Citrus Sinensis ID: 006559

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640
Protein Sequence
MLASRIFFFSFFCLFSLCLSNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPLPSDCSNRTVEPEQPPRSRPRSSRVVTVIVIVIFDAVAILVAVVTVTWCCYKRKRRSLRNGGGGVHKEVVMKRGNRKGDYGGARDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSIDGCANSIMNNISSDSSPSQSENTYNFTNS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccEEEEccccccEEEEEEcccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEccccccccccccccccccccEEEEcccccccccHHHHHcccccEEcccccccEEEEEEccccEEEEEEccccccHHHHHHHHHHHccccccccccccEEEEcccEEEEEEcccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEcccccEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccEEEEEEcccccEEEEEEcccccccccccccccccccEEEEccccccccccccccccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHcHHHHcccccccEEEEEEcccccEEEEEEcccccccHHHHHHHHHHHHHHccccHEEEEEEcccccEEEEEcccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEccccHcHEEEccccccEEccccHHHHccccccccEEEEcccEccccHHHHcccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MLASRIFFFSFFCLFSlclsnspysdisTLLSFKasvtgssdslsswvnstdpcfdswrgvtcnpstHRVIKLVLedldltgpaeVLSRLTQLRLLSLKNNLlsssnlnlsswphlkhLYLShnrftgtfpsgvsslrhlrrvdlshnayegeipmteltrlpnlltlrlednrftgtlysvnsssrsildfnvsnnqlsgqipawmspfggssfagnknlcgrplpsdcsnrtvepeqpprsrprssrvVTVIVIVIFDAVAILVAVVTVTWCCykrkrrslrnggggvhkEVVMKrgnrkgdyggardggdvEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYdylphgslhsllhgsrgpgrmpvdwnKRLKLASDSAKGLAFLHGYnkahlfhghlsssNIVVDQLGNACisdigvhqlfhtpffindaynapelkfnnnnnysqrkfwqrcdvysFGVVLLEILTgkmakgdgeLGIVKWVQMMgqdesawevfDFELIMDKEMEEEMRALLQVALLClaplpkdrpnmsIVHRMIEDIrtkgsidgcANSIMnnissdsspsqsentynftns
Flexible Loop (DISEMBL)
MLASRIFFFSFFCLFSLCLSNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHnayegeipmteltrlpnLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPLPSDCSNRtvepeqpprsrprssrvVTVIVIVIFDAVAILVAVVTVTWccykrkrrslrnggggvhkevvmkrgnrkgdyggardggdVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGAtykvvldggdvvvvkrirerkkkrevdewlrvigglrhsniVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSIDGCANSIMNnissdsspsqsentynftns
Low Complexity Region (SEG)
MLASRIfffsffclfslclsNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPAEVlsrltqlrllslknnllsssnlnlssWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMteltrlpnlltlrleDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPLPSDCSNRTVEPEQpprsrprssrvvtvivivifdavailvavvtvtWCCYKRKRRSLRNGGGGVHKEVVMKRGNRKGDYGGARDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKvvldggdvvvvkrirerkkkrevDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPhgslhsllhgsrgPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRallqvallclaplPKDRPNMSIVHRMIEDIRTKGSIDGCAnsimnnissdsspsqsenTYNFTNS
Disordered region (IsUnstruct)
****RIFFFSFFCLFSLCLSNSPYSDISTLLSFKASVTGS*DSLSSWVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFG**************************************VVTVIVIVIFDAVAILVAVVTVTWCCYKRKRRSLRNGGGGVHKEVV****************GDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN***************KFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSIDGCA*************************
Disordered Region (DISOPRED)
**ASRIFFFSFFCLFSLCLSNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGR*****************************IVIVIFDAVAILVAVVTVTWCCYK****************************************VMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKVVLDGGDVVVVKRIRER****EVDE*LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMI**************************************
Disordered Region (DISEMBL)
MLASRIFFFSFFCLFSLCLSNSPYSDISTLLSFKAS************NSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPLPSDC******************RVVTVIVIVIFDAVAILVAVVTVTWCCYKRKRRSLRNGGGGVHKEVVMKRGNRKGDYGGARDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSIDGCANSIMNNI******************
Disordered Region (DISPRO)
MLASRIFFFSFFCLFSLCLSNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPLPSDCSN***************SRVVTVIVIVIFDAVAILVAVVTVTWCCYKRKR********************************DVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR**********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLASRIFFFSFFCLFSLCLSNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPLPSDCSNRTVEPEQPPRSRPRSSRVVTVIVIVIFDAVAILVAVVTVTWCCYKRKRRSLRNGGGGVHKEVVMKRGNRKGDYGGARDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSIDGCANSIMNNISSDSSPSQSENTYNFTNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	640	2.2.26 [Sep-21-2011]
Q9M9C5	670	Probable leucine-rich rep	yes	no	0.929	0.888	0.397	1e-107
O48788	658	Probable inactive recepto	no	no	0.865	0.841	0.384	6e-97
Q9LVM0	654	Probable inactive recepto	no	no	0.937	0.917	0.372	8e-97
Q9SUQ3	638	Probable inactive recepto	no	no	0.879	0.882	0.364	2e-91
Q9C9Y8	640	Probable inactive recepto	no	no	0.917	0.917	0.360	1e-90
Q9FHK7	640	Probable leucine-rich rep	no	no	0.935	0.935	0.363	4e-90
Q9LP77	655	Probable inactive recepto	no	no	0.870	0.850	0.361	1e-83
Q84MA9	652	Inactive leucine-rich rep	no	no	0.929	0.912	0.359	4e-83
Q9SH71	587	Putative inactive recepto	no	no	0.878	0.957	0.342	1e-82
Q9FK10	601	Probable inactive recepto	no	no	0.926	0.986	0.335	3e-79

>sp|Q9M9C5|Y1680_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g68400 OS=Arabidopsis thaliana GN=At1g68400 PE=2 SV=1

 Score =  390 bits (1002), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 263/661 (39%), Positives = 386/661 (58%), Gaps = 66/661 (9%)

Query: 25  SDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPA 84
           +D  TLL+FK +   S+  L+SW  +T+PC   W GV+CN   +RV +LVLED++LTG  
Sbjct: 30  TDSETLLNFKLTAD-STGKLNSWNTTTNPC--QWTGVSCN--RNRVTRLVLEDINLTGSI 84

Query: 85  EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVD 144
             L+ LT LR+LSLK+N LS    NLS+   LK L+LS+N+F+G FP+ ++SL  L R+D
Sbjct: 85  SSLTSLTSLRVLSLKHNNLSGPIPNLSNLTALKLLFLSNNQFSGNFPTSITSLTRLYRLD 144

Query: 145 LSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP 204
           LS N + G+IP        +LLTLRLE NRF+G + ++N S   + DFNVS N  +GQIP
Sbjct: 145 LSFNNFSGQIPPDLTDLT-HLLTLRLESNRFSGQIPNINLS--DLQDFNVSGNNFNGQIP 201

Query: 205 AWMSPFGGSSFAGNKNLCGRPLPSDCSNRTVEPEQP---------PRSRPR--------- 246
             +S F  S F  N +LCG PL   C+  + +P +P         P ++P          
Sbjct: 202 NSLSQFPESVFTQNPSLCGAPL-LKCTKLSSDPTKPGRPDEAKASPLNKPETVPSSPTSI 260

Query: 247 --------SSRVVTV--IVIVIFDAVAILVAVVTVTWCCYKRKRRSLRNGGGGVHKEVVM 296
                   +SR+ T+  I I++ D + +    + + +C +++   + +     +  E ++
Sbjct: 261 HGGDKSNNTSRISTISLIAIILGDFIILSFVSLLLYYCFWRQYAVNKKKHSKILEGEKIV 320

Query: 297 KRGN-----RKGDYGGARDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYK 351
              N      + +    +  GD  +MV FEG  +    + DLL++SAE+LGKG  G  YK
Sbjct: 321 YSSNPYPTSTQNNNNQNQQVGDKGKMVFFEGTRR--FELEDLLRASAEMLGKGGFGTAYK 378

Query: 352 VVLDGGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY 408
            VL+ G+ V VKR+++      K+E ++ + V+G LRH+N+VS++AY   ++E  LVYDY
Sbjct: 379 AVLEDGNEVAVKRLKDAVTVAGKKEFEQQMEVLGRLRHTNLVSLKAYYFAREEKLLVYDY 438

Query: 409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA-HLFHGHLSSSNIV 467
           +P+GSL  LLHG+RGPGR P+DW  RLK+A+ +A+GLAF+HG  K   L HG + S+N++
Sbjct: 439 MPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGLAFIHGSCKTLKLTHGDIKSTNVL 498

Query: 468 VDQLGNACISDIGVHQLFHTPFFI--NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVV 525
           +D+ GNA +SD G+  +F     +  ++ Y APEL          RK  Q+ DVYSFGV+
Sbjct: 499 LDRSGNARVSDFGL-SIFAPSQTVAKSNGYRAPEL-------IDGRKHTQKSDVYSFGVL 550

Query: 526 LLEILTGK------MAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQ 579
           LLEILTGK           G + + +WVQ + ++E   EVFD EL+  K++EEEM  LLQ
Sbjct: 551 LLEILTGKCPNMVETGHSGGAVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQ 610

Query: 580 VALLCLAPLPKDRPNMSIVHRMIEDIRTKGSIDGCANSIMNNISSDSSPSQSENTYNFTN 639
           +A+ C A     RP M  V ++IEDIR  GS     N  +N  S+  SP  SE+T   T 
Sbjct: 611 IAMACTAVAADHRPKMGHVVKLIEDIRGGGSEASPCNDGIN--SAVDSPCLSEDTCGGTT 668

Query: 640 S 640
           S
Sbjct: 669 S 669

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|O48788|Y2267_ARATH Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1

 Score =  355 bits (911), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 232/603 (38%), Positives = 342/603 (56%), Gaps = 49/603 (8%)

Query: 47  WVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTG--PAEVLSRLTQLRLLSLKNNLLS 104
           W  S   C  +W GV CN +   +  L L    L G  P+  L RLT+LR+LSL++N LS
Sbjct: 47  WNESDSAC--NWVGVECNSNQSSIHSLRLPGTGLVGQIPSGSLGRLTELRVLSLRSNRLS 104

Query: 105 SS-NLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLP 163
                + S+  HL+ LYL HN F+G FP+  + L +L R+D+S N + G IP + +  L 
Sbjct: 105 GQIPSDFSNLTHLRSLYLQHNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPFS-VNNLT 163

