~aL~~~ 265 (641)
+.+.-. -.+....+.+ -.+.|.+...|-+- +.| +|+ |.+-| |++.
T Consensus 221 ~~~~~~---~~r~~~~~~a------------~~iAEyfr~~g~~Vll~~D----------slt-----r~A~A~rEis-- 268 (438)
T PRK07721 221 TSDQPA---LMRIKGAYTA------------TAIAEYFRDQGLNVMLMMD----------SVT-----RVAMAQREIG-- 268 (438)
T ss_pred CCCCCH---HHHHHHHHHH------------HHHHHHHHHCCCcEEEEEe----------ChH-----HHHHHHHHHH--
Confidence 643211 0111111110 01222222222110 001 110 00000 1111
Q ss_pred CcEEEEeCC--CCCCCHHHHHHHHHHHHHHHH--cCC-----EEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 266 PHVLFIDEP--LYHLDSVSALLMMVTLKKLAS--TGC-----TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 266 P~iLlLDEP--tsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
+.+.|| |+|+|+.....+.++++++.. +|. ||++..|+..+ .+||++..+.+|+++.+++..+
T Consensus 269 ---l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 ---LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred ---HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 112353 689999999999999999974 575 88888777653 7799999999999999998654
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-10 Score=116.89 Aligned_cols=134 Identities=18% Similarity=0.176 Sum_probs=86.3
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 006548 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (641)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (641)
+.+-+|+++..++|++++|.||||+|||||++.+++..--.. .| .........+++ -+.++..+...|+
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~--~G------~~vpa~~~~i~~---~~~i~~~~~~~d~ 85 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ--MG------MDVPAKSMRLSL---VDRIFTRIGARDD 85 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH--cC------CccCccccEecc---ccEEEEecCcccc
Confidence 467889999999999999999999999999999998631100 01 111111111211 1223333333333
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCH--HHHHHHHHHHHHHhCCcEEEEeCCCCCCCH
Q 006548 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC--GERRRVRIARELVMRPHVLFIDEPLYHLDS 280 (641)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG--GerqRv~IA~aL~~~P~iLlLDEPtsgLD~ 280 (641)
+.. ++|- .|-+|++-....+.+|+++++|||.+|+|+
T Consensus 86 ~~~-----------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 86 IMK-----------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred ccc-----------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 311 1110 233333333344568999999999999999
Q ss_pred HHHHHHHHH-HHHHHHc-CCEEEEEEeCCh
Q 006548 281 VSALLMMVT-LKKLAST-GCTLLFTINQSS 308 (641)
Q Consensus 281 ~~~~~i~~~-L~~l~~~-g~tvi~t~h~~~ 308 (641)
.....+... ++.+.+. +.++|+++|++.
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 999888887 7788765 899999888863
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-11 Score=124.65 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=61.1
Q ss_pred CCCCHHH--------HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHH-HHHHHHHHHHcCCEEEEEEeCChHHHHhcCC
Q 006548 246 KGLPCGE--------RRRVRIARELVMRPHVLFIDEPLYHLDSVSALL-MMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (641)
Q Consensus 246 ~~LSGGe--------rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~-i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (641)
..+|||| +||+++||++..+++|.+| ||+.+|+.+... ++ +..+...+.|.|+.+|... ....+|
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~p 201 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIFP 201 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCCC
Confidence 4689999 9999999999999999999 999999655543 44 5555545678888788763 467899
Q ss_pred EEEEEeCCeE
Q 006548 317 RICLLSNGNT 326 (641)
Q Consensus 317 ~v~vL~~G~i 326 (641)
.|.+|+.|++
T Consensus 202 aI~vl~s~sr 211 (249)
T cd01128 202 AIDILKSGTR 211 (249)
T ss_pred eEEEcCCCCc
Confidence 9999999987
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-09 Score=109.44 Aligned_cols=204 Identities=12% Similarity=0.098 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCC-CC------CH---HHHHHHHHHHHHHHHHHHHHHHh
Q 006548 432 ATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGL-GH------SL---SSVVTRVAAIFVFVSFNSLLNIA 501 (641)
Q Consensus 432 ~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l-~~------~~---~~~~~r~g~lff~~~~~~~~~~~ 501 (641)
+++++.+++|+++...|||..+..-+++-++.-+++|.+|-.. +. +. -..+--.|.+-+.+.+.++..
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~-- 78 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQS-- 78 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHh--
Confidence 3689999999999999999999999999999999999988542 11 10 111222233333333322221
Q ss_pred hHHHHHhhHh--HHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHH
Q 006548 502 GVPALMKEIK--TYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEG 579 (641)
Q Consensus 502 ~v~~~~~er~--vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~s 579 (641)
++ ....||. .+.+=+.... +...+.+++++..+-..++..+++.++.+. .|.+.....++.....+.+..++..+
T Consensus 79 ~~-~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 79 SL-SMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred hh-HhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 11 2222332 3333344443 567799999999987777776655555443 36665544444444455556677789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCc-cccccccccccHHHHHhhhc
Q 006548 580 LMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPG-PVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 580 l~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~-~~W~~w~~yis~~~Ya~e~~ 640 (641)
+|.+++.++++.+....+.+.++.+++..||.+.+.+.+|. +-|..|+.++||+.|..|++
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~ 217 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELV 217 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHH
Confidence 99999999999988888888888899999999989877743 23777799999999999875
|
Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-11 Score=119.47 Aligned_cols=78 Identities=14% Similarity=0.142 Sum_probs=63.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCcEEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 246 KGLPCGERRRVRIARELVMRPHVLFIDEP--LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~iLlLDEP--tsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
..+||+++-+..+++..+.+|+++++||| +.++| ..+.+.+.++.+.|.++|+++|.. .+...+|++..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 46999999999999999999999999995 33444 445677777766789999999874 56678999999999
Q ss_pred CeEEEE
Q 006548 324 GNTLFF 329 (641)
Q Consensus 324 G~iv~~ 329 (641)
|+++..
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 998765
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.8e-10 Score=126.88 Aligned_cols=136 Identities=18% Similarity=0.258 Sum_probs=101.8
Q ss_pred CCCCHHHHHHHHHHhcCCCccch-HHHHHHHH------HHHcCCchH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCC
Q 006548 195 GSLTVREYLYYSALLQLPGFFCQ-RKNVVEDA------IHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRP 266 (641)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~-~~~~v~~~------l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P 266 (641)
..+++.|.+.|...+.+...... .+..+.++ |-.+||.-+ +++ ....|||||.||+-||..+=.+=
T Consensus 427 ~~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R------~a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 427 SEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSR------SAGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred hhccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcccccc------cCCCcChhHHHHHHHHHHhcccc
Confidence 45788888887766654332111 11122222 233455432 233 33589999999999999998763
Q ss_pred --cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHHHH
Q 006548 267 --HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQH 338 (641)
Q Consensus 267 --~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~~ 338 (641)
=+.+||||+-||-+..-.++++.|++|++.|-|+|++-|++ ++...||+|+=| +.|+||+.|+++++++.
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~ 578 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLAN 578 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhC
Confidence 36799999999999999999999999999999999987765 678899999987 56899999999998753
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-10 Score=115.79 Aligned_cols=63 Identities=25% Similarity=0.382 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 006548 246 KGLPCGERRRVRIARELVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P---~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (641)
..+|.|+||.+.|+..|...+ .++++|||-++|+|..+..+++.|+.+.+.+.-+|+|||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 457999999999999998877 899999999999999999999999888776788999999873
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.3e-10 Score=121.14 Aligned_cols=141 Identities=14% Similarity=0.171 Sum_probs=94.7
Q ss_pred eeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCCC-ceEEEEcCCCc-cCCCCCHHHHHHH
Q 006548 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMPY-GSYGFVERETT-LIGSLTVREYLYY 205 (641)
Q Consensus 129 vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~-~~~~-~~~~yv~Q~~~-l~~~lTV~E~l~~ 205 (641)
+++.+++|+.++|.||+|||||||+++|++.+++.. |.+.+..... .... ..+.++.+... -..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~---~iv~ied~~El~~~~~~~~~l~~~~~~~~~~---------- 203 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDE---RIITIEDTREIFLPHPNYVHLFYSKGGQGLA---------- 203 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccc---cEEEEcCccccCCCCCCEEEEEecCCCCCcC----------
Confidence 567788999999999999999999999999998764 7667653211 1110 11111111000 000
Q ss_pred HHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHH
Q 006548 206 SALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285 (641)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~ 285 (641)
.++- .-.+..+|-.+|+++++|||.+ .+
T Consensus 204 -----------------------------------------~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 204 -----------------------------------------KVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred -----------------------------------------ccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 1111 1134456778999999999996 34
Q ss_pred HHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 286 i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
+.++++.+...+.+++.|+|..+ +.+..||+..|..|++...|.+.+.+
T Consensus 232 ~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 232 AFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 56777777643446688888875 56669999999999988888877665
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.8e-09 Score=104.84 Aligned_cols=186 Identities=14% Similarity=0.091 Sum_probs=121.0
Q ss_pred hhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHhhHh--HHHhhccCCCcc
Q 006548 447 SREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVT-RVAAIFVFVSFNSLLNIAGVPALMKEIK--TYASEESNMHSG 523 (641)
Q Consensus 447 ~Rd~~~~~~r~~~~~~~~l~~G~~f~~l~~~~~~~~~-r~g~lff~~~~~~~~~~~~v~~~~~er~--vf~rE~~~~~Y~ 523 (641)
+|||.....-+.+-+++-++++.+|-+-. +.+..+. -.|.+-+...+.+....+ -....||+ .+.|-+..-. +
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~er~~G~l~rl~~~P~-~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAISTAFTGQA--IAVARDRRYGALKRLGATPL-P 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhCHHHHHhcCCC-c
Confidence 68999998888888888888888776521 1111111 222222222221111111 12233444 4444444433 5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 006548 524 ALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWK---DVYWSILTLIS 600 (641)
Q Consensus 524 ~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~sl~~~i~~~~~---~~~~a~~~~~~ 600 (641)
...|+++|++..++..++..+++. +++++.|++.....+ .+++.+.+....+.+++.+++++++ +.+.+..+...
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 789999999988888877655554 556778988754333 3334444555566677777777764 44445777788
Q ss_pred HHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 601 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 601 ~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
+..+++++||.+.|.+.+|+ |..|+++++|.+|+.+++
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~--~lq~i~~~~P~t~~~~~~ 193 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPT--WIKWFVRVQPSSYATEAL 193 (232)
T ss_pred HHHHHHHHhheeeecccccH--HHHHHHHhCcHHHHHHHH
Confidence 88899999999999999996 777799999999999875
|
This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance. |
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-10 Score=136.09 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=68.5
Q ss_pred CCCCCCCHHHHH------HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCC
Q 006548 243 CYMKGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (641)
Q Consensus 243 ~~~~~LSGGerq------Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (641)
..+..|||||++ |++||++++.+|+++||||||+|||+..+..+.+.|+.++..+.+||+++|++ ++...||
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d 861 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAAD 861 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCC
Confidence 356789999999 55566678899999999999999999999999999999887778899988886 3678999
Q ss_pred EEEEEe
Q 006548 317 RICLLS 322 (641)
Q Consensus 317 ~v~vL~ 322 (641)
++++|.
T Consensus 862 ~~~~l~ 867 (880)
T PRK03918 862 YVIRVS 867 (880)
T ss_pred eEEEEE
Confidence 999997
|
|
| >TIGR01291 nodJ ABC-2 type transporter, NodJ family | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-08 Score=105.55 Aligned_cols=200 Identities=14% Similarity=0.024 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHhhC-hHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH--HH--HHHHHHHHHHHHHHHHHhhHHHHHh-
Q 006548 435 VAVLTWRSLLIMSRE-WKYYWLRLILCMILTLCVGTVFSGLGHSLSSV--VT--RVAAIFVFVSFNSLLNIAGVPALMK- 508 (641)
Q Consensus 435 ~~~l~~R~~~~~~Rd-~~~~~~r~~~~~~~~l~~G~~f~~l~~~~~~~--~~--r~g~lff~~~~~~~~~~~~v~~~~~- 508 (641)
...+++|+++..+|+ |.....-+++-++.-+++|..|-....+..+. .+ --|.+-+++++.++.... ...+..
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~~~~~-~~~~~~~ 85 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTASTFETI-YATFARM 85 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 456679999999999 99888889988888888888875431111111 00 112222222222211100 011222
Q ss_pred -hHhHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006548 509 -EIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASI 587 (641)
Q Consensus 509 -er~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~sl~~~i~~~ 587 (641)
|+..+.|-+..-. +...+.+|+++.+.-..++..++...+.+ ..|..+. ...+.++..+.+..++..++|++++.+
T Consensus 86 r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~-~~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~~ 162 (253)
T TIGR01291 86 RVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTA-TLGYIEW-WSLIYILPVIALTGLAFASLSMLVAAL 162 (253)
T ss_pred HHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333332222 56889999999987777776666555544 3354443 334444455566777778999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 588 WKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 588 ~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
.++.+.+..+...+..+++..||.+.+.+.+|+ |..++.+++|+.|+.|++
T Consensus 163 ~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~--~lq~i~~~nPlt~~v~~~ 213 (253)
T TIGR01291 163 APSYAYFAFYQSLVITPMLFLSGVVFPVFQLND--VIQGMTHFLPLAHSIDDI 213 (253)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhcCHHhChH--HHHHHHHHCcHHHHHHHH
Confidence 999999988889999999999999999999996 666789999999999874
|
Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.1e-10 Score=122.19 Aligned_cols=169 Identities=16% Similarity=0.118 Sum_probs=116.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 185 (641)
+.-++++..+. .+.++++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.|.+.|+.
T Consensus 131 ~~r~~i~~~l~----TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~---gvI~~iGer--------- 193 (432)
T PRK06793 131 FEREEITDVFE----TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADI---NVISLVGER--------- 193 (432)
T ss_pred hheechhhccC----CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCe---EEEEeCCCC---------
Confidence 45555554443 234688885 9999999999999999999999999999988764 777666542
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHH--
Q 006548 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV-- 263 (641)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~-- 263 (641)
..+|+|.+... +..-++... ..+ ....+-|.|+|+|++.+.+.+
T Consensus 194 ----------g~ev~e~~~~~-------------------l~~~gl~~t--vvv---~~tsd~s~~~r~ra~~~a~~iAE 239 (432)
T PRK06793 194 ----------GREVKDFIRKE-------------------LGEEGMRKS--VVV---VATSDESHLMQLRAAKLATSIAE 239 (432)
T ss_pred ----------cccHHHHHHHH-------------------hhhccccee--EEE---EECCCCCHHHHHHHHHHHHHHHH
Confidence 13566655321 111111100 001 133578999999999999888
Q ss_pred -----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 264 -----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 264 -----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
.++-+|++|+||++.|+. .++-..+.+....|.+..+.+|++ .+ ++|.-...+|.+...+..
T Consensus 240 yfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L---~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 240 YFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KL---LERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hH---HHHhccCCCcceEEEEEE
Confidence 789999999999999996 555556666654577777766643 33 444445578888766553
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.1e-10 Score=134.94 Aligned_cols=80 Identities=24% Similarity=0.169 Sum_probs=70.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh--------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc
Q 006548 243 CYMKGLPCGERRRVRIARELVM--------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314 (641)
Q Consensus 243 ~~~~~LSGGerqRv~IA~aL~~--------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (641)
..+..|||||+++++||++|+. +|++||+||||++||+.+...+++.|..+++.|++|++++|.. ....++
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhc
Confidence 4567999999999999999996 8999999999999999999999999999998899999988865 455666
Q ss_pred CCEEEEEeC
Q 006548 315 FDRICLLSN 323 (641)
Q Consensus 315 ~D~v~vL~~ 323 (641)
-.+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 677777654
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-09 Score=125.72 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=60.5
Q ss_pred HhCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHH--------HhcCCEEEEEeCCeEEEEeCh
Q 006548 263 VMRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCTLLFTINQSSTEV--------FGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i--------~~~~D~v~vL~~G~iv~~G~~ 332 (641)
..+|+++++|||+.+| |+..+..+.+.++++++.|.++++++|++.+.. .+.||++++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 799999999999999988999999999885421 368999999999998776643
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-09 Score=102.05 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHH
Q 006548 247 GLPCGERRRVRIARELVMRPHVLFIDEPLY----------HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~iLlLDEPts----------gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~ 310 (641)
..+.++.++...+++...+|+++++||+++ ++|......+.+++....+.+.|+|+++|.+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 345666778888899999999999999995 4555556666666666656699999999987543
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-08 Score=98.00 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=59.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
..+..|-||-=---+.+. ..+--+.|||||-++|.+.-+..++..|+++++.|.-+|+.||.|.. +.----+|+-++.
T Consensus 126 sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiL-lAiP~A~I~~~~~ 203 (233)
T COG3910 126 SLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPIL-LAIPGAEIYEISE 203 (233)
T ss_pred chhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhh-eeCCCcEEEEEec
Confidence 345678898755444444 35678999999999999999999999999999999999999999852 2112234444544
Q ss_pred C
Q 006548 324 G 324 (641)
Q Consensus 324 G 324 (641)
+
T Consensus 204 ~ 204 (233)
T COG3910 204 S 204 (233)
T ss_pred C
Confidence 3
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.9e-09 Score=132.72 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=77.4
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC---CCCCCCCHHHHH------HHHHHHHHHhCC
Q 006548 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH---CYMKGLPCGERR------RVRIARELVMRP 266 (641)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~---~~~~~LSGGerq------Rv~IA~aL~~~P 266 (641)
..|+.|||.+ + +.. ..+ ...++..+..++....+.|+ ..+..||||||| |++||++++.+|
T Consensus 1155 ~~~~~~~i~~----~-~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~ 1224 (1311)
T TIGR00606 1155 RGQDIEYIEI----R-SDA---DEN--VSASDKRRNYNYRVVMLKGDTALDMRGRCSAGQKVLASLIIRLALAETFCLNC 1224 (1311)
T ss_pred CccHHHHhhc----C-CCC---ChH--HHHHHHcCchHHHhccCCCCeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCC
Confidence 3588898865 1 111 111 23333344433333333321 244579999999 999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCEEEEEEeCChHHHHhcC
Q 006548 267 HVLFIDEPLYHLDSVSALLMMVTLKKLAS-----TGCTLLFTINQSSTEVFGLF 315 (641)
Q Consensus 267 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tvi~t~h~~~~~i~~~~ 315 (641)
++|+|||||+|||+.+...+.+.|..+.. .|.+||+++|++ ..+..+|
T Consensus 1225 ~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~-~~~~~~~ 1277 (1311)
T TIGR00606 1225 GIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE-DFVELLG 1277 (1311)
T ss_pred CEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH-HHHHHHh
Confidence 99999999999999999999999988742 378999988876 4676664
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.8e-09 Score=128.55 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=66.0
Q ss_pred CCCCCCHHHHHHHHH------HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-Hc-C-CEEEEEEeCChHHHHhc
Q 006548 244 YMKGLPCGERRRVRI------ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-ST-G-CTLLFTINQSSTEVFGL 314 (641)
Q Consensus 244 ~~~~LSGGerqRv~I------A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~-g-~tvi~t~h~~~~~i~~~ 314 (641)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.|+... .. | .++|+++|++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 467899999999975 589999999999999999999999999999998654 33 3 47888888873 4578
Q ss_pred CCEEEEEe
Q 006548 315 FDRICLLS 322 (641)
Q Consensus 315 ~D~v~vL~ 322 (641)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.7e-08 Score=100.10 Aligned_cols=162 Identities=17% Similarity=0.181 Sum_probs=95.4
Q ss_pred eeece-eeEEeCCcEEEEECCCCCcHHHHHHHHH-cCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 006548 125 VVKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIA-GRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (641)
Q Consensus 125 iL~~v-s~~i~~Ge~~aIiGpsGsGKSTLl~~La-G~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (641)
-|+.+ .+=+++|.++.|.|++|+|||||...++ +....+ + .+.|+..+. +..+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g----~--------------~~~y~~~e~------~~~~~ 68 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQG----K--------------KVYVITTEN------TSKSY 68 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCC----C--------------EEEEEEcCC------CHHHH
Confidence 34443 4557899999999999999999998875 222211 2 233443321 22332
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEeCCCCC---
Q 006548 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM--RPHVLFIDEPLYH--- 277 (641)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~--~P~iLlLDEPtsg--- 277 (641)
+.-...+... +++.+. .|...+.+..+. .....+.++++.+.....++. +|+++++||||+.
T Consensus 69 ~~~~~~~g~~---------~~~~~~-~g~l~i~~~~~~---~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~ 135 (234)
T PRK06067 69 LKQMESVKID---------ISDFFL-WGYLRIFPLNTE---GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATY 135 (234)
T ss_pred HHHHHHCCCC---------hhHHHh-CCCceEEecccc---ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhc
Confidence 2211111110 001100 011111111111 112356788999999999997 9999999999964
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEEeCChH------HHHhcCCEEEEEeC
Q 006548 278 LDSVSALLMMVTLKKLASTGCTLLFTINQSST------EVFGLFDRICLLSN 323 (641)
Q Consensus 278 LD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~------~i~~~~D~v~vL~~ 323 (641)
+|......+++.++.++++|.|+++++|+... .+..++|-++.|+.
T Consensus 136 ~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 136 AEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 45555556666677777788999998887642 14667787777763
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.8e-09 Score=130.41 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=66.2
Q ss_pred CCCCCCHHHHHHHHHHHHHH----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEE
Q 006548 244 YMKGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (641)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (641)
.+..||||||+|++||++++ .+|+++||||||+|||+.+...+.++|+.+++ +.++|+++|++. ....||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhHe
Confidence 55789999999999999985 56799999999999999999999999999875 467888899874 457899998
Q ss_pred EEe
Q 006548 320 LLS 322 (641)
Q Consensus 320 vL~ 322 (641)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 664
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain | Back alignment and domain information |
|---|
Probab=98.83 E-value=3e-08 Score=98.70 Aligned_cols=112 Identities=17% Similarity=0.076 Sum_probs=93.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006548 523 GALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVH 602 (641)
Q Consensus 523 ~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~ 602 (641)
+...++++|++..++..+++++++..+.||+.|++.. .++.+++.+++..++..+++.+++++.++...+. ....+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHHH
Confidence 3457799999999999999999999999999999874 5777788888889999999999999999765443 33444
Q ss_pred HHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 603 VVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 603 ~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
.+.++++|.+.|.+.+|+ |..|++|++|.+|+.+++
T Consensus 134 ~~~~~~sG~~~P~~~~P~--~~~~i~~~~P~t~~~~~~ 169 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPA--FFQAIHPFLPMTYSVNGL 169 (208)
T ss_pred HHHHccCCCccchhhCHH--HHHHhhhhCcHHHHHHHH
Confidence 566677888899999996 666799999999999975
|
This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.79 E-value=2e-08 Score=102.40 Aligned_cols=135 Identities=23% Similarity=0.389 Sum_probs=81.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCc
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G-~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 214 (641)
|++..|+||+|+|||||+-.++=-... |.=.+.+ ... .....+.|+.=|+..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~-----G~~~~g~~~~~-~~~~~Vlyi~~Ed~~--------------------- 53 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMAL-----GKNLFGGGLKV-TEPGRVVYLSAEDPR--------------------- 53 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhc-----CccccCCcccc-CCCceEEEEECCCCH---------------------
Confidence 678999999999999998887642221 2211111 111 112234444322211
Q ss_pred cchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH----------------HHHhCCcEEEEeCCCC--
Q 006548 215 FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR----------------ELVMRPHVLFIDEPLY-- 276 (641)
Q Consensus 215 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~----------------aL~~~P~iLlLDEPts-- 276 (641)
.+..+++..+...+++.+..++.. ..+|+.|++.+++ ....+|+++++| |++
T Consensus 54 -~~i~~Rl~~i~~~~~~~~~~~rl~--------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~ 123 (239)
T cd01125 54 -EEIHRRLEAILQHLEPDDAGDRLF--------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSF 123 (239)
T ss_pred -HHHHHHHHHHHhhcCCcCcccceE--------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHh
Confidence 012334555556565544433322 1244555554433 335799999999 765
Q ss_pred ----CCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCC
Q 006548 277 ----HLDSVSALLMMVTLKKLAST-GCTLLFTINQS 307 (641)
Q Consensus 277 ----gLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~ 307 (641)
.+|+.....+++.|++++++ |++|++++|..
T Consensus 124 ~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 124 HGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 47999999999999999854 89999866654
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK15066 inner membrane transport permease; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.9e-07 Score=90.96 Aligned_cols=204 Identities=16% Similarity=0.112 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHhhChHH-HHHHHHHHHHHHHHHHHHhcCC-CC--CHH-HHHHHHHHHHHHHHHHHHHHHhhHHH
Q 006548 431 SATRVAVLTWRSLLIMSREWKY-YWLRLILCMILTLCVGTVFSGL-GH--SLS-SVVTRVAAIFVFVSFNSLLNIAGVPA 505 (641)
Q Consensus 431 ~~~Q~~~l~~R~~~~~~Rd~~~-~~~r~~~~~~~~l~~G~~f~~l-~~--~~~-~~~~r~g~lff~~~~~~~~~~~~v~~ 505 (641)
.++-++.+.+|+.+...||+.. ...-+++.++..+++|.++-.. +. +.+ -..--.|.+-+.....+.+.. ...
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~~~--~~~ 83 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYSNV--ASS 83 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3667889999999999999854 3344455566677777665321 11 111 011111333222222221111 112
Q ss_pred HHhhHhH-HHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006548 506 LMKEIKT-YASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVV 584 (641)
Q Consensus 506 ~~~er~v-f~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~sl~~~i 584 (641)
+..+|.. ..++-..---+...+.+++++...-..++..++..++.+...|.... ....++..+.+...+....++++
T Consensus 84 i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~ 161 (257)
T PRK15066 84 FFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLIN 161 (257)
T ss_pred HHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223211 11111122345677889999987766666655555555444466543 22233333333334344458888
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 585 ASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 585 ~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
+.+.++......+...++.+++..||.+.+.+.+|+ |.+|+.++||+.|..|++
T Consensus 162 a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~--~l~~i~~~nPlt~~v~~~ 215 (257)
T PRK15066 162 AVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPP--FWQGVSKLNPIVYMVNAF 215 (257)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChH--HHHHHHHHCcHHHHHHHH
Confidence 888899888888888888999999999999999995 777799999999999874
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-08 Score=126.25 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=67.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEE
Q 006548 244 YMKGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (641)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (641)
.+..||||||++++||++++. .|+++|||||++|||+.+...+.++|+++++ +..+|+++|++. +...||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeE
Confidence 456899999999999999985 6799999999999999999999999999865 466788888873 668999999
Q ss_pred EEeC
Q 006548 320 LLSN 323 (641)
Q Consensus 320 vL~~ 323 (641)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8753
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.5e-08 Score=97.82 Aligned_cols=57 Identities=25% Similarity=0.258 Sum_probs=42.3
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
+|+++|..+|+++++|||. |..+...+ .+.+..|..++.|+|.++ +.+..||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778899999999999996 55543333 334567889999999885 346688887764
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.7e-09 Score=112.97 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=45.1
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC
Q 006548 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE 178 (641)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~ 178 (641)
+.+|++||+.+++||+++|+|||||||||||+ +|+..|.. .|+|.++|.+..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~s--Gg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSE--GYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCC--CCEEEECCEECC
Confidence 46899999999999999999999999999999 67776654 248999998753
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-08 Score=120.21 Aligned_cols=79 Identities=24% Similarity=0.337 Sum_probs=66.7
Q ss_pred CCCCCCHHHHH------HHHHHHHHHhC-----C-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-EEEEEEeCChHH
Q 006548 244 YMKGLPCGERR------RVRIARELVMR-----P-HVLFIDEPLYHLDSVSALLMMVTLKKLASTGC-TLLFTINQSSTE 310 (641)
Q Consensus 244 ~~~~LSGGerq------Rv~IA~aL~~~-----P-~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~-tvi~t~h~~~~~ 310 (641)
.+..||||||+ |++||++++.+ | +++|+||||++||+.....+.++|+.+...|. +||+++|++.
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~-- 855 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE-- 855 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--
Confidence 35689999999 99999999864 3 67999999999999999999999999986664 7888888873
Q ss_pred HHhcCCEEEEEeCC
Q 006548 311 VFGLFDRICLLSNG 324 (641)
Q Consensus 311 i~~~~D~v~vL~~G 324 (641)
....||+++.|.+.
T Consensus 856 ~~~~ad~~~~~~~~ 869 (880)
T PRK02224 856 LVGAADDLVRVEKD 869 (880)
T ss_pred HHHhcCeeEEeecC
Confidence 34679999999643
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-08 Score=114.61 Aligned_cols=164 Identities=18% Similarity=0.197 Sum_probs=100.4
Q ss_pred eece-eeEEeCCcEEEEECCCCCcHHHHHHHH--HcCCCCCCCceeEEEECCEeCCC----CCceEEEEcCCCccCCCCC
Q 006548 126 VKSS-NGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEM----PYGSYGFVERETTLIGSLT 198 (641)
Q Consensus 126 L~~v-s~~i~~Ge~~aIiGpsGsGKSTLl~~L--aG~~~~~~~~~G~I~~~G~~~~~----~~~~~~yv~Q~~~l~~~lT 198 (641)
|+.+ .+=+.+|..+.|.|++|||||||..-. .|....+. .-+++....... ..+.+|+-.++..--
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge---~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~---- 82 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDE---PGVFVTFEESPQDIIKNARSFGWDLQKLVDE---- 82 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC---CEEEEEEecCHHHHHHHHHHcCCCHHHHhhc----
Confidence 4443 456778999999999999999998866 45444332 445554332100 001222221110000
Q ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH--HHHHhCCcEEEEeCCCC
Q 006548 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA--RELVMRPHVLFIDEPLY 276 (641)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA--~aL~~~P~iLlLDEPts 276 (641)
+++.+ . .. ........+++.+++.+..++... .+|+|++|||.|+ .+|...|+..
