Citrus Sinensis ID: 006549

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-
MALVSASTERINLCGPTDPSSSRSTSEATSSANVSCAADPPDRNVQFSTSPIPNGDVEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKPEEGGPAYSTVQNDDVHSERVVNTGETSERLCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKRE
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcHHHHcccccccccEEEEEEEEEEccccccccEEEEEccEEEEEccccccEEEEEEEcccEEEEEEcccccccccEEEEEEccccEEccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHcccccHHHHHHHHHHcccccEEEcccccccccccEEEEEEEEEEccccccccEEEEEEEEEEEEcccEEEEEEEEEEccccccccEEEEEEEEEEEcccccccccEEEEEEEEEEEEcccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHcHHHHHHHHHHHHccEEEEccEEEEEHHEccEEEEEEEEHHHEEEEEHHHHHEEcccEEEEEEccccEHHHcHHcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccHHHHHHHHcccccHHHHHHHHHHccccEEEEccccccccccEEEEEEEEEEcccccccccEEEEEEEEEEEcccccEEEEEEEEccccccccEEEEEEEEEEEEccccccccEEEEEEEEEEEccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccccccccccEccccccccccEEEEccccccccccccccEEEccccccccccccccHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
malvsasterinlcgptdpsssrstseatssanvscaadppdrnvqfstspipngdvevqsSVTLRSEEYRqlfrlpseevlVQDFNCAFQESILLQGHMYLFVHFICFYsnifgfetkkiipfyevTAVRraktagifpNAIEIFAAGKKYFFASFLSRDEAFKLITDgwlqhgsgslasaeqqdsssetsspqngpvviekvnccsadpiaksdsiireedlssdsklpanvemtpvemqddnveqdfepvldtdslhpiktsswniensdapkipecyTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHrkcgdkefkctswhrhyefgysrdlsfqhpikvyfgakfgscketqkfrvyrnshlvietsqevhdvpygdyfrvEGLWdvmrddggskegcILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKqknlekpeeggpaystvqnddvhservvntgetserlcnadhrirtlpitdsldasqsvgnllqgnlvDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLnrpqhvhmasppdymgagvgvglgqrsaesipWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKRE
MALVSAsterinlcgptdpsssrstsEATSSANVSCAADPPDRNVqfstspipngdvevQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSssetsspqngpVVIEKVNCCSADPiaksdsiireedlssdsklpaNVEMTPVEMQDDNVEQDFEPVLDTDSLHPiktsswniensdapkiPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVietsqevhdvpyGDYFRVEGLWDVMRDDGGSKEGCILRVYVNvafskktvwkgkivqSTLEECRDVYAMWIGMAHDVLKQKNLEKPEEggpaystvqnddvhseRVVNtgetserlcnadHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLkdieqlhkre
MALVSASTERINLCGPTDPsssrstseatssaNVSCAADPPDRNVQFSTSPIPNGDVEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKPEEGGPAYSTVQNDDVHSERVVNTGETSERLCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKRE
*********************************************************************YRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQH*************************VIEKVNCCSA*********************************************************WNI*****PKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVL*************************************LCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLK*********
********************************************************************EYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQH*******************************************************LPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFK*********FGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMA***************************************************************************AAIASLLRESMT**CS***RQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMA**********************PWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD*EQL****
*********RINLC***********************ADPPDRNVQFSTSPIPNGDVEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGS********************GPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKPEEGGPAYSTVQNDDVHSERVVNTGETSERLCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKRE
*******************************************************DVEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGS**********************************************************************************************NSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQK**************************************DHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMG********QRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLH***
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALVSASTERINLCGPTDPSSSRSTSEATSSANVSCAADPPDRNVQFSTSPIPNGDVEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKPEEGGPAYSTVQNDDVHSERVVNTGETSERLCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKRE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query641 2.2.26 [Sep-21-2011]
Q3KR56723 GRAM domain-containing pr yes no 0.165 0.146 0.495 4e-23
Q8VEF1722 GRAM domain-containing pr yes no 0.165 0.146 0.495 4e-23
Q96CP6724 GRAM domain-containing pr yes no 0.165 0.146 0.495 4e-23
Q8IYS0662 GRAM domain-containing pr no no 0.536 0.519 0.272 4e-23
Q5RC33662 GRAM domain-containing pr no no 0.538 0.521 0.277 4e-23
Q06681 1438 GRAM domain-containing pr yes no 0.558 0.248 0.265 9e-23
O42976764 Uncharacterized membrane yes no 0.199 0.167 0.384 2e-21
Q3KR37738 GRAM domain-containing pr no no 0.536 0.466 0.250 1e-20
Q80TI0738 GRAM domain-containing pr no no 0.165 0.143 0.420 2e-20
Q6PEM6445 GRAM domain-containing pr no no 0.166 0.240 0.412 7e-19
>sp|Q3KR56|GRM1A_RAT GRAM domain-containing protein 1A OS=Rattus norvegicus GN=Gramd1a PE=2 SV=2 Back     alignment and function desciption
 Score =  110 bits (275), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 73/107 (68%), Gaps = 1/107 (0%)