Query: 164 NLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCG 223
           +L  L L +N F+G L S+   S  ++DFNVSNN L+G IP+ +S F   SF GN +LCG
Sbjct: 164 HLTGLFLGNNGFSGNLPSI---SLGLVDFNVSNNNLNGSIPSSLSRFSAESFTGNVDLCG 220

Query: 224 RPLPSDCSNRTVEPEQPPRSRPRSSRVV--------TVIVIVIFDAVAILVAVVTVTWCC 275
            PL   C +  V P   P     S+R+           IV +I  +  + + ++ +    
Sbjct: 221 GPL-KPCKSFFVSPSPSPSLINPSNRLSSKKSKLSKAAIVAIIVASALVALLLLALLLFL 279

Query: 276 YKRKRRSLRNG-------GGGVHKEVVMKRG--NRKGDYGGARDG--GDVE--EMVMFEG 322
             RKRR             G   + V +  G  + K +  G   G  G+ E  ++V  EG
Sbjct: 280 CLRKRRGSNEARTKQPKPAGVATRNVDLPPGASSSKEEVTGTSSGMGGETERNKLVFTEG 339

Query: 323 CNKGFRNVGDLLKSSAELLGKGCVGATYKVVLDGGDVVVVKRIRE-RKKKREVDEWLRVI 381
               F ++ DLL++SAE+LGKG VG +YK VL+ G  VVVKR+++    K+E +  + V+
Sbjct: 340 GVYSF-DLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVMASKKEFETQMEVV 398

Query: 382 GGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDS 441
           G ++H N++ +RAY   KDE  LV+D++P GSL +LLHGSRG GR P+DW+ R+++A  +
Sbjct: 399 GKIKHPNVIPLRAYYYSKDEKLLVFDFMPTGSLSALLHGSRGSGRTPLDWDNRMRIAITA 458

Query: 442 AKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFIN--DAYNAPE 499
           A+GLA LH    A L HG++ +SNI++    + C+SD G++QLF      N    Y+APE
Sbjct: 459 ARGLAHLH--VSAKLVHGNIKASNILLHPNQDTCVSDYGLNQLFSNSSPPNRLAGYHAPE 516

Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK----MAKGDGELGIVKWVQMMGQDES 555
           +          RK   + DVYSFGV+LLE+LTGK     + G+  + + +WV  + ++E 
Sbjct: 517 V-------LETRKVTFKSDVYSFGVLLLELLTGKSPNQASLGEEGIDLPRWVLSVVREEW 569

Query: 556 AWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI-RTKGSIDGC 614
             EVFD EL+    +EEEM  LLQ+A+ C++ +P  RP M  V RMIED+ R++ + DG 
Sbjct: 570 TAEVFDVELMRYHNIEEEMVQLLQIAMACVSTVPDQRPVMQEVLRMIEDVNRSETTDDGL 629

Query: 615 ANS 617
             S
Sbjct: 630 RQS 632

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVM0|Y5830_ARATH Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1

 Score =  355 bits (910), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 242/649 (37%), Positives = 353/649 (54%), Gaps = 49/649 (7%)

Query: 2   LASRIFFFSFFCLFSLCLSNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGV 61
           L S +F  + FC +++   NS   D   LL+F ASV        +W NST+    SW GV
Sbjct: 27  LVSFLFVTTTFCSYAIADLNS---DRQALLAFAASVPHLRRL--NW-NSTNHICKSWVGV 80

Query: 62  TCNPSTHRVIKLVLEDLDLTGP--AEVLSRLTQLRLLSLKNNLLSSSNL--NLSSWPHLK 117
           TC      V  L L  + L GP     L +L  LR+LSL++NLLS  NL  ++ S P L 
Sbjct: 81  TCTSDGTSVHALRLPGIGLLGPIPPNTLGKLESLRILSLRSNLLSG-NLPPDIHSLPSLD 139

Query: 118 HLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTG 177
           ++YL HN F+G  PS VS  R L  +DLS N++ G+IP T    L  L  L L++N+ +G
Sbjct: 140 YIYLQHNNFSGEVPSFVS--RQLNILDLSFNSFTGKIPAT-FQNLKQLTGLSLQNNKLSG 196

Query: 178 TLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPL--------PSD 229
            + ++++ S  +   N+SNN L+G IP+ +  F  SSF+GN  LCG PL        P  
Sbjct: 197 PVPNLDTVS--LRRLNLSNNHLNGSIPSALGGFPSSSFSGNTLLCGLPLQPCATSSPPPS 254

Query: 230 CSNRTVEPEQPPRSRPRSSR----VVTVIVIVIFDAVAILVAVVTVTWCCYKRKRRSLRN 285
            +     P  PP      S+    V T+I I    A  +L+  V +  CC K+K +    
Sbjct: 255 LTPHISTPPLPPFPHKEGSKRKLHVSTIIPIAAGGAALLLLITVIILCCCIKKKDK---R 311

Query: 286 GGGGVHKEVVMKRGNRKGDYGGARDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGC 345
               V  + + ++   K ++G      +  ++V F GC+  F ++ DLL++SAE+LGKG 
Sbjct: 312 EDSIVKVKTLTEKA--KQEFGSGVQEPEKNKLVFFNGCSYNF-DLEDLLRASAEVLGKGS 368

Query: 346 VGATYKVVLDGGDVVVVKRIRERKK-KREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELF 403
            G  YK VL+    VVVKR++E    KRE ++ + +I  +  H ++V +RAY   KDE  
Sbjct: 369 YGTAYKAVLEESTTVVVKRLKEVAAGKREFEQQMEIISRVGNHPSVVPLRAYYYSKDEKL 428

Query: 404 LVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSS 463
           +V DY P G+L SLLHG+RG  + P+DW+ R+K+   +AKG+A LH        HG++ S
Sbjct: 429 MVCDYYPAGNLSSLLHGNRGSEKTPLDWDSRVKITLSAAKGIAHLHAAGGPKFSHGNIKS 488

Query: 464 SNIVVDQLGNACISDIGVHQLFHTPF--FINDAYNAPELKFNNNNNYSQRKFWQRCDVYS 521
           SN+++ Q  +ACISD G+  L   P        Y APE+          RK   + DVYS
Sbjct: 489 SNVIMKQESDACISDFGLTPLMAVPIAPMRGAGYRAPEV-------METRKHTHKSDVYS 541

Query: 522 FGVVLLEILTGK----MAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRAL 577
           FGV++LE+LTGK        D  + + +WVQ + ++E   EVFD EL+  + +EEEM  +
Sbjct: 542 FGVLILEMLTGKSPVQSPSRDDMVDLPRWVQSVVREEWTSEVFDIELMRFQNIEEEMVQM 601

Query: 578 LQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSIDGCANSIMNNISSDS 626
           LQ+A+ C+A +P+ RP M  V RMIE+IR   S     +S  N+   DS
Sbjct: 602 LQIAMACVAQVPEVRPTMDDVVRMIEEIRVSDSETTRPSSDDNSKPKDS 650

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUQ3|Y4374_ARATH Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740 PE=1 SV=1

 Score =  337 bits (864), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 220/603 (36%), Positives = 331/603 (54%), Gaps = 40/603 (6%)

Query: 23  PYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTG 82
           P  D   LL F  ++   + SL+ W N T    + W GVTCN    R+I + L  + L G
Sbjct: 26  PLEDKRALLEF-LTIMQPTRSLN-W-NETSQVCNIWTGVTCNQDGSRIIAVRLPGVGLNG 82

Query: 83  --PAEVLSRLTQLRLLSLKNNLLSSS-NLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRH 139
             P   +SRL+ LR+LSL++NL+S     +      L  LYL  N  +G  P   S  ++
Sbjct: 83  QIPPNTISRLSALRVLSLRSNLISGEFPKDFVELKDLAFLYLQDNNLSGPLPLDFSVWKN 142

Query: 140 LRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNN-Q 198
           L  V+LS+N + G IP + L+RL  + +L L +N  +G +  ++  S S+   ++SNN  
Sbjct: 143 LTSVNLSNNGFNGTIP-SSLSRLKRIQSLNLANNTLSGDIPDLSVLS-SLQHIDLSNNYD 200

Query: 199 LSGQIPAWMSPFGGSSFAG--------NKNLCGRPLPSDCSNRTVEPEQPPRSRPRSSRV 250
           L+G IP W+  F  SS+ G        N  L   P PS+ ++     ++P ++R      
Sbjct: 201 LAGPIPDWLRRFPFSSYTGIDIIPPGGNYTLVTPPPPSEQTH-----QKPSKARFLGLSE 255

Query: 251 VTVIVIVIFDAVAILVAVVTVTWCCYKRKRRSLRNGGGGVHKEVVMKRGNRKGDYGGARD 310
              ++IVI  ++ ++ A+  V   CY R  R LR G G +    + K+G    +   +R 
Sbjct: 256 TVFLLIVIAVSIVVITALAFVLTVCYVR--RKLRRGDGVISDNKLQKKGGMSPEKFVSRM 313

Query: 311 GGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKVVLDGGDVVVVKRIRE-RK 369
                 +  FEGCN  F ++ DLL++SAE+LGKG  G TYK VL+    V VKR+++   
Sbjct: 314 EDVNNRLSFFEGCNYSF-DLEDLLRASAEVLGKGTFGTTYKAVLEDATSVAVKRLKDVAA 372

Query: 370 KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPV 429
            KR+ ++ + +IGG++H N+V ++AY   KDE  +VYDY   GS+ SLLHG+RG  R+P+
Sbjct: 373 GKRDFEQQMEIIGGIKHENVVELKAYYYSKDEKLMVYDYFSRGSVASLLHGNRGENRIPL 432

Query: 430 DWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL---FH 486
           DW  R+K+A  +AKG+A +H  N   L HG++ SSNI ++   N C+SD+G+  +     
Sbjct: 433 DWETRMKIAIGAAKGIARIHKENNGKLVHGNIKSSNIFLNSESNGCVSDLGLTAVMSPLA 492

Query: 487 TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK----MAKGDGELG 542
            P      Y APE+          RK  Q  DVYSFGVVLLE+LTGK       GD  + 
Sbjct: 493 PPISRQAGYRAPEVT-------DTRKSSQLSDVYSFGVVLLELLTGKSPIHTTAGDEIIH 545

Query: 543 IVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMI 602
           +V+WV  + ++E   EVFD EL+    +EEEM  +LQ+A+ C+      RP MS + R+I
Sbjct: 546 LVRWVHSVVREEWTAEVFDIELLRYTNIEEEMVEMLQIAMSCVVKAADQRPKMSDLVRLI 605

Query: 603 EDI 605
           E++
Sbjct: 606 ENV 608

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9Y8|Y3868_ARATH Probable inactive receptor kinase At3g08680 OS=Arabidopsis thaliana GN=At3g08680 PE=1 SV=1