T Consensus 83 --g~l~~-----~-~~--~~~~~~~~~~~~~~l~~~l~~i~~------~ls~g~~qRVvIDSl~aL~~~~~~~------- 139 (484)
T TIGR02655 83 --GKLFI-----L-DA--SPDPEGQDVVGGFDLSALIERINY------AIRKYKAKRVSIDSVTAVFQQYDAV------- 139 (484)
T ss_pred --CceEE-----E-ec--CchhccccccccCCHHHHHHHHHH------HHHHhCCcEEEEeehhHhhhhcCch-------
Confidence 00000 0 00 000111234556777777777664 8999999999999 6666665543
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHH-------H-HhcCCEEEEEe
Q 006548 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE-------V-FGLFDRICLLS 322 (641)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~-------i-~~~~D~v~vL~ 322 (641)
...+..+.++++.+++.|+|+|+++|+.... + ..+||.|+.|+
T Consensus 140 ---~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 ---SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ---HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677889999999988899999999876421 2 56799999987
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.1e-08 Score=106.99 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=92.4
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHH
Q 006548 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (641)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (641)
.++++.+..+..|++++++||||+||||++..|++.+.... |. +.++++.+|. ...++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~---G~------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRH---GA------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhc---CC------------CeEEEEeCCc---cchhHHHHH
Confidence 34566777788899999999999999999999999765432 31 2467777765 357899999
Q ss_pred HHHHHhc-CCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH-HHHHHHHHHhCC-----cEEEEeCCCC
Q 006548 204 YYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR-RVRIARELVMRP-----HVLFIDEPLY 276 (641)
Q Consensus 204 ~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq-Rv~IA~aL~~~P-----~iLlLDEPts 276 (641)
.+.+.+. .+.. ......+...+..++.+....++. ....+++. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilGVpv~--~~~~~~Dl~~aL~~L~d~d~VLID------TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILGVPVH--AVKDAADLRLALSELRNKHIVLID------TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhCCCee--ccCCchhHHHHHHhccCCCeEEeC------CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 8765543 3221 111223344455566655444443 32222322 233444455554 6899999998
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEEeC
Q 006548 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQ 306 (641)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~ 306 (641)
+ ..+.+.++.....+.+-++.|+-
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTKl 401 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTKL 401 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeCC
Confidence 7 34455555655555544443443
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-06 Score=79.49 Aligned_cols=118 Identities=26% Similarity=0.339 Sum_probs=76.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCc
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 214 (641)
+|..+.|.||+|+||||+++.|++...... .+-+.++...... .......
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~----------------~~~~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILE----------------EVLDQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccc----------------cCHHHHH------------
Confidence 367899999999999999999999876531 1244444332110 0000000
Q ss_pred cchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHH------
Q 006548 215 FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV------ 288 (641)
Q Consensus 215 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~------ 288 (641)
.... ........+++..+..+.++--.+|+++++||+..-.+.........
T Consensus 51 -----------------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~ 107 (148)
T smart00382 51 -----------------LIIV------GGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRL 107 (148)
T ss_pred -----------------hhhh------hccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHH
Confidence 0000 11223567788888888888877899999999999999988887665
Q ss_pred HHHHHHHcCCEEEEEEe
Q 006548 289 TLKKLASTGCTLLFTIN 305 (641)
Q Consensus 289 ~L~~l~~~g~tvi~t~h 305 (641)
........+..+|+++|
T Consensus 108 ~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 108 LLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHhcCCCEEEEEeC
Confidence 22233345678888777
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.5e-07 Score=106.99 Aligned_cols=55 Identities=25% Similarity=0.338 Sum_probs=48.4
Q ss_pred HHHHHHhCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHh
Q 006548 258 IARELVMRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 313 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~ 313 (641)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.++++++|++. ++.+
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHhh
Confidence 677888999999999999999 799999999999999988999999888875 4443
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-07 Score=92.35 Aligned_cols=80 Identities=20% Similarity=0.197 Sum_probs=57.2
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCC-CceEEEEcC--CCccCCCCCHHH
Q 006548 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMP-YGSYGFVER--ETTLIGSLTVRE 201 (641)
Q Consensus 126 L~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~-~~~-~~~~~yv~Q--~~~l~~~lTV~E 201 (641)
.+=+.+.+++|+.++|+||||||||||+++|+|+++++. |.|.+.+... ... ...++++.| ++...+..++.+
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~---~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDE---RIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCC---CEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 344455677899999999999999999999999998765 8999977432 111 233455544 334456778888
Q ss_pred HHHHHHH
Q 006548 202 YLYYSAL 208 (641)
Q Consensus 202 ~l~~~~~ 208 (641)
.+....+
T Consensus 92 ~l~~~lR 98 (186)
T cd01130 92 LLRSALR 98 (186)
T ss_pred HHHHHhc
Confidence 8866543
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-07 Score=103.25 Aligned_cols=169 Identities=14% Similarity=0.065 Sum_probs=108.2
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----------CCCceEEEEcCC
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-----------MPYGSYGFVERE 190 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~-----------~~~~~~~yv~Q~ 190 (641)
+.++|+++ +.+.+|+.++|+|+||+|||||+++|+|..+++...-|.|-.+|.+.. ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 45799999 999999999999999999999999999998776423355555553321 123368999999
Q ss_pred CccCCCCCHHHHHHHHHHhcCCCccc-----hHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC
Q 006548 191 TTLIGSLTVREYLYYSALLQLPGFFC-----QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (641)
Q Consensus 191 ~~l~~~lTV~E~l~~~~~~~~~~~~~-----~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (641)
...+..+++.|++.+.+......... +.-.+..++.+++++
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REisl---------------------------------- 266 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIAL---------------------------------- 266 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHHH----------------------------------
Confidence 99999999999997765432110000 011111122222211
Q ss_pred CcEEEEeCC--CCCCCHHHHHHHHHHHHHHH--H-cC-CEEEEEEeCChHHHH-hcCCEEEEEeCCeEEEE
Q 006548 266 PHVLFIDEP--LYHLDSVSALLMMVTLKKLA--S-TG-CTLLFTINQSSTEVF-GLFDRICLLSNGNTLFF 329 (641)
Q Consensus 266 P~iLlLDEP--tsgLD~~~~~~i~~~L~~l~--~-~g-~tvi~t~h~~~~~i~-~~~D~v~vL~~G~iv~~ 329 (641)
.+.|| +.|-.+..-..+-+++.+-- + .| .|.+.++.-+.+++. -++|.+.-+-||+++..
T Consensus 267 ----~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 267 ----SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred ----hcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 12243 23566666666667776652 2 23 577777766654433 34777777789999864
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-06 Score=97.03 Aligned_cols=173 Identities=16% Similarity=0.102 Sum_probs=100.3
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------------CCceEEEEc
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-------------PYGSYGFVE 188 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-------------~~~~~~yv~ 188 (641)
+.++++++ +.+.+||.++|+|+||+|||||+++|+|..+++. |.+...|..... ..+.+.++.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~---~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~ 225 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADV---NVIALIGERGREVREFIEHDLGEEGLKRSVVVVA 225 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCE---EEEEEEeecchHHHHHHHHHhcccccceEEEEEE
Confidence 35789999 9999999999999999999999999999987753 666555542110 001112222
Q ss_pred CCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCH-HHHHHHHHHHHHHhCCc
Q 006548 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC-GERRRVRIARELVMRPH 267 (641)
Q Consensus 189 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG-GerqRv~IA~aL~~~P~ 267 (641)
+.+. +..+-. + .....-.+.|.+...|-+ -++ ...+|+- -|-+| ++.
T Consensus 226 ~~d~-----~p~~r~------~----~~~~a~t~AE~frd~G~~----Vll----~~DslTr~A~A~R-----Eis---- 273 (440)
T TIGR01026 226 TSDQ-----SPLLRL------K----GAYVATAIAEYFRDQGKD----VLL----LMDSVTRFAMAQR-----EIG---- 273 (440)
T ss_pred CCCC-----CHHHHH------H----HHHHHHHHHHHHHHCCCC----EEE----EEeChHHHHHHHH-----HHH----
Confidence 2111 000000 0 000111233333333321 000 0011210 11111 111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCC-------EEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 268 VLFIDEP--LYHLDSVSALLMMVTLKKLASTGC-------TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 268 iLlLDEP--tsgLD~~~~~~i~~~L~~l~~~g~-------tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
+.+.|| +.|+|+.....+-+++.+....+. ||++..|+.. ..++|++.-+.+|+++.+....+
T Consensus 274 -l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 274 -LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred -HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhh
Confidence 234575 459999999999999999875555 5555555442 34689999999999999887654
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.2e-07 Score=100.66 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHHHHh---------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 006548 246 KGLPCGERRRVRIARELVM---------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~---------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (641)
..+|.||+|++.||..|+. +|+||+||||+++||+..+..+++.|+.. |..+++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 3499999999999999999 99999999999999999999999999764 678899888764
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.8e-07 Score=99.38 Aligned_cols=74 Identities=18% Similarity=0.073 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHH---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCE
Q 006548 247 GLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (641)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.... .+ ++|+.++ ...+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~-~it~t~~----~~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QA-IVAGTEA----PPGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cE-EEEcCCC----CCCCce
Confidence 48999999999999999 8999999999999999999999998886532 23 4443332 357999
Q ss_pred EEEEeCCeEEE
Q 006548 318 ICLLSNGNTLF 328 (641)
Q Consensus 318 v~vL~~G~iv~ 328 (641)
++.+.+|++.-
T Consensus 335 ~~~~~~~~~~~ 345 (349)
T PRK14079 335 TLRIEAGVFTP 345 (349)
T ss_pred EEEEeccEecC
Confidence 99999998753
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-06 Score=93.27 Aligned_cols=56 Identities=25% Similarity=0.277 Sum_probs=41.6
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (641)
+++++|-.+|+++++||+. |..++...++ .+..|.+++.|+|..+ +....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 3567888999999999997 8888765444 3567989898888864 34556777654
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.9e-07 Score=106.97 Aligned_cols=79 Identities=27% Similarity=0.271 Sum_probs=69.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHH------hC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc
Q 006548 243 CYMKGLPCGERRRVRIARELV------MR--PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314 (641)
Q Consensus 243 ~~~~~LSGGerqRv~IA~aL~------~~--P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (641)
..+..|||||+=.++||-+|+ .+ -++|||||||..||+.+...+++.|..+...+.+|++++|++ +..+.
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~ 888 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKER 888 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHh
Confidence 366789999999888887776 35 689999999999999999999999999998899999988886 67789
Q ss_pred CCEEEEEeC
Q 006548 315 FDRICLLSN 323 (641)
Q Consensus 315 ~D~v~vL~~ 323 (641)
+|.++.++.
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999998864
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.4e-07 Score=91.52 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=63.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHH-HhcCCCccc
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFC 216 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~ 216 (641)
+++|.||||||||||.++|++.+.. |.+.+-+ +++.+ ..++..+...... ....+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~-----~~~~v~~--------------~D~~~-~~~~~~~~~~~~~~~~~~~~~-- 58 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGN-----PKVVIIS--------------QDSYY-KDLSHEELEERKNNNYDHPDA-- 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC-----CCeEEEE--------------ecccc-cccccccHHHhccCCCCCCCc--
Confidence 4899999999999999999998721 3333322 22211 1122222221110 0011111
Q ss_pred hHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCH
Q 006548 217 QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280 (641)
Q Consensus 217 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~ 280 (641)
...+...+.++.+...+..+. ...+.|.|++++..+ .+.+|+++|+|+|+.+.++
T Consensus 59 ~~~~~~~~~l~~l~~~~~~~~------p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 59 FDFDLLISHLQDLKNGKSVEI------PVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ccHHHHHHHHHHHHCCCCEec------cccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 112234455555544332222 234778888776555 5678999999999999886
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.35 E-value=1e-06 Score=96.77 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=65.1
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCC-
Q 006548 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSE- 178 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~---~~~- 178 (641)
...+..++++..+.. +.++++.++ .+.+||.++|+||||||||||+++|+++.+++. |.|.+.|+ +..
T Consensus 137 p~~~~r~~v~~~l~T----Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~---gvv~liGergrev~e 208 (450)
T PRK06002 137 PPAMTRARVETGLRT----GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDT---VVIALVGERGREVRE 208 (450)
T ss_pred CCCeEeecceEEcCC----CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCe---eeeeecccCCccHHH
Confidence 346788999988853 357888886 899999999999999999999999999988864 88888653 211
Q ss_pred --------CCCceEEEEcCCCc
Q 006548 179 --------MPYGSYGFVERETT 192 (641)
Q Consensus 179 --------~~~~~~~yv~Q~~~ 192 (641)
...+.+++|+|.+.
T Consensus 209 ~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 209 FLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HhHHHHHHhhCCeEEEEEcCCC
Confidence 12256899999765
|
|
| >TIGR01248 drrC daunorubicin resistance protein C | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.8e-06 Score=77.64 Aligned_cols=128 Identities=15% Similarity=0.092 Sum_probs=91.6
Q ss_pred hhHhHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 006548 508 KEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFS--LLMYFVLNFFMCLLVNEGLMLVVA 585 (641)
Q Consensus 508 ~er~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~--~F~~f~l~l~l~~~~~~sl~~~i~ 585 (641)
.|+.++.|-+..-. +...|+++|++...-..+++.++..++.+. .|.+.... .++.+++...+.......++..++
T Consensus 16 r~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a 93 (152)
T TIGR01248 16 REIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMA 93 (152)
T ss_pred HHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556777776666 477899999999998888888877777754 48877632 222333333444455556666666
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 586 SIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 586 ~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
...++.+... ....++.++++.+|.+.|.+.+|+ |+.|+.+++|.+|+.|++
T Consensus 94 ~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~--wlq~ia~~~Plt~~~~~~ 145 (152)
T TIGR01248 94 LRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPD--WAQPLIAHQPISPAIEAC 145 (152)
T ss_pred HHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcH--HHHHHHhhCCccHHHHHH
Confidence 6566655434 346667788888888899999995 888899999999999975
|
The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters. |
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=9.2e-07 Score=105.53 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHHHh--CCcEEEEeCC---CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCE
Q 006548 247 GLPCGERRRVRIARELVM--RPHVLFIDEP---LYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDR 317 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~~--~P~iLlLDEP---tsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~ 317 (641)
++|-=+.....++..|-. +++++|+||| |+.+|..+ .....++.+.+. |.+++++||.+ ++.+++++
T Consensus 666 g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 666 GRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred CcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 667666666666666655 8999999999 88899433 456677777765 58889988884 56777765
|
|
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.2e-05 Score=93.70 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=42.9
Q ss_pred HHHhCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 006548 261 ELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLASTGCTLLFTINQSS 308 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (641)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..+++++|.+.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3456899999999999999 88999999999999988989999888875
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.7e-07 Score=94.75 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=26.5
Q ss_pred eeece-eeEEeCCcEEEEECCCCCcHHHHHHHHH
Q 006548 125 VVKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIA 157 (641)
Q Consensus 125 iL~~v-s~~i~~Ge~~aIiGpsGsGKSTLl~~La 157 (641)
-|+.+ .+=+++|++++|.|++|+|||||...++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 34443 4567899999999999999999988655
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.8e-05 Score=92.90 Aligned_cols=46 Identities=28% Similarity=0.380 Sum_probs=41.4
Q ss_pred HhCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 006548 263 VMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLASTGCTLLFTINQSS 308 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (641)
-.+|+++++|||+.+|| +..+..+.+.++.+++.|.++++++|++.
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 35899999999999999 78899999999999988999999888875
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.6e-06 Score=108.24 Aligned_cols=60 Identities=18% Similarity=0.276 Sum_probs=51.8
Q ss_pred CCCCCHHHHHHHH----HHHH--------HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCC
Q 006548 245 MKGLPCGERRRVR----IARE--------LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (641)
Q Consensus 245 ~~~LSGGerqRv~----IA~a--------L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (641)
..+||||||||++ +|++ +..+|++++|||||+|||+.+...++++++++ |.++|++++..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4689999999996 5655 55899999999999999999999999999988 67888876653
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.2e-05 Score=79.19 Aligned_cols=126 Identities=25% Similarity=0.269 Sum_probs=92.1
Q ss_pred hHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC
Q 006548 511 KTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVA-SIWK 589 (641)
Q Consensus 511 ~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~sl~~~i~-~~~~ 589 (641)
..+.|=..+...+ ..+++++.+...-...+...+...++.+..| ......+..+...+.+......+++.+++ .+..
T Consensus 118 g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 195 (286)
T COG0842 118 GTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLG-VPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKS 195 (286)
T ss_pred CcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444443 4566777777766666666666666666777 33334556666667777777778888555 3667
Q ss_pred CHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 590 DVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 590 ~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
+.+.+..++..+..++++++|.+.|.+.+|. |..|+.++.|.+|+.|++
T Consensus 196 ~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~--~~~~i~~~~P~t~~~~~~ 244 (286)
T COG0842 196 QLQCASAVGNLLILPLGFLSGVFFPLELLPA--WLQGISYINPLTYAIDAL 244 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCchhhhHH--HHHHHHHHccHHHHHHHH
Confidence 7888888888899999999999999999996 777799999999999875
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.1e-06 Score=101.65 Aligned_cols=44 Identities=27% Similarity=0.335 Sum_probs=35.9
Q ss_pred eeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 006548 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (641)
Q Consensus 129 vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G 174 (641)
+++..+.+++++|+|++|+|||||++++.+..... ..|.+++++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeec
Confidence 45666789999999999999999999998765432 358998875
|
syringae 6; Provisional |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-06 Score=84.53 Aligned_cols=63 Identities=22% Similarity=0.212 Sum_probs=40.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----CceEEEEcCCCccCCCCCHHHHHH
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----YGSYGFVERETTLIGSLTVREYLY 204 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----~~~~~yv~Q~~~l~~~lTV~E~l~ 204 (641)
+||+++|+|+||||||||+++|+|++.+ +.++|.+.... ....++.+|+...++..++.+++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 68 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDAS 68 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 6999999999999999999999998754 45666543211 112344445443334444444443
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.1e-05 Score=78.63 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=30.9
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 006548 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
..|+++.+-+.+|+++.|.|++|+|||||+..++...
T Consensus 18 ~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred ceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4566666778899999999999999999998887543
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.6e-06 Score=83.66 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChH-HHHhcCCEEEEEeCC
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST-EVFGLFDRICLLSNG 324 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~-~i~~~~D~v~vL~~G 324 (641)
|+-+|..||..+..+|+.+..+| +.+||.....+.+.+++..++|.+|++.+|.... .....||.+++++.+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 78899999999999999988777 8899999999999999887667788887776532 356789999887643
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.1e-06 Score=70.21 Aligned_cols=48 Identities=27% Similarity=0.419 Sum_probs=36.9
Q ss_pred CCCCCHHHHH-HHHHHHHHH------h------CCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006548 245 MKGLPCGERR-RVRIARELV------M------RPHVLFIDEPLYHLDSVSALLMMVTLKK 292 (641)
Q Consensus 245 ~~~LSGGerq-Rv~IA~aL~------~------~P~iLlLDEPtsgLD~~~~~~i~~~L~~ 292 (641)
..++|||||| .+.++.+++ . .|++++||||+++||......++++|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3589999994 444444332 2 3799999999999999999999999874
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.2e-06 Score=93.80 Aligned_cols=112 Identities=19% Similarity=0.178 Sum_probs=70.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhc
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSA-----RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~-----~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (641)
.+.++|+||||+|||||+++|.+..++.. ...+-|.++|.......+. + .+-.++
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~---------------i-~~~llg---- 234 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE---------------V-TNPLLG---- 234 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH---------------H-hHHhcC----
Confidence 56799999999999999999998765321 0013355655432100000 0 011110
Q ss_pred CCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 006548 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290 (641)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L 290 (641)
.......+...+.++.+|+.+..+..+ ..+||| +||||| +..||...+..+.+.|
T Consensus 235 --~~~~~~~~~a~~~l~~~gl~~~~~g~v------~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~L 289 (615)
T TIGR02903 235 --SVHDPIYQGARRDLAETGVPEPKTGLV------TDAHGG----------------VLFIDE-IGELDPLLQNKLLKVL 289 (615)
T ss_pred --CccHHHHHHHHHHHHHcCCCchhcCch------hhcCCC----------------eEEEec-cccCCHHHHHHHHHHH
Confidence 000011223455677888876665544 478888 999999 7999999999999988
Q ss_pred HH
Q 006548 291 KK 292 (641)
Q Consensus 291 ~~ 292 (641)
++
T Consensus 290 e~ 291 (615)
T TIGR02903 290 ED 291 (615)
T ss_pred hh
Confidence 75
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.5e-06 Score=66.10 Aligned_cols=35 Identities=46% Similarity=0.485 Sum_probs=27.8
Q ss_pred ceeeEEeC-CcEEEEECCCCCcHHHHHHHHHcCCCC
Q 006548 128 SSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (641)
Q Consensus 128 ~vs~~i~~-Ge~~aIiGpsGsGKSTLl~~LaG~~~~ 162 (641)
+..+.+.+ |+++.|.|+||||||||+++|.=.+-+
T Consensus 14 ~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 14 GETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred CeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34555555 679999999999999999999866544
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=98.00 E-value=2e-05 Score=85.08 Aligned_cols=116 Identities=21% Similarity=0.213 Sum_probs=63.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----ceEEEEcCCCccCCCCCHHHHHHHHHHh
Q 006548 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY----GSYGFVERETTLIGSLTVREYLYYSALL 209 (641)
Q Consensus 134 ~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~yv~Q~~~l~~~lTV~E~l~~~~~~ 209 (641)
++|.+++|.||+||||||+|++|++.+.+.....+.|.....+.+... ...+.+.|...--...+..+.+.-..+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR- 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR- 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhc-
Confidence 478999999999999999999999987432101135554444432211 124667775431112345555544322
Q ss_pred cCCCc----cchHHHHHHHHHHHc-------------CCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 210 QLPGF----FCQRKNVVEDAIHAM-------------SLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 210 ~~~~~----~~~~~~~v~~~l~~l-------------gL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
+.|.. ..+..+.++.+++.. +..+..++.+. .+|||||--+
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlHa~~~~~~i~Rl~~------~~~~~~~~~~ 268 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAALEAALTGHPVYTTLHSSGVAETIRRLVG------SFPAEERIGR 268 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeeccCCHHHHHHHHHH------hCCccchhhH
Confidence 22321 112344456666662 33344555543 5777776444
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.7e-05 Score=72.51 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHH--HHHHHHh-CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 006548 246 KGLPCGERRRVR--IARELVM-RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 296 (641)
Q Consensus 246 ~~LSGGerqRv~--IA~aL~~-~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~ 296 (641)
..+++||+|++. +++.+-. ++++ .|+|++|.....++.+.|.++.++
T Consensus 146 Dl~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 146 DKLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 368999999987 5555543 3444 399999999999999999988765
|
|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.6e-05 Score=87.79 Aligned_cols=64 Identities=16% Similarity=0.257 Sum_probs=48.5
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeC--------------ChHHHHhcCCEEEEEeCCeE-
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ--------------SSTEVFGLFDRICLLSNGNT- 326 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~--------------~~~~i~~~~D~v~vL~~G~i- 326 (641)
|..+|+++++||.-..-| ++++..++..|..++.|+|- ....+...+|+|+.+++|++
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I~ 393 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEVS 393 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEEE
Confidence 678999999999985332 45555565567778888882 33467789999999999999
Q ss_pred -EEEeCh
Q 006548 327 -LFFGET 332 (641)
Q Consensus 327 -v~~G~~ 332 (641)
+|++..
T Consensus 394 ~v~~~~~ 400 (602)
T PRK13764 394 KVYDLEF 400 (602)
T ss_pred EEEeeee
Confidence 777763
|
|
| >TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00054 Score=70.09 Aligned_cols=190 Identities=13% Similarity=0.129 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHh
Q 006548 436 AVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGL----GHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIK 511 (641)
Q Consensus 436 ~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l----~~~~~~~~~r~g~lff~~~~~~~~~~~~v~~~~~er~ 511 (641)
+.+.+|.++.+.|.|..+..-.+..++.|+.. ..|.+. ..+..+... ||... .+..+..+|.. -..
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~-----~f~~~--~~~~~~~~p~l--~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTP-----FFSLA--PWVFLFLIPAI--TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHH-----HHHHH--HHHHHHHHHHH--HHH
Confidence 46789999999999999988888877777543 222110 111111111 11111 11111112222 225
Q ss_pred HHHhhccCCCc--------chHHHHHHHHHHHHHHHHHHHH---hhhhhhhcccc--ccccHHHHHHHHHHHHHHHHHHH
Q 006548 512 TYASEESNMHS--------GALVFLLGQLLSSIPFLFLISI---SSSLVFYFLVG--LRDEFSLLMYFVLNFFMCLLVNE 578 (641)
Q Consensus 512 vf~rE~~~~~Y--------~~~~y~la~~l~elP~~~~~~~---if~~i~Y~m~G--l~~~~~~F~~f~l~l~l~~~~~~ 578 (641)
.+.+||++|.. +...+.+||.++-+-..++..+ ++....++... -..+...++..++.+++...+..
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYT 151 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHH
Confidence 56677777764 3477889999987655443322 22222222211 11244455545555566666788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhh
Q 006548 579 GLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIK 638 (641)
Q Consensus 579 sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e 638 (641)
++|.++++++.+...|..++..+... ++.|+-. ...++.+.|..|+.|+||.+|-.+
T Consensus 152 aig~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~ 208 (240)
T TIGR03518 152 AIGLFASSLTENQIVAFIIAVFLCFL--FYFGFDG-LASLLWGGSAYTISELGLSYHYES 208 (240)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHH--HHHHHHH-HhhhcchhHHHHHHHcCHHHHHHH
Confidence 99999999999998887655443222 2223211 223322236667999999665433
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.7e-05 Score=82.73 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=43.5
Q ss_pred hCCcEEEEeCCCCCC----C-----HHHHHHHHHHHHHHH-HcCCEEEEEEeCChH-------HHHhcCCEEEEEeCCe
Q 006548 264 MRPHVLFIDEPLYHL----D-----SVSALLMMVTLKKLA-STGCTLLFTINQSST-------EVFGLFDRICLLSNGN 325 (641)
Q Consensus 264 ~~P~iLlLDEPtsgL----D-----~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~-------~i~~~~D~v~vL~~G~ 325 (641)
.+|+++++|.-++=. + ....++++..|.+++ +.|.|++++.|...+ .+.+++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 479999999876521 1 233456666777776 459999998775432 2567899999998654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.3e-06 Score=76.27 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHHHH-----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006548 246 KGLPCGERRRVRIARELV-----MRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~-----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l 293 (641)
..++++++++........ ..|+++ |+|++|.....++++.|.++
T Consensus 121 D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 121 DKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred hcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 357889888876665533 345555 99999999999999988764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.1e-05 Score=86.54 Aligned_cols=107 Identities=15% Similarity=0.102 Sum_probs=68.4
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCC------C--CCceEEEE---
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSE------M--PYGSYGFV--- 187 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~---~~~------~--~~~~~~yv--- 187 (641)
+.++++++ +.+.+||.++|+|+||+|||||+++|+|..+... .|.|.+.|+ +.. . .....+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~--~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvva 227 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEAD--VNVIALIGERGREVREFIEGDLGEEGMKRSVIVVS 227 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCC--ceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEe
Confidence 35688988 9999999999999999999999999999875421 267777553 210 0 11223444
Q ss_pred --cCCC--ccCCCCCHHHHHHHHHHhcCCC--ccchHHHHHHHHHHHcCCc
Q 006548 188 --ERET--TLIGSLTVREYLYYSALLQLPG--FFCQRKNVVEDAIHAMSLS 232 (641)
Q Consensus 188 --~Q~~--~l~~~lTV~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~ 232 (641)
+|++ .+.+.+ +...+....+.+... ...+...++.+++++++|.
T Consensus 228 ts~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 228 TSDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 7765 344444 444444333322111 0123566788999999984
|
|
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0002 Score=77.85 Aligned_cols=79 Identities=18% Similarity=0.283 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCC-----CHHHHHHH----------HHHHHHHH-HcCCEEEEEEeCChHH
Q 006548 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHL-----DSVSALLM----------MVTLKKLA-STGCTLLFTINQSSTE 310 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgL-----D~~~~~~i----------~~~L~~l~-~~g~tvi~t~h~~~~~ 310 (641)
+=||-.-|=..|..||=...++||+||=||+- |...+..+ .+.++.|. +.|.+.|+++-- +..