Query: 66  RSEEYRQLF-RLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPF 124
           R+E++R+LF +LP  E L+ D++CA Q  ILLQG +YL  ++ICFYSNIF +ET   I  
Sbjct: 91  RNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQL 150

Query: 125 YEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW 171
            EVT +++ KTA + PNAI+I    +K+FF SF +RD  F LI   W
Sbjct: 151 KEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRLW 197

Rattus norvegicus (taxid: 10116)
>sp|Q8VEF1|GRM1A_MOUSE GRAM domain-containing protein 1A OS=Mus musculus GN=Gramd1a PE=2 SV=2 Back     alignment and function description
>sp|Q96CP6|GRM1A_HUMAN GRAM domain-containing protein 1A OS=Homo sapiens GN=GRAMD1A PE=1 SV=2 Back     alignment and function description
>sp|Q8IYS0|GRM1C_HUMAN GRAM domain-containing protein 1C OS=Homo sapiens GN=GRAMD1C PE=2 SV=2 Back     alignment and function description
>sp|Q5RC33|GRM1C_PONAB GRAM domain-containing protein 1C OS=Pongo abelii GN=GRAMD1C PE=2 SV=1 Back     alignment and function description
>sp|Q06681|YSP2_YEAST GRAM domain-containing protein YSP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YSP2 PE=1 SV=1 Back     alignment and function description
>sp|O42976|YGZ7_SCHPO Uncharacterized membrane protein C20F10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC20F10.07 PE=1 SV=1 Back     alignment and function description
>sp|Q3KR37|GRM1B_HUMAN GRAM domain-containing protein 1B OS=Homo sapiens GN=GRAMD1B PE=1 SV=1 Back     alignment and function description
>sp|Q80TI0|GRM1B_MOUSE GRAM domain-containing protein 1B OS=Mus musculus GN=Gramd1b PE=1 SV=2 Back     alignment and function description
>sp|Q6PEM6|GRAM3_MOUSE GRAM domain-containing protein 3 OS=Mus musculus GN=Gramd3 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query641
255541038644 conserved hypothetical protein [Ricinus 0.984 0.979 0.585 0.0
225453378639 PREDICTED: GRAM domain-containing protei 0.975 0.978 0.584 0.0
255317086618 vascular associated death 1 [Glycine max 0.915 0.949 0.546 0.0
356533291633 PREDICTED: GRAM domain-containing protei 0.901 0.913 0.538 1e-176
449432984648 PREDICTED: GRAM domain-containing protei 0.901 0.891 0.542 1e-174
79334443598 GRAM domain family protein [Arabidopsis 0.915 0.981 0.489 1e-163
297848286598 hypothetical protein ARALYDRAFT_470058 [ 0.912 0.978 0.486 1e-162
147782373638 hypothetical protein VITISV_044292 [Viti 0.892 0.896 0.470 1e-140
414590305623 TPA: hypothetical protein ZEAMMB73_97819 0.837 0.861 0.441 1e-130
356577522 803 PREDICTED: uncharacterized protein LOC10 0.681 0.544 0.517 1e-123
>gi|255541038|ref|XP_002511583.1| conserved hypothetical protein [Ricinus communis] gi|223548763|gb|EEF50252.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/652 (58%), Positives = 488/652 (74%), Gaps = 21/652 (3%)

Query: 1   MALVSASTERINLCGPTDPSSSRSTS----EATSSANVSCAADPPDRNVQFSTSPIPNGD 56
           MA+   + ERI    P + S+S+S S    E  S A +SC AD PDR+    +SP PN D
Sbjct: 1   MAVAPDTAERIGSL-PMESSASKSASVLDYEPPSPATISCDADSPDRSDLSDSSPNPNRD 59