 Score =  334 bits (857), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 231/641 (36%), Positives = 341/641 (53%), Gaps = 54/641 (8%)

Query: 7   FFFSFFCLF-SLCLSNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNP 65
           F F     F S CLS    SD   LL F AS+   S  L+ W NST P   SW G+TC+ 
Sbjct: 8   FLFLLVTTFVSRCLSADIESDKQALLEF-ASLVPHSRKLN-W-NSTIPICASWTGITCSK 64

Query: 66  STHRVIKLVLEDLDLTGP--AEVLSRLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLYLS 122
           +  RV  L L    L GP   +   +L  LR++SL++N L  +  + + S P ++ LY  
Sbjct: 65  NNARVTALRLPGSGLYGPLPEKTFEKLDALRIISLRSNHLQGNIPSVILSLPFIRSLYFH 124

Query: 123 HNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSV 182
            N F+GT P  +S    L  +DLS N+  G IP T L  L  L  L L++N  +G + ++
Sbjct: 125 ENNFSGTIPPVLS--HRLVNLDLSANSLSGNIP-TSLQNLTQLTDLSLQNNSLSGPIPNL 181

Query: 183 NSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPLPSDCSNRTVEPEQPPR 242
               + +   N+S N L+G +P+ +  F  SSF GN  LCG PL + C   T  P   P 
Sbjct: 182 PPRLKYL---NLSFNNLNGSVPSSVKSFPASSFQGNSLLCGAPL-TPCPENTTAPSPSPT 237

Query: 243 S-----------RPRSSRVVT---VIVIVIFDAVAILVAVVTVTWCCYKRKRRSLRNGG- 287
           +           R  + +V++   ++ I +  +V + + +  +T CC K+     R+GG 
Sbjct: 238 TPTEGPGTTNIGRGTAKKVLSTGAIVGIAVGGSVLLFIILAIITLCCAKK-----RDGGQ 292

Query: 288 --GGVHKEVVMKRGNRKGDYGGARDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGC 345
               V K    +  N+  ++G      +  ++V FEG +  F ++ DLL++SAE+LGKG 
Sbjct: 293 DSTAVPKAKPGRSDNKAEEFGSGVQEAEKNKLVFFEGSSYNF-DLEDLLRASAEVLGKGS 351

Query: 346 VGATYKVVLDGGDVVVVKRIRE-RKKKREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELF 403
            G TYK +L+ G  VVVKR++E    KRE ++ +  +G +  H N+  +RAY   KDE  
Sbjct: 352 YGTTYKAILEEGTTVVVKRLKEVAAGKREFEQQMEAVGRISPHVNVAPLRAYYFSKDEKL 411

Query: 404 LVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSS 463
           LVYDY   G+   LLHG+   GR  +DW  RL++  ++A+G++ +H  + A L HG++ S
Sbjct: 412 LVYDYYQGGNFSMLLHGNNEGGRAALDWETRLRICLEAARGISHIHSASGAKLLHGNIKS 471

Query: 464 SNIVVDQLGNACISDIGVHQLFHTPFFIND---AYNAPELKFNNNNNYSQRKFWQRCDVY 520
            N+++ Q  + C+SD G+  L      I      Y APE           RK  Q+ DVY
Sbjct: 472 PNVLLTQELHVCVSDFGIAPLMSHHTLIPSRSLGYRAPEA-------IETRKHTQKSDVY 524

Query: 521 SFGVVLLEILTGKMA-KGDGELGIV---KWVQMMGQDESAWEVFDFELIMDKE-MEEEMR 575
           SFGV+LLE+LTGK A K  G   +V   KWVQ + ++E   EVFD ELI  +  +EEEM 
Sbjct: 525 SFGVLLLEMLTGKAAGKTTGHEEVVDLPKWVQSVVREEWTGEVFDVELIKQQHNVEEEMV 584

Query: 576 ALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSIDGCAN 616
            +LQ+A+ C++  P  RP+M  V  M+E+IR  GS  G  N
Sbjct: 585 QMLQIAMACVSKHPDSRPSMEEVVNMMEEIRPSGSGPGSGN 625

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHK7|Y5516_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g05160 OS=Arabidopsis thaliana GN=At5g05160 PE=1 SV=1

 Score =  333 bits (853), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 238/655 (36%), Positives = 349/655 (53%), Gaps = 56/655 (8%)

Query: 7   FFFSFFCLFSLCLSNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPS 66
           FFF      ++ +S    SD   LL+F ASV        +W  +   C  SW G+TC+ S
Sbjct: 13  FFFLLLAATAVLVSADLASDEQALLNFAASVPHPPKL--NWNKNLSLC-SSWIGITCDES 69

Query: 67  --THRVIKLVLEDLDLTG--PAEVLSRLTQLRLLSLKNN-LLSSSNLNLSSWPHLKHLYL 121
             T RV+ + L  + L G  P   L +L  L++LSL++N L  +   ++ S P L++LYL
Sbjct: 70  NPTSRVVAVRLPGVGLYGSIPPATLGKLDALKVLSLRSNSLFGTLPSDILSLPSLEYLYL 129

Query: 122 SHNRFTG--TFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTL 179
            HN F+G  T  S  S  + L  +DLS+N+  G IP + L  L  +  L L++N F G +
Sbjct: 130 QHNNFSGELTTNSLPSISKQLVVLDLSYNSLSGNIP-SGLRNLSQITVLYLQNNSFDGPI 188

Query: 180 YSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPLPSDCSNRTVEPEQ 239
            S++  S  ++  N+S N LSG IP  +      SF GN  LCG PL + CS   + P  
Sbjct: 189 DSLDLPSVKVV--NLSYNNLSGPIPEHLKKSPEYSFIGNSLLCGPPL-NACSGGAISPSS 245

Query: 240 P-PRS--------RPRSSRVVTVIVIVIFDAVAILVAVVTVTWCCYKRKRRSLRNGGGGV 290
             PR         R R S+   +I IV+  +VA+L   +    C  K+ ++    GG GV
Sbjct: 246 NLPRPLTENLHPVRRRQSKAY-IIAIVVGCSVAVLFLGIVFLVCLVKKTKKE-EGGGEGV 303

Query: 291 HKEVVMKRGNRKGDYGGARDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATY 350
             ++      +  D+G      +  ++  FE CN  F ++ DLLK+SAE+LGKG  G  Y
Sbjct: 304 RTQMGGVNSKKPQDFGSGVQDPEKNKLFFFERCNHNF-DLEDLLKASAEVLGKGSFGTAY 362

Query: 351 KVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDY 408
           K VL+    VVVKR+RE    K+E ++ + ++G + +HSN V + AY   KDE  LVY Y
Sbjct: 363 KAVLEDTTAVVVKRLREVVASKKEFEQQMEIVGKINQHSNFVPLLAYYYSKDEKLLVYKY 422

Query: 409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV 468
           +  GSL  ++HG+RG     VDW  R+K+A+ ++K +++LH        HG + SSNI++
Sbjct: 423 MTKGSLFGIMHGNRG--DRGVDWETRMKIATGTSKAISYLHSLK---FVHGDIKSSNILL 477

Query: 469 DQLGNACISDIGVHQLF----HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGV 524
            +    C+SD  +  LF    HTP  I   YNAPE+          R+  QR DVYSFGV
Sbjct: 478 TEDLEPCLSDTSLVTLFNLPTHTPRTI--GYNAPEV-------IETRRVSQRSDVYSFGV 528

Query: 525 VLLEILTGKMAKGDGEL-------GIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRAL 577
           V+LE+LTGK       L        + +WV+ + ++E   EVFD EL+  + +EEEM  +
Sbjct: 529 VILEMLTGKTPLTQPGLEDERVVIDLPRWVRSVVREEWTAEVFDVELLKFQNIEEEMVQM 588

Query: 578 LQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSIDGCANSIMNNISSDSSPSQSE 632
           LQ+AL C+A  P+ RP M  V RMIED+R    +D       N  SS+++ + SE
Sbjct: 589 LQLALACVARNPESRPKMEEVARMIEDVR---RLDQSQQLQQNRTSSEATSNVSE 640

Probable leucine-rich repeat receptor-like protein kinase.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LP77|Y1848_ARATH Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana GN=RKL1 PE=1 SV=1

 Score =  311 bits (796), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 229/634 (36%), Positives = 340/634 (53%), Gaps = 77/634 (12%)

Query: 25  SDISTLLSFKASVTGSSDSLSSW-VNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTG- 82
           +D + LLS +++V G +     W +  T PC  +W GV C   ++RV  L L  + L+G 
Sbjct: 35  ADRTALLSLRSAVGGRT---FRWNIKQTSPC--NWAGVKCE--SNRVTALRLPGVALSGD 87

Query: 83  -PAEVLSRLTQLRLLSLKNNLLSSS-NLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHL 140
            P  +   LTQLR LSL+ N LS S   +LS+  +L+HLYL  NRF+G  P  + SL HL
Sbjct: 88  IPEGIFGNLTQLRTLSLRLNALSGSLPKDLSTSSNLRHLYLQGNRFSGEIPEVLFSLSHL 147

Query: 141 RRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS 200
            R++L+ N++ GEI  +  T L  L TL LE+N+ +G++  ++     ++ FNVSNN L+
Sbjct: 148 VRLNLASNSFTGEIS-SGFTNLTKLKTLFLENNQLSGSIPDLD---LPLVQFNVSNNSLN 203

Query: 201 GQIPAWMSPFGGSSFAGNKNLCGRPL------------PSDCSNRT---VE-PEQPPRSR 244
           G IP  +  F   SF    +LCG+PL            P+   NRT   VE  E+  +  
Sbjct: 204 GSIPKNLQRFESDSFL-QTSLCGKPLKLCPDEETVPSQPTSGGNRTPPSVEGSEEKKKKN 262

Query: 245 PRSSRVVTVIVIVIFDAVAILVAVVTVTWCCYKRKRRSLRNGGGGVH---------KEVV 295
             S   +  IVI      A++V ++ V  C  K  +RS       +          KE V
Sbjct: 263 KLSGGAIAGIVIGCVVGFALIVLILMV-LCRKKSNKRSRAVDISTIKQQEPEIPGDKEAV 321

Query: 296 --------------MKRGNRKGDYGGARDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELL 341
                            GN K   G   +G   +++V F    K F ++ DLL++SAE+L
Sbjct: 322 DNGNVYSVSAAAAAAMTGNGKASEG---NGPATKKLVFFGNATKVF-DLEDLLRASAEVL 377