T Consensus 322 ~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgd 400 (448)
T PF09818_consen 322 NASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGD 400 (448)
T ss_pred CCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc-chh
Confidence 57999999999999999999999999999975 55555544 56677775 458877776644 467
Q ss_pred HHhcCCEEEEEeCCeE
Q 006548 311 VFGLFDRICLLSNGNT 326 (641)
Q Consensus 311 i~~~~D~v~vL~~G~i 326 (641)
.+..+|+|++|++=+.
T Consensus 401 y~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 401 YFDVADRVIMMDEYRP 416 (448)
T ss_pred hHhhCCEEEEecCccc
Confidence 8899999999987653
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.5e-05 Score=87.52 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=48.0
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~ 177 (641)
+.++++++ +.+.+||.++|+|+||+|||||+++|++...++..+.|.|-.+|.+.
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev 192 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREV 192 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccH
Confidence 45799999 99999999999999999999999999998877644558898888753
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.8e-05 Score=70.99 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCEEEEEEeCC
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-----TGCTLLFTINQS 307 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tvi~t~h~~ 307 (641)
+..........++.++++||.-.. +......+.+.+..... .+..+|++++.+
T Consensus 73 ~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 73 VRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred HhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 344445566678999999998765 56667778888887753 467777776654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00015 Score=73.04 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=43.9
Q ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh--------HHHHhcCCEEEEEe
Q 006548 265 RPHVLFIDEPLY------HLDSVSALLMMVTLKKLASTGCTLLFTINQSS--------TEVFGLFDRICLLS 322 (641)
Q Consensus 265 ~P~iLlLDEPts------gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~--------~~i~~~~D~v~vL~ 322 (641)
+++++++| +.+ +.|...+..+.++++.+++.|.|+++++|... ..+..+||.|++|+
T Consensus 107 ~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 107 GASRVVID-PISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred CCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 68889999 433 44566677888899999888999999888531 23577899999994
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 641 | ||||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 4e-14 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 4e-14 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 8e-14 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 8e-13 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-12 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-10 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-10 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-10 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 6e-10 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-09 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 4e-09 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 6e-09 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 9e-09 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-08 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-08 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-08 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-08 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 7e-08 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 8e-08 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 9e-08 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-07 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-07 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 5e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 9e-07 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-06 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 6e-06 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 6e-06 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 7e-06 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 8e-06 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 9e-06 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 1e-05 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-05 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-05 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-05 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-05 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 2e-05 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-05 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-05 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-05 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 5e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 7e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 4e-04 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 4e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 7e-04 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 9e-04 |
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 4e-23
Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 35/196 (17%)
Query: 143 GPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG---------AKSEMPYGSYGFVERETTL 193
GP +GK+T LR I+ + S+ G V V G + + ++ E
Sbjct: 48 GPNGAGKTTTLRIISTLIKPSS---GIVTVFGKNVVEEPHEVRKLI-----SYLPEEAGA 99
Query: 194 IGSLTVREYL-YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252
++ EYL + + + + +VE A L + + Y KG+
Sbjct: 100 YRNMQGIEYLRFVAGFYASSS--SEIEEMVERATEIAGLGEKIKDRVST--YSKGM---- 151
Query: 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST--- 309
R++ IAR L++ P + +DEP LD ++A + LK+ + G T+L + +
Sbjct: 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS-----SHNM 206
Query: 310 -EVFGLFDRICLLSNG 324
EV L DRI L+ NG
Sbjct: 207 LEVEFLCDRIALIHNG 222
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 3e-21
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 51/213 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY---------G 185
G + ++GP +GKSTLL +AG G + G P ++
Sbjct: 25 AGEILHLVGPNGAGKSTLLARMAGMTSGK----GSIQFAGQ----PLEAWSATKLALHRA 76
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG---GH 242
++ ++ T + V YL L Q R ++ D A++L D + G
Sbjct: 77 YLSQQQTPPFATPVWHYL---TLHQHDK---TRTELLNDVAGALALDDKLGRSTNQLSG- 129
Query: 243 CYMKGLPCGERRRVRIARELV-------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS 295
GE +RVR+A ++ +L +DEP+ LD + L L+
Sbjct: 130 --------GEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ 181
Query: 296 TGCTLLFT---INQSSTEVFGLF-DRICLLSNG 324
G ++ + +N + R LL G
Sbjct: 182 QGLAIVMSSHDLNHTL-----RHAHRAWLLKGG 209
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 4e-21
Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 42/221 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET-TL 193
G ++ G +GK+TLL + P ++ G V + G G G+
Sbjct: 46 KGDKWILYGLNGAGKTTLLNILNAYEPATS---GTVNLFG----KMPGKVGYSAETVRQH 98
Query: 194 IG------------SLTVREYLYYSALLQLPGFFCQR----KNVVEDAIHAMSLSDYANK 237
IG V + + S + G + +N + + +S A +
Sbjct: 99 IGFVSHSLLEKFQEGERVIDVVI-SGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQ 157
Query: 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG 297
IG L GE++RV IAR L+ +P VL +DEP LD ++ ++ L L+ +
Sbjct: 158 YIGY------LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSY 211
Query: 298 --CTLLFTINQSST----EVFGLFDRICLLSNGNTLFFGET 332
+++ T E+ F +I LL +G ++ G
Sbjct: 212 PTLAMIYV-----THFIEEITANFSKILLLKDGQSIQQGAV 247
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 91.0 bits (227), Expect = 4e-21
Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 37/224 (16%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+DL+ Y V++ G + GP GK+TLL+ I+ L G
Sbjct: 14 RDLS------VGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK---G 64
Query: 169 EVFVNG-----AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALL-QLPGFFCQRKNVV 222
E+ NG K ++ F+ E + ++V +YL A L + KN +
Sbjct: 65 EIIYNGVPITKVKGKI-----FFLPEEIIVPRKISVEDYLKAVASLYGVKV----NKNEI 115
Query: 223 EDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
DA+ ++ + D KL L G RRV++A L++ + +D+P+ +D S
Sbjct: 116 MDALESVEVLDLKKKL-------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168
Query: 283 ALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
++ ++ ++ G ++ + E D L +
Sbjct: 169 KHKVLKSILEILKEKGIVIISS-----REELSYCDVNENLHKYS 207
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 2e-20
Identities = 52/226 (23%), Positives = 101/226 (44%), Gaps = 31/226 (13%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
K++ +T+ GK Y +++ N + G +I+GP SGK+TLLRAI+G LP+S G
Sbjct: 5 KNVGITLSGKG-YERFSLENIN-LEVNGEKVIILGPNGSGKTTLLRAISGLLPYS----G 58
Query: 169 EVFVNGAK-SEMPYGSYGFVERETTLIGS----LTVREYLYYSALLQLPGFFCQRKNVVE 223
+F+NG + ++ + T L + +TV + +Y +L G +++
Sbjct: 59 NIFINGMEVRKIR-NYIRYS---TNLPEAYEIGVTVNDIVYL--YEELKGL---DRDLFL 109
Query: 224 DAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
+ + A+ L + + + L G+ VR + L +P ++ +DEP ++D+
Sbjct: 110 EMLKALKLGEEILRR------KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 283 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328
++ +K+ +L T + + GN L
Sbjct: 164 RHVISRYIKEYGKE--GILVTHELD--MLNLYKEYKAYFLVGNRLQ 205
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 9e-20
Identities = 51/243 (20%), Positives = 90/243 (37%), Gaps = 59/243 (24%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
+ +++ L + G + ++G GKSTLL + G
Sbjct: 16 AENFLFQQLNFDLN------------------KGDILAVLGQNGCGKSTLLDLLLGIHRP 57
Query: 163 SARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY-LY----YSALLQLPGFFCQ 217
G++ V Y S GFV + + + +V + L + P
Sbjct: 58 IQ---GKIEV--------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPK---S 103
Query: 218 R-KNVVEDAIHAMSLSDYANKLIG---GHCYMKGLPCGERRRVRIARELVMRPHVLFIDE 273
V A+ ++L+ A + G G+R+ + IAR + ++ +DE
Sbjct: 104 HDYQVAMQALDYLNLTHLAKREFTSLSG---------GQRQLILIARAIASECKLILLDE 154
Query: 274 PLYHLDSVSALLMMVTLKKLAST-GCTLLFT---INQSSTEVFGLFDRICLLSNGNTLFF 329
P LD + +++ L LA + T++FT NQ V + ++ LL N F
Sbjct: 155 PTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ----VVAIANKTLLL-NKQNFKF 209
Query: 330 GET 332
GET
Sbjct: 210 GET 212
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 6e-17
Identities = 33/194 (17%), Positives = 59/194 (30%), Gaps = 37/194 (19%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK- 176
++ D + NG A G + I+GP GK+T R + G + G V
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE---GSVTPEKQIL 332
Query: 177 -------SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM 229
G TV++YL E+ +
Sbjct: 333 SYKPQRIFPNYDG---------------TVQQYL----ENASKDALSTSSWFFEEVTKRL 373
Query: 230 SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 289
+L + L GE +++ IA L + +D+P +LD ++
Sbjct: 374 NLHRLLES------NVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKA 427
Query: 290 LKKLA-STGCTLLF 302
+K++
Sbjct: 428 IKRVTRERKAVTFI 441
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 5e-08
Identities = 35/223 (15%), Positives = 77/223 (34%), Gaps = 35/223 (15%)
Query: 120 RYSDKVVKSSNGYALP----GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNG 174
RY K + LP T+ ++G GK+T+L+ +AG + P+ +V +
Sbjct: 8 RYKVNGFK---LFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDE 64
Query: 175 AKSEMPYGSYGFVERE--TTLIGSL-------TVREYLYYSALLQLPGFFCQRKNVVEDA 225
+E + + + ++L + L + ++
Sbjct: 65 VLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKI--DERGKKDEV 122
Query: 226 IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285
+++++ NK L G +R+ +A L+ V D+P +LD +
Sbjct: 123 KELLNMTNLWNK------DANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMN 176
Query: 286 MMVTLKKLASTGCTLLFTINQSST----EVFGLFDRICLLSNG 324
M +++L ++ + L D I ++
Sbjct: 177 MAKAIRELL-KNKYVIV-----VDHDLIVLDYLTDLIHIIYGE 213
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 2e-16
Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 24/229 (10%)
Query: 76 PSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKG-KRRYSDKVVKSSNGYAL 134
+ + +L +A + K+ D V+ G
Sbjct: 317 FLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFS 376
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
+ V+MG +GK+TL++ +AG L G+ S P ++
Sbjct: 377 DSEILVMMGENGTGKTTLIKLLAGALKPDE---GQDIPKLNVSMKP--------QKIAPK 425
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254
TVR+ + Q D + + + D ++ ++ L GE +
Sbjct: 426 FPGTVRQLFFKKIRGQF-----LNPQFQTDVVKPLRIDDIIDQ------EVQHLSGGELQ 474
Query: 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLF 302
RV I L + + IDEP +LDS ++ +++ T
Sbjct: 475 RVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 32/209 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY------GEVFVNGAKSEMPYGSYGFVE 188
PG + ++G GKST L+ +AG+ + + E+ SE+ +E
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161
Query: 189 RE---------TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLI 239
+ I LL+L + V+ I + L + +
Sbjct: 162 DDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME--KSPEDVKRYIKILQLENVLKR-- 217
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
++ L GE +R I V V DEP +LD L ++ L +
Sbjct: 218 ----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKY 273
Query: 300 LLFTINQSST----EVFGLFDRICLLSNG 324
++ + L D +C++
Sbjct: 274 VIC-----VEHDLSVLDYLSDFVCIIYGV 297
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 2e-16
Identities = 41/227 (18%), Positives = 78/227 (34%), Gaps = 30/227 (13%)
Query: 78 LSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGT 137
L N P + + ++V + + Y ++ G G
Sbjct: 329 LKDENVRFRPYEIRFTKLSERVDVERETLVEYP-----RLVKDYGSFKLEVEPGEIRKGE 383
Query: 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMPYGSYGFVERETTLIGS 196
+ I+GP GK+T ++ +AG + G+V + + + Y +
Sbjct: 384 VIGIVGPNGIGKTTFVKMLAGVEEPTE---GKVEWDLTVAYKPQYIKAEY---------E 431
Query: 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256
TV E L +L + + + + D ++ ++ L GE +RV
Sbjct: 432 GTVYELLSKIDSSKLN-----SNFYKTELLKPLGIIDLYDR------NVEDLSGGELQRV 480
Query: 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLF 302
IA L+ + +DEP +LD L + ++ L T L
Sbjct: 481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 527
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 4e-11
Identities = 42/200 (21%), Positives = 76/200 (38%), Gaps = 33/200 (16%)
Query: 120 RYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLPHS---ARMYGEVFVNGA 175
RY + G + I+GP +GK+T ++ +AG+L + + +
Sbjct: 100 RYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159
Query: 176 K-SEMPY-------GSYGFVERE--TTLIGSLT---VREYLYYSALLQLPGFFCQRKNVV 222
+ +E+ G V + L+ VRE L
Sbjct: 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV----------DEVGKF 209
Query: 223 EDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
E+ + + L + ++ + L GE +RV IA L+ + H F DEP +LD
Sbjct: 210 EEVVKELELENVLDR------ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263
Query: 283 ALLMMVTLKKLASTGCTLLF 302
L + +++LA+ G +L
Sbjct: 264 RLKVARVIRRLANEGKAVLV 283
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 2e-15
Identities = 41/228 (17%), Positives = 78/228 (34%), Gaps = 32/228 (14%)
Query: 78 LSKLNSGSLPSPPLPEGAAVARKIAGASVV-WKDLTVTIKGKRRYSDKVVKSSNGYALPG 136
L N P +I ++V + L + Y ++ G G
Sbjct: 259 LKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLV------KDYGSFRLEVEPGEIKKG 312
Query: 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMPYGSYGFVERETTLIG 195
+ I+GP GK+T ++ +AG + G++ + + + Y +
Sbjct: 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKIEWDLTVAYKPQYIKADY--------- 360
Query: 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255
TV E L ++ + + + + D ++ + L GE +R
Sbjct: 361 EGTVYELL-----SKIDASKLNSNFYKTELLKPLGIIDLYDR------EVNELSGGELQR 409
Query: 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLF 302
V IA L+ + +DEP +LD L + ++ L T L
Sbjct: 410 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 457
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 44/221 (19%), Positives = 80/221 (36%), Gaps = 38/221 (17%)
Query: 120 RYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLP---HSARMYGEVFVNGA 175
RY + G + I+GP +GKST ++ +AG+L + +
Sbjct: 30 RYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAF 89
Query: 176 K-SEMPYGSYGFVERE---------TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDA 225
+ +E+ E LI + + LL+ +E+
Sbjct: 90 RGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIE---LLKKA----DETGKLEEV 142
Query: 226 IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285
+ A+ L + + ++ L GE +RV IA L+ F DEP +LD L
Sbjct: 143 VKALELENVLER------EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLN 196
Query: 286 MMVTLKKLASTGCTLLFTINQSSTE-----VFGLFDRICLL 321
+++L+ G ++L E + L D I ++
Sbjct: 197 AARAIRRLSEEGKSVLV------VEHDLAVLDYLSDIIHVV 231
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 3e-13
Identities = 50/219 (22%), Positives = 91/219 (41%), Gaps = 44/219 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVE-R---- 189
G +T I+G GKSTL + G L S+ G + + + Y G ++ R
Sbjct: 33 RGEVTAILGGNGVGKSTLFQNFNGILKPSS---GRILFDN--KPIDYSRKGIMKLRESIG 87
Query: 190 ------ETTLIGSLTVREYLYYSAL-LQLPGFFCQRKNVVEDAIHAMSLSDYANK----L 238
+ L + +V + + + A+ ++LP +++ V++A+ + +K L
Sbjct: 88 IVFQDPDNQLFSA-SVYQDVSFGAVNMKLPEDEIRKR--VDNALKRTGIEHLKDKPTHCL 144
Query: 239 IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTG 297
G +++RV IA LVM P VL +DEP LD + +M L ++ G
Sbjct: 145 SFG----------QKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG 194
Query: 298 CTLLFTINQSST----EVFGLFDRICLLSNGNTLFFGET 332
T++ +T V D + ++ G + G
Sbjct: 195 ITII-----IATHDIDIVPLYCDNVFVMKEGRVILQGNP 228
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 4e-13
Identities = 49/214 (22%), Positives = 88/214 (41%), Gaps = 29/214 (13%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY--GSYGFV--ERET 191
G ++ G SGKSTLL+ +AG + ++ G+V +G + + + G E
Sbjct: 33 GECLLVAGNTGSGKSTLLQIVAGLIEPTS---GDVLYDGERKKGYEIRRNIGIAFQYPED 89
Query: 192 TLIGSLTVREYLYYSAL-LQLPGFFCQRKNVVEDAIHA--MSLSDYANK----LIGGHCY 244
V + + ++ V+ A+ + + ++ L GG
Sbjct: 90 QFFAE-RVFDEVAFAVKNFYPDRDPVPL---VKKAMEFVGLDFDSFKDRVPFFLSGG--- 142
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 304
E+RRV IA +V P +L +DEPL LD ++ ++K + G T++ I
Sbjct: 143 -------EKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVIL-I 194
Query: 305 NQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
+ V DR+ +L G +F G + L+
Sbjct: 195 SHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 7e-13
Identities = 54/188 (28%), Positives = 77/188 (40%), Gaps = 41/188 (21%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAK---------SEMPYGS 183
G I+G + SGKSTLL I G L P G+VF+ G + S +
Sbjct: 29 KGEFVSIIGASGSGKSTLLY-ILGLLDAPTE----GKVFLEGKEVDYTNEKELSLLRNRK 83
Query: 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFC-----QRKNVVEDAIHAMSLSDYA--- 235
GFV + LI LT E + +P + K E + + L D
Sbjct: 84 LGFVFQFHYLIPELTALENV------IVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRK 137
Query: 236 -NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
+L GG E++RV IAR L P +LF DEP +LDS + +M K+
Sbjct: 138 PYELSGG----------EQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 295 STGCTLLF 302
G +++
Sbjct: 188 EGGTSIVM 195
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 7e-13
Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 25/193 (12%)
Query: 140 VIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK--SEMPYG-SYGFVERETTLIGS 196
V++GP +GKS L IAG + GEV +NGA P GFV ++ L
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDR---GEVRLNGADITPLPPERRGIGFVPQDYALFPH 84
Query: 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256
L+V + Y L + +R V + + ++ ++ L GER+RV
Sbjct: 85 LSVYRNIAY-GLRNVER--VERDRRVREMAEKLGIAHLLDR------KPARLSGGERQRV 135
Query: 257 RIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEV 311
+AR LV++P +L +DEPL +D +M L+ + +L T + E
Sbjct: 136 ALARALVIQPRLLLLDEPLSAVD---LKTKGVLMEELRFVQREFDVPILHVTHDLI--EA 190
Query: 312 FGLFDRICLLSNG 324
L D + ++ NG
Sbjct: 191 AMLADEVAVMLNG 203
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 9e-12
Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 38/189 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAK-SEMPY--------GS 183
G IMGP+ SGKST+L I G L P GEV+++ K +++
Sbjct: 30 EGEFVSIMGPSGSGKSTMLN-IIGCLDKPTE----GEVYIDNIKTNDLDDDELTKIRRDK 84
Query: 184 YGFVERETTLIGSLTVREY----LYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-----Y 234
GFV ++ LI LT E L + + G +R+ + + L +
Sbjct: 85 IGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG--EERRKRALECLKMAELEERFANHK 142
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL- 293
N+L GG +++RV IAR L P ++ D+P + LDS + +M LKKL
Sbjct: 143 PNQLSGG----------QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192
Query: 294 ASTGCTLLF 302
G T++
Sbjct: 193 EEDGKTVVV 201
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 49/208 (23%), Positives = 86/208 (41%), Gaps = 39/208 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFV---ERET 191
PG + I+G + GK+TLLR +AG + GE+ ++G + + + ER
Sbjct: 29 PGEILFIIGASGCGKTTLLRCLAGFEQPDS---GEISLSG---KTIFSKNTNLPVRERR- 81
Query: 192 TLIGS----------LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG 241
+G LTV + Y L G Q + +E + +S+ A +
Sbjct: 82 --LGYLVQEGVLFPHLTVYRNIAY-GLGNGKGRTAQERQRIEAMLELTGISELAGR---- 134
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKKL-ASTG 297
Y L G+++R +AR L P ++ +DEP LD L + + + G
Sbjct: 135 --YPHELSGGQQQRAALARALAPDPELILLDEPFSALD---EQLRRQIREDMIAALRANG 189
Query: 298 CTLLF-TINQSSTEVFGLFDRICLLSNG 324
+ +F + ++ E DRI ++ G
Sbjct: 190 KSAVFVSHDRE--EALQYADRIAVMKQG 215
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 55/235 (23%)
Query: 113 VTIKG-KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171
+ I+ R++ + + + + G VI+GP +GK+ L IAG + G +
Sbjct: 2 IEIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS---GRIL 58
Query: 172 VNGAKSEM----PYGSYGFVERETTLIGS----------LTVREYLYYSALLQLPGFFCQ 217
++G ++ P + + I + V++ L + +++ +
Sbjct: 59 LDGK--DVTDLSPE------KHD---IAFVYQNYSLFPHMNVKKNLEFG--MRMKKI--K 103
Query: 218 RKNVVEDAIHAMSLSDYANKLIG---GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
V D + + ++ G GE++RV +AR LV P +L +DEP
Sbjct: 104 DPKRVLDTARDLKIEHLLDRNPLTLSG---------GEQQRVALARALVTNPKILLLDEP 154
Query: 275 LYHLDSVSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNG 324
L LD L L T+L T +Q+ E + DRI ++ +G
Sbjct: 155 LSALD---PRTQENAREMLSVLHKKNKLTVLHITHDQT--EARIMADRIAVVMDG 204
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 6e-09
Identities = 51/236 (21%), Positives = 98/236 (41%), Gaps = 44/236 (18%)
Query: 112 TVTIKG-KRRYSDKVVKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRL--PHSAR 165
+ +K + + V + + + G I+GP+ +GK+T +R IAG L P +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPSTGE 61
Query: 166 MY-GEVFVNGAKSE----------MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214
+Y + V M + ++ L +LT E + + L
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWA-------LYPNLTAFENIAFP--LTNMKM 112
Query: 215 F-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDE 273
+ + VE+ + + N + + L +++RV +AR LV P +L +DE
Sbjct: 113 SKEEIRKRVEEVAKILDIHHVLNH------FPRELSGAQQQRVALARALVKDPSLLLLDE 166
Query: 274 PLYHLDSVSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNG 324
P +LD A + +K++ + G TLL + + ++F + DR+ +L G
Sbjct: 167 PFSNLD---ARMRDSARALVKEVQSRLGVTLLVVSHDP--ADIFAIADRVGVLVKG 217
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 9e-09
Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 32/230 (13%)
Query: 110 DLTVTIKG-KRRYSDK--VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARM 166
+T+ G ++ Y V+ + G M ++GP+ SGK+T+LR IAG +
Sbjct: 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTK-- 69
Query: 167 YGEVFVNGAK-SEMPYGSY----GFVERETTLIGSLTVREYLYYSALLQLPGF-FCQRKN 220
G+V++ G + +++P G V + L +TV + + + L+ +
Sbjct: 70 -GDVWIGGKRVTDLP--PQKRNVGLVFQNYALFQHMTVYDNVSFG--LREKRVPKDEMDA 124
Query: 221 VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
V + + M L YAN+ + G G+++RV +AR L RP VL DEP +D
Sbjct: 125 RVRELLRFMRLESYANRFPHE---LSG---GQQQRVALARALAPRPQVLLFDEPFAAID- 177
Query: 281 VSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNGN 325
+ + ++++ G T +F T +Q E + DR+ +L GN
Sbjct: 178 --TQIRRELRTFVRQVHDEMGVTSVFVTHDQE--EALEVADRVLVLHEGN 223
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 34/183 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET--- 191
G + V++GP+ SGKST LR + GE+ ++G + + V E
Sbjct: 49 EGEVVVVIGPSGSGKSTFLRCLNLLEDFDE---GEIIIDGINLKAKDTNLNKVREEVGMV 105
Query: 192 ----TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS---LSDYANKLIGGHCY 244
L +TV + A +++ + R+ A+ + L D A+ Y
Sbjct: 106 FQRFNLFPHMTVLNNITL-APMKVRKW--PREKAEAKAMELLDKVGLKDKAHA------Y 156
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL-LMMV-----TLKKLASTGC 298
L G+ +RV IAR L M P ++ DEP SAL MV +K+LA+ G
Sbjct: 157 PDSLSGGQAQRVAIARALAMEPKIMLFDEP------TSALDPEMVGEVLSVMKQLANEGM 210
Query: 299 TLL 301
T++
Sbjct: 211 TMV 213
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 3e-08
Identities = 48/223 (21%), Positives = 79/223 (35%), Gaps = 46/223 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSYGFVER---- 189
G +T+I+GP SGKSTL+ I G L G V+ +
Sbjct: 32 KGDVTLIIGPNGSGKSTLINVITGFLKADE---GRVYFENKDITNKE--PAELYHYGIVR 86
Query: 190 ---ETTLIGSLTVRE-----------YLYYSALLQLPGFFCQRKNVVEDAIHA---MSLS 232
+ +TV E S + + + +VE A + LS
Sbjct: 87 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFY--KKWIPKEEEMVEKAFKILEFLKLS 144
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
++ G L G+ + V I R L+ P ++ +DEP+ + A + + +
Sbjct: 145 HLYDRKAGE------LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 293 LASTGCTLLFTINQSSTE-----VFGLFDRICLLSNGNTLFFG 330
L + G T L I E V D + ++ NG + G
Sbjct: 199 LKAKGITFLI-I-----EHRLDIVLNYIDHLYVMFNGQIIAEG 235
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 5e-08
Identities = 38/197 (19%), Positives = 72/197 (36%), Gaps = 33/197 (16%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+DL + ++ + I GP GKSTL+RAIA ++ G
Sbjct: 434 EDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG-----QVDG 488
Query: 169 EVFVNGAKSEMPYGSYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIH 227
++ +VE + +V ++++ S + K ++D +
Sbjct: 489 FPTQEECRT-------VYVEHDIDGTHSDTSVLDFVFESGV--------GTKEAIKDKLI 533
Query: 228 AMSLSDYA-NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286
+D I L G + ++ +AR ++ +L +DEP HLD +
Sbjct: 534 EFGFTDEMIAMPISA------LSGGWKMKLALARAVLRNADILLLDEPTNHLD----TVN 583
Query: 287 MVTLKK-LASTGCTLLF 302
+ L L + G T +
Sbjct: 584 VAWLVNYLNTCGITSIT 600
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 7e-06
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD--SVSAL 284
H ++GL G++ ++ +A RPH++ +DEP +LD S+ AL
Sbjct: 896 HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL 940
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 6e-08
Identities = 75/531 (14%), Positives = 154/531 (29%), Gaps = 138/531 (25%)
Query: 105 SVVWKDLTVTIKGKRRYSDKVVKSSNG-YAL-PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
++ D V K +K L P +I G SGK+ + +
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 163 SARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVV 222
+M ++F + + T++ L + L Y Q+ + R +
Sbjct: 177 QCKMDFKIF---------WLNLKNCNSPETVLEML---QKLLY----QIDPNWTSRSDHS 220
Query: 223 EDAIHAM-SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
+ + S+ +L+ Y L LV+ +V + +
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCL-------------LVLL-NV-------QNAKAW 259
Query: 282 SALLMMVTLKKLASTGC-TLLFTINQSSTEVFGLFDR--ICLLSNGNTLFFGETLACLQH 338
+A + C LL T + T+ I L + TL E + L
Sbjct: 260 NAF----------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 339 FSNAGF---P---CPIMQSP----------SDH-----FLRAINTD-FDRIIAMC----- 371
+ + P +P D + +N D II
Sbjct: 310 YLDCRPQDLPREVLTT--NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 372 -KSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI-----LRLTEKEGP---- 421
++ S + L + + V ++ L EK+
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV-IKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 422 -----FLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCM--ILTLCV-GTVFSG 473
+L+ K K + + RS++ +Y + ++ + +S
Sbjct: 427 SIPSIYLELKVKLENEYALH----RSIV------DHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 474 LGHSLSSV-VTRVAAIF--VFVSFN-----------SLLNIAGVPALMKEIKTYASEESN 519
+GH L ++ +F VF+ F + + ++++K Y +
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 520 MHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNF 570
+ L+ +L FL I +L+ +++ L+ L
Sbjct: 537 -NDPKYERLVNAILD-----FLPKIEENLI-------CSKYTDLLRIALMA 574
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 48/196 (24%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMPYGSYGF------ 186
G + I+G + SGKST LR I L P G + VNG + G
Sbjct: 31 AGDVISIIGSSGSGKSTFLRCI-NFLEKPSE----GAIIVNGQNINLVRDKDGQLKVADK 85
Query: 187 --VERETTLIG----------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS---L 231
+ T + +TV E + A +Q+ G + + E A+ ++ +
Sbjct: 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLGL--SKHDARERALKYLAKVGI 142
Query: 232 SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL-LMMV-- 288
+ A Y L G+++RV IAR L M P VL DEP SAL +V
Sbjct: 143 DERAQGK-----YPVHLSGGQQQRVSIARALAMEPDVLLFDEP------TSALDPELVGE 191
Query: 289 ---TLKKLASTGCTLL 301
+++LA G T++
Sbjct: 192 VLRIMQQLAEEGKTMV 207
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 53/257 (20%), Positives = 99/257 (38%), Gaps = 63/257 (24%)
Query: 96 AVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA 155
K G ++ + D V ++ + + +KS N + GT ++G SGKST+ +
Sbjct: 8 TSHEKKFGVNIEFSD--VNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKL 65
Query: 156 IAGRLPHSARMY---GEVFVNGAK-SEMPYGSY----GFVERETTLIGSLTVREYLYYSA 207
+ R Y G++ + G ++ S G V ++T L T++ + Y
Sbjct: 66 L-------YRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE-TIKYNILYG- 116
Query: 208 LLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC---------------GE 252
+ + ++ + A K + +++ LP GE
Sbjct: 117 ----------KLDATDEEVIK------ATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGE 160
Query: 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL-----LFTINQS 307
R+R+ IAR L+ P ++ DE LDS + L ++ L + L TI+ +
Sbjct: 161 RQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSA 220
Query: 308 STEVFGLFDRICLLSNG 324
+ I LL+ G
Sbjct: 221 --------ESIILLNKG 229
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 67/267 (25%), Positives = 114/267 (42%), Gaps = 44/267 (16%)
Query: 112 TVTIKG-KRRYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMY 167
+ ++ +++ + + + N G ++GP+ SGKSTLL IAG + P S ++Y
Sbjct: 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-IYKPTSGKIY 61
Query: 168 -GEVFVNGAKSE-----MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF-FCQRKN 220
E V + + + ++ L +TV + + + L+L +
Sbjct: 62 FDEKDVTELPPKDRNVGLVFQNWA-------LYPHMTVYKNIAFP--LELRKAPREEIDK 112
Query: 221 VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
V + + + N+ Y L G+++RV IAR LV P VL +DEPL +LD
Sbjct: 113 KVREVAKMLHIDKLLNR------YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD- 165
Query: 281 VSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335
ALL + LK+L G T ++ T +Q E + DRI ++ G L G
Sbjct: 166 --ALLRLEVRAELKRLQKELGITTVYVTHDQ--AEALAMADRIAVIREGEILQVGTPDEV 221
Query: 336 LQHFSN---AGFPCPIMQSPSDHFLRA 359
GF + +P +F+ A
Sbjct: 222 YYKPKYKFVGGF----LGNPPMNFVEA 244
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 86/533 (16%), Positives = 161/533 (30%), Gaps = 126/533 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
G ++G + GKST ++ + R+Y G V ++G + G
Sbjct: 415 SGQTVALVGNSGCGKSTTVQLMQ-------RLYDPLDGMVSIDGQDIRTINVRYLREIIG 467
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA------MSLSDYANKLI 239
V +E L + T+ E + Y + + A M L + L+
Sbjct: 468 VVSQEPVLF-ATTIAENIRYG----RED--VTMDEIEKAVKEANAYDFIMKLPHQFDTLV 520
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
G L G+++R+ IAR LV P +L +DE LD+ S ++ L K A G T
Sbjct: 521 GERGAQ--LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRT 577
Query: 300 LLF------TINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPS 353
+ T+ + D I G I++ +
Sbjct: 578 TIVIAHRLSTVRNA--------DVIAGFDGGV----------------------IVEQGN 607
Query: 354 DHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMIL 413
L + +++ + + + + + + S+ T
Sbjct: 608 HDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKS 667
Query: 414 RLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSG 473
+ S +A WR L + S EW Y+ + + +I G +
Sbjct: 668 ICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAII----NGGLQPA 723
Query: 474 LGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLL 533
S VV N + + +L+FL+ ++
Sbjct: 724 FSVIFSKVV------------GVFTNGGPPETQRQNSNLF----------SLLFLILGII 761
Query: 534 SSIPFLFLISISSSLVFYFLVGLRDE-FSLLMYFVLNFF--------------------- 571
S I F LR F ++ +++F
Sbjct: 762 SFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQV 821
Query: 572 -------MCLLVNEGLMLVVASIWKDVY-WSILTLISVHVV-MMLSAGYFRIR 615
+ ++ L I +Y W LTL+ + +V ++ AG ++
Sbjct: 822 KGATGSRLAVIFQNIANLGTGIIISLIYGWQ-LTLLLLAIVPIIAIAGVVEMK 873
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 56/218 (25%), Positives = 89/218 (40%), Gaps = 58/218 (26%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
G ++G + GKST+++ + R Y G VF++G + ++ G
Sbjct: 1058 KGQTLALVGSSGCGKSTVVQLLE-------RFYDPMAGSVFLDGKEIKQLNVQWLRAQLG 1110
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA-----------MSLSDY 234
V +E L ++ E + Y + V + I SL D
Sbjct: 1111 IVSQEPILF-DCSIAENIAYGD---------NSRVVSYEEIVRAAKEANIHQFIDSLPDK 1160
Query: 235 ANKLIGGHCYMKG--LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
N +G KG L G+++R+ IAR LV +PH+L +DE LD+ S ++ L K
Sbjct: 1161 YNTRVG----DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK 1216
Query: 293 LASTGCTL------LFTINQSSTEVFGLFDRICLLSNG 324
A G T L TI Q++ D I ++ NG
Sbjct: 1217 -AREGRTCIVIAHRLSTI-QNA-------DLIVVIQNG 1245
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 7e-06
Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 64/220 (29%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
G + I+G + SGKSTL + I R Y G+V ++G + G
Sbjct: 34 QGEVIGIVGRSGSGKSTLTKLI-------QRFYIPENGQVLIDGHDLALADPNWLRRQVG 86
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V ++ L+ ++ + + + + + + A KL G H ++
Sbjct: 87 VVLQDNVLLNR-SIIDNISLA-----------NPGMSVEKVIY------AAKLAGAHDFI 128
Query: 246 KGLP------CGER---------RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290
L GE+ +R+ IAR LV P +L DE LD S ++M +
Sbjct: 129 SELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 188
Query: 291 KKLASTGCTLLF------TINQSSTEVFGLFDRICLLSNG 324
K+ G T++ T+ + DRI ++ G
Sbjct: 189 HKIC-KGRTVIIIAHRLSTVKNA--------DRIIVMEKG 219
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 8e-06
Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 42/209 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
PG ++GP+ +GKST+LR + R Y G + ++G S++ S G
Sbjct: 79 PGQTLALVGPSGAGKSTILRLLF-------RFYDISSGCIRIDGQDISQVTQASLRSHIG 131
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V ++T L T+ + + Y G + VE A A + D G+
Sbjct: 132 VVPQDTVLFND-TIADNIRY-------GRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQ 183
Query: 246 KG-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
G L GE++RV IAR ++ P ++ +DE LD+ + + +L K+ + T+
Sbjct: 184 VGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTI 243
Query: 301 -----LFTINQSSTEVFGLFDRICLLSNG 324
L T+ + D+I ++ +G
Sbjct: 244 VVAHRLSTVVNA--------DQILVIKDG 264
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 37/229 (16%)
Query: 112 TVTIKG-KRRYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMY 167
++ + K+ + K V + G ++GP+ GK+T L +AG + P S +Y
Sbjct: 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-IYKPTSGEIY 61
Query: 168 -GEVFVNGAKSE-----MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF-CQRKN 220
+V VN + M + +Y L +TV E + + L+ + +
Sbjct: 62 FDDVLVNDIPPKYREVGMVFQNYA-------LYPHMTVFENIAFP--LRARRISKDEVEK 112
Query: 221 VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
V + + + + ++ L G+++RV +AR LV +P VL DEPL +LD
Sbjct: 113 RVVEIARKLLIDNLLDR------KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD- 165
Query: 281 VSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNG 324
A L M +K L G T ++ T +Q E + RI + + G
Sbjct: 166 --ANLRMIMRAEIKHLQQELGITSVYVTHDQ--AEAMTMASRIAVFNQG 210
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 71/267 (26%), Positives = 115/267 (43%), Gaps = 44/267 (16%)
Query: 112 TVTIKG-KRRYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMY 167
V ++ +R+ + V N G V++GP+ GK+T LR IAG L P R+Y
Sbjct: 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPTEGRIY 69
Query: 168 -GEVFVNGAKSE-----MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF-CQRKN 220
G+ V + M + SY + +TV E + + L++ F +
Sbjct: 70 FGDRDVTYLPPKDRNISMVFQSYA-------VWPHMTVYENIAFP--LKIKKFPKDEIDK 120
Query: 221 VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
V A + + + N+ Y L G+R+RV +AR +V+ P VL +DEPL +LD
Sbjct: 121 RVRWAAELLQIEELLNR------YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD- 173
Query: 281 VSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335
A L M +KKL T ++ T +Q E + DRI +++ G L G
Sbjct: 174 --AKLRVAMRAEIKKLQQKLKVTTIYVTHDQ--VEAMTMGDRIAVMNRGQLLQIGSPTEV 229
Query: 336 LQHFSN---AGFPCPIMQSPSDHFLRA 359
++ A F + +P + L
Sbjct: 230 YLRPNSVFVATF----IGAPEMNILEV 252
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 63/309 (20%), Positives = 105/309 (33%), Gaps = 86/309 (27%)
Query: 51 WEDTDVEVRVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKD 110
WE+ E+ + ++ N T+ SLS N L +P L KD
Sbjct: 14 WEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVL-----------------KD 56
Query: 111 LTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
+ I+ G + + G +GK++LL I G L S G++
Sbjct: 57 INFKIE------------------RGQLLAVAGSTGAGKTSLLMMIMGELEPSE---GKI 95
Query: 171 FVNGAKSEMPYGSYGFVERETTLIGSLTVRE---------YLYYSALLQLPGFFCQRKNV 221
+G S S+ I T++E Y Y
Sbjct: 96 KHSGRISFCSQNSW---------IMPGTIKENIIGVSYDEYRY----------------- 129
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKG-----LPCGERRRVRIARELVMRPHVLFIDEPLY 276
I A L + +K + G L G+R R+ +AR + + +D P
Sbjct: 130 -RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 188
Query: 277 HLDS-VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG---ET 332
+LD + + KL + +L T ++ E D+I +L G++ F+G E
Sbjct: 189 YLDVLTEKEIFESCVCKLMANKTRILVT-SK--MEHLKKADKILILHEGSSYFYGTFSEL 245
Query: 333 LACLQHFSN 341
FS+
Sbjct: 246 QNLRPDFSS 254
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 49/271 (18%), Positives = 93/271 (34%), Gaps = 71/271 (26%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