Query: 57  VEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGF 116
            E+Q++  LR+EEYRQLFRLP EE +VQDFNCAFQESILLQGHMYLF H+ICFYSNIFGF
Sbjct: 60  FEIQAA--LRNEEYRQLFRLPPEEAIVQDFNCAFQESILLQGHMYLFSHYICFYSNIFGF 117

Query: 117 ETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGS 176
           ETKK+IPF EV++V+RAKTAGIFPNAIEIFA  +KYFFASFLSRDEAFKLI DGWLQ  +
Sbjct: 118 ETKKVIPFIEVSSVKRAKTAGIFPNAIEIFAGERKYFFASFLSRDEAFKLINDGWLQCVN 177

Query: 177 GSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREED--LSSDSKLPA-- 232
           G+ A  E+Q+S    SS  +  ++IEKVN  S   I + DS  R+ D  LS+D  L A  
Sbjct: 178 GARAITEEQESMISGSSSLDNGIIIEKVN--SFRGINELDSDDRDNDVSLSNDYMLSAPS 235

Query: 233 --NVEMTPVEMQD--DNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETN 288
              +E  P  + +  DNV++D EPV D  +     TS WN E+++ P+I + YT+V ET 
Sbjct: 236 AVEIERAPERLTEIKDNVKKDVEPV-DYITSSSSTTSIWNEEDAEPPEIRKSYTRVGETK 294

Query: 289 FQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYF 348
           F +KVE+F++ FFSDD  NFIESFH++CGDKEF+C+ W    + G++R++SFQHPIK+YF
Sbjct: 295 FPIKVEEFFNFFFSDDASNFIESFHQRCGDKEFRCSLWQPQEKLGHTRNVSFQHPIKIYF 354

Query: 349 GAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILR 408
           GAKFGSC+E QKF+VYRNSHLVIETSQE++DVPYGDYFRVEGLWDV++D   S EGC+L+
Sbjct: 355 GAKFGSCQEKQKFQVYRNSHLVIETSQEINDVPYGDYFRVEGLWDVVKDADESNEGCLLQ 414

Query: 409 VYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKPEEGGPAYSTVQN 468
           +YV+VAFSKKTV+KGKIVQSTLEECR+ YA WI MAH++LKQKNLE  EEG    + +QN
Sbjct: 415 IYVDVAFSKKTVFKGKIVQSTLEECREAYATWINMAHELLKQKNLESREEGP---NVIQN 471

Query: 469 DDVHSERVVNTGETSERLCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRE 528
            +VH+E  + + ETSE+   ++ R R   ++ SLD ++ VG+L+Q N  ++ A+ASLLRE
Sbjct: 472 VEVHTEVALRSVETSEKSSQSNDRGRIAQMSGSLDVNERVGDLVQENFTNATAVASLLRE 531

Query: 529 SMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGL 588
             T+  +F++ QS VSLILV+AF VIFLMQVSILVLLNRPQ V +ASP +Y   G+G  +
Sbjct: 532 YATRFSTFLRSQSQVSLILVVAFVVIFLMQVSILVLLNRPQTVQVASPGEYYMGGMGSSM 591

Query: 589 GQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKR 640
           G RS E++ WLERR+H+LKDEM MVE +LER+ HEH  ++AQLKD++ L  R
Sbjct: 592 GDRSTEAVAWLERRIHHLKDEMFMVEGQLERLRHEHNWIKAQLKDLDGLRNR 643