Query: 342 GKGCVGATYKVVLDGGDVVVVKRIRE-RKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKD 400
           GKG  G  YK VLD   VV VKR+++     +E  E + ++G + H N+V +RAY   +D
Sbjct: 378 GKGTFGTAYKAVLDAVTVVAVKRLKDVMMADKEFKEKIELVGAMDHENLVPLRAYYFSRD 437

Query: 401 ELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGH 460
           E  LVYD++P GSL +LLHG+RG GR P++W+ R ++A  +A+GL +LH    +   HG+
Sbjct: 438 EKLLVYDFMPMGSLSALLHGNRGAGRSPLNWDVRSRIAIGAARGLDYLHSQGTST-SHGN 496

Query: 461 LSSSNIVVDQLGNACISDIGVHQLFHTPFFIND---AYNAPELKFNNNNNYSQRKFWQRC 517
           + SSNI++ +  +A +SD G+ QL  +     +    Y APE+          ++  Q+ 
Sbjct: 497 IKSSNILLTKSHDAKVSDFGLAQLVGSSATNPNRATGYRAPEVT-------DPKRVSQKG 549

Query: 518 DVYSFGVVLLEILTGKMAKGD--GELGI--VKWVQMMGQDESAWEVFDFELIMDKEMEEE 573
           DVYSFGVVLLE++TGK        E G+   +WV+ + +DE   EVFD EL+     EEE
Sbjct: 550 DVYSFGVVLLELITGKAPSNSVMNEEGVDLPRWVKSVARDEWRREVFDSELLSLATDEEE 609

Query: 574 MRA-LLQVALLCLAPLPKDRPNMSIVHRMIEDIR 606
           M A ++Q+ L C +  P  RP MS V R +E++R
Sbjct: 610 MMAEMVQLGLECTSQHPDQRPEMSEVVRKMENLR 643

Arabidopsis thaliana (taxid: 3702)

>sp|Q84MA9|Y1063_ARATH Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 OS=Arabidopsis thaliana GN=At1g60630 PE=2 SV=1

 Score =  309 bits (792), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 242/674 (35%), Positives = 357/674 (52%), Gaps = 79/674 (11%)

Query: 3   ASRIFFFSFFCLFSLCLSNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVT 62
           +S   FF  F  F   +S    SD+  LLS K+S+  S+     W   TDPC  +W GV 
Sbjct: 4   SSSCMFFLVFAFF--LISPVRSSDVEALLSLKSSIDPSNSI--PW-RGTDPC--NWEGVK 56

Query: 63  -CNPSTHRVIKLVLEDLDLTGP--AEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHL 119
            C     RV KLVLE+L+L+G    + L++L QLR+LS K N LS S  NLS   +LK L
Sbjct: 57  KCMKG--RVSKLVLENLNLSGSLNGKSLNQLDQLRVLSFKGNSLSGSIPNLSGLVNLKSL 114

Query: 120 YLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTL 179
           YL+ N F+G FP  ++SL  L+ V LS N + G+IP + L RL  L T  ++DN F+G++
Sbjct: 115 YLNDNNFSGEFPESLTSLHRLKTVVLSRNRFSGKIP-SSLLRLSRLYTFYVQDNLFSGSI 173

Query: 180 YSVNSSSRSILDFNVSNNQLSGQIP--AWMSPFGGSSFAGNKNLCGRPLPSDCSNRTVEP 237
             +N ++     FNVSNNQLSG IP    ++ F  SSF  N  LCG  + + C++ T   
Sbjct: 174 PPLNQATLRF--FNVSNNQLSGHIPPTQALNRFNESSFTDNIALCGDQIQNSCNDTTGIT 231

Query: 238 EQP------PRSRPRS-SRVVTVIVIVIFDAVAILVAVVTVTWCCYKRK--------RRS 282
             P      P ++ RS ++++ +I   I   + IL+    +    ++RK        RRS
Sbjct: 232 STPSAKPAIPVAKTRSRTKLIGIISGSICGGILILLLTFLLICLLWRRKRSKSKREERRS 291

Query: 283 LRNGGGGVHKEVVMKRG-----NRKGDYGGARDGGDVEEMVMFEGCNKGFR-NVGDLLKS 336
            R       K    + G     N++  +    + G V  +V         R  + DLLK+
Sbjct: 292 KRVAESKEAKTAETEEGTSDQKNKRFSWEKESEEGSVGTLVFLGRDITVVRYTMDDLLKA 351

Query: 337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIR 393
           SAE LG+G +G+TYK V++ G ++ VKR+++    R +DE+ R   ++G L+H N+V +R
Sbjct: 352 SAETLGRGTLGSTYKAVMESGFIITVKRLKDAGFPR-MDEFKRHIEILGRLKHPNLVPLR 410

Query: 394 AYCNGKDELFLVYDYLPHGSLHSLLHGSR--GPGRMPVDWNKRLKLASDSAKGLAFLHGY 451
           AY   K+E  LVYDY P+GSL SL+HGS+  G G+ P+ W   LK+A D A GL ++H  
Sbjct: 411 AYFQAKEECLLVYDYFPNGSLFSLIHGSKVSGSGK-PLHWTSCLKIAEDLAMGLVYIH-- 467

Query: 452 NKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA------YNAPELKFNNN 505
               L HG+L SSN+++     +C++D G+  L H P+ I D       Y APE +    
Sbjct: 468 QNPGLTHGNLKSSNVLLGPDFESCLTDYGLSDL-HDPYSIEDTSAASLFYKAPECR---- 522

Query: 506 NNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAW-----EVF 560
               ++   Q  DVYSFGV+LLE+LTG+ +  D        V   G D S W     E  
Sbjct: 523 --DLRKASTQPADVYSFGVLLLELLTGRTSFKD-------LVHKYGSDISTWVRAVREEE 573

Query: 561 DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSIDGCANSIMN 620
                     EE+++ALL +A  C+A  P++RP M  V +M++D R +        ++ +
Sbjct: 574 TEVSEELNASEEKLQALLTIATACVAVKPENRPAMREVLKMVKDARAEA-------ALFS 626

Query: 621 NISSDSSPSQSENT 634
             SSD SP +  +T
Sbjct: 627 FNSSDHSPGRWSDT 640

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH71|Y1421_ARATH Putative inactive receptor-like protein kinase At1g64210 OS=Arabidopsis thaliana GN=At1g64210 PE=3 SV=1

 Score =  308 bits (789), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 212/619 (34%), Positives = 322/619 (52%), Gaps = 57/619 (9%)

Query: 6   IFFFSFFCLFSLCLSNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNP 65
           +FFFS    F L  S +   D   LL F +S   S      W  S+D C  SW GVTCN 
Sbjct: 5   LFFFSLILCFVLISSQTLEDDKKALLHFLSSFNSSR---LHWNQSSDVC-HSWTGVTCNE 60

Query: 66  STHRVIKLVLEDLDLTG--PAEVLSRLTQLRLLSL-KNNLLSSSNLNLSSWPHLKHLYLS 122
           +  R++ + L  +   G  P   +SRL+ L+ LSL KN+       + ++   L HLYL 
Sbjct: 61  NGDRIVSVRLPAVGFNGLIPPFTISRLSSLKFLSLRKNHFTGDFPSDFTNLKSLTHLYLQ 120

Query: 123 HNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSV 182
           HN  +G   +  S L++L+ +DLS+N + G IP T L+ L +L  L L +N F+G + ++
Sbjct: 121 HNHLSGPLLAIFSELKNLKVLDLSNNGFNGSIP-TSLSGLTSLQVLNLANNSFSGEIPNL 179

Query: 183 NSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPLPSDCSNRTVEPEQPPR 242
           +    S    N+SNN+L G IP  +  F  S+F+GN NL  R              +  R
Sbjct: 180 HLPKLS--QINLSNNKLIGTIPKSLQRFQSSAFSGN-NLTER--------------KKQR 222

Query: 243 SRPRSSRVVTVIVIVIFDAVAILVAVVTVTWCCYKRKRRSLRNGGGGVHKEVVMKRGNRK 302
             P     +  ++I+    V  +  +  +   C+ + R S    G    ++     GN  
Sbjct: 223 KTPFGLSQLAFLLILSAACVLCVSGLSFIMITCFGKTRIS----GKLRKRDSSSPPGNWT 278

Query: 303 GDYGGARDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKVVLDGGDVVVV 362
                  +GG +   + F G N  F ++ DLL SSAE+LGKG  G TYKV ++    VVV
Sbjct: 279 SRDDNTEEGGKI---IFFGGRNHLF-DLDDLLSSSAEVLGKGAFGTTYKVTMEDMSTVVV 334

Query: 363 KRIRERK-KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGS 421
           KR++E    +RE ++ + +IG +RH N+  ++AY   KD+   VY Y  HGSL  +LHG+
Sbjct: 335 KRLKEVVVGRREFEQQMEIIGMIRHENVAELKAYYYSKDDKLAVYSYYNHGSLFEILHGN 394

Query: 422 RGP-GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIG 480
           RG   R+P+DW+ RL++A+ +A+GLA +H   +    HG++ SSNI +D     CI D+G
Sbjct: 395 RGRYHRVPLDWDARLRIATGAARGLAKIH---EGKFIHGNIKSSNIFLDSQCYGCIGDVG 451

Query: 481 VHQLFHT---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKG 537
           +  +  +      +   Y+APE+          R+  Q  DVYSFGVVLLE+LTGK    
Sbjct: 452 LTTIMRSLPQTTCLTSGYHAPEIT-------DTRRSTQFSDVYSFGVVLLELLTGKSPVS 504

Query: 538 DGEL--------GIVKWVQMMGQDESAWEVFDFELIMDK-EMEEEMRALLQVALLCLAPL 588
             EL         +  W++ +   E   EVFD E++      EEEM  +LQ+ L C+A  
Sbjct: 505 QAELVPTGGENMDLASWIRSVVAKEWTGEVFDMEILSQSGGFEEEMVEMLQIGLACVALK 564

Query: 589 PKDRPNMSIVHRMIEDIRT 607
            ++RP+++ V ++IEDIR+
Sbjct: 565 QQERPHIAQVLKLIEDIRS 583

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FK10|Y5332_ARATH Probable inactive receptor kinase At5g53320 OS=Arabidopsis thaliana GN=At5g53320 PE=1 SV=1

 Score =  296 bits (758), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 215/640 (33%), Positives = 336/640 (52%), Gaps = 47/640 (7%)

Query: 2   LASRIFFFSFFCLFSLCL-SNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRG 60
           +  ++       +F++C+ + +   D  TLL F  ++   S SL+ W  S   C   W G
Sbjct: 1   MKCQVVLILIVVIFNVCIEAETIKEDKHTLLQFVNNIN-HSHSLN-WSPSLSIC-TKWTG 57