G + + ++++ +I +V ++G SGKSTLL A RL +
Sbjct: 32 GGNAILENISFSISPG----QRVG--------------LLGRTGSGKSTLLSAFL-RLLN 72
Query: 163 SARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ--RKN 220
+ GE+ ++G I R+ + Q F RKN
Sbjct: 73 TE---GEIQIDG--------------VSWDSITLEQWRKAF--GVIPQKVFIFSGTFRKN 113
Query: 221 V----------VEDAIHAMSLSDYANKLIGG---HCYMKG--LPCGERRRVRIARELVMR 265
+ + + L + G G L G ++ + +AR ++ +
Sbjct: 114 LDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173
Query: 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
+L +DEP HLD V+ ++ TLK+ A CT++ + + D+ ++
Sbjct: 174 AKILLLDEPSAHLDPVTYQIIRRTLKQ-AFADCTVILCEARIEAML--ECDQFLVIEENK 230
Query: 326 TLFFGETLACLQHFSNAGFPCPIMQSPSDHF 356
+ + P+D F
Sbjct: 231 VRQYDS-------------ILELYHYPADRF 248
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 6e-05
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 30/153 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSYGFVERETTL 193
G + ++G +GK+T L AIAG + G++ NG + P ++ L
Sbjct: 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQK---GKIIFNGQDITNKP--AHVINRMGIAL 85
Query: 194 I-------GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-----SLSDYANKLIGG 241
+ LTV E L + + + K ++ + + L + +L G
Sbjct: 86 VPEGRRIFPELTVYEN------LMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGG- 138
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
+ G GE++ + I R L+ RP +L +DEP
Sbjct: 139 --TLSG---GEQQMLAIGRALMSRPKLLMMDEP 166
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 47/219 (21%), Positives = 82/219 (37%), Gaps = 61/219 (27%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
P ++ GP+ GKST+ + R Y GE+ ++G + ++ G
Sbjct: 27 PNSIIAFAGPSGGGKSTIFSLL-------ERFYQPTAGEITIDGQPIDNISLENWRSQIG 79
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
FV +++ ++ T+RE L Y + ++ + L ++
Sbjct: 80 FVSQDSAIMAG-TIRENLTYG----------LEGDYTDEDLWQ------VLDLAFARSFV 122
Query: 246 KGLP------CGER---------RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290
+ +P GER +R+ IAR + P +L +DE LDS S ++ L
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 291 KKLASTGCTL-----LFTINQSSTEVFGLFDRICLLSNG 324
L TL L TI + D+I + G
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDA--------DKIYFIEKG 213
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 43/212 (20%), Positives = 79/212 (37%), Gaps = 49/212 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G + + G +GK++LL I G L G++ +G S + S + + I
Sbjct: 33 RGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGRIS---FCS------QFSWI 80
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVV----------EDAIHAMSLSDYANKLIGGHCY 244
T++E N++ I A L + +K
Sbjct: 81 MPGTIKE------------------NIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNI 122
Query: 245 MKG-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLDS-VSALLMMVTLKKLASTGC 298
+ G L G+R R+ +AR + + +D P +LD + + KL +
Sbjct: 123 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 182
Query: 299 TLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
+L T ++ E D+I +L G++ F+G
Sbjct: 183 RILVT-SK--MEHLKKADKILILHEGSSYFYG 211
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159
+DL +I G+ ++K N G + +MGP +GKSTL + +AG
Sbjct: 7 RDLWASIDGE-----TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 71/277 (25%), Positives = 115/277 (41%), Gaps = 58/277 (20%)
Query: 112 TVTIKG-KRRYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMY 167
V + + + + V+ + G +++GP+ GK+T LR IAG L P ++Y
Sbjct: 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPSRGQIY 61
Query: 168 -GEVFVNGAKSE-----------MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF 215
G+ V + M + SY L +TV + + + L+L
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYA-------LYPHMTVYDNIAFP--LKLRKVP 112
Query: 216 -CQRKNVVEDAIHAMSLSDYANK----LIGGHCYMKGLPCGERRRVRIARELVMRPHVLF 270
+ V + + L++ N+ L GG +R+RV + R +V +P V
Sbjct: 113 RQEIDQRVREVAELLGLTELLNRKPRELSGG----------QRQRVALGRAIVRKPQVFL 162
Query: 271 IDEPLYHLDSVSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNGN 325
+DEPL +LD A L M LKKL G T ++ T +Q E + DRI +++ G
Sbjct: 163 MDEPLSNLD---AKLRVRMRAELKKLQRQLGVTTIYVTHDQ--VEAMTMGDRIAVMNRGV 217
Query: 326 TLFFGETLACLQHFSN---AGFPCPIMQSPSDHFLRA 359
G +N AGF + SP +FL A
Sbjct: 218 LQQVGSPDEVYDKPANTFVAGF----IGSPPMNFLDA 250
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 5e-04
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159
KDL V+++ K +++ + PG + IMGP SGKSTL +AGR
Sbjct: 24 KDLHVSVEDK-----AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 641 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-27 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-26 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-25 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-25 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-24 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 7e-24 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-23 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-22 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-22 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-22 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-21 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-21 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 9e-21 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-19 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-18 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 6e-17 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-16 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-05 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-05 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 0.003 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 107 bits (270), Expect = 4e-27
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 19/233 (8%)
Query: 113 VTIKG-KRRYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
V ++ +R+ + V N G V++GP+ GK+T LR IAG + G +
Sbjct: 7 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE---GRI 63
Query: 171 FVNGAKSEMPYGSY---GFVERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAI 226
+ V + + +TV E + + ++ P + V A
Sbjct: 64 YFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK--DEIDKRVRWAA 121
Query: 227 HAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286
+ + + N+ Y L G+R+RV +AR +V+ P VL +DEPL +LD+ + M
Sbjct: 122 ELLQIEELLNR------YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM 175
Query: 287 MVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
+KKL T ++ + E + DRI +++ G L G
Sbjct: 176 RAEIKKLQQKLKVTTIY-VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 105 bits (264), Expect = 2e-26
Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 21/243 (8%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
GA VV KDL I K +++K + G + ++GP +GK+T LR I+ +
Sbjct: 1 GAVVV-KDLRKRIGKK-----EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP 54
Query: 163 SARMYGEVFVNGAKSEMP----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQR 218
S+ G V V G ++ E ++ EYL + A +
Sbjct: 55 SS---GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY-ASSSSEI 110
Query: 219 KNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278
+ +VE A L + + G R++ IAR L++ P + +DEP L
Sbjct: 111 EEMVERATEIAGLGEKIKD------RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGL 164
Query: 279 DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
D ++A + LK+ + G T+L + + EV L DRI L+ NG + G +
Sbjct: 165 DVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKER 223
Query: 339 FSN 341
+
Sbjct: 224 YKA 226
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 102 bits (255), Expect = 2e-25
Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 25/219 (11%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+DL+V Y V++ G + GP GK+TLL+ I+ L
Sbjct: 6 RDLSV------GYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG--- 56
Query: 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA 228
E+ NG G F+ E + ++V +YL A L KN + DA+ +
Sbjct: 57 EIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK---VNKNEIMDALES 113
Query: 229 MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 288
+ + D K + L G RRV++A L++ + +D+P+ +D S ++
Sbjct: 114 VEVLDLKKK-------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK 166
Query: 289 TLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326
++ ++ G ++ S E D L +T
Sbjct: 167 SILEILKEKGIVIIS-----SREELSYCDVNENLHKYST 200
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 101 bits (252), Expect = 7e-25
Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 21/227 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
K++T T K +K+ N G IMGP+ SGKST+L I + G
Sbjct: 5 KNVTKTYKMGEE-IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE---G 60
Query: 169 EVFVNG---------AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK 219
EV+++ +++ GFV ++ LI LT E + + + G +
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAM-SGE 119
Query: 220 NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
+ A+ + +++ + + L G+++RV IAR L P ++ D+P LD
Sbjct: 120 ERRKRALECLKMAELEERF--ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 280 SVSALLMMVTLKKLA-STGCTLLF-TINQSSTEVFGLFDRICLLSNG 324
S + +M LKKL G T++ T + V +RI L +G
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDI---NVARFGERIIYLKDG 221
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 98.9 bits (246), Expect = 4e-24
Identities = 46/210 (21%), Positives = 75/210 (35%), Gaps = 29/210 (13%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGSY-GFVER 189
G + ++GP +GKSTLL +AG G + G A S + ++ +
Sbjct: 24 AGEILHLVGPNGAGKSTLLARMAGMTSGK----GSIQFAGQPLEAWSATKLALHRAYLSQ 79
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
+ T + V YL + R ++ D A++L D + L
Sbjct: 80 QQTPPFATPVWHYLTLHQHDK------TRTELLNDVAGALALDDKLGR------STNQLS 127
Query: 250 CGERRRVRIARELVM-------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 302
GE +RVR+A ++ +L +DEP+ LD + L L G ++
Sbjct: 128 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVM 187
Query: 303 TINQSSTEVFGLFDRICLLSNGNTLFFGET 332
+ R LL G L G
Sbjct: 188 -SSHDLNHTLRHAHRAWLLKGGKMLASGRR 216
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 99.7 bits (248), Expect = 4e-24
Identities = 44/214 (20%), Positives = 75/214 (35%), Gaps = 28/214 (13%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS------YGFVE 188
G +T+I+GP SGKSTL+ I G L G V+ +
Sbjct: 29 KGDVTLIIGPNGSGKSTLINVITGFLKADE---GRVYFENKDITNKEPAELYHYGIVRTF 85
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFC------------QRKNVVEDAIHAMSLSDYAN 236
+ + +TV E L + + + + LS +
Sbjct: 86 QTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD 145
Query: 237 KLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 296
+ G L G+ + V I R L+ P ++ +DEP+ + A + + +L +
Sbjct: 146 RKAGE------LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 297 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
G T L I V D + ++ NG + G
Sbjct: 200 GITFLI-IEHRLDIVLNYIDHLYVMFNGQIIAEG 232
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 99.1 bits (247), Expect = 7e-24
Identities = 54/242 (22%), Positives = 86/242 (35%), Gaps = 32/242 (13%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
DL G +V+K + A G + I+G + SGKST LR I S G
Sbjct: 6 IDLHKRYGGH-----EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE---G 57
Query: 169 EVFVNGAKSEMPYGSY------------------GFVERETTLIGSLTVREYLYYSALLQ 210
+ VNG + V + L +TV E + + +
Sbjct: 58 AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV 117
Query: 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLF 270
L + + + + + A Y L G+++RV IAR L M P VL
Sbjct: 118 LGLSKHDARERALKYLAKVGIDERAQ-----GKYPVHLSGGQQQRVSIARALAMEPDVLL 172
Query: 271 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
DEP LD ++ +++LA G T++ + + + L G G
Sbjct: 173 FDEPTSALDPELVGEVLRIMQQLAEEGKTMVV-VTHEMGFARHVSSHVIFLHQGKIEEEG 231
Query: 331 ET 332
+
Sbjct: 232 DP 233
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 96.5 bits (240), Expect = 4e-23
Identities = 48/228 (21%), Positives = 83/228 (36%), Gaps = 18/228 (7%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA---R 165
+ L V +K + G + ++G +GK+T L AIAG +
Sbjct: 10 QSLHVYYGAI-----HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 166 MYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDA 225
G+ N + V + LTV E L A + K +E
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE--GIKRDLEWI 122
Query: 226 IHAMS-LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
L + +L G L GE++ + I R L+ RP +L +DEP L +
Sbjct: 123 FSLFPRLKERLKQLGGT------LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVS 176
Query: 285 LMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
+ ++K+ G T+L + Q++ + +L G + G+
Sbjct: 177 EVFEVIQKINQEGTTILL-VEQNALGALKVAHYGYVLETGQIVLEGKA 223
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 95.0 bits (236), Expect = 1e-22
Identities = 52/207 (25%), Positives = 83/207 (40%), Gaps = 13/207 (6%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG---AKSEMPYGSYGFVERET 191
G V +GP+ GKSTLLR IAG ++ ++F+ + G V +
Sbjct: 25 EGEFVVFVGPSGCGKSTLLRMIAGLETITSG---DLFIGEKRMNDTPPAERGVGMVFQSY 81
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251
L L+V E + + L V + L+ ++ K L G
Sbjct: 82 ALYPHLSVAENMSF-GLKLAGAKKEVINQRVNQVAEVLQLAHLLDR------KPKALSGG 134
Query: 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 311
+R+RV I R LV P V +DEPL +LD+ + M + + +L + + E
Sbjct: 135 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA 194
Query: 312 FGLFDRICLLSNGNTLFFGETLACLQH 338
L D+I +L G G+ L +
Sbjct: 195 MTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 95.2 bits (237), Expect = 1e-22
Identities = 48/244 (19%), Positives = 92/244 (37%), Gaps = 25/244 (10%)
Query: 96 AVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA 155
A +I + ++ ++K N G +G + GKSTL+
Sbjct: 7 AQPIEIKQGRIDIDHVSFQYNDNEA---PILKDINLSIEKGETVAFVGMSGGGKSTLINL 63
Query: 156 IAGRLPHSARMYGEVFVNG----AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL 211
I ++ G++ ++G + + ++ ++ S TV+E +
Sbjct: 64 IPRFYDVTS---GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL------ 114
Query: 212 PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG-----LPCGERRRVRIARELVMRP 266
G V +A + D+ L G+ G L G+++R+ IAR + P
Sbjct: 115 -GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNP 173
Query: 267 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326
+L +DE LD S ++ L L+ TL+ S+ D+I ++ NG+
Sbjct: 174 PILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT---HADKIVVIENGHI 230
Query: 327 LFFG 330
+ G
Sbjct: 231 VETG 234
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 95.0 bits (236), Expect = 2e-22
Identities = 50/213 (23%), Positives = 84/213 (39%), Gaps = 20/213 (9%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG------AKSEMP--YGSYGF 186
G + ++G + +GKSTL+R + + G V V+G ++SE+ G
Sbjct: 30 AGQIYGVIGASGAGKSTLIRCVNLLERPTE---GSVLVDGQELTTLSESELTKARRQIGM 86
Query: 187 VERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
+ + L+ S TV + L P + K V + + + L D + Y
Sbjct: 87 IFQHFNLLSSRTVFGNVALPLELDNTPK--DEVKRRVTELLSLVGLGDKHDS------YP 138
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
L G+++RV IAR L P VL DE LD + ++ LK + + I
Sbjct: 139 SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLIT 198
Query: 306 QSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
V + D + ++SNG + H
Sbjct: 199 HEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 95.4 bits (237), Expect = 2e-22
Identities = 37/196 (18%), Positives = 73/196 (37%), Gaps = 17/196 (8%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G M I G SGK++LL I G L S G + +G F + + ++
Sbjct: 61 KGEMLAITGSTGSGKTSLLMLILGELEASE---GIIKHSG--------RVSFCSQFSWIM 109
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254
T++E + + + + ++ N ++G L G+R
Sbjct: 110 -PGTIKENIIFGVSYD-EYRYKSVVKACQLQQDITKFAEQDNTVLG--EGGVTLSGGQRA 165
Query: 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314
R+ +AR + + +D P +LD + + + T + ++
Sbjct: 166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH--LRK 223
Query: 315 FDRICLLSNGNTLFFG 330
D+I +L G++ F+G
Sbjct: 224 ADKILILHQGSSYFYG 239
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 92.2 bits (229), Expect = 1e-21
Identities = 49/245 (20%), Positives = 86/245 (35%), Gaps = 21/245 (8%)
Query: 93 EGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTL 152
EG V + G + ++++T T G+ +++ N G ++G + SGKST+
Sbjct: 2 EGKRVIDRATGD-LEFRNVTFTYPGREV---PALRNINLKIPAGKTVALVGRSGSGKSTI 57
Query: 153 LRAIAGRLPHSAR--MYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210
I + + V + L Y
Sbjct: 58 ASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEY 117
Query: 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVRIARELVMR 265
+ +E+A D+ NK+ G L G+R+R+ IAR L+
Sbjct: 118 -------SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 170
Query: 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
+L +DE LD+ S + L +L T L ++ ST D I ++ +G
Sbjct: 171 SPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVEDGI 227
Query: 326 TLFFG 330
+ G
Sbjct: 228 IVERG 232
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 91.5 bits (227), Expect = 2e-21
Identities = 48/214 (22%), Positives = 85/214 (39%), Gaps = 21/214 (9%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG---------AKSEMPYGSYG 185
G +++GP+ GK+T LR IAG S ++++
Sbjct: 28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRG---QIYIGDKLVADPEKGIFVPPKDRDIA 84
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V + L +TV + + + L+ + V + + L++ N+
Sbjct: 85 MVFQSYALYPHMTVYDNIAFPLKLRKVPR-QEIDQRVREVAELLGLTELLNRKPRE---- 139
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTI 304
L G+R+RV + R +V +P V +DEPL +LD+ + M LKKL G T ++ +
Sbjct: 140 --LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY-V 196
Query: 305 NQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
E + DRI +++ G G
Sbjct: 197 THDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 89.4 bits (221), Expect = 9e-21
Identities = 47/218 (21%), Positives = 85/218 (38%), Gaps = 16/218 (7%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177
R++ + + + + G VI+GP +GK+ L IAG + + ++G
Sbjct: 8 SRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG---RILLDGKDV 64
Query: 178 EMPYG---SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY 234
FV + +L + V++ L + + + V D + +
Sbjct: 65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEF----GMRMKKIKDPKRVLDTARDLKIEHL 120
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
++ L GE++RV +AR LV P +L +DEPL LD + L L
Sbjct: 121 LDR------NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH 174
Query: 295 STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
+ I TE + DRI ++ +G + G+
Sbjct: 175 KKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKP 212
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 86.5 bits (214), Expect = 1e-19
Identities = 47/214 (21%), Positives = 88/214 (41%), Gaps = 13/214 (6%)
Query: 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP 180
S+++++ + A P ++ GP+ GKST+ + +A GE+ ++G +
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA---GEITIDGQPIDNIS 70
Query: 181 YGSY----GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYAN 236
++ GFV +++ ++ Y Q ++ ++ D N
Sbjct: 71 LENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLN 130
Query: 237 KLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 296
+G + G+R+R+ IAR + P +L +DE LDS S ++ L L
Sbjct: 131 TEVG--ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK- 187
Query: 297 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
G T L ++ ST V D+I + G G
Sbjct: 188 GRTTLVIAHRLSTIV--DADKIYFIEKGQITGSG 219
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 85.8 bits (212), Expect = 2e-19
Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 17/225 (7%)
Query: 111 LTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
+ + ++ ++R + + + + V++GP +GKS L IAG + GEV
Sbjct: 1 MFLKVRAEKRLGNFRLNVD--FEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDR---GEV 55
Query: 171 FVNGAKSEMPYGS---YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIH 227
+NGA GFV ++ L L+V A +R V +
Sbjct: 56 RLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN---IAYGLRNVERVERDRRVREMAE 112
Query: 228 AMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 287
+ ++ ++ L GER+RV +AR LV++P +L +DEPL +D + ++M
Sbjct: 113 KLGIAHLLDR------KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLM 166
Query: 288 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
L+ + + + E L D + ++ NG + G+
Sbjct: 167 EELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKL 211
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 83.2 bits (205), Expect = 2e-18
Identities = 49/210 (23%), Positives = 88/210 (41%), Gaps = 14/210 (6%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSA---RMYGEVFVNGAKSEMP--YGSYGFVER 189
G I+GP+ +GK+T +R IAG S + + K +P G V +
Sbjct: 30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQ 89
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
L +LT E L + + + VE+ + + N + + L
Sbjct: 90 TWALYPNLTAFEN-IAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN------HFPRELS 142
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSS 308
+++RV +AR LV P +L +DEP +LD+ +K++ G TLL ++
Sbjct: 143 GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV-VSHDP 201
Query: 309 TEVFGLFDRICLLSNGNTLFFGETLACLQH 338
++F + DR+ +L G + G+ +
Sbjct: 202 ADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 78.4 bits (193), Expect = 6e-17
Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 24/206 (11%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-----AKSEMPYGSYGFVER 189
G + I+G + SGKSTL + I +V ++G A G V +
Sbjct: 28 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENG---QVLIDGHDLALADPNWLRRQVGVVLQ 84
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCY 244
+ L+ + ++ + + + V A D+ ++L G
Sbjct: 85 DNVLL-NRSIIDNISLANPGM-------SVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 136
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 304
GL G+R+R+ IAR LV P +L DE LD S ++M + K+ G T++
Sbjct: 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIA 195
Query: 305 NQSSTEVFGLFDRICLLSNGNTLFFG 330
++ ST DRI ++ G + G
Sbjct: 196 HRLST--VKNADRIIVMEKGKIVEQG 219
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.6 bits (191), Expect = 1e-16
Identities = 41/207 (19%), Positives = 76/207 (36%), Gaps = 23/207 (11%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSY----GFVER 189
PG +T ++GP SGKST+ + + ++ ++G + + V +
Sbjct: 39 PGEVTALVGPNGSGKSTVAALLQNLYQPTGG---QLLLDGKPLPQYEHRYLHRQVAAVGQ 95
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG-- 247
E + +++E + Y + + A + + L G+
Sbjct: 96 EPQVF-GRSLQENIAYGLTQK------PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEA 148
Query: 248 ---LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFT 303
L G+R+ V +AR L+ +P VL +D+ LD+ S L + L + ++L
Sbjct: 149 GSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLI 208
Query: 304 INQSSTEVFGLFDRICLLSNGNTLFFG 330
S D I L G G
Sbjct: 209 TQHLSL--VEQADHILFLEGGAIREGG 233
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 53.5 bits (127), Expect = 7e-09
Identities = 21/185 (11%), Positives = 40/185 (21%), Gaps = 33/185 (17%)
Query: 140 VIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTV 199
+I G GK+TL++ I RL A +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRA---IGFWTEE-----------------VRDPETKK 43
Query: 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259
R F + + + + ++ + +
Sbjct: 44 RTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILE----------RAYR 93
Query: 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319
R V+ IDE + + + ++ TI I
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDL-VRQIMHDPNVNVVATIPIRDVHPL--VKEIR 150
Query: 320 LLSNG 324
L
Sbjct: 151 RLPGA 155
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 36.9 bits (84), Expect = 0.003
Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 9/130 (6%)
Query: 140 VIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTV 199
++ G + +GKS ++R + LP +G + A + G +E + S+
Sbjct: 7 ILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGP 66
Query: 200 REYLYYSAL---LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH----CYMKGLP--C 250
A + R + + + + + +G ++
Sbjct: 67 EFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVA 126
Query: 251 GERRRVRIAR 260
R R R
Sbjct: 127 EGRETARGDR 136
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 641 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.83 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.65 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.49 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.13 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.95 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.88 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.08 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 98.05 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.02 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.63 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.48 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.36 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.33 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.29 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.12 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.11 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.1 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 97.03 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.98 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.95 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.95 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.94 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.93 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.75 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.74 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.68 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.62 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.57 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.57 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.5 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.48 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.48 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.48 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.46 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.46 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.46 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.45 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.43 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.43 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.4 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.37 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.29 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.29 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.25 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.19 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.18 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.17 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.16 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.14 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.12 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.09 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.08 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.08 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.08 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.06 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.03 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.02 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.01 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.95 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.9 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.9 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.88 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.86 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.86 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.86 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.82 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.8 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.8 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.78 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.75 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.71 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.67 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.66 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.6 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.56 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.56 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.52 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.51 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.5 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.49 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.48 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.48 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.47 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.43 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.41 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.4 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.38 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.38 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.36 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.34 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.33 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.32 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.28 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.27 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.2 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.15 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.14 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.13 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.13 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.08 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.05 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 95.02 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.01 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.0 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.95 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.95 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.87 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.87 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.85 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.81 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.77 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.77 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.68 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.66 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.62 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.62 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.61 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.58 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.52 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.52 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 94.47 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.37 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.32 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.28 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.15 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.14 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.07 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.04 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.99 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.98 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.95 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.94 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.93 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.9 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.88 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.88 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.84 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.82 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.82 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.81 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.64 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.6 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.6 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.59 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.56 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.56 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.53 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.49 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.49 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.43 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.4 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.39 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.39 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.31 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.27 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.23 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.21 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.19 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.18 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.16 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.08 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 93.07 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.06 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.04 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.01 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.91 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.88 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.77 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.77 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.75 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 92.7 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 92.67 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.63 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.62 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 92.61 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.61 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.47 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.45 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 92.3 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.29 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.24 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.13 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.11 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.04 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 92.04 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.01 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.94 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.93 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.92 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.89 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 91.89 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.87 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.86 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.77 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.76 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.61 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.56 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.42 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.07 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 90.89 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 90.87 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.57 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.54 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 90.53 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.37 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 90.22 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 90.19 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 90.06 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 88.78 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 88.76 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 88.71 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 88.48 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 88.21 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.03 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.96 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 87.47 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 87.35 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 87.3 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 87.26 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.1 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 86.52 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 86.25 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 85.93 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 85.8 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 84.98 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 84.98 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 84.64 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 84.34 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 84.2 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 83.61 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 83.39 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 83.27 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 83.1 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 83.09 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 82.27 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 81.59 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 80.96 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 80.83 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=361.02 Aligned_cols=217 Identities=24% Similarity=0.345 Sum_probs=193.1
Q ss_pred EEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECC------
Q ss_conf 59999479999123334651000202488089299998799972999999997399999982019999997279------
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~------ 178 (641)
.+.++||++.|. ...+|+|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+..