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225453378|ref|XP_002271102.1| PREDICTED: GRAM domain-containing protein 1A [Vitis vinifera] gi|297734616|emb|CBI16667.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255317086|gb|ACU01863.1| vascular associated death 1 [Glycine max] Back     alignment and taxonomy information
>gi|356533291|ref|XP_003535199.1| PREDICTED: GRAM domain-containing protein 1A-like [Glycine max] Back     alignment and taxonomy information
>gi|449432984|ref|XP_004134278.1| PREDICTED: GRAM domain-containing protein 1A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|79334443|ref|NP_171714.2| GRAM domain family protein [Arabidopsis thaliana] gi|332189265|gb|AEE27386.1| GRAM domain family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297848286|ref|XP_002892024.1| hypothetical protein ARALYDRAFT_470058 [Arabidopsis lyrata subsp. lyrata] gi|297337866|gb|EFH68283.1| hypothetical protein ARALYDRAFT_470058 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|147782373|emb|CAN61799.1| hypothetical protein VITISV_044292 [Vitis vinifera] Back     alignment and taxonomy information
>gi|414590305|tpg|DAA40876.1| TPA: hypothetical protein ZEAMMB73_978197 [Zea mays] Back     alignment and taxonomy information
>gi|356577522|ref|XP_003556873.1| PREDICTED: uncharacterized protein LOC100819859 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query641
TAIR|locus:2205625598 VAD1 "VASCULAR ASSOCIATED DEAT 0.667 0.715 0.582 3.9e-155
UNIPROTKB|Q96CP6724 GRAMD1A "GRAM domain-containin 0.165 0.146 0.495 1.5e-25
MGI|MGI:105490722 Gramd1a "GRAM domain containin 0.165 0.146 0.495 2.1e-24
RGD|1311022723 Gramd1a "GRAM domain containin 0.165 0.146 0.495 3.5e-24
CGD|CAL00017811073 orf19.4423 [Candida albicans ( 0.165 0.098 0.485 1.5e-23
UNIPROTKB|Q59WE71073 CaO19.11901 "Potential GRAM do 0.165 0.098 0.485 1.5e-23
WB|WBGene00022593616 ZC328.3 [Caenorhabditis elegan 0.577 0.600 0.244 1.7e-23
UNIPROTKB|Q3KR37738 GRAMD1B "GRAM domain-containin 0.165 0.143 0.420 3.2e-22
UNIPROTKB|Q8IYS0662 GRAMD1C "GRAM domain-containin 0.165 0.160 0.457 3.9e-22
RGD|1305443733 Gramd1b "GRAM domain containin 0.165 0.144 0.420 1.7e-21
TAIR|locus:2205625 VAD1 "VASCULAR ASSOCIATED DEATH1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1303 (463.7 bits), Expect = 3.9e-155, Sum P(2) = 3.9e-155
 Identities = 258/443 (58%), Positives = 322/443 (72%)

Query:    41 PDRNVQFSTSPIPNGDVEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHM 100
             PDR+   ++SP P+   + QS V  +SEEYRQLFRLP++E+LVQDFNCA QESIL+QGHM
Sbjct:    43 PDRHDPSTSSPSPSRGGDNQSEVISKSEEYRQLFRLPADEILVQDFNCACQESILMQGHM 102

Query:   101 YLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSR 160
             YLF+H+ICFYSNIFG+ETKKIIPF E++ V+RAKTAGIFPNAIEI A GKKYFFASFLSR
Sbjct:   103 YLFIHYICFYSNIFGYETKKIIPFAEISCVKRAKTAGIFPNAIEILAGGKKYFFASFLSR 162

Query:   161 DEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIR 220
             DEAFKLI DGWL++GS     A + +     + PQ    V+++    S D   + D  +R
Sbjct:   163 DEAFKLIHDGWLEYGS-----AVKSEGEILVTEPQVSDGVVKRARS-SMDLANELDIPVR 216

Query:   221 EEDL--SSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIP 278
             +E L  SS S LP  +    V     +V++  EP +D  + +   T +W  E++DAPK+ 
Sbjct:   217 DETLHLSSSSSLPV-ISQNGVP--PSSVQRHAEPDVDVVAAN---TFNWKPEDTDAPKLS 270

Query:   279 ECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDL 338
               +TKVAE  F + VE+F+ LFFSD  V+F+ESFH+ CGDKEF+CTSW  H + G++R++
Sbjct:   271 SDFTKVAEAKFSIPVEEFFRLFFSDGAVSFVESFHKNCGDKEFRCTSWQPHEKLGHTRNV 330

Query:   339 SFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDD 398
             SFQHPIK+YFGAKFG C+E+QKFR+YRNSHLVIETSQE+ DVPY DYF VEG+WD+ RD 
Sbjct:   331 SFQHPIKIYFGAKFGGCQESQKFRMYRNSHLVIETSQEISDVPYADYFTVEGVWDLKRDC 390

Query:   399 GGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKPEE 458
               S EGCIL VYVNVAFSK+TVWKGKIVQSTLEECR+ YA WI MAH++LKQK LE  +E
Sbjct:   391 RDSVEGCILDVYVNVAFSKRTVWKGKIVQSTLEECREAYAHWIRMAHELLKQKKLEN-QE 449