Query: 61  VTCNPSTHRVIKLVLEDLDLTGPAE--VLSRLTQLRLLSLK-NNLLSSSNLNLSSWPHLK 117
           VTCN     V  L L    L G  E  +++RL+ LR L L  NN+  +    L +  +L 
Sbjct: 58  VTCNSDHSSVDALHLAATGLRGDIELSIIARLSNLRFLILSSNNISGTFPTTLQALKNLT 117

Query: 118 HLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTG 177
            L L  N F+G  PS +SS   L+ +DLS+N + G IP + + +L  L +L L  N+F+G
Sbjct: 118 ELKLDFNEFSGPLPSDLSSWERLQVLDLSNNRFNGSIP-SSIGKLTLLHSLNLAYNKFSG 176

Query: 178 TLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPLPSDCSNRTVEP 237
            +  ++     +L  N+++N L+G +P  +  F  S+F GNK L   P+ S     T   
Sbjct: 177 EIPDLHIPGLKLL--NLAHNNLTGTVPQSLQRFPLSAFVGNKVLA--PVHSSLRKHT--- 229

Query: 238 EQPPRSRPRSSRVVTVIVIVIFDAVAILVAVVTVTWCCYKRKRRSLRNGGGGVHKEVVMK 297
                 +  +  V+ + + V F  +A+L  ++ +     + +RRS ++           K
Sbjct: 230 ------KHHNHVVLGIALSVCFAILALLAILLVIIIHNREEQRRSSKD-----------K 272

Query: 298 RGNRKGDYGGARDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKVVLDGG 357
              R+ D       GD  ++V FEG N  F ++ DLL++SAE+LGKG  G TYKV L+  
Sbjct: 273 PSKRRKDSDPNVGEGD-NKIVFFEGKNLVF-DLEDLLRASAEVLGKGPFGTTYKVDLEDS 330

Query: 358 DVVVVKRIRERK-KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS 416
             +VVKRI+E    +RE ++ +  IG ++H N+ ++R Y   KDE  +VYDY  HGSL +
Sbjct: 331 ATIVVKRIKEVSVPQREFEQQIENIGSIKHENVATLRGYFYSKDEKLVVYDYYEHGSLST 390

Query: 417 LLHGSRG-PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNAC 475
           LLHG +G   R  ++W  RL +   +A+G+A +H  +   L HG++ SSNI ++  G  C
Sbjct: 391 LLHGQKGLRDRKRLEWETRLNMVYGTARGVAHIHSQSGGKLVHGNIKSSNIFLNGKGYGC 450

Query: 476 ISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA 535
           IS  G+  L H+       Y APE+          RK  Q  DVYSFG+++ E+LTGK  
Sbjct: 451 ISGTGMATLMHSLPRHAVGYRAPEIT-------DTRKGTQPSDVYSFGILIFEVLTGKSE 503

Query: 536 KGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNM 595
             +    +V+WV  + ++E   EVFD EL+   ++EEEM  +LQV ++C A LP+ RPNM
Sbjct: 504 VAN----LVRWVNSVVREEWTGEVFDEELLRCTQVEEEMVEMLQVGMVCTARLPEKRPNM 559

Query: 596 SIVHRMIEDIRTKGSIDGCANSIMNNISSDSSPSQSENTY 635
             V RM+E+IR +    G  + +    ++    S S + Y
Sbjct: 560 IEVVRMVEEIRPEKLASGYRSEVSTGATTTPIGSLSGSPY 599

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	640
224092188	651	predicted protein [Populus trichocarpa]	0.942	0.926	0.617	0.0
255550772	655	serine-threonine protein kinase, plant-t	0.981	0.958	0.601	0.0
359475948	608	PREDICTED: probable leucine-rich repeat	0.925	0.973	0.579	0.0
296081654	580	unnamed protein product [Vitis vinifera]	0.881	0.972	0.555	1e-169
225424043	671	PREDICTED: probable leucine-rich repeat	0.917	0.874	0.4	1e-113
356573813	642	PREDICTED: probable leucine-rich repeat	0.862	0.859	0.438	1e-111
297841559	669	At1g68400/T2E12_5 [Arabidopsis lyrata su	0.918	0.878	0.410	1e-109
356534353	672	PREDICTED: probable leucine-rich repeat	0.918	0.875	0.404	1e-107
224108443	677	predicted protein [Populus trichocarpa]	0.907	0.858	0.407	1e-107
449434600	672	PREDICTED: probable leucine-rich repeat	0.903	0.860	0.409	1e-107

>gi|224092188|ref|XP_002309500.1| predicted protein [Populus trichocarpa] gi|222855476|gb|EEE93023.1| predicted protein [Populus trichocarpa]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/635 (61%), Positives = 473/635 (74%), Gaps = 32/635 (5%)

Query: 26  DISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPAE 85
           D  TLLSFK+S+  SS++LS+WVNST+PC DSW GVTC+P+THRV KLVLE+L+LTG  +
Sbjct: 26  DFITLLSFKSSLLDSSNALSTWVNSTNPCIDSWLGVTCHPTTHRVTKLVLENLNLTGSID 85

Query: 86  VLSRLTQLRLLSLKNNLLSSS-NLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVD 144
            LS+LTQLRLLSLK N LSS+ +LN SS  +LK LYLSHNR +G FPSG+ SLR LRR+D
Sbjct: 86  ALSQLTQLRLLSLKQNHLSSAFDLNFSSLKNLKLLYLSHNRLSGNFPSGIHSLRRLRRLD 145

Query: 145 LSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNS-SSRSILDFNVSNNQLSGQI 203
           LS+N + GEIP  EL ++P LLTLRL+ N FTG +   +   S SIL+FNVSNN LSG+I
Sbjct: 146 LSYNYFYGEIPFPELAQMPRLLTLRLDFNSFTGKIGPFSFFPSGSILEFNVSNNFLSGEI 205

Query: 204 PAWMSPFGGSSFAGNKNLCGRPLPSDCSNRTVE--PEQP-----PRSRPRSSRVVTVIVI 256
           PA  S F  SSF+GNKNLCG+PL  DC +RTVE  P +P        + +      V +I
Sbjct: 206 PAIFSRFPVSSFSGNKNLCGKPLALDCFHRTVESEPAKPGDVGMKNKKKKGVSDWAVFLI 265

Query: 257 VIFDAVAILVAVVTVTWCCYKRKRRSLRNGGGGVHKEVVMKRGNRKGDYGGARDGGDV-- 314
           +  DAV IL A+VT+T CCY +KRR   N G         +R  RK    G+ +      
Sbjct: 266 ITVDAVTILAALVTITCCCYFKKRR---NSGA-------QERIKRKVRLAGSLNSMGGFY 315

Query: 315 ---------EEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKVVLDGGDVVVVKRI 365
                    E MV+F+GC KGF +V DLLKSSAELLGKG  G TYKVV+DGGD++VVKR+
Sbjct: 316 GAGAGGGRDEVMVVFDGC-KGFGDVDDLLKSSAELLGKGFAGTTYKVVVDGGDMMVVKRV 374

Query: 366 RERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPG 425
           RER+K++EVD WLR+IGGLRHSNIVS+RAY +  +EL LVYD+LP+GSLHSLLHG+RGPG
Sbjct: 375 RERRKRKEVDSWLRIIGGLRHSNIVSLRAYYDSNEELLLVYDFLPNGSLHSLLHGNRGPG 434

Query: 426 RMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF 485
           R P+DW  RLKLAS SA GLAFLHGYNKA  FHG+L+SSNIVVD LGNAC+SDIG+HQL 
Sbjct: 435 RTPLDWTTRLKLASGSALGLAFLHGYNKAKHFHGNLTSSNIVVDHLGNACVSDIGLHQLL 494

Query: 486 HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVK 545
           H     N+ Y APEL  NN NN SQR+F Q+CDVYSFGV+LLEILTGKM  G+GE  +VK
Sbjct: 495 HAASISNNGYKAPELMPNNQNNVSQRRFTQKCDVYSFGVILLEILTGKMPNGEGETSLVK 554

Query: 546 WVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
           WVQ + ++E  WEVFDFEL+  KEMEEEM  L+QVALLCLAP P+DRP MS+VH MIEDI
Sbjct: 555 WVQRVAREEWTWEVFDFELLRYKEMEEEMVGLMQVALLCLAPFPRDRPKMSMVHMMIEDI 614

Query: 606 RTKGSID-GCANSIMNNISSDSSPSQSENTYNFTN 639
           RTKG    G  +SIMN++SSDSSPS SE+T NFT+
Sbjct: 615 RTKGGRQLGDRSSIMNDLSSDSSPSLSESTLNFTS 649

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550772|ref|XP_002516434.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223544254|gb|EEF45775.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/655 (60%), Positives = 488/655 (74%), Gaps = 27/655 (4%)

Query: 4   SRIFFFSFFCLFSLCLSNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTC 63
           S  F+F  F LF    S+S   D++ LLSFK S++  S +LSSW+N+++PC DSW GVTC
Sbjct: 9   SFFFYFIVFLLFISGSSSSSNCDLAALLSFKKSLSEPSITLSSWINTSNPCLDSWYGVTC 68

Query: 64  NPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLS 122
           NP+THRV +LVLE+L+LTG    L++LTQLRLLSLK+N LSS S+LNL++WP +KHLYLS
Sbjct: 69  NPTTHRVTRLVLENLNLTGSITPLTKLTQLRLLSLKHNNLSSFSSLNLAAWPSMKHLYLS 128

Query: 123 HNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSV 182
           +NR +G FPS +SSL+ L R+DLS+N   G IP++E++ LP LLTLRLEDN F G++ SV
Sbjct: 129 YNRLSGPFPSAISSLKRLHRLDLSYNHLSGHIPISEISSLPLLLTLRLEDNSFDGSIDSV 188

Query: 183 NSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPLPSDCSNRTVEPEQPPR 242
           +  S S+L+FNVSNN+LSG+IPAW S F  SSFAGN  LCG PLP +C N++V   QP +
Sbjct: 189 HMLSLSVLEFNVSNNRLSGKIPAWSSRFPASSFAGNGELCGEPLPRECWNQSVH-SQPVQ 247

Query: 243 S------RPRSSRVVTVIVIVIFDAVAILVAVVTVTWCCYKRKRRS---------LRNGG 287
           S        +      V++IV  D  AI+VA+VT+  CCY R+RR          ++  G
Sbjct: 248 SGKDGLTTVKKVNNWVVVMIVGVDTAAIVVAIVTIACCCYYRRRRRRNNRTYGEVIKRKG 307