T Consensus 3 ~i~v~nl~k~yg-----~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~s---G~I~~~g~~i~~~~~~~ 74 (240)
T d1g2912 3 GVRLVDVWKVFG-----EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR---GQIYIGDKLVADPEKGI 74 (240)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSE---EEEEETTEEEEEGGGTE
T ss_pred CEEEEEEEEEEC-----CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC---CEEEECCEEECCCCHHH
T ss_conf 189986999989-----9999856066886998999999999809999999964878898---98999999803566444
Q ss_pred ---CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf ---99850899828876699999999999999802998500079999999999399058753305887778889899999
Q 006548 179 ---MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 179 ---~~~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqR 255 (641)
..++.+|||+|++.++|.+||+||+.++..++.. ...+.+++++++++.++|.+..++.+. .||||||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~-~~~e~~~~v~~~l~~~~l~~~~~~~p~------~LSGGqkQR 147 (240)
T d1g2912 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV-PRQEIDQRVREVAELLGLTELLNRKPR------ELSGGQRQR 147 (240)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHTCGGGTTCCGG------GSCHHHHHH
T ss_pred HCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCHHHHCCCHH------HCCHHHHHH
T ss_conf 2453225512002212223101166763306877299-989999999999987599667629933------499999999
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHH
Q ss_conf 99999997199688993999999999999999999999875-98799999379388982087899982994889809257
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 256 v~IA~aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 334 (641)
++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |.|+|+++|+ ..++..+|||+++|++|++++.|++++
T Consensus 148 v~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd-~~~~~~~~drv~vm~~G~iv~~G~~~e 226 (240)
T d1g2912 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD-QVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (240)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC-HHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 9999998269988982588765698999899999999986369889999599-999999699999998999999859999
Q ss_pred HHH
Q ss_conf 988
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
++.
T Consensus 227 l~~ 229 (240)
T d1g2912 227 VYD 229 (240)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 982
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=362.27 Aligned_cols=218 Identities=25% Similarity=0.347 Sum_probs=192.9
Q ss_pred CEEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCC---C
Q ss_conf 5599994799991233346510002024880892999987999729999999973999999820199999972799---9
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~---~ 180 (641)
..+.++||+++|. ...+|+|||+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|++... .
T Consensus 5 ~~I~v~nlsk~yg-----~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~s---G~I~i~g~~i~~~~~~ 76 (239)
T d1v43a3 5 VEVKLENLTKRFG-----NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE---GRIYFGDRDVTYLPPK 76 (239)
T ss_dssp CCEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTSCGG
T ss_pred CEEEEEEEEEEEC-----CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC---CEEEECCEECCCCCCC
T ss_conf 7499987999999-----9999813067887998999999999829999999975899987---8799916413547700
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 85089982887669999999999999980299850007999999999939905875330588777888989999999999
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqRv~IA~ 260 (641)
.+.+|||+|++.++|++||+||+.|.+..+.- ...+.+++++++++.++|.++.++.+ ..||||||||++|||
T Consensus 77 ~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSGGq~QRvaiAr 149 (239)
T d1v43a3 77 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKF-PKDEIDKRVRWAAELLQIEELLNRYP------AQLSGGQRQRVAVAR 149 (239)
T ss_dssp GGTEEEEEC------CCCHHHHHHTTCC--CC-CHHHHHHHHHHHHHHTTCGGGTTSCT------TTCCSSCHHHHHHHH
T ss_pred CCEEEEEEECHHHCCCCHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCHHHHCCCH------HHCCHHHHHHHHHHH
T ss_conf 01589980033534222099999999987399-99999999999998759855660995------469999988999976
Q ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHHHHH
Q ss_conf 997199688993999999999999999999999875-98799999379388982087899982994889809257988
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 337 (641)
+|+.+|++|+|||||+|||+.++.++++.|++++++ |.|+++++|+ ..++..+|||+++|++|++++.|+++++++
T Consensus 150 aL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd-~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD-QVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 64049982430688666898999899999999987319807999489-999998699999998999999859999986
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=363.20 Aligned_cols=217 Identities=27% Similarity=0.387 Sum_probs=192.5
Q ss_pred EEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCC---CCC
Q ss_conf 99994799991233346510002024880892999987999729999999973999999820199999972799---985
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (641)
++++||+++|. ...+|+|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|++... .++
T Consensus 1 Iev~nv~k~yg-----~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~s---G~I~i~g~~i~~~~~~~r 72 (232)
T d2awna2 1 VQLQNVTKAWG-----EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS---GDLFIGEKRMNDTPPAER 72 (232)
T ss_dssp EEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEESSSCCTTSCGGGT
T ss_pred CEEEEEEEEEC-----CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC---CEEEECCEECCCCCHHHC
T ss_conf 99999999989-----9999811177886998999998999829999999965878888---889999997788864443
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 08998288766999999999999998029985000799999999993990587533058877788898999999999999
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqRv~IA~aL 262 (641)
.+|||+|++.++|.+||+||+.++...+.. ...+.+++++++++.++|.+..++.+. .||||||||++|||+|
T Consensus 73 ~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~l~~~~~~~~~------~LSGGqkQRvaiAraL 145 (232)
T d2awna2 73 GVGMVFQSYALYPHLSVAENMSFGLKLAGA-KKEVINQRVNQVAEVLQLAHLLDRKPK------ALSGGQRQRVAIGRTL 145 (232)
T ss_dssp CEEEECSSCCC----------------------CHHHHHHHHHHHHC---------------------------CHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCHHHHHCCHH------HCCHHHHHHHHHHHHH
T ss_conf 222343342026433378897899987599-889999999999975788656648965------6999999999999997
Q ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHHHHHH
Q ss_conf 719968899399999999999999999999987-5987999993793889820878999829948898092579887
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (641)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 338 (641)
+.+|++|+|||||+|||+.++.++++.|+++.+ .|.|+|+++|+ ..++..+|||+++|++|+++..|++.+++..
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd-~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC-HHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 039988997588878898899899999999987429879999489-9999996999999979999998089999738
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=361.76 Aligned_cols=219 Identities=24% Similarity=0.319 Sum_probs=192.4
Q ss_pred EEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECC------
Q ss_conf 59999479999123334651000202488089299998799972999999997399999982019999997279------
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~------ 178 (641)
.++++|+++.|+. ....+|+|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|++..
T Consensus 3 ~i~v~nlsk~y~~---g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~---G~I~~~g~~i~~~~~~~ 76 (242)
T d1oxxk2 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST---GELYFDDRLVASNGKLI 76 (242)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSE---EEEEETTEEEEETTEES
T ss_pred EEEEEEEEEEECC---CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---CEEEECCEEEECCCHHH
T ss_conf 8999757999889---99899804078987998999998999809999999975868887---45999999951373111
Q ss_pred C--CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 9--98508998288766999999999999998029985000799999999993990587533058877788898999999
Q 006548 179 M--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 179 ~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqRv 256 (641)
. .++.+|||+|++.++|++||+||+.|+...+. ....+.+++++++++.++|.+..++.++ .||||||||+
T Consensus 77 ~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~-~~~~~~~~~v~~~l~~~gL~~~~~~~p~------~LSGGqkQRv 149 (242)
T d1oxxk2 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK-MSKEEIRKRVEEVAKILDIHHVLNHFPR------ELSGAQQQRV 149 (242)
T ss_dssp SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS-CCHHHHHHHHHHHHHHTTCGGGTTSCGG------GSCHHHHHHH
T ss_pred CCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCHHHHHHCCHH------HCCHHHHHHH
T ss_conf 53120451477304334666657777665567613-7999999999999866591766648954------5999998589
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHHH
Q ss_conf 9999997199688993999999999999999999999875-987999993793889820878999829948898092579
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 257 ~IA~aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 335 (641)
+|||||+.+|++||+||||+|||+.++.++++.|+++.++ |.|+|+++|. ..++.++|||+++|++|++++.|+++++
T Consensus 150 aiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd-~~~~~~~~dri~vm~~G~iv~~g~~~el 228 (242)
T d1oxxk2 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD-PADIFAIADRVGVLVKGKLVQVGKPEDL 228 (242)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 987577604661454478667998998899899999986359879999799-9999996999999989999998699999
Q ss_pred HH
Q ss_conf 88
Q 006548 336 LQ 337 (641)
Q Consensus 336 ~~ 337 (641)
++
T Consensus 229 ~~ 230 (242)
T d1oxxk2 229 YD 230 (242)
T ss_dssp HH
T ss_pred HH
T ss_conf 86
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=359.01 Aligned_cols=220 Identities=22% Similarity=0.276 Sum_probs=192.1
Q ss_pred EEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCC-----
Q ss_conf 999947999912333465100020248808929999879997299999999739999998201999999727999-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~~----- 180 (641)
+.++||+++|..++ ....+|+|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|++....
T Consensus 2 i~v~nlsk~y~~~~-~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~s---G~I~~~g~~i~~~~~~~~ 77 (240)
T d3dhwc1 2 IKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE---GSVLVDGQELTTLSESEL 77 (240)
T ss_dssp EEEEEEEEEEECSS-CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSE---EEEEETTEEECTTCHHHH
T ss_pred EEEEEEEEEECCCC-EEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCC---CCEEECCEEEEECCHHHH
T ss_conf 79982799969998-14898615057886997999989998988899998758863667---732886768520875551
Q ss_pred ---CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf ---85089982887669999999999999980299850007999999999939905875330588777888989999999
Q 006548 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqRv~ 257 (641)
++.+|||+|+..++|.+||+||+.++..++.- ...+.+++++++++.+||.+..++.+ +.|||||||||+
T Consensus 78 ~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~-~~~~~~~~v~~~L~~vgL~~~~~~~~------~~LSGG~~QRva 150 (240)
T d3dhwc1 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT-PKDEVKRRVTELLSLVGLGDKHDSYP------SNLSGGQKQRVA 150 (240)
T ss_dssp HHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTC-CTTHHHHHHHHHHHHHSTTTTTSSCB------SCCCHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCCHHHHCCH------HHCCHHHHHHHH
T ss_conf 15541664302252227996499999999998499-98999999999999769903554894------349999998999
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHHHH
Q ss_conf 999997199688993999999999999999999999875-9879999937938898208789998299488980925798
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|++||+||||+|||+.++..+++.|+++.++ |.|+|+++| +..++..+|||+++|++|++++.|++++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTH-dl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITH-EMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBS-CHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 8640105898687446556589888567999999998646978999838-999999869999999799999987999997
Q ss_pred H
Q ss_conf 8
Q 006548 337 Q 337 (641)
Q Consensus 337 ~ 337 (641)
+
T Consensus 230 ~ 230 (240)
T d3dhwc1 230 S 230 (240)
T ss_dssp C
T ss_pred H
T ss_conf 2
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=356.76 Aligned_cols=212 Identities=24% Similarity=0.332 Sum_probs=189.9
Q ss_pred EEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCC---CC
Q ss_conf 999947999912333465100020248808929999879997299999999739999998201999999727999---85
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---YG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~~---~~ 182 (641)
+.++||+++|. ..+|+|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|++.... ++
T Consensus 2 i~v~nlsk~y~------~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~s---G~I~~~G~~i~~~~~~~r 72 (229)
T d3d31a2 2 IEIESLSRKWK------NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS---GRILLDGKDVTDLSPEKH 72 (229)
T ss_dssp EEEEEEEEECS------SCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSE---EEEEETTEECTTSCHHHH
T ss_pred EEEEEEEEEEC------CEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---CEEEECCEECCCCCHHHH
T ss_conf 89998999949------978843378987998999998999829999999964768887---889995673465216574
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 08998288766999999999999998029985000799999999993990587533058877788898999999999999
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqRv~IA~aL 262 (641)
.+|||+|++.++|++||+||+.|...++.. .++++++++++.+++.+..++.++ .||||||||++|||+|
T Consensus 73 ~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~------~LSGG~~QRvaiAraL 142 (229)
T d3d31a2 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKI----KDPKRVLDTARDLKIEHLLDRNPL------TLSGGEQQRVALARAL 142 (229)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCC----CCHHHHHHHHHHTTCTTTTTSCGG------GSCHHHHHHHHHHHHT
T ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHCCC----CHHHHHHHHHHHHCCHHHHHCCHH------HCCHHHHCCHHHHHHH
T ss_conf 056151211117466577888887764055----389999999998256555758955------4799984014030434
Q ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHHHHH
Q ss_conf 719968899399999999999999999999987-598799999379388982087899982994889809257988
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 337 (641)
+.+|++|+|||||+|||+.++.++.+.|+++++ .|.|+|+++|. ..++..+|||+++|++|++++.|+++++++
T Consensus 143 ~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd-~~~~~~~~drv~vm~~G~iv~~g~~~el~~ 217 (229)
T d3d31a2 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD-QTEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (229)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred HCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC-HHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 436771443478767998999999999999986479689997499-999999699999997999999869999986
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=352.33 Aligned_cols=218 Identities=24% Similarity=0.264 Sum_probs=189.7
Q ss_pred EEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCC-----
Q ss_conf 599994799991233346510002024880892999987999729999999973999999820199999972799-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~----- 179 (641)
.++++||++.|. ...+|+|||+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|++...
T Consensus 2 ~Lev~nl~k~yg-----~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~---G~I~~~G~~i~~~~~~~ 73 (258)
T d1b0ua_ 2 KLHVIDLHKRYG-----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE---GAIIVNGQNINLVRDKD 73 (258)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETTEECCEEECTT
T ss_pred EEEEEEEEEEEC-----CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---CCEEECCEEECCCCCCC
T ss_conf 699997899989-----9998815066886997999998999829999999974766789---97799999933677520
Q ss_pred -------------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHH-HHHHHCCCCCC
Q ss_conf -------------9850899828876699999999999999802998500079999999999399058-75330588777
Q 006548 180 -------------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYM 245 (641)
Q Consensus 180 -------------~~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~igg~~~~ 245 (641)
.++.+|||+|++.++|.+||.||+.+...........+.++++.++++.++|.+. .++.+
T Consensus 74 ~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p------ 147 (258)
T d1b0ua_ 74 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP------ 147 (258)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG------
T ss_pred HHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC------
T ss_conf 00023517679997454489983323141101021365657876299989999999999998299524430682------
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEEECCE
Q ss_conf 88898999999999999719968899399999999999999999999987598799999379388982087899982994
Q 006548 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 246 ~gLSGGqrqRv~IA~aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~lL~~G~ 325 (641)
..|||||||||+|||+|+.+|++|++||||+|||+.++.++++.|++++++|.|++++ +|+..++..+|||+++|++|+
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~v-tHdl~~~~~~adri~vm~~G~ 226 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVV-THEMGFARHVSSHVIFLHQGK 226 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEE-CSCHHHHHHHCSEEEEEETTE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE-ECCHHHHHHHCCEEEEEECCE
T ss_conf 2056778889899999843998788524555688788889987655410368833899-489999998699999997999
Q ss_pred EEEEECHHHHHH
Q ss_conf 889809257988
Q 006548 326 TLFFGETLACLQ 337 (641)
Q Consensus 326 iv~~G~~~~~~~ 337 (641)
+++.|++++++.
T Consensus 227 iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 227 IEEEGDPEQVFG 238 (258)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHH
T ss_conf 999849999983
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=348.34 Aligned_cols=220 Identities=26% Similarity=0.320 Sum_probs=196.3
Q ss_pred EEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCC----
Q ss_conf 5999947999912333465100020248808929999879997299999999739999998201999999727999----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~~---- 180 (641)
.+.++||+++|. .+++|+|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+....
T Consensus 2 aI~v~nl~k~yg-----~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~---G~i~i~G~~i~~~~~~~ 73 (238)
T d1vpla_ 2 AVVVKDLRKRIG-----KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS---GIVTVFGKNVVEEPHEV 73 (238)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETTEETTTCHHHH
T ss_pred CEEEEEEEEEEC-----CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---CEEEECCEECCCCHHHH
T ss_conf 789995899999-----9999806256884897999999999999999999966988788---87999867244683988
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 85089982887669999999999999980299850007999999999939905875330588777888989999999999
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqRv~IA~ 260 (641)
++.++|+||+..+++++|+.||+.|.+.++.. ...+.++.++.+++.++|.+..++.++ .||||||||++||+
T Consensus 74 ~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 74 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS-SSSEIEEMVERATEIAGLGEKIKDRVS------TYSKGMVRKLLIAR 146 (238)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHCCGGGGGSBGG------GCCHHHHHHHHHHH
T ss_pred HHHEEEEEECCCCCCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHH------HCCHHHHHHHHHHH
T ss_conf 72186750015468786677888989986179-989999999999986797888850453------37998989999999
Q ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHHHHHHHH
Q ss_conf 99719968899399999999999999999999987598799999379388982087899982994889809257988756
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 340 (641)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 340 (641)
+|+.+|++|+|||||+|||+.++.++.+.+++++++|.||++++|+. .++..+|||+++|++|++++.|+++++.+.+.
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~ 225 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKERYK 225 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 98659998873379889798999999999999996599899995989-99999699999998999999928999986528
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=349.66 Aligned_cols=215 Identities=28% Similarity=0.344 Sum_probs=184.2
Q ss_pred EEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCC-----
Q ss_conf 999947999912333465100020248808929999879997299999999739999998201999999727999-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~~----- 180 (641)
+.++||+++|..++ ....+|+|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+....
T Consensus 2 I~i~nlsk~y~~~~-~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~s---G~I~~~g~~i~~~~~~~~ 77 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE---GEVYIDNIKTNDLDDDEL 77 (230)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEECTTCCHHHH
T ss_pred EEEEEEEEEECCCC-EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCC---CEEEECCEECCCCCHHHC
T ss_conf 89990799948998-20898713377884997999988999982165575068877776---626999998576885551
Q ss_pred ----CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHCCCCH-HHHHHHCCCCCCCCCCHHHH
Q ss_conf ----85089982887669999999999999980299850--007999999999939905-87533058877788898999
Q 006548 181 ----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF--CQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGER 253 (641)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~--~~~~~~v~~~l~~lgL~~-~~~~~igg~~~~~gLSGGqr 253 (641)
++.+|||+|++.++|.+||+||+.++...+..... .+..+++.+.++.++|.+ ..++.+ ..||||||
T Consensus 78 ~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p------~~LSGGqk 151 (230)
T d1l2ta_ 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP------NQLSGGQQ 151 (230)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG------GGSCHHHH
T ss_pred CHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH------HHCCHHHH
T ss_conf 231255577880412417686688877578887224789999999999998876242345534880------23899999
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECH
Q ss_conf 9999999997199688993999999999999999999999875-987999993793889820878999829948898092
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~ 332 (641)
|||+|||||+.+|++|++||||++||+.++.++++.|+++.++ |.|+|+++|++ .. ..+|||+++|++|+++..|++
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~-a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-NV-ARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH-HH-HTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCH-HH-HHHCCEEEEEECCEEEEECCC
T ss_conf 9999875652278889946876546989999999999999984399999987888-99-986998999989999995257
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=349.65 Aligned_cols=218 Identities=22% Similarity=0.293 Sum_probs=188.5
Q ss_pred CCEEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCC--
Q ss_conf 955999947999912333465100020248808929999879997299999999739999998201999999727999--
Q 006548 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-- 180 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~~-- 180 (641)
...++.+||++.|. ...+|+|+|+.+++||+++|+||||||||||+++|+|+++|++ |+|.++|++....
T Consensus 4 d~~Lev~~l~k~yg-----~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~---G~I~~~G~~i~~~~~ 75 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYG-----AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK---GKIIFNGQDITNKPA 75 (240)
T ss_dssp SEEEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEECTTCCH
T ss_pred CEEEEEEEEEEEEC-----CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---CEEEECCCCCCCCCH
T ss_conf 60799961899989-----9888830257888997999999999859999999967888880---389842443446608
Q ss_pred ----CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC-CCCHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf ----8508998288766999999999999998029985000799999999993-99058753305887778889899999
Q 006548 181 ----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-SLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~igg~~~~~gLSGGqrqR 255 (641)
+..++|++|+..++|.+||+||+.+.+...... ...++.++++++.+ ++.+..++.++ .||||||||
T Consensus 76 ~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~------~LSGG~~Qr 147 (240)
T d1ji0a_ 76 HVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK--EGIKRDLEWIFSLFPRLKERLKQLGG------TLSGGEQQM 147 (240)
T ss_dssp HHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCS--SHHHHHHHHHHHHCHHHHTTTTSBSS------SSCHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHCHHHHHHCCHH------HCCHHHHHH
T ss_conf 8888742355676554577636999999888732788--89999999999874176888758543------389999999
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHHH
Q ss_conf 99999997199688993999999999999999999999875987999993793889820878999829948898092579
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 335 (641)
++|||+|+.+|++|+|||||+|||+.++.++++.+++++++|.||++++|+ ..++.++|||+++|++|++++.|+++++
T Consensus 148 v~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~-l~~~~~~~drv~vl~~G~iv~~g~~~el 226 (240)
T d1ji0a_ 148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN-ALGALKVAHYGYVLETGQIVLEGKASEL 226 (240)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESC-HHHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 999999982998740039886799999999999999999689989999588-9999996999999989999998489998
Q ss_pred HH
Q ss_conf 88
Q 006548 336 LQ 337 (641)
Q Consensus 336 ~~ 337 (641)
.+
T Consensus 227 ~~ 228 (240)
T d1ji0a_ 227 LD 228 (240)
T ss_dssp HT
T ss_pred HC
T ss_conf 42
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=342.30 Aligned_cols=219 Identities=20% Similarity=0.238 Sum_probs=189.5
Q ss_pred EEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCC----
Q ss_conf 5999947999912333465100020248808929999879997299999999739999998201999999727999----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~~---- 180 (641)
.+..+||+++|. ..++|+|||+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|++....
T Consensus 4 iL~v~nlsk~yg-----~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~---G~I~~~g~~i~~~~~~~ 75 (254)
T d1g6ha_ 4 ILRTENIVKYFG-----EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE---GRVYFENKDITNKEPAE 75 (254)
T ss_dssp EEEEEEEEEEET-----TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEECTTCCHHH
T ss_pred EEEEEEEEEEEC-----CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---CEEEECCEECCCHHHHH
T ss_conf 699977899979-----9688712179988997999999999849999999977976887---37999999664056999
Q ss_pred --CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCC------------CCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
Q ss_conf --85089982887669999999999999980299------------8500079999999999399058753305887778
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLP------------GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~------------~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~ 246 (641)
...++|++|++.+++.+||.||+.++...+.. .......+++.++++.+++.+..++.++
T Consensus 76 ~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------ 149 (254)
T d1g6ha_ 76 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG------ 149 (254)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG------
T ss_pred HHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCHH------
T ss_conf 99833872577642478874232143013330345045665421353289999999999876196302059535------
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEEECCEE
Q ss_conf 88989999999999997199688993999999999999999999999875987999993793889820878999829948
Q 006548 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 247 gLSGGqrqRv~IA~aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~lL~~G~i 326 (641)
.||||||||++|||+|+.+|++|+|||||+|||+.++.++.+.|++++++|.||+++.|+. .++.++||||++|++|++
T Consensus 150 ~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl-~~~~~~~Drv~vm~~G~i 228 (254)
T d1g6ha_ 150 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQI 228 (254)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-STTGGGCSEEEEEETTEE
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCCEEEEEECCEE
T ss_conf 6991888899999999759272324397656999999999999999997899899994769-999986999999969989
Q ss_pred EEEECHHHHHHH
Q ss_conf 898092579887
Q 006548 327 LFFGETLACLQH 338 (641)
Q Consensus 327 v~~G~~~~~~~~ 338 (641)
++.|++++....