Query:   459 GGPAYSTVQNDDVHSERVVNTGE 481
             G       +      ERV    E
Sbjct:   450 GNKLIEDGEPLAAREERVSECDE 472
GO:0005634 "nucleus" evidence=ISM
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0043069 "negative regulation of programmed cell death" evidence=IMP
GO:0005783 "endoplasmic reticulum" evidence=IDA
UNIPROTKB|Q96CP6 GRAMD1A "GRAM domain-containing protein 1A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:105490 Gramd1a "GRAM domain containing 1A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311022 Gramd1a "GRAM domain containing 1A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
CGD|CAL0001781 orf19.4423 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59WE7 CaO19.11901 "Potential GRAM domain protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
WB|WBGene00022593 ZC328.3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q3KR37 GRAMD1B "GRAM domain-containing protein 1B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IYS0 GRAMD1C "GRAM domain-containing protein 1C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1305443 Gramd1b "GRAM domain containing 1B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query641
cd13220111 cd13220, PH-GRAM_GRAMDC, GRAM domain-containing pr 5e-54
cd13219161 cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-conta 2e-20
cd13351125 cd13351, PH-GRAM1_TCB1D9_TCB1D9B, TBC1 domain fami 3e-17
smart0056860 smart00568, GRAM, domain in glucosyltransferases, 1e-14
pfam0289360 pfam02893, GRAM, GRAM domain 5e-13
cd13349135 cd13349, PH-GRAM1_TBC1D8, TBC1 domain family membe 2e-11
cd13217100 cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and 2e-11
cd13350135 cd13350, PH-GRAM1_TBC1D8B, TBC1 domain family memb 5e-09
cd13354114 cd13354, PH-GRAM2_TCB1D9_TCB1D9B, TBC1 domain fami 3e-07
cd13216117 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 3e-07
cd1057094 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran 2e-05
>gnl|CDD|241374 cd13220, PH-GRAM_GRAMDC, GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain Back     alignment and domain information 
 Score =  179 bits (457), Expect = 5e-54
 Identities = 56/108 (51%), Positives = 74/108 (68%)

Query: 71  RQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAV 130
           +    LP +E L+ D++CA Q  ILLQG +Y+  + ICFYSNIFG+ETK +IPF ++T++
Sbjct: 1   KLFKSLPDDERLIDDYSCALQRDILLQGRLYISENHICFYSNIFGWETKLVIPFKDITSI 60

Query: 131 RRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGS 178
            + KTAG+FPNAI+I    +KYFFASFLSRD  F LIT  W       
Sbjct: 61  EKKKTAGLFPNAIQIETLTEKYFFASFLSRDSTFDLITRVWSNALLEK 108