Query: 288 GGVHKEVVMKRGNRKGDYGGARDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVG 347
           G  H E+        G     RDG   EEMV+FEGC KGF +V DLLKSSAELLGKG VG
Sbjct: 308 GSHHPEIGAYYYGGGG----VRDG---EEMVVFEGC-KGFTDVDDLLKSSAELLGKGSVG 359

Query: 348 ATYKVVLDGGDVVVVKRIRERKKKREVDE-WLRVIGGLRHSNIVSIRAYCNGKDELFLVY 406
            TYKV +D GD VVVKR+RER+++R     WLR+IGGLRH+NIVS+RAY N KDEL LV+
Sbjct: 360 TTYKVEMDSGDTVVVKRVRERRRRRSEVGGWLRMIGGLRHTNIVSLRAYYNSKDELLLVH 419

Query: 407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNI 466
           D+LP+GSLHSLLHG+RGPGR P++W+ RL+LAS SAKGLAF HGY+KA LFHG+L+SSNI
Sbjct: 420 DFLPNGSLHSLLHGNRGPGRTPLEWSTRLQLASGSAKGLAFFHGYHKAKLFHGNLTSSNI 479

Query: 467 VVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVL 526
           +VD  GNACISDIG+HQL H+P   NDAY APEL  NNNN     KF QRCDVYSFGV+L
Sbjct: 480 LVDSWGNACISDIGIHQLLHSPPLSNDAYKAPELMPNNNNIIIHGKFTQRCDVYSFGVIL 539

Query: 527 LEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLA 586
           LEILTGKM  G+GE  + +WVQ + ++E  WEVFDFEL+  KEMEEEM AL+QVALLCLA
Sbjct: 540 LEILTGKMPTGEGETSLGRWVQKVPREEWTWEVFDFELLRSKEMEEEMVALMQVALLCLA 599

Query: 587 PLPKDRPNMSIVHRMIEDIRTK-GSIDGCANSIMNNISSDSSPSQSENTYNFTNS 640
            LP+DRP MS+VHRMIEDIRTK  +    ++SI+N+ISSDSSPS SENT NFT+S
Sbjct: 600 TLPRDRPKMSMVHRMIEDIRTKGSARGSASSSILNDISSDSSPSLSENTINFTSS 654

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475948|ref|XP_002279173.2| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400-like [Vitis vinifera]

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/635 (57%), Positives = 451/635 (71%), Gaps = 43/635 (6%)

Query: 11  FFCLFSLCLSNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTHRV 70
            F L  L L N    D + LL+FK+S +   +SLSSW NST PC  SW GVTCN    +V
Sbjct: 12  IFSLLQLSLCNP---DFTALLAFKSS-SDHFNSLSSWSNSTHPCSGSWLGVTCN--NGQV 65

Query: 71  IKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTF 130
             LVL+ L+LTG    LSRL QLRLLSL +N LSS  +NLSSWP+LKHLYLS NRF+G F
Sbjct: 66  THLVLDRLNLTGSTRALSRLPQLRLLSLNHNRLSSV-VNLSSWPNLKHLYLSDNRFSGEF 124

Query: 131 PSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSIL 190
           P+GVSS+R +RR+ LSHN + GEIPM +LT+L +LLTLRLE+N FTGTL S +SSS SI 
Sbjct: 125 PAGVSSIRRIRRLVLSHNNFSGEIPMNKLTQLRHLLTLRLEENSFTGTLSSNSSSS-SIY 183

Query: 191 DFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPLPSDCSNRTVEPEQPPRSRPRSSRV 250
           DFNVS N L+G+IPAW+S F  SSFA N  LCG+PL   CSN       P ++  R  RV
Sbjct: 184 DFNVSGNNLAGEIPAWLSQFPLSSFARNAKLCGKPLGYSCSN------GPTKTSKRKRRV 237

Query: 251 --VTVIVIVIFDAVAILVAVVTVTWCCYKRKRRSLRNGGGGVHKEVVMKRGNRKGDYGGA 308
               ++VI+IFDAVA +  ++TV WCCY    RS+     GVH+E+            G 
Sbjct: 238 SDALILVIIIFDAVAGVGIIMTVGWCCY----RSMSRRRTGVHREM------------GG 281

Query: 309 RDGGDVE--EMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKVVLDGGDVVVVKRIR 366
            DG   E  EMVMFEGC KGF  V DLLK+SAELLGKG VG+TYKVV++GG VV VKR+R
Sbjct: 282 SDGAPRERNEMVMFEGC-KGFSKVDDLLKASAELLGKGSVGSTYKVVMEGGGVVAVKRVR 340

Query: 367 ERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGR 426
           E  K+RE+D  ++ IGGLRH NIVS+RAY   +DEL LVYD+LP+GSLHSLLHG+RGPGR
Sbjct: 341 EGLKRREIDGLMKEIGGLRHRNIVSLRAYYFSRDELLLVYDFLPNGSLHSLLHGNRGPGR 400

Query: 427 MPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH 486
            P+DW  RLKLAS +A+GLAFLHG NK+ L HGHL+SSNI+VD  GNACI+DIG+H    
Sbjct: 401 TPLDWTTRLKLASGAARGLAFLHGCNKSKLTHGHLTSSNIIVDTSGNACIADIGLHHFLP 460

Query: 487 TPFFIND-AYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVK 545
                +D AY  PEL  N+++     K  Q+ DVYSFGVVLLEILTGKM  G+GE  + K
Sbjct: 461 AQSSSSDNAYTPPELAVNHHHA----KLSQKADVYSFGVVLLEILTGKMVVGEGETSLAK 516

Query: 546 WVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
           WV+M  ++E  WEVFDFEL   KEME+EM+ALLQ+ALLCLAPLP+DRP MS++H+MIEDI
Sbjct: 517 WVEMRQEEEWTWEVFDFELWRYKEMEQEMKALLQIALLCLAPLPRDRPKMSMMHKMIEDI 576

Query: 606 RTKGSIDGCANSIMNNISSDSSPSQSENTYNFTNS 640
           R KG   G  + ++++  S    SQSE+T NFT+S
Sbjct: 577 RMKG---GQKDGVVHSPLSSGYSSQSESTPNFTSS 608

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081654|emb|CBI20659.3| unnamed protein product [Vitis vinifera]

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 353/635 (55%), Positives = 429/635 (67%), Gaps = 71/635 (11%)

Query: 11  FFCLFSLCLSNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTHRV 70
            F L  L L N    D + LL+FK+S +   +SLSSW NST PC  SW GVTCN    +V
Sbjct: 12  IFSLLQLSLCNP---DFTALLAFKSS-SDHFNSLSSWSNSTHPCSGSWLGVTCN--NGQV 65

Query: 71  IKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTF 130
             LVL+ L+LTG    LSRL QLRLLSL +N LSS  +NLSSWP+LKHLYLS NRF+G F
Sbjct: 66  THLVLDRLNLTGSTRALSRLPQLRLLSLNHNRLSSV-VNLSSWPNLKHLYLSDNRFSGEF 124

Query: 131 PSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSIL 190
           P+G   LRHL                         LTLRLE+N FTGTL S +SSS SI 
Sbjct: 125 PAG---LRHL-------------------------LTLRLEENSFTGTLSSNSSSS-SIY 155

Query: 191 DFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPLPSDCSNRTVEPEQPPRSRPRSSRV 250
           DFNVS N L+G+IPAW+S F  SSFA N  LCG+PL   CSN       P ++  R  RV
Sbjct: 156 DFNVSGNNLAGEIPAWLSQFPLSSFARNAKLCGKPLGYSCSN------GPTKTSKRKRRV 209

Query: 251 --VTVIVIVIFDAVAILVAVVTVTWCCYKRKRRSLRNGGGGVHKEVVMKRGNRKGDYGGA 308
               ++VI+IFDAVA +  ++TV WCCY    RS+     GVH+E+            G 
Sbjct: 210 SDALILVIIIFDAVAGVGIIMTVGWCCY----RSMSRRRTGVHREM------------GG 253

Query: 309 RDGGDVE--EMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKVVLDGGDVVVVKRIR 366
            DG   E  EMVMFEGC KGF  V DLLK+SAELLGKG VG+TYKVV++GG VV VKR+R
Sbjct: 254 SDGAPRERNEMVMFEGC-KGFSKVDDLLKASAELLGKGSVGSTYKVVMEGGGVVAVKRVR 312

Query: 367 ERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGR 426
           E  K+RE+D  ++ IGGLRH NIVS+RAY   +DEL LVYD+LP+GSLHSLLHG+RGPGR
Sbjct: 313 EGLKRREIDGLMKEIGGLRHRNIVSLRAYYFSRDELLLVYDFLPNGSLHSLLHGNRGPGR 372

Query: 427 MPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH 486
            P+DW  RLKLAS +A+GLAFLHG NK+ L HGHL+SSNI+VD  GNACI+DIG+H    
Sbjct: 373 TPLDWTTRLKLASGAARGLAFLHGCNKSKLTHGHLTSSNIIVDTSGNACIADIGLHHFLP 432

Query: 487 TPFFIND-AYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVK 545
                +D AY  PEL  N+++     K  Q+ DVYSFGVVLLEILTGKM  G+GE  + K
Sbjct: 433 AQSSSSDNAYTPPELAVNHHHA----KLSQKADVYSFGVVLLEILTGKMVVGEGETSLAK 488

Query: 546 WVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
           WV+M  ++E  WEVFDFEL   KEME+EM+ALLQ+ALLCLAPLP+DRP MS++H+MIEDI
Sbjct: 489 WVEMRQEEEWTWEVFDFELWRYKEMEQEMKALLQIALLCLAPLPRDRPKMSMMHKMIEDI 548

Query: 606 RTKGSIDGCANSIMNNISSDSSPSQSENTYNFTNS 640
           R KG   G  + ++++  S    SQSE+T NFT+S
Sbjct: 549 RMKG---GQKDGVVHSPLSSGYSSQSESTPNFTSS 580

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424043|ref|XP_002279580.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400-like [Vitis vinifera]

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 262/655 (40%), Positives = 381/655 (58%), Gaps = 68/655 (10%)

Query: 2   LASRIFFFSFFCLFSLCLSNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGV 61
           L S  F F+ F L    L  S  SD+  L++FK +   +++ L++W  + +PC  SW GV
Sbjct: 6   LTSLHFAFALFILHFFLLHASTSSDLEALMAFKETAD-AANKLTTWNVTVNPC--SWYGV 62