T Consensus 229 v~~g~~~e~~~~ 240 (254)
T d1g6ha_ 229 IAEGRGEEEIKN 240 (254)
T ss_dssp EEEEESHHHHHH
T ss_pred EEEECHHHHHHC
T ss_conf 999668998654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=337.54 Aligned_cols=196 Identities=26% Similarity=0.372 Sum_probs=173.1
Q ss_pred CEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCC---CCCEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 2024880892999987999729999999973999999820199999972799---9850899828876699999999999
Q 006548 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYGSYGFVERETTLIGSLTVREYLY 204 (641)
Q Consensus 128 ~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~E~l~ 204 (641)
|+|+.+. +|+++|+||||||||||+++|+|+++|++ |+|.++|.+... .++.+|||+|++.++|++||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~---G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDR---GEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCC---EEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHH
T ss_conf 9999749-97999997999809999999973999896---2899999998869989928522523144352201557666
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf 99980299850007999999999939905875330588777888989999999999997199688993999999999999
Q 006548 205 YSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284 (641)
Q Consensus 205 ~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqRv~IA~aL~~~P~iLllDEPTsgLD~~s~~ 284 (641)
|+. +. ....+.+++++++++.+||.+..++.+. .|||||||||+|||||+.+|++|+|||||+|||+.++.
T Consensus 93 ~~l--~~-~~~~~~~~~v~~~l~~~gl~~~~~~~~~------~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 93 YGL--RN-VERVERDRRVREMAEKLGIAHLLDRKPA------RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TTC--TT-SCHHHHHHHHHHHHHTTTCTTTTTCCGG------GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HHH--CC-CCHHHHHHHHHHHHHHCCCHHHHHCCHH------HCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 532--33-6778899999999986383756657944------48999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHHHHH
Q ss_conf 999999999875-98799999379388982087899982994889809257988
Q 006548 285 LMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 285 ~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 337 (641)
.+++.+++++++ |.|+|+++|+. .++..+||++++|++|++++.|+++++++
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~-~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCCEEEEEECCEEEEEECHHHHHC
T ss_conf 999999999874397699981899-99999699999998999999906999832
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=331.94 Aligned_cols=216 Identities=25% Similarity=0.355 Sum_probs=182.5
Q ss_pred EEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCC----
Q ss_conf 5999947999912333465100020248808929999879997299999999739999998201999999727999----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~~---- 180 (641)
.++++||++.|+. ..+.+|+|+|+.+++||.+||+||||||||||+++|+|+.+|++ |+|.++|.+....
T Consensus 1 eI~~~nvsf~Y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g~~i~~~~~~~ 74 (241)
T d2pmka1 1 DITFRNIRFRYKP---DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN---GQVLIDGHDLALADPNW 74 (241)
T ss_dssp EEEEEEEEEESST---TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEETTTSCHHH
T ss_pred CEEEEEEEEEECC---CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCC---CEEEECCEEECCCCHHH
T ss_conf 9299999999089---99603742489984999999999999989999999973578888---89999999944002465
Q ss_pred -CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCC-----CCCCCCHHHHH
Q ss_conf -850899828876699999999999999802998500079999999999399058753305887-----77888989999
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~-----~~~gLSGGqrq 254 (641)
++.++||+|++.+|+ .||+||+.+. .+. ...+.+.++++..++.+.....+.|.. .+..|||||||
T Consensus 75 lr~~i~~v~Q~~~lf~-~Ti~eNi~~~----~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~Q 146 (241)
T d2pmka1 75 LRRQVGVVLQDNVLLN-RSIIDNISLA----NPG---MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQ 146 (241)
T ss_dssp HHHHEEEECSSCCCTT-SBHHHHHCTT----STT---CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHH
T ss_pred HHCEEEEEECCCCCCC-CCCCCCCCCC----CCC---CCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHH
T ss_conf 5352889824465578-4000352235----755---4388899999997557888763201344327878866988989
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHH
Q ss_conf 99999999719968899399999999999999999999987598799999379388982087899982994889809257
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 334 (641)
|++|||+|+.+|++|+||||||+||+.++..+++.|+++.+ ++|+|+++|+.. . ...||+|++|++|++++.|++++
T Consensus 147 RvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~-~~~~D~i~vl~~G~Iv~~G~~~e 223 (241)
T d2pmka1 147 RIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS-T-VKNADRIIVMEKGKIVEQGKHKE 223 (241)
T ss_dssp HHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG-G-GTTSSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHH-H-HHHCCEEEEEECCEEEEECCHHH
T ss_conf 87544344416513556477655598999999999999858-998999978899-9-98499999998999999889999
Q ss_pred HHH
Q ss_conf 988
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
++.
T Consensus 224 ll~ 226 (241)
T d2pmka1 224 LLS 226 (241)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 982
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=327.23 Aligned_cols=218 Identities=22% Similarity=0.287 Sum_probs=184.0
Q ss_pred EEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCC----
Q ss_conf 5999947999912333465100020248808929999879997299999999739999998201999999727999----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~~---- 180 (641)
.++++||+++|+.+ ...+|+|+|+.+++||.+||+||||||||||+++|+|+.+|++ |+|.++|.+....
T Consensus 13 ~I~~~nvsf~Y~~~---~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g~~i~~~~~~~ 86 (253)
T d3b60a1 13 DLEFRNVTFTYPGR---EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE---GHILMDGHDLREYTLAS 86 (253)
T ss_dssp CEEEEEEEECSSSS---SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSE---EEEEETTEETTTBCHHH
T ss_pred EEEEEEEEEEECCC---CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC---CEEEECCCCCCHHHHHH
T ss_conf 79999889992999---9763533289985999999999999859999999862168884---68987880121110665
Q ss_pred -CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCC-----CCCCCCCHHHHH
Q ss_conf -85089982887669999999999999980299850007999999999939905875330588-----777888989999
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~-----~~~~gLSGGqrq 254 (641)
++.++|++|++.++. .|+++|+.+.. +.. ..+++++++++..++.++.+.++.|. ..+..|||||||
T Consensus 87 ~r~~i~~v~Q~~~l~~-~ti~~n~~~~~----~~~--~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQ 159 (253)
T d3b60a1 87 LRNQVALVSQNVHLFN-DTVANNIAYAR----TEE--YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQ 159 (253)
T ss_dssp HHHTEEEECSSCCCCS-SBHHHHHHTTT----TSC--CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHH
T ss_pred HHHEEEEEEECCCCCC-CCHHHHHHHCC----CCC--CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHH
T ss_conf 4206879950254478-62024332057----220--8999999999998179999735544101434888984999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHH
Q ss_conf 99999999719968899399999999999999999999987598799999379388982087899982994889809257
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 334 (641)
|++|||||+.+|++|+||||||+||+.++..+++.|+++.+ ++|+|+++|+. .. ...||+|++|++|++++.|++++
T Consensus 160 RvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l-~~-~~~~D~v~vl~~G~Iv~~G~~~e 236 (253)
T d3b60a1 160 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRL-ST-IEQADEIVVVEDGIIVERGTHSE 236 (253)
T ss_dssp HHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCG-GG-TTTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCH-HH-HHHCCEEEEEECCEEEEECCHHH
T ss_conf 99999999549988995164445898899999999987522-78899998879-99-98599999998999999889999
Q ss_pred HHHH
Q ss_conf 9887
Q 006548 335 CLQH 338 (641)
Q Consensus 335 ~~~~ 338 (641)
+++.
T Consensus 237 Ll~~ 240 (253)
T d3b60a1 237 LLAQ 240 (253)
T ss_dssp HHHH
T ss_pred HHHC
T ss_conf 9868
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=327.05 Aligned_cols=220 Identities=20% Similarity=0.267 Sum_probs=177.2
Q ss_pred EEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCC-----
Q ss_conf 599994799991233346510002024880892999987999729999999973999999820199999972799-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~----- 179 (641)
.++++||+++|+++ ..+.+|+|+|+.+++||++||+||||||||||+++|+|+++|.+ |+|.++|.+...
T Consensus 11 ~I~~~nvsf~Y~~~--~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~---G~I~i~g~~i~~~~~~~ 85 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR--PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG---GQLLLDGKPLPQYEHRY 85 (251)
T ss_dssp CEEEEEEEECCTTS--TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEEGGGBCHHH
T ss_pred EEEEEEEEEECCCC--CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---CEEEECCEECCHHHHHH
T ss_conf 69999989988999--99976744389984998999999999849999999861437876---89988998531101378
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCC-----CCCCCCCCHHHHH
Q ss_conf 98508998288766999999999999998029985000799999999993990587533058-----8777888989999
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg-----~~~~~gLSGGqrq 254 (641)
.++.++||+|++.+|+ .||+||+.+.. ... .....+.+.....++.+....++.| +..+..|||||||
T Consensus 86 ~r~~i~~v~Q~~~lf~-~tv~eni~~g~----~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQ 158 (251)
T d1jj7a_ 86 LHRQVAAVGQEPQVFG-RSLQENIAYGL----TQK--PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQ 158 (251)
T ss_dssp HHHHEEEECSSCCCCS-SBHHHHHHCSC----SSC--CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHH
T ss_pred HHHHHHHCCCCCCCCC-CCHHHHHHHHH----CCC--CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCE
T ss_conf 8877654045650027-63465545421----013--0278899999999899999856121113675167668954704
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHH
Q ss_conf 999999997199688993999999999999999999999875-9879999937938898208789998299488980925
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 333 (641)
|++|||+|+.+|+||+|||||++||+.++..+++.|+++.++ ++|+|+++|+. .. ...||+|++|++|++++.|+++
T Consensus 159 RvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l-~~-~~~aDrI~vl~~G~iv~~Gt~~ 236 (251)
T d1jj7a_ 159 AVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL-SL-VEQADHILFLEGGAIREGGTHQ 236 (251)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH-HH-HHTCSEEEEEETTEEEEEECHH
T ss_pred EEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH-HH-HHHCCEEEEEECCEEEEECCHH
T ss_conf 899860445687078716757656853689999999997650698999995979-99-9859999999899999988999
Q ss_pred HHHHH
Q ss_conf 79887
Q 006548 334 ACLQH 338 (641)
Q Consensus 334 ~~~~~ 338 (641)
++++.
T Consensus 237 eLl~~ 241 (251)
T d1jj7a_ 237 QLMEK 241 (251)
T ss_dssp HHHHH
T ss_pred HHHHC
T ss_conf 99859
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=334.61 Aligned_cols=215 Identities=21% Similarity=0.326 Sum_probs=177.0
Q ss_pred EEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCC-----C
Q ss_conf 99994799991233346510002024880892999987999729999999973999999820199999972799-----9
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~-----~ 180 (641)
++++||+++|++ .+.+|+|+|+.+++||++||+||||||||||+++|+|+.+|++ |+|.+||.+... .
T Consensus 2 le~knvsf~Y~~----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g~~i~~~~~~~~ 74 (242)
T d1mv5a_ 2 LSARHVDFAYDD----SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA---GEITIDGQPIDNISLENW 74 (242)
T ss_dssp EEEEEEEECSSS----SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSB---SCEEETTEESTTTSCSCC
T ss_pred EEEEEEEEECCC----CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCC---CEEEECCEEECCCCHHHH
T ss_conf 799988998799----9841422589985999999999999979999999999609898---779889988442467888
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCC-----CCCCCCCHHHHHH
Q ss_conf 85089982887669999999999999980299850007999999999939905875330588-----7778889899999
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRR 255 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~-----~~~~gLSGGqrqR 255 (641)
++.++||+|++.+|+. |++||+.+.. ... ..++.+++.++..++.+.....+.+. .....||||||||
T Consensus 75 r~~i~~v~Q~~~lf~~-ti~eNi~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQR 147 (242)
T d1mv5a_ 75 RSQIGFVSQDSAIMAG-TIRENLTYGL----EGD--YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQR 147 (242)
T ss_dssp TTTCCEECCSSCCCCE-EHHHHTTSCT----TSC--SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHH
T ss_pred HHHEEEECCCCCCCCC-CHHHHEECCC----CCC--CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 7436797566545785-3454301244----555--42356778999997555420374210152368789879999999
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHHH
Q ss_conf 99999997199688993999999999999999999999875987999993793889820878999829948898092579
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 335 (641)
++|||||+.+|+||+||||||+||+.++..+++.|+++++ ++|+|+++|+. ..+ ..||+|++|++|++++.|+++++
T Consensus 148 v~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l-~~~-~~~D~i~vl~~G~iv~~G~~~eL 224 (242)
T d1mv5a_ 148 LAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHRL-STI-VDADKIYFIEKGQITGSGKHNEL 224 (242)
T ss_dssp HHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT-TSEEEEECCSH-HHH-HHCSEEEEEETTEECCCSCHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCH-HHH-HHCCEEEEEECCEEEEECCHHHH
T ss_conf 9999998529989996588655698899999887888717-99899997879-999-84999999989999999999999
Q ss_pred HH
Q ss_conf 88
Q 006548 336 LQ 337 (641)
Q Consensus 336 ~~ 337 (641)
++
T Consensus 225 l~ 226 (242)
T d1mv5a_ 225 VA 226 (242)
T ss_dssp HH
T ss_pred HH
T ss_conf 86
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=327.54 Aligned_cols=216 Identities=22% Similarity=0.300 Sum_probs=184.2
Q ss_pred EEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCC----
Q ss_conf 5999947999912333465100020248808929999879997299999999739999998201999999727999----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~~---- 180 (641)
.+.++|++++|+.. .+.+|+|+|+.+++||.+||+|+||||||||+++|+|+.+|++ |+|.++|.+....
T Consensus 16 ~I~~~nvsf~Y~~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g~~i~~~~~~~ 89 (255)
T d2hyda1 16 RIDIDHVSFQYNDN---EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS---GQILIDGHNIKDFLTGS 89 (255)
T ss_dssp CEEEEEEEECSCSS---SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSE---EEEEETTEEGGGSCHHH
T ss_pred EEEEEEEEEEECCC---CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCC---CCCCCCCEECCCCCHHH
T ss_conf 79999889995999---9760644389983998999988999809999999971278630---00153998753078888
Q ss_pred -CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCC-----CCCCCCHHHHH
Q ss_conf -850899828876699999999999999802998500079999999999399058753305887-----77888989999
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~-----~~~gLSGGqrq 254 (641)
++.++||+|++.+|+ .||+||+.++ .+. ..++++.++++..++.+....++.|.+ ....|||||||
T Consensus 90 lr~~i~~v~Q~~~lf~-~Ti~eNi~~g----~~~---~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~Q 161 (255)
T d2hyda1 90 LRNQIGLVQQDNILFS-DTVKENILLG----RPT---ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 161 (255)
T ss_dssp HHHTEEEECSSCCCCS-SBHHHHHGGG----CSS---CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred HHHEEEEEECCCCCCC-CCHHHHHHCC----CCC---CCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHH
T ss_conf 6341456510156899-8799998515----867---9999999999996979999736242010333888984999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHH
Q ss_conf 99999999719968899399999999999999999999987598799999379388982087899982994889809257
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 334 (641)
|++|||+|+.+|++|+||||||+||+.++..+++.|+++.+ ++|+|+++|++. . ...||+|++|++|+++..|++++
T Consensus 162 Ri~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~-~-~~~~D~ii~l~~G~iv~~G~~~e 238 (255)
T d2hyda1 162 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS-T-ITHADKIVVIENGHIVETGTHRE 238 (255)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-G-TTTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHH-H-HHHCCEEEEEECCEEEEECCHHH
T ss_conf 99999998559989998376544797799999999998753-888999968999-9-98599999998999999889999
Q ss_pred HHH
Q ss_conf 988
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+++
T Consensus 239 Ll~ 241 (255)
T d2hyda1 239 LIA 241 (255)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 986
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=303.97 Aligned_cols=194 Identities=22% Similarity=0.276 Sum_probs=157.8
Q ss_pred CCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 65100020248808929999879997299999999739999998201999999727999850899828876699999999
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (641)
Q Consensus 122 ~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (641)
++++|+|+|+.+++||++||+||||||||||+++|+|+++|++ |+|.++|+ ++|++|++.+++ .||+|
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~---G~I~~~g~--------i~~v~Q~~~l~~-~tv~e 115 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE---GIIKHSGR--------VSFCSQFSWIMP-GTIKE 115 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSE---EEEECCSC--------EEEECSSCCCCS-EEHHH
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC---CEEEECCE--------EEEEECCCCCCC-CEEEC
T ss_conf 9767737599985999999998999829999999957974788---28999999--------999816430267-60321
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCC-----CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999980299850007999999999939905875330588-----7778889899999999999971996889939999
Q 006548 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (641)
Q Consensus 202 ~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~-----~~~~gLSGGqrqRv~IA~aL~~~P~iLllDEPTs 276 (641)
|+.+.. . ......+++++..++.........+. .....||||||||++|||+|+.+|+||+|||||+
T Consensus 116 ni~~~~------~--~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts 187 (281)
T d1r0wa_ 116 NIIFGV------S--YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFG 187 (281)
T ss_dssp HHTTTS------C--CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred CCCCCC------C--CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCC
T ss_conf 420333------4--56057999999977699998461233235555423779999999999999986963513338554
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHHHHH
Q ss_conf 9999999999999999987598799999379388982087899982994889809257988
Q 006548 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 277 gLD~~s~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 337 (641)
+||+.++..+++.+......++|+|+++|+. +....||+|++|++|++++.|+++++..
T Consensus 188 ~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 188 YLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp SSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECHH--HHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 4898999999999998862899999992528--9998599999998999999878999960
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-45 Score=300.48 Aligned_cols=207 Identities=23% Similarity=0.321 Sum_probs=176.0
Q ss_pred EEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCC---
Q ss_conf 59999479999123334651000202488089299998799972999999997399999982019999997279998---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY--- 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~~~--- 181 (641)
.+.++|++. ...|+++|+.+++||+++|+||||||||||+++|+|+.+ +. |+|.++|++.....
T Consensus 3 il~~~dv~~---------~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~-~~---G~I~~~g~~i~~~~~~~ 69 (231)
T d1l7vc_ 3 VMQLQDVAE---------STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GK---GSIQFAGQPLEAWSATK 69 (231)
T ss_dssp EEEEEEECC---------TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC-CS---SEEEESSSBGGGSCHHH
T ss_pred EEEEECCCC---------CCEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC-CC---EEEEECCEECCCCCHHH
T ss_conf 999987415---------715558888994898999998999809999999948879-95---59999999998699899
Q ss_pred --CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf --508998288766999999999999998029985000799999999993990587533058877788898999999999
Q 006548 182 --GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 182 --~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqRv~IA 259 (641)
...+|++|+.......++.+++.+.. .. ..+.+.++++++.+++.+..++.+. .||||||||++||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~--~~~~~~~~~~~~~~~l~~~~~~~~~------~LSgG~~Qrv~iA 137 (231)
T d1l7vc_ 70 LALHRAYLSQQQTPPFATPVWHYLTLHQ----HD--KTRTELLNDVAGALALDDKLGRSTN------QLSGGEWQRVRLA 137 (231)
T ss_dssp HHHHEEEECSCCCCCSSCBHHHHHHHHC----SC--TTCHHHHHHHHHHTTCTTTTTSBGG------GCCHHHHHHHHHH
T ss_pred HHHHCEEEECCCCCCCCCCHHHHHHHCC----CH--HHHHHHHHHHHHHCCCHHHHCCCHH------HCCHHHHHHHHHH
T ss_conf 9864024512135774420988764100----14--6689999999986598767676844------5699889999999
Q ss_pred HHHHH-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECH
Q ss_conf 99971-------99688993999999999999999999999875987999993793889820878999829948898092
Q 006548 260 RELVM-------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 260 ~aL~~-------~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~ 332 (641)
++|+. +|++|+|||||+|||+.++..+.+.+++++++|.||++++|+ ..++.++|||+++|++|++++.|++
T Consensus 138 ~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHd-l~~~~~~~dri~vl~~G~iv~~G~~ 216 (231)
T d1l7vc_ 138 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHD-LNHTLRHAHRAWLLKGGKMLASGRR 216 (231)
T ss_dssp HHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCC-HHHHHHHCSBCCBEETTEECCCSBH
T ss_pred HHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHCCEEEEEECCEEEEECCH
T ss_conf 999851713389988999718777789899999999999998679999999677-9999997999999979989998899
Q ss_pred HHHHH
Q ss_conf 57988
Q 006548 333 LACLQ 337 (641)
Q Consensus 333 ~~~~~ 337 (641)
++++.
T Consensus 217 ~ev~~ 221 (231)
T d1l7vc_ 217 EEVLT 221 (231)
T ss_dssp HHHSC
T ss_pred HHHHC
T ss_conf 99818
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.9e-44 Score=292.12 Aligned_cols=196 Identities=23% Similarity=0.321 Sum_probs=167.6
Q ss_pred EEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCEE
Q ss_conf 59999479999123334651000202488089299998799972999999997399999982019999997279998508
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (641)
.++++||++.|. +++|+|+|+.+++||+++|+||||||||||+++|+|+++|.+ |+|.+||.+....+..+
T Consensus 2 ~lev~~ls~~y~------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~---G~I~~~g~~i~~~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK---GEIIYNGVPITKVKGKI 72 (200)
T ss_dssp EEEEEEEEEESS------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETTEEGGGGGGGE
T ss_pred EEEEEEEEEEEC------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC---CEEEECCEEHHHHCCCE
T ss_conf 599998999939------928842088985998999999999719999999966205677---88999989626736708
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99828876699999999999999802998500079999999999399058753305887778889899999999999971
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqRv~IA~aL~~ 264 (641)
+|++|+..++..+|++|++.+.+.+.... ..++.+.+.++.+++.+.. +.++ .||||||||++||++|+.
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~~------~LSgG~~qrv~ia~al~~ 142 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVK---VNKNEIMDALESVEVLDLK-KKLG------ELSQGTIRRVQLASTLLV 142 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCC---CCHHHHHHHHHHTTCCCTT-SBGG------GSCHHHHHHHHHHHHTTS
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCC---CCHHHHHHHHHHCCCCCCC-CCCC------CCCCCHHHHHHHHHHHHC
T ss_conf 99950135788828999999999754886---3799999999874885630-1268------689718888999998864
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEEEC
Q ss_conf 99688993999999999999999999999875987999993793889820878999829
Q 006548 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 265 ~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~lL~~ 323 (641)
+|++++|||||+|||+.++..+++.|+++.+++.++++++||.. .+||.+.+|++
T Consensus 143 ~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 143 NAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECHH----HHCCHHHHEEE
T ss_conf 99899986862016999999999999999867999999991625----44161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.49 E-value=1.3e-16 Score=119.36 Aligned_cols=155 Identities=15% Similarity=0.108 Sum_probs=97.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCEEEEEC----CCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99987999729999999973999999820199999972799985089982----88766999999999999998029985
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVE----RETTLIGSLTVREYLYYSALLQLPGF 214 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~----Q~~~l~~~lTV~E~l~~~a~l~~~~~ 214 (641)
++|.||||||||||+++|+|.+++.. |.+...+.+......+.++.. .........+..+ ...
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 69 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRA---IGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTS----------KKL 69 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGE---EEEEEEEEC------CCEEEEEETTCCEEEEEETTCCC----------SSE
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCC---CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
T ss_conf 99998999389999999981488886---46998771328888765311233667778875411345----------544
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 00079999999999399058753305887778889899999999999971996889939999999999999999999998
Q 006548 215 FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294 (641)
Q Consensus 215 ~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqRv~IA~aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~ 294 (641)
. .+ .+.. . ....+++|+++|.++++++..+|+++++|||.... .....+...+.++.
T Consensus 70 ~-~~----------~~~~--~--------~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l 126 (178)
T d1ye8a1 70 V-GS----------YGVN--V--------QYFEELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIM 126 (178)
T ss_dssp E-TT----------EEEC--H--------HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHH
T ss_pred H-HH----------HHCC--C--------CHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC--HHHHHHHHHHHHHH
T ss_conf 3-02----------3037--6--------25665320137899999974099742302777310--04579999999875
Q ss_pred H-CCCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEEC
Q ss_conf 7-598799999379388982087899982994889809
Q 006548 295 S-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 295 ~-~g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~ 331 (641)
+ .+.++++++|+. .....+|++..+.+|+++.-++
T Consensus 127 ~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 127 HDPNVNVVATIPIR--DVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp TCTTSEEEEECCSS--CCSHHHHHHHTCTTCEEEECCT
T ss_pred CCCCCEEEEEECCH--HHHHHHCEEEEEECCEEEEECC
T ss_conf 05797899997447--7898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.13 E-value=1e-09 Score=76.10 Aligned_cols=77 Identities=21% Similarity=0.169 Sum_probs=62.5
Q ss_pred CCCCCHHHHHHHHHHHHHH----HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEE
Q ss_conf 7888989999999999997----199688993999999999999999999999875987999993793889820878999
Q 006548 245 MKGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL 320 (641)
Q Consensus 245 ~~gLSGGqrqRv~IA~aL~----~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~l 320 (641)
...+|+|||+...++..+. ..+.+++.|||-++|++.....+.+.|+..++ +.-+++|+|.| .+.+.+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp--~~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK--IVMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT--TGGGGCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCH--HHHHHCCCEEE
T ss_conf 1102577766777776655654226744554320335797899999999998554-88799998988--99973242899
Q ss_pred --EECC
Q ss_conf --8299
Q 006548 321 --LSNG 324 (641)
Q Consensus 321 --L~~G 324 (641)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEECC
T ss_conf 999699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.95 E-value=1.8e-09 Score=74.54 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEE
Q ss_conf 88898999999999999----71996889939999999999999999999998759879999937938898208789998
Q 006548 246 KGLPCGERRRVRIAREL----VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (641)
Q Consensus 246 ~gLSGGqrqRv~IA~aL----~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~lL 321 (641)
..+|||||.++++|.-+ ..+++++++|||+++||+.....+.+.|++++..+.-+|+++|+| .+.+.+|+++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878--999736617999
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.08 E-value=6.4e-05 Score=45.90 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEEECCHHHHHHC
Q ss_conf 999999999971996889939999999999999999-99999875987999993793889820
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGL 314 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLllDEPTsgLD~~s~~~i~~-~L~~l~~~g~tvi~tih~~~~~i~~~ 314 (641)
-+|+.-....+.+..++++||..+|-|+.....+.. .+..+.+.+..+++++|+. ++..+
T Consensus 102 l~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 102 MEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH--HHHHH
T ss_conf 78898775028977278554545686233200258888888862376137865202--33322
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=98.05 E-value=0.00013 Score=43.89 Aligned_cols=157 Identities=15% Similarity=0.055 Sum_probs=71.8
Q ss_pred EEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCEEEEECCCCCCCCCCCHHHHH-
Q ss_conf 0002024880892999987999729999999973999999820199999972799985089982887669999999999-
Q 006548 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL- 203 (641)
Q Consensus 125 iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l- 203 (641)
-|+++.+=+.+|+++.|.|++|+|||||+.-++-...... | ..+.|+.- ..+..+..
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~---g-------------~~v~~~s~------E~~~~~~~~ 81 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM---G-------------KKVGLAML------EESVEETAE 81 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTS---C-------------CCEEEEES------SSCHHHHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC---C-------------CCEEEEEE------CCCHHHHHH
T ss_conf 6888746978980899994799979999999997265533---6-------------63457640------111135776
Q ss_pred HHHHH-HCCCCCCCH--HHH-----HHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 99998-029985000--799-----9999999939905875330588777888989999999999997199688993999
Q 006548 204 YYSAL-LQLPGFFCQ--RKN-----VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275 (641)
Q Consensus 204 ~~~a~-l~~~~~~~~--~~~-----~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqRv~IA~aL~~~P~iLllDEPT 275 (641)
++.+. .+.+..... +.. +.+++.+.+.-.+.... ..........+.....-...--.+|+++++|--+
T Consensus 82 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~l~ 157 (277)
T d1cr2a_ 82 DLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHL----YDSFAEAETDRLLAKLAYMRSGLGCDVIILDHIS 157 (277)
T ss_dssp HHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEE----ECCC-CCCHHHHHHHHHHHHHTTCCSEEEEEEEE
T ss_pred HHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEE----ECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 999986458710101222221456778889887403521466----2143310689999986543213676259970542
Q ss_pred -----CCC--CHHHHHHHHHHHHHHHHC-CCEEEEEEECCH
Q ss_conf -----999--999999999999999875-987999993793
Q 006548 276 -----YHL--DSVSALLMMVTLKKLAST-GCTLLFTINQSS 308 (641)
Q Consensus 276 -----sgL--D~~s~~~i~~~L~~l~~~-g~tvi~tih~~~ 308 (641)
.+- +......+++.|++++++ +.+|++ ++|+.