The GRAMDC proteins are membrane proteins. Nothing is known about its function. Members include: GRAMDC1A, GRAMDC1B, GRAMDC1C, GRAMDC2, GRAMDC3, GRAMDC4, and GRAMDC-like proteins. All of the members, except for GRAMDC4 are included in this hierarchy. Each contains a single PH-GRAM domain at their N-terminus. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 111
>gnl|CDD|241373 cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-containing protein Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain Back     alignment and domain information
>gnl|CDD|241505 cd13351, PH-GRAM1_TCB1D9_TCB1D9B, TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1 Back     alignment and domain information
>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins Back     alignment and domain information
>gnl|CDD|217271 pfam02893, GRAM, GRAM domain Back     alignment and domain information
>gnl|CDD|241503 cd13349, PH-GRAM1_TBC1D8, TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1 Back     alignment and domain information
>gnl|CDD|241371 cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and TCB1D9 family Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1 Back     alignment and domain information
>gnl|CDD|241504 cd13350, PH-GRAM1_TBC1D8B, TBC1 domain family member 8B (TBC1D8B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1 Back     alignment and domain information
>gnl|CDD|241508 cd13354, PH-GRAM2_TCB1D9_TCB1D9B, TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2 Back     alignment and domain information
>gnl|CDD|241370 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2 Back     alignment and domain information
>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 641
KOG1032590 consensus Uncharacterized conserved protein, conta 100.0
PF0289369 GRAM: GRAM domain; InterPro: IPR004182 The GRAM do 99.7
smart0056861 GRAM domain in glucosyltransferases, myotubularins 99.59
KOG4347671 consensus GTPase-activating protein VRP [General f 98.54
KOG1032590 consensus Uncharacterized conserved protein, conta 98.5
PF14844106 PH_BEACH: PH domain associated with Beige/BEACH; P 97.53
PF1447096 bPH_3: Bacterial PH domain 97.46
PF10698159 DUF2505: Protein of unknown function (DUF2505); In 96.66
cd01201108 Neurobeachin Neurobeachin Pleckstrin homology-like 95.01
cd08868208 START_STARD1_3_like Cholesterol-binding START doma 90.27
PF11696642 DUF3292: Protein of unknown function (DUF3292); In 90.13
cd08905209 START_STARD1-like Cholesterol-binding START domain 87.9
cd08904204 START_STARD6-like Lipid-binding START domain of ma 87.32
cd08906209 START_STARD3-like Cholesterol-binding START domain 86.32
cd05018144 CoxG Carbon monoxide dehydrogenase subunit G (CoxG 86.23
PF00407151 Bet_v_1: Pathogenesis-related protein Bet v I fami 84.41
cd08876195 START_1 Uncharacterized subgroup of the steroidoge 83.5
cd08871222 START_STARD10-like Lipid-binding START domain of m 83.27
PF1160589 Vps36_ESCRT-II: Vacuolar protein sorting protein 3 81.11
PF06115118 DUF956: Domain of unknown function (DUF956); Inter 80.35
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=7.9e-47  Score=424.89  Aligned_cols=474  Identities=24%  Similarity=0.345  Sum_probs=349.5

Q ss_pred             hhhhhhhhhhCC--CCCCCeeeeEEEEEEeecceeceEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCC
Q 006549           64 TLRSEEYRQLFR--LPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPN  141 (641)
Q Consensus        64 ~~rn~~F~~lF~--LP~~E~Li~~f~CaL~r~i~l~GrLYIS~~~iCF~S~ifg~~tk~~Ip~~dI~~I~K~kta~i~pn  141 (641)
                      ...+..|+..|.  +|++|.|+.+|+|||+|.|++|||||++++||||||++|||.++++|||.+|+.|+|.++|+++||
T Consensus       103 ~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~tag~fpn  182 (590)
T KOG1032|consen  103 LLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTAGIFPN  182 (590)
T ss_pred             hhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhccCCCc
Confidence            566778888883  999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEecCeEEEEeccCCHHHHHHHHHHHHHhcCCCCCCccccccCCCCCCCCCCCcccccccccCCCCCCCCCCccccc
Q 006549          142 AIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIRE  221 (641)
Q Consensus       142 aI~I~T~~~k~~F~SF~~RD~ay~~I~~~w~~~~~~~~~~~eq~~~~s~~ss~~ng~v~~e~~~ss~~~~~s~~~~~dr~  221 (641)
                      ||+|.|.+.+|+|+||.+||.+|.+|..+-+......+.         ..  .+.++..     ....+.+.   ..+++
T Consensus       183 ~i~i~t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s---------~~--~~~~~l~-----~~~~~~~~---~~~~~  243 (590)
T KOG1032|consen  183 AIEITTGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGS---------PR--ADSDYLS-----SVEPEVND---DQQGN  243 (590)
T ss_pred             ceEEecCCCcceeeecccCccHHHHHHHhhhhcccccCC---------cc--ccchhcc-----cCCCCcCc---ccccc
Confidence            999999999999999999999999885443322110000         00  0000000     00000000   00000


Q ss_pred             ccCCCCCCCCCccCCCCccccCCCccccccCcccCCCCCCCCCCcCCCCCC----CCCCCCcccceeeeeEEecCHHHHH
Q 006549          222 EDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENS----DAPKIPECYTKVAETNFQMKVEDFY  297 (641)
Q Consensus       222 ~~~S~~s~~p~~v~st~~~d~~~n~~~~~~~v~~~d~~~~~~~f~~~~ed~----~~p~~pe~~~~v~e~~fpisv~~~F  297 (641)
                      .    +..      ..+.. .+                   ..++...++.    -...++...-++.+..|++++..||
T Consensus       244 ~----~~~------~~~s~-~~-------------------~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~  293 (590)
T KOG1032|consen  244 V----DNS------QSPSA-LQ-------------------NSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFF  293 (590)
T ss_pred             c----ccC------CCccc-cc-------------------cccCCCccccccccccccccccccccccccccccccccc
Confidence            0    000      00000 00                   0000000000    0012223334778899999999999