Query: 62  TCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYL 121
           +C    +RV +LVLE LDL G  + L+ LTQLR+LSLK N LS    NLS+   LK L+L
Sbjct: 63  SC--LQNRVSRLVLEGLDLQGSFQPLASLTQLRVLSLKRNRLSGPIPNLSNLTALKLLFL 120

Query: 122 SHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYS 181
           S+N F+G FP+ V+SL  L R+DLSHN   G+IP T +  L ++LTLRLE+NRF+G++  
Sbjct: 121 SYNEFSGEFPASVTSLFRLYRLDLSHNNLSGQIPET-VNHLAHILTLRLEENRFSGSITG 179

Query: 182 VNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPLPSDCSNRTVEPEQP- 240
           +N  +  + DFNVS N+L+G IP  +S F  S+F  N  LCG P+P+ C N   +P +P 
Sbjct: 180 LNLPN--LQDFNVSGNRLAGDIPKTLSAFPVSAFDRNAVLCGSPMPT-CKNVAGDPTKPG 236

Query: 241 -----------------------------PRSRPRSSR------VVTVIVIVIFDAVAIL 265
                                           +P+++R      V  V +I I     ++
Sbjct: 237 SGGAIASPVIPGGNPAIVASSPSSIPISTTPIQPQNTRHGATGKVSPVAMIAIILGDILV 296

Query: 266 VAVVTVTWCCYKRKRRSLRNGGGGVHKEVVMKRGNRKGDYGGARDGGDVEEMVMFEGCNK 325
           +A+V++   CY  +  + +   G   + +  ++         A+ G +   MV FEG  +
Sbjct: 297 LAIVSLLLYCYFWRNYAGKMRDGKSSQILEGEKIVYSSSPYPAQAGYERGRMVFFEGVKR 356

Query: 326 GFRNVGDLLKSSAELLGKGCVGATYKVVLDGGDVVVVKRIRERK--KKREVDEWLRVIGG 383
               + DLL++SAE+LGKG  G  YK VLD G+VV VKR+++     KRE ++ + V+G 
Sbjct: 357 --FELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAHVGGKREFEQHMEVLGR 414

Query: 384 LRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAK 443
           LRH N+V++RAY   +DE  LVYDY+P+GSL  LLHG+RGPGR P+DW  RLK+A+ +A+
Sbjct: 415 LRHPNVVNLRAYYFARDEKLLVYDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGAAR 474

Query: 444 GLAFLHGYNKA-HLFHGHLSSSNIVVDQLGNACISDIGVHQLF-HTPFFINDAYNAPELK 501
           GLAF+H   K   L HG++ S+NI++D+ G+A +SD G+      T    ++ Y APE+ 
Sbjct: 475 GLAFIHNSCKTLKLTHGNIKSTNILLDKCGSARVSDFGLSVFASSTAAPRSNGYRAPEI- 533

Query: 502 FNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK----------MAKGDGELGIVKWVQMMG 551
                    RK  Q+ DVYSFGV+LLE+LTGK           +   G + + +WVQ + 
Sbjct: 534 ------LDGRKGSQKSDVYSFGVLLLELLTGKCPSVMENGGPGSGYGGVVDLPRWVQSVV 587

Query: 552 QDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR 606
           ++E   EVFD EL+  K++EEEM  LLQ+A+ C  P P  RP MS V +MIE+IR
Sbjct: 588 REEWTAEVFDLELMRYKDIEEEMVGLLQIAMACTTPSPDQRPKMSYVVKMIEEIR 642

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573813|ref|XP_003555050.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400-like [Glycine max]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 264/602 (43%), Positives = 360/602 (59%), Gaps = 50/602 (8%)

Query: 26  DISTLLSFKASVTGSSDSLSSW-VNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPA 84
           D   L+SFKAS   S+  LS W   S++PC  +W GV+C    HRV  LVLEDL+LTG  
Sbjct: 33  DFHPLMSFKASSDPSNKFLSQWNSTSSNPC--TWHGVSC--LHHRVSHLVLEDLNLTGSI 88

Query: 85  EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVD 144
             L+ LTQLR+LSLK N       +LS+   LK L+LSHN+F+G FP+ V+SL HL R+D
Sbjct: 89  LPLTSLTQLRILSLKRNRFDGPFPSLSNLTALKLLFLSHNKFSGEFPATVTSLPHLYRLD 148

Query: 145 LSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP 204
           +SHN   G+IP T +  L +LLTLRL+ N   G + ++ + S  + DFNVS+NQLSGQIP
Sbjct: 149 ISHNNLSGQIPAT-VNHLTHLLTLRLDSNNLRGRIPNMINLSH-LQDFNVSSNQLSGQIP 206

Query: 205 AWMSPFGGSSFAGNKNLCGRPLPSDCSNRTVE-PEQPPRSRPRSSRV------------- 250
             +S F GS+F+ N  LCG PL   C  +T   P      +PR+  V             
Sbjct: 207 DSLSGFPGSAFSNNLFLCGVPL-RKCKGQTKAIPALASPLKPRNDTVLNKRKTHGAAPKI 265

Query: 251 -VTVIVIVIFDAVAILVAVVTVTWCCYKRKRRSLRNGGGGVHKE--VVMKRGNRKGDYGG 307
            V V+VI++   V +L  V  + +C + R    L+ G    H +   V K        G 
Sbjct: 266 GVMVLVIIVLGDVLVLALVSFLLYCYFWRL---LKEGKAETHSKSNAVYK--------GC 314

Query: 308 ARDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKVVLDGGDVVVVKRIRE 367
           A  G + + MV  EG  +    + +LL++SAE+LGKG  G  YK VLD G V  VKR++E
Sbjct: 315 AERGVNSDGMVFLEGVMR--FELEELLRASAEMLGKGVFGTAYKAVLDDGTVAAVKRLKE 372

Query: 368 RK--KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPG 425
                KRE  + + V+G LRH N+V +RAY   KDE  LV DY+P+GSL  LLHG+RGPG
Sbjct: 373 VSVGGKREFQQRMEVLGRLRHCNVVPLRAYYFAKDEKLLVSDYMPNGSLSWLLHGNRGPG 432

Query: 426 RMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF 485
           R P+DW  R+KLA+ +A+G+AF+H  +K  L HG++ S+N++VD +GNAC+SD G+  +F
Sbjct: 433 RTPLDWTTRVKLAAGAARGIAFIHNSDK--LTHGNIKSTNVLVDVVGNACVSDFGLSSIF 490

Query: 486 HTPFFI-NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGE-LGI 543
             P    ++ Y APE   +       RK     DVYSFGV+L+EILTGK      E L +
Sbjct: 491 AGPTCARSNGYLAPEASLDG------RKQTHMSDVYSFGVLLMEILTGKCPSAAAEALEL 544

Query: 544 VKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIE 603
            +WV+ + ++E   EVFD EL+  K++EEEM ALLQ+A+ C    P  RP MS V +MIE
Sbjct: 545 PRWVRSVVREEWTAEVFDLELMRYKDIEEEMVALLQIAMACTVAAPDQRPRMSHVAKMIE 604

Query: 604 DI 605
           D+
Sbjct: 605 DL 606

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841559|ref|XP_002888661.1| At1g68400/T2E12_5 [Arabidopsis lyrata subsp. lyrata] gi|297334502|gb|EFH64920.1| At1g68400/T2E12_5 [Arabidopsis lyrata subsp. lyrata]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 270/657 (41%), Positives = 383/657 (58%), Gaps = 69/657 (10%)

Query: 31  LSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRL 90
           L+FK +   S+  L+SW  +T+PC   W GV+CN   +RV +LVLED++LTG    L+ L
Sbjct: 34  LNFKLTAD-STGKLNSWNKTTNPC--QWTGVSCN--RNRVTRLVLEDIELTGSISPLTSL 88

Query: 91  TQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAY 150
           T LR+LSLK+N LS    NLS+   LK L+LSHN+F+G FPS ++SL  L R+DLS N +
Sbjct: 89  TSLRVLSLKHNSLSGPIPNLSNLTALKLLFLSHNQFSGNFPSSITSLTRLYRLDLSFNNF 148

Query: 151 EGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPF 210
            GEIP  +LT L +LLTLRLE NRF+G + ++  S   + DFNVS N  +GQIP  +S F
Sbjct: 149 SGEIP-PDLTNLNHLLTLRLESNRFSGQIPNIIISD--LQDFNVSGNNFNGQIPNSLSQF 205

Query: 211 GGSSFAGNKNLCGRPLPSDCSNRTVEPEQPPR----------------SRPRS------- 247
             S F  N +LCG PL   C+  + +P +P R                S P S       
Sbjct: 206 PESVFTQNPSLCGAPL-LKCTKLSSDPTKPGRPDGAKASPLNNSETVPSSPTSIHGGDKS 264

Query: 248 -SRVVTV-IVIVIFDAVAILVAVVTVTWCCY-------KRKRRSLRNGGGGVHKEVVMKR 298
            +R+ T+ +V +I     IL  V  + + C+       K+K   +  G   V+       
Sbjct: 265 TTRISTISLVAIILGDFIILSFVSLLLYYCFWRQYAVNKKKHSKVLEGEKIVYSSSPYPT 324

Query: 299 GNRKGDYGGARDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKVVLDGGD 358
            + + +    + GG+  +MV FEG  +    + DLL++SAE+LGKG  G  YK VL+ G+
Sbjct: 325 -SAQNNNNQNQQGGEKGKMVFFEGTRR--FELEDLLRASAEMLGKGGFGTAYKAVLEDGN 381

Query: 359 VVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH 415
            V VKR+++      K+E ++ + V+G LRH+N+VS++AY   ++E  LVYDY+P+GSL 
Sbjct: 382 EVAVKRLKDAVTVAGKKEFEQQMEVLGRLRHTNLVSLKAYYFAREEKLLVYDYMPNGSLF 441

Query: 416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA-HLFHGHLSSSNIVVDQLGNA 474
            LLHG+RGPGR P+DW  RLK+A+ +A+GLAF+HG  K   L HG + S+N+++D+ GNA
Sbjct: 442 WLLHGNRGPGRTPLDWTTRLKIAAGAARGLAFIHGSCKTLKLTHGDIKSTNVLLDRSGNA 501

Query: 475 CISDIGVHQLFHTPFFI--NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
            +SD G+  +F     +  ++ Y APEL          RK  Q+ DVYSFGV+LLEILTG
Sbjct: 502 RVSDFGL-SIFAPSQTVAKSNGYRAPELT-------DGRKHTQKSDVYSFGVLLLEILTG 553

Query: 533 KMAK---------GDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALL 583
           K              G + + +WVQ + ++E   EVFD EL+  K++EEEM  LLQ+A+ 
Sbjct: 554 KCPNMVETGHSGGAGGAVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMA 613