T Consensus 158 ~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~-~~q~~ 197 (277)
T d1cr2a_ 158 IVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV-ICHLK 197 (277)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHCCEEEE-EEECC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE-ECCCC
T ss_conf 12034654430677899999999976501655203-10356
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.02 E-value=3e-05 Score=47.97 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHC-CCEEEEEEECC
Q ss_conf 9999999999719968899399999999999999999-9999875-98799999379
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLAST-GCTLLFTINQS 307 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLllDEPTsgLD~~s~~~i~~~-L~~l~~~-g~tvi~tih~~ 307 (641)
-+|+.-......+..++++||+.+|-++.....+... +..+..+ +..+++|+|..
T Consensus 108 ~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 108 MTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp HHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 999999997454660885322235877456667898764543204544289852468
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=0.00051 Score=40.25 Aligned_cols=147 Identities=16% Similarity=0.242 Sum_probs=70.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 89299998799972999999997399999982019999997279998508998288766999999999999998029985
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~ 214 (641)
||+++.|.|++|+|||||+--|+.....+ +. .+ +... .....+.|+.-++.. -.+.+-+ .+ +....
T Consensus 28 pg~~~~i~G~~G~GKS~l~l~la~~ia~g----~~-~~-~~~~-~~~~~vl~~~~E~~~---~~~~~Rl--~~-~~~~~- 93 (274)
T d1nlfa_ 28 AGTVGALVSPGGAGKSMLALQLAAQIAGG----PD-LL-EVGE-LPTGPVIYLPAEDPP---TAIHHRL--HA-LGAHL- 93 (274)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTC----CC-TT-CCCC-CCCCCEEEEESSSCH---HHHHHHH--HH-HHTTS-
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCC----CC-CC-CCCC-CCCCCEEEEECCCHH---HHHHHHH--HH-HHHCC-
T ss_conf 89589999289998999999999999769----97-21-1123-578736898512349---9999999--99-86236-
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC-----CCCHHHHHHHHHH
Q ss_conf 00079999999999399058753305887778889899999999999971996889939999-----9999999999999
Q 006548 215 FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY-----HLDSVSALLMMVT 289 (641)
Q Consensus 215 ~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqRv~IA~aL~~~P~iLllDEPTs-----gLD~~s~~~i~~~ 289 (641)
.........+.+.+.+..+.. .....- ..+.-......+|+++++|.-+. --|......++..
T Consensus 94 ---~~~~~~~~~~~~~~~~~~~~~------~~~~~~---~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~ 161 (274)
T d1nlfa_ 94 ---SAEERQAVADGLLIQPLIGSL------PNIMAP---EWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGR 161 (274)
T ss_dssp ---CHHHHHHHHHHEEECCCTTSC------CCTTSH---HHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHH
T ss_pred ---CHHHHHCCCCCCEECCCCCCC------CHHHHH---HHHHHHHHHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHH
T ss_conf ---866653123332321456742------035789---99999887526765896281354226652322568999988
Q ss_pred HHHHHH-CCCEEEEEEECCH
Q ss_conf 999987-5987999993793
Q 006548 290 LKKLAS-TGCTLLFTINQSS 308 (641)
Q Consensus 290 L~~l~~-~g~tvi~tih~~~ 308 (641)
|+.+++ .+.+++++ ||..
T Consensus 162 l~~la~~~~~~vi~v-~H~~ 180 (274)
T d1nlfa_ 162 MEAIAADTGCSIVFL-HHAS 180 (274)
T ss_dssp HHHHHHHHCCEEEEE-EEC-
T ss_pred HHHHHHCCCCCEEHH-HHCC
T ss_conf 777764479754013-1005
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.48 E-value=4.5e-05 Score=46.85 Aligned_cols=35 Identities=34% Similarity=0.414 Sum_probs=28.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 89299998799972999999997399999982019999
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i 172 (641)
+|+.++++|+||.|||||+|.|.+..... +|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHH---CCCCCC
T ss_conf 69808997889877888877305355501---068420
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.36 E-value=0.0025 Score=35.90 Aligned_cols=152 Identities=15% Similarity=0.134 Sum_probs=77.1
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 48808929999879997299999999739999998201999999727999850899828876699999999999999802
Q 006548 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (641)
Q Consensus 131 ~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~ 210 (641)
|=+.+|.++.|.|++|+|||||+.-++-...... +. +.|+.-+ .+..+.......+.
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~---~~--------------~~~is~e------~~~~~~~~~~~~~~ 77 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVENACANK---ER--------------AILFAYE------ESRAQLLRNAYSWG 77 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTT---CC--------------EEEEESS------SCHHHHHHHHHTTS
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC---CC--------------CCEEECC------CCHHHHHHHHHHCC
T ss_conf 8986984999991899999999999999998723---24--------------4112126------79999999999829
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH-HHCCCEEEEECCCC---CCCHHHHHHH
Q ss_conf 9985000799999999993990587533058877788898999999999999-71996889939999---9999999999
Q 006548 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL-VMRPHVLFIDEPLY---HLDSVSALLM 286 (641)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqRv~IA~aL-~~~P~iLllDEPTs---gLD~~s~~~i 286 (641)
.+ .. +.. ..+.....+. ........+. .-.|...+ -.+|++++.|--+. +.+.......
T Consensus 78 ~~-----~~----~~~-~~~~~~~~~~------~~~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~ 140 (242)
T d1tf7a2 78 MD-----FE----EME-RQNLLKIVCA------YPESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQF 140 (242)
T ss_dssp CC-----HH----HHH-HTTSEEECCC------CGGGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHH
T ss_pred CC-----HH----HHH-HCCCEEEEEE------ECCHHHHHHH-HHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHH
T ss_conf 98-----69----985-4586179973------0001017999-999999998408853322043143048999999999
Q ss_pred HHHHHHHH-HCCCEEEEEEECC---------HHHHHHCCCEEEEEE
Q ss_conf 99999998-7598799999379---------388982087899982
Q 006548 287 MVTLKKLA-STGCTLLFTINQS---------STEVFGLFDRICLLS 322 (641)
Q Consensus 287 ~~~L~~l~-~~g~tvi~tih~~---------~~~i~~~~D~v~lL~ 322 (641)
+..|.+++ +.+.+++++.|.. ...+...+|-++.|.
T Consensus 141 ~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 141 VIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 9999999998698399998567512554457764046421699999
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.33 E-value=5.8e-05 Score=46.18 Aligned_cols=26 Identities=42% Similarity=0.852 Sum_probs=24.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 92999987999729999999973999
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
|.++.|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.29 E-value=0.00016 Score=43.40 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999987999729999999973999
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
.|+++.|.||+||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.12 E-value=0.00021 Score=42.70 Aligned_cols=25 Identities=40% Similarity=0.582 Sum_probs=21.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 8089299998799972999999997
Q 006548 133 ALPGTMTVIMGPAKSGKSTLLRAIA 157 (641)
Q Consensus 133 ~~~Ge~~aIiGpsGsGKSTLl~~La 157 (641)
+.++.+++|+|+|||||||++.+|+
T Consensus 22 f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 22 FGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 8999989999999998899999999
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.11 E-value=5.1e-05 Score=46.52 Aligned_cols=35 Identities=34% Similarity=0.381 Sum_probs=28.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 89299998799972999999997399999982019999
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i 172 (641)
+|+.++++|+||+|||||+|.|.|...-. +|+|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHH---HCCCCC
T ss_conf 35649998778734878987515176764---035553
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.00013 Score=43.95 Aligned_cols=26 Identities=23% Similarity=0.292 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998799972999999997399999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLPHS 163 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~~~ 163 (641)
+++|.|++|||||||++.|+..+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=97.03 E-value=0.0044 Score=34.38 Aligned_cols=116 Identities=24% Similarity=0.299 Sum_probs=66.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE-EECCEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 0892999987999729999999973999999820199-999972799985089982887669999999999999980299
Q 006548 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV-FVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (641)
Q Consensus 134 ~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I-~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~ 212 (641)
.++.++.+.||.||||||++..+...+.... .+| .+- .+++.. ++... .....
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~---~~i~tiE-dPiE~~-------------~~~~~---------q~~v~ 209 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSE---RNILTVE-DPIEFD-------------IDGIG---------QTQVN 209 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTT---SCEEEEE-SSCCSC-------------CSSSE---------EEECB
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCC---CEEEEEC-CCCCCC-------------CCCCC---------EEEEC
T ss_conf 4105489876787774477999866625787---4699962-674345-------------67887---------02655
Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 85000799999999993990587533058877788898999999999999719968899399999999999999999999
Q 006548 213 GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292 (641)
Q Consensus 213 ~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqRv~IA~aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~ 292 (641)
. . . +.+ ---++..+|=.+|++++..|.. |..++...+ +
T Consensus 210 ~----~------------------~---------~~~----~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~ 247 (401)
T d1p9ra_ 210 P----R------------------V---------DMT----FARGLRAILRQDPDVVMVGEIR---DLETAQIAV----Q 247 (401)
T ss_dssp G----G------------------G---------TBC----HHHHHHHHGGGCCSEEEESCCC---SHHHHHHHH----H
T ss_pred C----C------------------C---------CCC----HHHHHHHHHHHCCCEEEECCCC---CHHHHHHHH----H
T ss_conf 8----7------------------6---------779----9999999984138889845768---759999999----9
Q ss_pred HHHCCCEEEEEEECCHHHHHHCCCEEE
Q ss_conf 987598799999379388982087899
Q 006548 293 LASTGCTLLFTINQSSTEVFGLFDRIC 319 (641)
Q Consensus 293 l~~~g~tvi~tih~~~~~i~~~~D~v~ 319 (641)
.+..|..|+.|+|-.+ .....+|+.
T Consensus 248 aa~tGhlV~tTlHa~~--a~~~~~Rl~ 272 (401)
T d1p9ra_ 248 ASLTGHLVMSTLHTNT--AVGAVTRLR 272 (401)
T ss_dssp HHHTTCEEEEEECCSS--SHHHHHHHH
T ss_pred HHHCCCEEEEEECCCC--HHHHHHHHH
T ss_conf 9724985899833676--676654321
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.00027 Score=41.98 Aligned_cols=27 Identities=33% Similarity=0.671 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999987999729999999973999
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
.|.++.|+||||+||+||.+.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.95 E-value=0.0091 Score=32.40 Aligned_cols=164 Identities=13% Similarity=0.035 Sum_probs=75.0
Q ss_pred EEECE-EEEEECCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCCEEEEEECCEECCCCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 00020-24880892999987999729999999973-99999982019999997279998508998288766999999999
Q 006548 125 VVKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (641)
Q Consensus 125 iL~~v-s~~~~~Ge~~aIiGpsGsGKSTLl~~LaG-~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (641)
-|+++ +|=+.+|+++.|.|++|+|||+|+.-++. ...... ..+ .|+.-+ .+..+.
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~---~~~--------------~~~s~e------~~~~~~ 70 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPG--------------VFVTFE------ETPQDI 70 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCE--------------EEEESS------SCHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC---CCC--------------CCCCCC------CCHHHH
T ss_conf 798855689969839999947999999999999999998568---874--------------201266------799999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHH-HHHHHHHHH--HCCCEEEEECCCCCC-
Q ss_conf 9999980299850007999999999939905875330588777888989999-999999997--199688993999999-
Q 006548 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR-RVRIARELV--MRPHVLFIDEPLYHL- 278 (641)
Q Consensus 203 l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrq-Rv~IA~aL~--~~P~iLllDEPTsgL- 278 (641)
......... . .++..+............. . ........... -+.-....+ .+|++++.|--+.-.
T Consensus 71 ~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~ 139 (242)
T d1tf7a1 71 IKNARSFGW-----D----LAKLVDEGKLFILDASPDP-E-GQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQ 139 (242)
T ss_dssp HHHHGGGTC-----C----HHHHHHTTSEEEEECCCCS-S-CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTST
T ss_pred HHHHHHCCC-----C----HHHHHHHCCHHHHHHCCCH-H-HHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999998499-----8----4898871430244421033-5-444430245899999999998863122200207889987
Q ss_pred ---CHHHHHHHHHHHH-HHHHCCCEEEEEEECCHH--------HHHHCCCEEEEEE
Q ss_conf ---9999999999999-998759879999937938--------8982087899982
Q 006548 279 ---DSVSALLMMVTLK-KLASTGCTLLFTINQSST--------EVFGLFDRICLLS 322 (641)
Q Consensus 279 ---D~~s~~~i~~~L~-~l~~~g~tvi~tih~~~~--------~i~~~~D~v~lL~ 322 (641)
+.......+..+. .+++.+.+++++.|+... .....+|.++.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 140 QYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 60572678999999999998639716884210255422246762335362999988
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.95 E-value=0.00029 Score=41.81 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999987999729999999973999
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
.|.++.|.|++||||||+.+.|+-++.
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 976999889999999999999999986
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.94 E-value=0.00017 Score=43.18 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=26.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 29999879997299999999739999998201999999
Q 006548 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (641)
Q Consensus 137 e~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G 174 (641)
++++|+|++|||||||++.|...+...+..-|-|..++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 09999809999899999999999986798379998316
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.0003 Score=41.73 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998799972999999997399
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
.+.++.|+|++||||||+.+.|+.++
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 87189998999989899999999986
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.75 E-value=0.00045 Score=40.59 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 92999987999729999999973999
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
-+.++|.||+|+|||||.+.|+....
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 32899989999989999999999849
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.74 E-value=0.00045 Score=40.61 Aligned_cols=27 Identities=30% Similarity=0.582 Sum_probs=24.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 929999879997299999999739999
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG~~~~ 162 (641)
.+++.|.|++||||||+.+.|+..+..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~~ 29 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 859999899999989999999997289
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.68 E-value=0.00067 Score=39.50 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999987999729999999973999
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
+|-.++|.||+||||||+.+.|+..+.
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 988899982899988999999999858
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=3.4e-05 Score=47.60 Aligned_cols=35 Identities=23% Similarity=0.080 Sum_probs=26.9
Q ss_pred EEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 000202488089299998799972999999997399
Q 006548 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 125 iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
..++.++.+.+| ++.|+|+|||||||++++|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.57 E-value=0.00068 Score=39.48 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999879997299999999739999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~~ 162 (641)
++||-|++|||||||.+.|+..+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.57 E-value=0.00047 Score=40.48 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999987999729999999973999
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
.|.++.|.|++||||||+.+.|+-++.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.50 E-value=0.00078 Score=39.10 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.48 E-value=0.00083 Score=38.92 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
+.|+||+||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9898999999899999999997
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.48 E-value=0.00084 Score=38.88 Aligned_cols=26 Identities=15% Similarity=0.385 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 92999987999729999999973999
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
...+.|+||||+||+||++-|....+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.48 E-value=0.00073 Score=39.28 Aligned_cols=25 Identities=40% Similarity=0.618 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999987999729999999973999
Q 006548 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 137 e~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
.++.|.||+||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.46 E-value=0.00053 Score=40.16 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=28.4
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 24880892999987999729999999973999999
Q 006548 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164 (641)
Q Consensus 130 s~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~ 164 (641)
...++.+.-+.|.|+.||||||||++|++..++..
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 99998378889994035662578999865301456
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.46 E-value=0.00074 Score=39.23 Aligned_cols=27 Identities=30% Similarity=0.456 Sum_probs=23.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 299998799972999999997399999
Q 006548 137 TMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (641)
Q Consensus 137 e~~aIiGpsGsGKSTLl~~LaG~~~~~ 163 (641)
+.+.|.||+|+|||||++.++..+...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 699998899971999999999999977
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.46 E-value=0.00098 Score=38.46 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998799972999999997399
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
+..+++|+||+||||||+.+.|+..+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.45 E-value=0.001 Score=38.37 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999987999729999999973
Q 006548 137 TMTVIMGPAKSGKSTLLRAIAG 158 (641)
Q Consensus 137 e~~aIiGpsGsGKSTLl~~LaG 158 (641)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.43 E-value=0.001 Score=38.32 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999729999999973999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
+++|+|+.|||||||++.|.....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.43 E-value=0.0012 Score=37.98 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 929999879997299999999739999
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG~~~~ 162 (641)
.++++|.|++||||||+.+.|+.++..
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 988999899998989999999999987
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.40 E-value=0.00083 Score=38.91 Aligned_cols=24 Identities=46% Similarity=0.729 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999729999999973999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
.+.|+|||||||+||++.|+...+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.37 E-value=0.0012 Score=37.93 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999729999999973999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
++||-|++||||||+.+.|+..+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989997879999999999964
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.29 E-value=0.0013 Score=37.75 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99987999729999999973999
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
+.|+|||||||+||.+.|+...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.0013 Score=37.71 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999729999999973999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
.+.|+||+||||||+.+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.25 E-value=0.0015 Score=37.30 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998799972999999997399
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
+-.++.|+||+||||||+.+.|+..+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97289998999999899999999985
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.0023 Score=36.11 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=25.9
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488089299998799972999999997399
Q 006548 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 131 ~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
|=+.+|+++.|.||+|+|||||+.-++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 898599799999589999999999999999
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.18 E-value=0.0017 Score=36.93 Aligned_cols=24 Identities=46% Similarity=0.567 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999729999999973999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
.++|.||+||||||+.+.|+..+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.17 E-value=0.0018 Score=36.82 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999729999999973999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
-++|+|++|+|||||+|.|.|...
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~ 25 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKV 25 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999889999999968985
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.16 E-value=0.0017 Score=37.03 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999729999999973999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
.++|+|++|+|||||++.|.|...
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~~ 28 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDSV 28 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999889999999967999
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.14 E-value=0.0013 Score=37.63 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089299998799972999999997399
Q 006548 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 134 ~~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
+.+.++.|+||+||||||+.+.|+...
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 678289998999998799999999986
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.12 E-value=0.001 Score=38.36 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
+||+|++++|||||+|.|+|..
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999987999999996899
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.09 E-value=0.002 Score=36.47 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999729999999973999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
-+||+|.+|+|||||+|.|.|...
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 799989999978999999958886
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.08 E-value=0.0022 Score=36.30 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999729999999973999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
.++|+|++|+|||||++.|+|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.08 E-value=0.0018 Score=36.85 Aligned_cols=27 Identities=30% Similarity=0.274 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 929999879997299999999739999
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG~~~~ 162 (641)
...+.+.||+|||||||.+.|++....
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 979998897998899999999998651
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.08 E-value=0.0016 Score=37.06 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
.+.|+||+||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.06 E-value=0.002 Score=36.56 Aligned_cols=22 Identities=55% Similarity=0.632 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
+.|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.03 E-value=0.0027 Score=35.71 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998799972999999997399
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
+|--+.|+||+||||||..+.|+..+
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 96389998999998899999999986
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.0023 Score=36.10 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
++.|+||+||||||..+.|+..+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.01 E-value=0.0019 Score=36.67 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
.+.|+|++||||||+.+.||-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.95 E-value=0.0024 Score=36.08 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
-++|+|.+|+|||||++.|.|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.90 E-value=0.0031 Score=35.29 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=29.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEE
Q ss_conf 892999987999729999999973999999820199999972
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~ 176 (641)
.|.++.+.|.|||||||+.+.|...+.... ..-.+.++|..
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~l~~~~-~~~~~~ldgD~ 63 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQLVRDR-RVHAYRLDGDN 63 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CCCEEEECHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHC-CCEEEEECCHH
T ss_conf 986999989999998999999998877742-75089975367
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.003 Score=35.41 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
.++|+|.+++|||||+|.|.|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999799998999999995898
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.88 E-value=0.0031 Score=35.32 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
.++|+|.+|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.0027 Score=35.75 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 92999987999729999999973999
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
-=+++|-|++||||||+.+.|..++.
T Consensus 80 P~iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 88999968999987689999999973
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.86 E-value=0.0026 Score=35.86 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998799972999999997399
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
|+.-+.+.||+|+|||.|.++||...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 98669998999988889999986213
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.86 E-value=0.0025 Score=35.89 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999729999999973999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
.++|+|.+|+|||||+|.|.|...
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899989999869999999858984
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.0021 Score=36.39 Aligned_cols=27 Identities=30% Similarity=0.254 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999987999729999999973999
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
..-.++|.|+.|+|||||++.|+..+.
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 832897438999989999999999997
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.80 E-value=0.0033 Score=35.15 Aligned_cols=24 Identities=42% Similarity=0.624 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999729999999973999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
+++|.||+||||+|+.+.|+..+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.80 E-value=0.0029 Score=35.48 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
+.|+||+||||||+.+.|+..+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.78 E-value=0.003 Score=35.43 Aligned_cols=23 Identities=43% Similarity=0.537 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99987999729999999973999
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
+.++|++||||||+.+.|+.++.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.75 E-value=0.002 Score=36.57 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
+||+|.+++|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.71 E-value=0.004 Score=34.63 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 892999987999729999999973
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAG 158 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG 158 (641)
.-+++.++|++||||||+.+-++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999989999989999999997
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.67 E-value=0.0023 Score=36.13 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=23.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 92999987999729999999973999
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
+..++|-|+.||||||+++.|+..+.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.66 E-value=0.0041 Score=34.60 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999987999729999999973999
Q 006548 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 137 e~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
.+++++|.+|+|||||.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.60 E-value=0.0032 Score=35.22 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999987999729999999973999
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
..-+++|-|+.||||||+++.|+..+.
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 861999889999888999999998707
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.56 E-value=0.0025 Score=35.88 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
-++|+|++|+|||||++.|.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996788
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.56 E-value=0.0046 Score=34.25 Aligned_cols=25 Identities=48% Similarity=0.678 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999987999729999999973999
Q 006548 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 137 e~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
=-++++|++++|||||++.|.|...
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~ 26 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREA 26 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 8999989999989999999968886
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.52 E-value=0.0048 Score=34.15 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
.+.|+||+||||||+.+.|+..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.51 E-value=0.0045 Score=34.31 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
-+.|+||+||||||+.+.|+..+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.50 E-value=0.0045 Score=34.34 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 29999879997299999999739999
Q 006548 137 TMTVIMGPAKSGKSTLLRAIAGRLPH 162 (641)
Q Consensus 137 e~~aIiGpsGsGKSTLl~~LaG~~~~ 162 (641)
+++.|.|++||||||+.+.|+.++..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.49 E-value=0.0056 Score=33.74 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 92999987999729999999973999
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
...+.+.||+|+||||+.++||....
T Consensus 52 ~~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 52 FRAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 74499987999988899999999987
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.48 E-value=0.0038 Score=34.76 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998799972999999997399
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
..-.++|.|+.|+|||||++.|....
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 81598611799888999999999987
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.48 E-value=0.0067 Score=33.22 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=25.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8929999879997299999999739999
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~~ 162 (641)
.|.++++-|+.||||||+.+.|+..+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.47 E-value=0.0053 Score=33.86 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=24.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 08929999879997299999999739999
Q 006548 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (641)
Q Consensus 134 ~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~ 162 (641)
+.|.+++|-|+.||||||+.+.|+..+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.43 E-value=0.0045 Score=34.31 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
+.|+|++|+|||||++.+++-.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999996598
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.41 E-value=0.0046 Score=34.26 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999729999999973999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
-++++|++|+|||||++.|.+...
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~ 25 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRL 25 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999999999999958998
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.40 E-value=0.0053 Score=33.85 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
-++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.38 E-value=0.0053 Score=33.89 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9299998799972999999997399
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
.-.+.|+||+||||||+.+.|+-.+
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 2169998899998799999999997
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.38 E-value=0.0047 Score=34.17 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
+||+|...+|||||++.|.+..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.36 E-value=0.005 Score=34.03 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999879997299999999739
Q 006548 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 137 e~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
=++||.|++||||||+.+.|.-+
T Consensus 4 ~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 89999898877899999999987
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.34 E-value=0.005 Score=34.03 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999879997299999999739999
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRLPH 162 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~~~ 162 (641)
++|+|.+|+|||||++.+.+....
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~~~ 31 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGEVV 31 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 999999998999999999679876
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.33 E-value=0.0065 Score=33.33 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=24.6
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48808929999879997299999999739
Q 006548 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 131 ~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
|=+.+|+++.|.|++|+|||||..-++-.
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99869969999838999889999999998
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.32 E-value=0.0022 Score=36.26 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999729999999973999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
++||.|+|||||||+.+.|.....
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989997809999999999971
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.28 E-value=0.0051 Score=33.99 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
.+.|+||+||||||..+.|+-..
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.27 E-value=0.0065 Score=33.32 Aligned_cols=26 Identities=23% Similarity=0.524 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998799972999999997399
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
.+..+.|.||+|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.20 E-value=0.0065 Score=33.29 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879997299999999739
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
++||+|...+|||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.15 E-value=0.0083 Score=32.63 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998799972999999997399
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
+..-+.+.||+|+|||+|.+.||...
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHC
T ss_conf 88867866899888228999999982
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.14 E-value=0.0069 Score=33.13 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
.+.|+||.||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.13 E-value=0.0079 Score=32.76 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999987999729999999973999
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
.|..++|-|+.||||||+.+.|+..+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.13 E-value=0.0026 Score=35.77 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998799972999999997399
Q 006548 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 137 e~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
-.++|+|.+++|||||+|.|.+..
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789998899998999999985898
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.08 E-value=0.0067 Score=33.23 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
-++++|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.05 E-value=0.0075 Score=32.91 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999729999999973999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
.+.+.||+|+||||+.++|+.-..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 489879999738899999985038
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=95.02 E-value=0.078 Score=26.54 Aligned_cols=30 Identities=40% Similarity=0.537 Sum_probs=25.8
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488089299998799972999999997399
Q 006548 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 131 ~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
|=++.|.++-+-||+|+|||||+-.++...
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 986675478980587652279999999999
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.01 E-value=0.0089 Score=32.46 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998799972999999997399
Q 006548 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 137 e~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
=+++|-|+.|||||||.+.|.-.+
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899837998788999999999999
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.00 E-value=0.0081 Score=32.71 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
.+.|.||+|+||||+.++++..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69997899974879999999998
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.95 E-value=0.0086 Score=32.53 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999729999999973
Q 006548 138 MTVIMGPAKSGKSTLLRAIAG 158 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG 158 (641)
++||.|+.||||||+.+.+..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.95 E-value=0.011 Score=31.97 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=22.7
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 488089299998799972999999997
Q 006548 131 GYALPGTMTVIMGPAKSGKSTLLRAIA 157 (641)
Q Consensus 131 ~~~~~Ge~~aIiGpsGsGKSTLl~~La 157 (641)
|=+.+|+++.|.|++|+|||||.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 995588799998589898899999999
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.87 E-value=0.0084 Score=32.60 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998799972999999997399
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
|-.-+.+.||+|+|||+|.+.||...
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 98079988969998899999986201
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.87 E-value=0.011 Score=31.76 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=25.7
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 2488089299998799972999999997399
Q 006548 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 130 s~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
.|=+.+|+++.|.|++|+|||||+.-++-..
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7986288599999179999899999999999
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.85 E-value=0.0089 Score=32.46 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998799972999999997399
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
+..-+.+.||+|+|||+|.+++|+..
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 88757887899876304778878771
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.81 E-value=0.0089 Score=32.44 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
.+.+.||+|+||||+.+++++..
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 38988979987888999999984
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.77 E-value=0.012 Score=31.67 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=24.1
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4880892999987999729999999973
Q 006548 131 GYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (641)
Q Consensus 131 ~~~~~Ge~~aIiGpsGsGKSTLl~~LaG 158 (641)
|=+.+|+++.|.|++|+|||+|.--++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9976897999988998878899999999
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.77 E-value=0.02 Score=30.26 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8929999879997299999999739
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
.|.-+.+.|+||+|||||.-.|..+
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 9999999808999989999999985
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.68 E-value=0.012 Score=31.62 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998799972999999997399
Q 006548 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 137 e~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
.-+.+.||+|+|||+|.+.|++..
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 648876689888359999999873
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.66 E-value=0.0098 Score=32.19 Aligned_cols=24 Identities=25% Similarity=0.384 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998799972999999997399
Q 006548 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 137 e~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
--++++|.+|+|||||++.|.+..
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999989899999996688
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.62 E-value=0.0087 Score=32.52 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999729999999973999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
-+.++||+|+|||-|.+.||+.+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 479989999889999999998738
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.62 E-value=0.01 Score=32.02 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
++++|++|+|||||++.+.+..
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999997197
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.61 E-value=0.02 Score=30.25 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8929999879997299999999739
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
.|.-+.+.|+||+|||||.-.|..+
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999818999989999999985
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.58 E-value=0.013 Score=31.39 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998799972999999997399
Q 006548 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 137 e~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
.-+.+.||+|+|||+|.++++...
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 646876699888308999999874
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.52 E-value=0.014 Score=31.28 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879997299999999739
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
+++|.|+.||||||..+++..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.52 E-value=0.012 Score=31.57 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
+.+.||+|+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.47 E-value=0.017 Score=30.71 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8929999879997299999999739999
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~~ 162 (641)
+...+.|.||+|+||||+++.++..+..
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 8881688898999899999999999754
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.37 E-value=0.018 Score=30.56 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999987999729999999973999
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
.+.+++++||+|+||||.+-=||.+..
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 977999989999988999999999999
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.32 E-value=0.003 Score=35.43 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
++++|.+++|||||++.|+|..
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.28 E-value=0.013 Score=31.37 Aligned_cols=34 Identities=29% Similarity=0.529 Sum_probs=26.2
Q ss_pred CEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 1000202488089299998799972999999997399
Q 006548 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 124 ~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
.+|+.++. |=-+++|+||-++|||||||.|.|..