Q ss_pred             hhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEEeeeeccCCceeeeeEEEEEEEecCCe-EEEEEeEe
Q 006549          298 SLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSH-LVIETSQE  376 (641)
Q Consensus       298 ~lLFgD~s~~F~~~f~~~~g~~di~~spW~~~~~~~~~R~isY~~pl~~piGPK~t~c~e~Qki~~~~~~~-~VVetst~  376 (641)
                      +++|+|+  .|+..+.+.++..++...+|.....+...|.++|++++..+.|||.+.|..+|++.+++... |.+..++.
T Consensus       294 ~~lf~d~--~~~~~~l~~~~~~~vs~~~~~~~~~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~  371 (590)
T KOG1032|consen  294 SLLFGDN--TFFFFFLEDQDEIQVSPIPWKGPRSGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETL  371 (590)
T ss_pred             eeeccCc--ceeeeccccccccccccccccCCCccceeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheec
Confidence            9999976  47788899999999999999988888899999999999999999999999999998886654 77888999


Q ss_pred             eCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeecccccchhccchHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 006549          377 VHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKP  456 (641)
Q Consensus       377 t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~wv~~a~e~lk~~~~e~~  456 (641)
                      +++||||++|.|.+||+|.|.+.   ..|+|+++..|.|.|++|.+.+++..+.     ..+.+++...++++  +.|+.
T Consensus       372 ~~~vps~~~f~v~~~y~i~~~~~---~~~~l~v~~~V~~~~~sw~~~~~~~~~~-----~~k~lv~~~~~~~~--~~e~~  441 (590)
T KOG1032|consen  372 TPDVPSGDSFYVKTRYLISRAGS---NSCKLKVSTSVEWTKSSWDVPVSEIGSN-----TLKDLVEILEKLLE--NGEEL  441 (590)
T ss_pred             cCCccccceeeeeEEEEEEecCC---cceeecceeEEEeccCchhhcccccccc-----chhhHHHHHHHHHh--ccHHH
Confidence            99999999999999999999853   4999999999999999999999998776     44444555555544  11111


Q ss_pred             CCCCCCccccccccccccceeccccccccccccCCccccccccccccccccccccccccccchhHHHHHHHHHHhhhhcc
Q 006549          457 EEGGPAYSTVQNDDVHSERVVNTGETSERLCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSF  536 (641)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  536 (641)
                      .+..++               +.+.+.+++   +..+..            .|-.+         .-..++|.|.+..+.
T Consensus       442 ~~~~~~---------------~~~~~~~~~---~~~v~~------------~~~~v---------~~~~~~~~~~~~i~~  482 (590)
T KOG1032|consen  442 AKNQEK---------------EDELTYEGS---PWEVEK------------PGGTV---------RQLSYKEVWNKPISP  482 (590)
T ss_pred             HHhhcc---------------cccccccCC---CccccC------------CCcee---------eeecccccccccccc
Confidence            111111               000000111   000110            01000         011244557777888


Q ss_pred             ccccCCceeehhhHHHHHHHHhheeeeeecCCCceeecCCCcccCCCccccCCCCCCcchHHHHHHhhhhhhHHHHHHHH
Q 006549          537 VKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEAR  616 (641)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  616 (641)
                      .+++.+...+.+.+...|++|+..|+.|...|-.-+.+.|.+|-   .+...+..-..+..|+++|++.||+.|.+|.+.
T Consensus       483 ~~~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~---~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~  559 (590)
T KOG1032|consen  483 DKREVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHERYR---EALDETSKVKTTLVWVSFRIEWLKDIKMEARKI  559 (590)
T ss_pred             ccccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehhhh---hhhcccchhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999888888999999999999999999999999994   344566677889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhHHHhhhc
Q 006549          617 LERMWHEHAVLRAQLKDIEQLHKR  640 (641)
Q Consensus       617 ~~~~~~~~~~~~~~~~~~~~~~~~  640 (641)
                      .+.||...+.|+..+..||+|.++
T Consensus       560 k~~~r~~~~~l~~~~~~l~~~~~~  583 (590)
T KOG1032|consen  560 KQILRNDQDLLEVLFSLLEKLSQS  583 (590)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999998753

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins Back     alignment and domain information
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown] Back     alignment and domain information
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C Back     alignment and domain information
>PF14470 bPH_3: Bacterial PH domain Back     alignment and domain information
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria Back     alignment and domain information
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain Back     alignment and domain information
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins Back     alignment and domain information
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function Back     alignment and domain information
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins Back     alignment and domain information
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins Back     alignment and domain information
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins Back     alignment and domain information
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG) Back     alignment and domain information
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms Back     alignment and domain information
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes Back     alignment and domain information
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query641
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 28/201 (13%), Positives = 55/201 (27%), Gaps = 67/201 (33%)

Query: 39  DPPDRNVQFSTSPIPNGDVEVQSSV-TLRSEEYRQLFR----LP-----SEEVL------ 82
           D       +           ++SS+  L   EYR++F      P        +L      
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398

Query: 83  -----VQDFNCAFQESILLQGH---MYLFVH-------------------FICFYSNIFG 115
                V        +  L++       + +                     +  Y+    
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 116 FETKKIIP------FYE-----VTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAF 164
           F++  +IP      FY      +  +   +   +F            +    FL +    
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR---------MVFLDFRFLEQ---- 505

Query: 165 KLITDGWLQHGSGSLASAEQQ 185
           K+  D    + SGS+ +  QQ
Sbjct: 506 KIRHDSTAWNASGSILNTLQQ 526
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query641
d1t77a2110 Lipopolysaccharide-responsive and beige-like ancho 96.3
d1zsqa1125 Myotubularin-related protein 2, N-terminal domain 91.75
d1e09a_159 Major tree pollen allergen {Sweet cherry (Prunus a 86.96
d1em2a_214 Lipid transport domain of Mln64 {Human (Homo sapie 86.19
d1xdfa1157 Plant pathogenesis-related protein PR10 {Yellow lu 84.65
d2caya1130 Vacuolar protein sorting protein 36, VPS36 {Baker' 80.32
d1fm4a_159 Major tree pollen allergen {European white birch ( 80.25
>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: PreBEACH PH-like domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0076  Score=33.96  Aligned_cols=87  Identities=14%  Similarity=0.124  Sum_probs=61.6

Q ss_pred             EEEEEEEEEEE-CCEECEEEEEECCEEEEEECCCC--------------CEEEEEEECCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             54689978964-52011499971554789844678--------------5038997224422111245455368769999
Q 006549           82 LVQDFNCAFQE-SILLQGHMYLFVHFICFYSNIFG--------------FETKKIIPFYEVTAVRRAKTAGIFPNAIEIF  146 (641)
Q Consensus        82 Li~~f~CaL~r-~i~l~GrLYIS~n~iCF~S~ifg--------------~~tk~vIp~~dI~~I~K~k~a~i~pnaI~I~  146 (641)
                      ++-.-.|.+.. ..-..|++.|++++|+|.+.-..              ......+|+.+|..|-+..- .+.++||+|.
T Consensus         3 v~~s~~c~lItp~~~~~G~l~It~~~iyF~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~v~~Rr~-ll~~~alEif   81 (110)
T d1t77a2           3 VSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRY-LLQNTALEIF   81 (110)
T ss_dssp             CSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEE-TTEEEEEEEE
T ss_pred             EEEEEEEEEEEECCEEEEEEEEECCEEEEEECCCCCCHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHHH-CCCCEEEEEE
T ss_conf             899866899875425879999982689999557884210244322344444121776999788884652-2776499999


Q ss_pred             ECCEEEEEECCCCHHHHHHHHHH
Q ss_conf             66908998016787899999999
Q 006549          147 AAGKKYFFASFLSRDEAFKLITD  169 (641)
Q Consensus       147 t~~~k~~F~SF~~RD~a~~~I~~  169 (641)
                      +.+.+-.|-.|.+.+..-+.+..
T Consensus        82 ~~~~~s~~~~F~~~~~~~~v~~~  104 (110)
T d1t77a2          82 MANRVAVMFNFPDPATVKKVVNF  104 (110)
T ss_dssp             ETTSCEEEEECSSHHHHHHHHHH
T ss_pred             ECCCCEEEEEECCHHHHHHHHHH
T ss_conf             73996999995998999999975
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Back     information, alignment and structure
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Back     information, alignment and structure
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Back     information, alignment and structure