T Consensus 23 ~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 23 KILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99970799---87999988999997999999980998
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.15 E-value=0.016 Score=30.93 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
++++|++|+|||||++-+.+..
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999969899999997098
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.14 E-value=0.015 Score=30.97 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879997299999999739
Q 006548 139 TVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~ 159 (641)
++++|.+|+|||||++-+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.07 E-value=0.029 Score=29.28 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=22.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 08929999879997299999999739
Q 006548 134 LPGTMTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 134 ~~Ge~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
-.|.-+.|.|+||+|||||.-.|..+
T Consensus 13 ~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 13 VYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 99999999808999999999999984
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.04 E-value=0.027 Score=29.47 Aligned_cols=29 Identities=34% Similarity=0.464 Sum_probs=24.7
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48808929999879997299999999739
Q 006548 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 131 ~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
|=+.+|.++-|.||+|+|||||+--++.-
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99667358998057774789999999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.99 E-value=0.014 Score=31.23 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
-++++|++|+|||||++.+.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.98 E-value=0.017 Score=30.66 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99987999729999999973999
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
+||+|.+.+|||||+|.|+|-..
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~~ 25 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVDV 25 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC---
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 76889999989999999978897
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.95 E-value=0.019 Score=30.39 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
+.+.||+|+||||+.++++.-+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHH
T ss_conf 9998899987054699999997
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.94 E-value=0.006 Score=33.52 Aligned_cols=27 Identities=37% Similarity=0.505 Sum_probs=23.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 929999879997299999999739999
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG~~~~ 162 (641)
|.-+.|.|+.|+|||||++.+++++++
T Consensus 28 ~h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 28 IGGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 970899889985299999999873798
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.93 E-value=0.023 Score=29.81 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998799972999999997399
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
|...+.++||+|+|||.|.+.||..+
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 76589997787500699999998633
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.90 E-value=0.017 Score=30.72 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
.++++|.-.||||||+|+|+|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.88 E-value=0.022 Score=29.98 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999879997299999999739999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~~ 162 (641)
+++|-|.-||||||+++.|...+..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999899878999999999999987
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.88 E-value=0.019 Score=30.42 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
.++++|.-+||||||++.|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.84 E-value=0.022 Score=30.02 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
++|+|++|+|||||++-+.+-.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999919899999996199
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.82 E-value=0.017 Score=30.70 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
++++|.+|+|||||++-+.+-.
T Consensus 6 i~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999979989999999998098
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.82 E-value=0.019 Score=30.32 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
++++|++|+|||||++.+.+-.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999909899999998299
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.81 E-value=0.022 Score=30.00 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998799972999999997399
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
+..+++++||+|+||||.+-=||.+.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99899998999998899999999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.64 E-value=0.022 Score=30.04 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879997299999999739
Q 006548 139 TVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~ 159 (641)
++++|.+|+|||||++-+.+.
T Consensus 5 v~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999829
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.60 E-value=0.028 Score=29.36 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999987999729999999973999
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
...+++++||+|+||||.+-=||.+..
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 986899989999988999999999999
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.60 E-value=0.032 Score=28.97 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99987999729999999973999
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
++++|.+|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.59 E-value=0.026 Score=29.58 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=24.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8089299998799972999999997399
Q 006548 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 133 ~~~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
+..|+-.+|.|++|+|||||+..++.-.
T Consensus 40 igrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 40 IGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4578755686799988789999999977
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.56 E-value=0.026 Score=29.56 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879997299999999739
Q 006548 139 TVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~ 159 (641)
++++|.+|+|||||++-+.+-
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.56 E-value=0.02 Score=30.25 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879997299999999739
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
-++|+|.+|+|||||++-+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998992989999999719
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.53 E-value=0.024 Score=29.78 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
++++|.+|+|||||++-+.+-.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~~ 26 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNKK 26 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999919899999997198
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.49 E-value=0.031 Score=29.02 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879997299999999739
Q 006548 139 TVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~ 159 (641)
++++|.+|+|||||++-+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.49 E-value=0.16 Score=24.50 Aligned_cols=160 Identities=15% Similarity=0.162 Sum_probs=73.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 89299998799972999999997399999982019999997279998508998288766999999999999998029985
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~ 214 (641)
...+++|.|..|.|||||.+.+....... ....+..+.|+.-... + +..+ +
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~~~~~-------------~~~~f~~~~Wv~vs~~-~---~~~~-l----------- 93 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSKSDQL-------------IGINYDSIVWLKDSGT-A---PKST-F----------- 93 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSST-------------BTTTBSEEEEEECCCC-S---TTHH-H-----------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHH-------------HHHCCCEEEEEEECCC-C---CHHH-H-----------
T ss_conf 84089997799788899999999855655-------------4012764899993687-7---7778-9-----------
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 000799999999993990587533058877788898999999999999719-9688993999999999999999999999
Q 006548 215 FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR-PHVLFIDEPLYHLDSVSALLMMVTLKKL 293 (641)
Q Consensus 215 ~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqRv~IA~aL~~~-P~iLllDEPTsgLD~~s~~~i~~~L~~l 293 (641)
...+...+..++-.+..+.. ..... -..+.+..+..+.+.+ +-++++|.-- |. .. ++.+
T Consensus 94 ----~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~L~~kr~LlVLDDv~---~~-~~------~~~~ 153 (277)
T d2a5yb3 94 ----DLFTDILLMLKSEDDLLNFP-----SVEHV-TSVVLKRMICNALIDRPNTLFVFDDVV---QE-ET------IRWA 153 (277)
T ss_dssp ----HHHHHHHHHHTTTSCCTTCC-----CCTTC-CHHHHHHHHHHHHTTSTTEEEEEEEEC---CH-HH------HHHH
T ss_pred ----HHHHHHHHHHHCCHHHCCCC-----CCHHH-HHHHHHHHHHHHHHCCCCEEEECCHHH---HH-HH------HHHH
T ss_conf ----99999999872202202786-----32123-369999999999844688167525066---77-66------5552
Q ss_pred HHCCCEEEEEEECCHHHHHHC-CCEEEEEECCEEEEEECHHHHHHHHHHCCCCCCCC
Q ss_conf 875987999993793889820-87899982994889809257988756349999998
Q 006548 294 ASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIM 349 (641)
Q Consensus 294 ~~~g~tvi~tih~~~~~i~~~-~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~ 349 (641)
...+..||+|+... .+... .+....+. +..=+.+++.+-|...+++.+..
T Consensus 154 ~~~~srilvTTR~~--~v~~~~~~~~~~~~----l~~L~~~ea~~Lf~~~~~~~~~~ 204 (277)
T d2a5yb3 154 QELRLRCLVTTRDV--EISNAASQTCEFIE----VTSLEIDECYDFLEAYGMPMPVG 204 (277)
T ss_dssp HHTTCEEEEEESBG--GGGGGCCSCEEEEE----CCCCCHHHHHHHHHHTSCCCC--
T ss_pred CCCCCEEEEEEEHH--HHHHHCCCCCCEEE----CCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 04575599996448--99986378871687----78899799999999984776674
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.43 E-value=0.034 Score=28.84 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=25.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 80892999987999729999999973999
Q 006548 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 133 ~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
.+||.++++-|+=|||||||.+.++.-+-
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 79982999966877658899999876422
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.40 E-value=0.034 Score=28.81 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999729999999973999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
-+||+|.-.+|||||++.|.|...
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999993458849999999970344
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.39 E-value=0.025 Score=29.60 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
++++|++|+|||||++-+.+-.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999939999999996299
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.39 E-value=0.037 Score=28.57 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99987999729999999973999
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
+.++|.+|+|||||++.+.+...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999899299999999972867
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.31 E-value=0.023 Score=29.84 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
++++|.+|+|||||++.+.+-.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~~ 29 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQGL 29 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999919899999997299
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.27 E-value=0.024 Score=29.78 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
++++|.+|+|||||++.+++-.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999967899999998688
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.23 E-value=0.025 Score=29.65 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879997299999999739
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
-++|+|.+|+|||||++-+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.21 E-value=0.025 Score=29.69 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
++|+|+.|+|||||++-+.+..
T Consensus 9 ivvvG~~~vGKTsli~~l~~~~ 30 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDDT 30 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999909899999996198
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.19 E-value=0.031 Score=29.06 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999987999729999999973999
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
.-.+++++||+|+||||.+-=||.+..
T Consensus 8 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 8 APFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 997999989999998999999999999
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.18 E-value=0.03 Score=29.18 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999987999729999999973999
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
...+++++||+|+||||.+-=||.+..
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998999989999998999999999999
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.16 E-value=0.03 Score=29.12 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
+.+.||+|+||||+.++++.-+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899877558999999985
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.08 E-value=0.024 Score=29.77 Aligned_cols=25 Identities=40% Similarity=0.501 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9299998799972999999997399
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
+=-++|+|.+.+|||||+++|++-.
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 7379997899998999999997789
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=93.07 E-value=0.034 Score=28.81 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=24.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0892999987999729999999973999
Q 006548 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 134 ~~Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
..+..+.+.||+|+|||++.+.|++...
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767699989999888999999999859
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.06 E-value=0.029 Score=29.25 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999729999999973
Q 006548 138 MTVIMGPAKSGKSTLLRAIAG 158 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG 158 (641)
-++|+|+.|+|||||...|..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999994889809999999999
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.031 Score=29.01 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
-++++|.+|+|||||++-+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.031 Score=29.04 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
++++|.+|+|||||++.+.+-.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989908899999997199
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.91 E-value=0.022 Score=29.95 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999729999999973999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
++.+.||+|+||||+++.++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899678999899999999999987
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.88 E-value=0.028 Score=29.28 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=26.2
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCH
Q ss_conf 199688993999999999999999999999875987999993793
Q 006548 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (641)
Q Consensus 264 ~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~g~tvi~tih~~~ 308 (641)
.+.+++++||.-. |.......+.+.+.... ....+|++.+++.
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~ 172 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMS 172 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCC-CCCCCEEEECCCC
T ss_conf 8724999424333-45431112210022135-6643000102111
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.77 E-value=0.035 Score=28.70 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
++|+|.+|+|||||++-+.+..
T Consensus 7 ivlvG~~~vGKTsli~~~~~~~ 28 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEKK 28 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999949899999997299
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.77 E-value=0.036 Score=28.63 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
++++|.+|+|||||++-+.+..
T Consensus 5 v~liG~~~vGKTsLl~~~~~~~ 26 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAGR 26 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999929899999997399
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.75 E-value=0.019 Score=30.43 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879997299999999739
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
-++++|++|+|||||++-+.+-
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999889999887338
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=92.70 E-value=0.043 Score=28.13 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998799972999999997399
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
|...+.+.||+|+|||.|.+.|++..
T Consensus 122 ~~g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 122 ASGMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp ESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88638887799850889999999986
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.67 E-value=0.036 Score=28.64 Aligned_cols=24 Identities=29% Similarity=0.363 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHH---HCCCC
Q ss_conf 9999879997299999999---73999
Q 006548 138 MTVIMGPAKSGKSTLLRAI---AGRLP 161 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~L---aG~~~ 161 (641)
-++|+|+.|+|||||...| +|...
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~ 34 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH 34 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 999995898998999999999648534
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.63 E-value=0.033 Score=28.86 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
+.|+|.+|+|||||++.+.+-.
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989938899999997199
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.62 E-value=0.038 Score=28.50 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
-++|+|.+|+|||||++-+.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=92.61 E-value=0.047 Score=27.92 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999879997299999999739
Q 006548 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 137 e~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
.+++|.|+-||||||..+.|+..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999799998899999999986
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.61 E-value=0.039 Score=28.41 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879997299999999739
Q 006548 139 TVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~ 159 (641)
++|+|.+|+|||||++-+..-
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.47 E-value=0.036 Score=28.65 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
++++|.+|+|||||++-+.+..
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~~ 24 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYDS 24 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989909899999998499
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.45 E-value=0.042 Score=28.21 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
++|+|.+|+|||||++-+.+-.
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCENK 27 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999939899999998299
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.30 E-value=0.057 Score=27.38 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=22.8
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4880892999987999729999999973
Q 006548 131 GYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (641)
Q Consensus 131 ~~~~~Ge~~aIiGpsGsGKSTLl~~LaG 158 (641)
+=+..|.++.+.||+|+|||||+-.++.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9866633699964887488999999999
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.29 E-value=0.039 Score=28.42 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879997299999999739
Q 006548 139 TVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~ 159 (641)
++++|..|+|||||++-+.+-
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990999999999709
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.24 E-value=0.025 Score=29.63 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
++++|.+|+|||||++.+.+..
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~~ 30 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSEDA 30 (173)
T ss_dssp EEEECCCCC-------------
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999949999999997098
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.13 E-value=0.049 Score=27.82 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
++++|++|+|||+|++-+.+-.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~~ 26 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTKR 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989978999999997398
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.11 E-value=0.043 Score=28.14 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879997299999999739
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
-++|+|.+|+|||||++-+.+-
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.04 E-value=0.049 Score=27.78 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
-++++|.+|+|||||++-+.+-.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~ 27 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999919899999997299
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.04 E-value=0.054 Score=27.56 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 29999879997299999999739999
Q 006548 137 TMTVIMGPAKSGKSTLLRAIAGRLPH 162 (641)
Q Consensus 137 e~~aIiGpsGsGKSTLl~~LaG~~~~ 162 (641)
+.++|=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.01 E-value=0.051 Score=27.68 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879997299999999739
Q 006548 139 TVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~ 159 (641)
+.++|.+|+|||||++-+.+-
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999709
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.00 E-value=0.05 Score=27.73 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879997299999999739
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
-++++|..++|||||++.|...
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.94 E-value=0.029 Score=29.19 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
-+.++|++|+|||||++.+.+-.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999987899999984488
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.93 E-value=0.045 Score=28.04 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHH-CCCCCCCCCEEEEEEC
Q ss_conf 9299998799972999999997-3999999820199999
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIA-GRLPHSARMYGEVFVN 173 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~La-G~~~~~~~~~G~I~i~ 173 (641)
...+.|+|++|+|||++++.+. .....+. +-|.++
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~---~~iiiD 85 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGD---RMVIVD 85 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCC---CEEEEE
T ss_conf 265899907999689999999999984799---889996
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.92 E-value=0.055 Score=27.51 Aligned_cols=50 Identities=6% Similarity=0.175 Sum_probs=39.1
Q ss_pred HHHCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
Q ss_conf 97199688993999999-999999999999999875987999993793889
Q 006548 262 LVMRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 311 (641)
Q Consensus 262 L~~~P~iLllDEPTsgL-D~~s~~~i~~~L~~l~~~g~tvi~tih~~~~~i 311 (641)
...+.++|++|+--.=. +...+..+..++..+.+.|+.+|+|...+..+.
T Consensus 94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 94 MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHC
T ss_conf 876213010112655058657788999999987631663899548751001
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.89 E-value=0.053 Score=27.59 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
-++++|.+|+|||||++-+.+-.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989978999999997197
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.89 E-value=0.054 Score=27.54 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999729999999973999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
-++|+|-+.+|||||+++|++-..
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~ 27 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGI 27 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 488889999988999999977997
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.87 E-value=0.053 Score=27.58 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799972999999997399
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
-++++|.+|+|||||++-+.+-.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~ 30 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999949899999998598
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.86 E-value=0.057 Score=27.37 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999729999999973
Q 006548 138 MTVIMGPAKSGKSTLLRAIAG 158 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG 158 (641)
-+.++|.+|+|||||++-+..
T Consensus 8 KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 799998999988999998950
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.77 E-value=0.055 Score=27.47 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879997299999999739
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
-++|+|.+|+|||||++-+.+-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.76 E-value=0.056 Score=27.45 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879997299999999739
Q 006548 139 TVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~ 159 (641)
++++|++|+|||||++-+.+-
T Consensus 9 i~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992999999999719
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.61 E-value=0.053 Score=27.59 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879997299999999739
Q 006548 139 TVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~ 159 (641)
++|+|.+|+|||||++-+..-
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.56 E-value=0.061 Score=27.20 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999729999999973
Q 006548 139 TVIMGPAKSGKSTLLRAIAG 158 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG 158 (641)
+.++|.+|+|||||++-+.-
T Consensus 5 ivllG~~~vGKTsll~r~~f 24 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMRI 24 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99998999998999998846
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.42 E-value=0.032 Score=28.94 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879997299999999739
Q 006548 139 TVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~ 159 (641)
++++|.+|+|||||++-+++-
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990889999999849
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.07 E-value=0.063 Score=27.10 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
++++|.+|+|||+|++-+.+-.
T Consensus 6 vvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999969999999997199
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=90.89 E-value=0.088 Score=26.21 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999987999729999999973999
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
|...+.+.||+|+|||.|.+.|+..+.
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 766999978886248999999999835
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.87 E-value=0.11 Score=25.54 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=23.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8808929999879997299999999739
Q 006548 132 YALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 132 ~~~~Ge~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
.+..|+-.+|.|++|+|||||+.-++..
T Consensus 64 pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 64 PYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 6367887776679998989999999998
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.57 E-value=0.15 Score=24.79 Aligned_cols=27 Identities=33% Similarity=0.532 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999987999729999999973999
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
|.=-++|+|.=.+|||||++.|.|...
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 970899997248869999999970412
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.54 E-value=0.086 Score=26.26 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
++++|.+|+|||+|++-+.+-.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~~ 27 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999989989999999997098
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=90.53 E-value=0.15 Score=24.74 Aligned_cols=26 Identities=27% Similarity=0.164 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998799972999999997399999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLPHS 163 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~~~ 163 (641)
.+.|=|+-|+||||+++.|+..+...
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~ 33 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGG 33 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 99998886678999999999986569
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.37 E-value=0.086 Score=26.26 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879997299999999739
Q 006548 139 TVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~ 159 (641)
+.++|.+|+|||+|++-+..-
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999995989999999729
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.22 E-value=0.069 Score=26.85 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879997299999999739
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
++.|.|.=|||||||++-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEECCCCCHHHHHHHHHHC
T ss_conf 8998648889999999999856
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=90.19 E-value=0.11 Score=25.67 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999987999729999999973999
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
++. +..+||+|+|||-|.+.||....
T Consensus 68 ~~n-iLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 68 KSN-ILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp CCC-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCC-EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 753-24418998637899999986443
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=90.06 E-value=0.16 Score=24.60 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999729999999973999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
.++|=|+-|+||||+++.|+....
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989867789999999999817
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=88.78 E-value=0.2 Score=23.97 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9299998799972999999997399
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
...+.+-||+|+||||+.++++..+
T Consensus 34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l 58 (239)
T d1njfa_ 34 HHAYLFSGTRGVGKTSIARLLAKGL 58 (239)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7059888899875899999999984
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=88.76 E-value=0.13 Score=25.19 Aligned_cols=19 Identities=37% Similarity=0.627 Sum_probs=17.0
Q ss_pred CCCEEEEECCCCCCHHHHH
Q ss_conf 8929999879997299999
Q 006548 135 PGTMTVIMGPAKSGKSTLL 153 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl 153 (641)
.|++....|.||+|||||-
T Consensus 13 ~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 13 KGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCCCCCE
T ss_conf 8988999704779856023
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=88.71 E-value=0.21 Score=23.85 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 92999987999729999999973999
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
...+.+.||+|+||||+.+.++..+-
T Consensus 24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 24 HHALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 73798889998759999999998210
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=88.48 E-value=0.13 Score=25.23 Aligned_cols=19 Identities=37% Similarity=0.629 Sum_probs=16.9
Q ss_pred CCCEEEEECCCCCCHHHHH
Q ss_conf 8929999879997299999
Q 006548 135 PGTMTVIMGPAKSGKSTLL 153 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl 153 (641)
.|++....|.||.|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEECCCCCCCCCCC
T ss_conf 9988999736879814221
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=88.21 E-value=0.25 Score=23.32 Aligned_cols=19 Identities=42% Similarity=0.667 Sum_probs=17.2
Q ss_pred CCCEEEEECCCCCCHHHHH
Q ss_conf 8929999879997299999
Q 006548 135 PGTMTVIMGPAKSGKSTLL 153 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl 153 (641)
.|++....|-||.|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCCCCCE
T ss_conf 8987999736778812051
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.03 E-value=0.19 Score=24.14 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 29999879997299999999739999
Q 006548 137 TMTVIMGPAKSGKSTLLRAIAGRLPH 162 (641)
Q Consensus 137 e~~aIiGpsGsGKSTLl~~LaG~~~~ 162 (641)
.-..|+|++|.|||++..-++.++..
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri~~ 65 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRIVQ 65 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 89679888988677999999999981
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.96 E-value=0.16 Score=24.51 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799972999999997399
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
+.++|.+|+|||||++-+..-.
T Consensus 5 iv~lG~~~vGKTsll~r~~~~~ 26 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRIIH 26 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999998899999996799
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.47 E-value=0.15 Score=24.74 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHH---CCCC
Q ss_conf 9998799972999999997---3999
Q 006548 139 TVIMGPAKSGKSTLLRAIA---GRLP 161 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~La---G~~~ 161 (641)
++|+|+-++|||||++.|. |...
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~g~i~ 45 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRAGIIS 45 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 99996888869999999999779866
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=87.35 E-value=0.14 Score=24.97 Aligned_cols=16 Identities=44% Similarity=0.536 Sum_probs=13.5
Q ss_pred EEEEECCCCCCHHHHH
Q ss_conf 9999879997299999
Q 006548 138 MTVIMGPAKSGKSTLL 153 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl 153 (641)
.+.|.|+.||||||.|
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEECCCCCHHHHH
T ss_conf 9899952986689999
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=87.30 E-value=0.14 Score=24.89 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998799972999999997399999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLPHS 163 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~~~ 163 (641)
.++|=|+-|+||||+++.|+..+...
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~ 32 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAIT 32 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 99998887788999999999987346
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.26 E-value=0.2 Score=23.91 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9998799972999999997399999
Q 006548 139 TVIMGPAKSGKSTLLRAIAGRLPHS 163 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~~~~~ 163 (641)
+.++|.+|+|||||++-+..-.-++
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~t 29 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEAG 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 9999999988899999884089797
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=87.10 E-value=0.21 Score=23.80 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 929999879997299999999739
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
.=-+|++|.-.+|||||++.|.+.
T Consensus 3 ~ini~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 718999958898099999999999
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=86.52 E-value=0.37 Score=22.28 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999987999729999999973999
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~ 161 (641)
.+-.++|+|-+.+|||||+|.|.|...
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 752789986675443555425426615
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=86.25 E-value=0.21 Score=23.83 Aligned_cols=17 Identities=24% Similarity=0.428 Sum_probs=13.8
Q ss_pred CEEEEECCCCCCHHHHH
Q ss_conf 29999879997299999
Q 006548 137 TMTVIMGPAKSGKSTLL 153 (641)
Q Consensus 137 e~~aIiGpsGsGKSTLl 153 (641)
.-+.|.|+.|+||||.+
T Consensus 15 ~~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 15 GPCLVLAGAGSGKTRVI 31 (306)
T ss_dssp SEEEECCCTTSCHHHHH
T ss_pred CCEEEEEECCCCHHHHH
T ss_conf 99899962884389999
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=85.93 E-value=0.36 Score=22.37 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8929999879997299999999739
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
..+.+.|.|.||||||+-.+.+...
T Consensus 85 ~~QsIiisGeSGsGKTe~~k~il~y 109 (684)
T d1lkxa_ 85 ENQCVIISGESGAGKTEASKKIMQF 109 (684)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9818999738989989999999999
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=85.80 E-value=0.25 Score=23.32 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999729999999973
Q 006548 138 MTVIMGPAKSGKSTLLRAIAG 158 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG 158 (641)
-++++|.-++|||||+..|..
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll~ 25 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLLM 25 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 899994479999999999999
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=84.98 E-value=0.4 Score=22.08 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998799972999999997399
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
..+.+.|.|.||||||+-.|.+...+
T Consensus 90 ~~Q~IiisGeSGaGKTe~~k~il~yL 115 (710)
T d1br2a2 90 EDQSILCTGESGAGKTENTKKVIQYL 115 (710)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99179997189888899999999999
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=84.98 E-value=0.4 Score=22.08 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998799972999999997399
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
..+.+.|.|.||||||.-.+.+...+
T Consensus 124 ~nQsIiisGeSGaGKTe~~k~il~yL 149 (712)
T d1d0xa2 124 QNQSLLITGESGAGKTENTKKVIQYL 149 (712)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99169996799888899999999999
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=84.64 E-value=0.39 Score=22.14 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=17.6
Q ss_pred CCCEEEEECCCCCCHHHHHHH
Q ss_conf 892999987999729999999
Q 006548 135 PGTMTVIMGPAKSGKSTLLRA 155 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~ 155 (641)
.+.++.|.||.|+||||++..
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHHH
T ss_pred CCCEEEEECCCCCCCEEHHHH
T ss_conf 088599976898875216999
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.34 E-value=0.38 Score=22.22 Aligned_cols=25 Identities=24% Similarity=0.515 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999879997299999999739999
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~~ 162 (641)
-..|+|++|.|||++..-|+.++..
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri~~ 69 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7399835875447999999999980
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=84.20 E-value=0.32 Score=22.73 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=24.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88089299998799972999999997399
Q 006548 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 132 ~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
....-.++.+.||.++||||++++|+...
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99761799998589887789999999983
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=83.61 E-value=0.39 Score=22.12 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879997299999999739
Q 006548 139 TVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG~ 159 (641)
++++|.-.+|||||++.|...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999937898989999999998
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=83.39 E-value=0.46 Score=21.68 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=20.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8929999879997299999999739
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
..+.+.|.|.||||||+-.+.+...
T Consensus 122 ~~QsIiisGeSGaGKTe~~K~il~y 146 (794)
T d2mysa2 122 ENQSILITGESGAGKTVNTKRVIQY 146 (794)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9807999717988789999999999
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=83.27 E-value=0.36 Score=22.34 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=22.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88089299998799972999999997399
Q 006548 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 132 ~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
.+..|+..+|.|++|+|||+|+..+.-..
T Consensus 63 pig~GQr~~Ifg~~g~GKt~l~~~~~~~~ 91 (276)
T d1fx0a3 63 PVGRGQRELIIGDRQTGKTAVATDTILNQ 91 (276)
T ss_dssp CCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred CCCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 54677667600677888579999977654
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.10 E-value=0.4 Score=22.06 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799972999999997
Q 006548 138 MTVIMGPAKSGKSTLLRAIA 157 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~La 157 (641)
-++++|..++|||||...|.
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 79999478998999999999
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.09 E-value=0.19 Score=24.05 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=22.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 880892999987999729999999973
Q 006548 132 YALPGTMTVIMGPAKSGKSTLLRAIAG 158 (641)
Q Consensus 132 ~~~~Ge~~aIiGpsGsGKSTLl~~LaG 158 (641)
.+..|+..+|.|++|+|||+|+.-++.
T Consensus 64 pig~GQr~~If~~~g~GKt~ll~~~~~ 90 (285)
T d2jdia3 64 PIGRGQRELIIGDRQTGKTSIAIDTII 90 (285)
T ss_dssp CCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 766787787656888885899999997
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=82.27 E-value=0.32 Score=22.68 Aligned_cols=20 Identities=40% Similarity=0.400 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999729999999973
Q 006548 139 TVIMGPAKSGKSTLLRAIAG 158 (641)
Q Consensus 139 ~aIiGpsGsGKSTLl~~LaG 158 (641)
++|+|.-++|||||+..|..
T Consensus 27 i~iiGHVD~GKSTL~~~Ll~ 46 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNILF 46 (245)
T ss_dssp EEEEECGGGTHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHH
T ss_conf 99995279899999999999
|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]
Probab=81.59 E-value=0.66 Score=20.71 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8929999879997299999999739
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
..+.+.|.|.||||||+-.+.+...
T Consensus 93 ~~Q~IiisGeSGsGKTe~~k~il~~ 117 (730)
T d1w7ja2 93 RNQSIIVSGESGAGKTVSAKYAMRY 117 (730)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9807999717999879999999999
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=80.96 E-value=0.48 Score=21.56 Aligned_cols=42 Identities=21% Similarity=0.103 Sum_probs=27.6
Q ss_pred CCEEEEECCCCCCCHH---HHHHHHHHHHHHHHC-CCEEEEEEECC
Q ss_conf 9688993999999999---999999999999875-98799999379
Q 006548 266 PHVLFIDEPLYHLDSV---SALLMMVTLKKLAST-GCTLLFTINQS 307 (641)
Q Consensus 266 P~iLllDEPTsgLD~~---s~~~i~~~L~~l~~~-g~tvi~tih~~ 307 (641)
+-|||+||-.+=++.- ....+-+.|+..-.. ...+|.+++..
T Consensus 116 ~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~~ 161 (387)
T d1qvra2 116 EVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLD 161 (387)
T ss_dssp SEEEEECCC-------------------HHHHHTTCCCEEEEECHH
T ss_pred CEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCHH
T ss_conf 6698724088884277787741389999999737885166636899
|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Bay scallop (Aequipecten irradians) [TaxId: 31199]
Probab=80.83 E-value=0.58 Score=21.04 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=19.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8929999879997299999999739
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~ 159 (641)
..+.+.|.|.||||||.-.+.+...
T Consensus 120 ~nQ~IiisGESGaGKTe~~K~il~y 144 (789)
T d1kk8a2 120 ENQSCLITGESGAGKTENTKKVIMY 144 (789)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9947999708999879999999999
|