Query: 584 CLAPLPKDRPNMSIVHRMIEDIRTKGSIDGCANSIMNNISSDSSPSQSENTYNFTNS 640
           C A     RP M  V ++IEDIR  GS     N  +N  S+  SP  SE+T   T S
Sbjct: 614 CTAVAADHRPKMDHVVKLIEDIRGGGSEASPCNDGIN--SAVDSPCLSEDTCGGTTS 668

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534353|ref|XP_003535720.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400-like [Glycine max]

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 270/667 (40%), Positives = 386/667 (57%), Gaps = 79/667 (11%)

Query: 26  DISTLLSFKASVTGSSDSLSSW-VNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPA 84
           D   LLSFK + + +S  L++W +NST+PC  SW+GV+C     RV +LVLE+LDL G  
Sbjct: 31  DFDALLSFK-TASDTSQKLTTWNINSTNPC--SWKGVSC--IRDRVSRLVLENLDLEGSI 85

Query: 85  EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVD 144
             L+ LTQLR+LSLK N  S    NLS+   LK L+LS N F+G FP+ V SL  L R+D
Sbjct: 86  HPLTSLTQLRVLSLKGNRFSGPVPNLSNLTALKLLFLSRNAFSGEFPATVKSLFRLYRLD 145

Query: 145 LSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP 204
           LS+N + GEIP T ++ L +LLTLRL+ N+F+G +  VN     + +FNVS N+LSG+IP
Sbjct: 146 LSNNNFSGEIPAT-VSHLTHLLTLRLDGNKFSGHIPDVNLPG--LQEFNVSGNRLSGEIP 202

Query: 205 AWMSPFGGSSFAGNKNLCGRPLPSDCSNRT--------VEPEQPPRSRPR---------- 246
             +S F  SSF  N  LCG P+ +   + T          P  PP + P           
Sbjct: 203 KSLSNFPESSFGQNPFLCGAPIKNCAPDPTKPGSEGAIASPLVPPNNNPTTTVSSSPSSM 262

Query: 247 ------------------SSRVVTVIVIVIFDAVAILVAVVTVTWCCYKRKRRSLRNGGG 288
                              S++  V +I I     +++A+V++   CY  +   L+ G G
Sbjct: 263 PKTPASASTKSNKSHGKGGSKISPVALIAIIVCDVLVLAIVSLLLYCYFWRNYKLKEGKG 322

Query: 289 G--VHKEVVMKRGNRKGDYGGARDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCV 346
                 E ++   +     GG   G     MV FEG  K F  + DLL++SAE+LGKG  
Sbjct: 323 SKLFESEKIVYSSSPYPAQGGFERG----RMVFFEG-EKRFE-LEDLLRASAEMLGKGGF 376

Query: 347 GATYKVVLDGGDVVVVKRIRERK--KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFL 404
           G  YK VLD G+VV VKR+++ +   KRE ++ + ++G LRH N+VS+RAY   ++E  L
Sbjct: 377 GTAYKAVLDDGNVVAVKRLKDAQITGKREFEQHMELLGRLRHPNVVSLRAYYFAREEKLL 436

Query: 405 VYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA-HLFHGHLSS 463
           VYDY+P+ +L  LLHG+RGPGR P+DW  RLK+A+ +A+G+AF+H   K+  L HG++ S
Sbjct: 437 VYDYMPNATLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHNSCKSLKLTHGNIKS 496

Query: 464 SNIVVDQLGNACISDIGVHQLFHTPFFI---NDAYNAPELKFNNNNNYSQRKFWQRCDVY 520
           +N+++D+ GNA +SD G+  +F  P  +   ++ Y APE           RK  Q+ DVY
Sbjct: 497 TNVLLDKQGNARVSDFGL-SVFAGPGPVGGRSNGYRAPEAS-------EGRKQTQKSDVY 548

Query: 521 SFGVVLLEILTGKM-----AKGDGELGIV---KWVQMMGQDESAWEVFDFELIMDKEMEE 572
           SFGV+LLE+LTGK      + G    G+V   +WVQ + ++E   EVFD EL+  K++EE
Sbjct: 549 SFGVLLLELLTGKCPSVVESGGSAYGGVVDLPRWVQSVVREEWTAEVFDLELMRYKDIEE 608

Query: 573 EMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSIDGCANSIMNNISSDSSPSQSE 632
           EM  LLQ+A+ C AP P  RP M+ V +MIE++R    +  C +S+    S   SPS SE
Sbjct: 609 EMVGLLQIAMTCTAPAPDQRPRMTHVLKMIEELRGV-EVSPCHDSL---DSVSESPSLSE 664

Query: 633 NTYNFTN 639
           +    T+
Sbjct: 665 DACGTTS 671

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108443|ref|XP_002314848.1| predicted protein [Populus trichocarpa] gi|222863888|gb|EEF01019.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 275/675 (40%), Positives = 386/675 (57%), Gaps = 94/675 (13%)

Query: 2   LASRIFFFSFFCLFSLC------LSNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCF 55
           LA  IF F +   F L       L  S   D   LL FK +++ + + L  W +ST+PC 
Sbjct: 1   LAKPIFLFPYMTTFFLISLHFSLLQASSNPDSEPLLQFK-TLSDTDNKLQDWNSSTNPC- 58

Query: 56  DSWRGVTCNPSTHRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLK-NNLLSSSNLNLSSW 113
            +W G+ C     RV +LVLE+L+L G + + L+ LTQLR+LSLK NNL      N+S+ 
Sbjct: 59  -TWTGIAC--LNDRVSRLVLENLNLQGSSLQTLTSLTQLRVLSLKRNNLSGPIPQNISNL 115

Query: 114 PHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDN 173
             LK L+LSHN F+GTFP  V SL  L R+DLSHN + G IP+  + RL +LLTLRLE+N
Sbjct: 116 SALKLLFLSHNHFSGTFPVSVLSLSRLYRLDLSHNNFSGNIPVI-VNRLTHLLTLRLEEN 174

Query: 174 RFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGN--KNLCGRPLPSDCS 231
           +FTG++ S+N  S  + DFNVSNN++SG+IP  +S F  S+FA +    LCG PL + C 
Sbjct: 175 QFTGSISSLNLPS--LQDFNVSNNRVSGEIPKSLSGFPESAFAQSLPAGLCGSPLQA-CK 231

Query: 232 NRTVEPEQP-----------PRSRPRS--------------------------SRVVTVI 254
           +   +P +P           P + P S                          +++  + 
Sbjct: 232 SLASDPTRPGSDGAIASPLLPGTNPTSIVSSTPSSVVAPNKPTNTNHKISKTSTKISPLA 291

Query: 255 VIVIFDAVAILVAVVTVTWCCY--KRKRRSLRNGGGG--VHKEVVMKRGNRKGDYGGARD 310
           +I I     +++AVV++   CY  +     +RNG G   +  E ++   +   +  G   
Sbjct: 292 LIAIILGDILILAVVSLLLYCYFWRNYAAKMRNGKGSKLLETEKIVYSSSPYPNQPGFER 351

Query: 311 GGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKVVLDGGDVVVVKRIRERK- 369
           G     MV FEG  +    + DLL++SAE+LGKG  G  YK VLD G+VV VKR+++   
Sbjct: 352 G----RMVFFEGVER--FELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDANV 405

Query: 370 -KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMP 428
             KRE+++ + V+G LRH N+VS ++Y   ++E  LVYDY+P+GSL  LLHG+RGPGR P
Sbjct: 406 GGKRELEQHMEVLGRLRHPNLVSFKSYYFAREEKLLVYDYMPNGSLFWLLHGNRGPGRTP 465

Query: 429 VDWNKRLKLASDSAKGLAFLHGYNKA-HLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT 487
           +DW  RLK+A+ +A+GLAF+H   KA  L HG++ S+NI++D+ GNA +SD G+  LF +
Sbjct: 466 LDWTTRLKIAAGAARGLAFMHNSCKALKLVHGNIKSTNILLDKAGNARVSDFGL-TLFAS 524

Query: 488 PFFINDA-----YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK--------- 533
               N A     Y APE   +       RK  Q+ DVYSFGV+LLEILTGK         
Sbjct: 525 S--TNSAPRSNGYRAPEATSDG------RKQTQKSDVYSFGVLLLEILTGKCPSIVDCGA 576

Query: 534 --MAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKD 591
                  G + + +WVQ + ++E   EVFD EL+  K++EEEM  LLQ+AL C  P P  
Sbjct: 577 GPGNGYGGPVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIALACTTPSPDH 636

Query: 592 RPNMSIVHRMIEDIR 606
           RP M  V RMIE+IR
Sbjct: 637 RPRMGHVVRMIEEIR 651

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434600|ref|XP_004135084.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400-like [Cucumis sativus]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 266/650 (40%), Positives = 379/650 (58%), Gaps = 72/650 (11%)

Query: 8   FFSFFCLFSLCLSNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPST 67
           F SF  L+  C+  S   D+  L++FKA+ +   + L++W ++++PC  +W GV+C    
Sbjct: 13  FVSF--LYFTCVYASSNIDLDALVAFKAA-SDKGNKLTTWNSTSNPC--AWDGVSC--LR 65

Query: 68  HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFT 127
            RV +LVLE+LDLTG    L+ LTQLR+LSLK N LS    +LS++  LK ++LS+N F+
Sbjct: 66  DRVSRLVLENLDLTGTIGPLTALTQLRVLSLKRNRLSGPIPDLSNFKALKLVFLSYNAFS 125

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSR 187
           G  P+ + SL  L R+DLSHN   GEIP + + RL +LLTLRLEDNRF+G +  +N  + 
Sbjct: 126 GNLPASLLSLVRLYRLDLSHNNLTGEIPAS-VNRLTHLLTLRLEDNRFSGPILELNLPN- 183

Query: 188 SILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPLPSDCSNRTVEPEQP------- 240
            + DFN+S N+LSG+IP  +S F  SSF  N  LCG PL S C +   +P +P       
Sbjct: 184 -LQDFNISENRLSGEIPKSLSAFPESSFGQNMGLCGSPLQS-CKSIVSKPTEPGSEGAIA 241

Query: 241 -----PR-----SRPRSSRVVTV-------------------IVIVIFDAVAILVAVVTV 271
                PR     S P S   VT                    ++ +I   V +L  V  +
Sbjct: 242 SPITPPRNLTVSSSPTSLPEVTAETKPENTHHHGTGKIGSLALIAIILGDVVVLALVSLL 301

Query: 272 TWCCYKRKRRSLRNGGGGVHKEVVMKRGNRKGDYGGARDGGDVEEMVMFEGCNKGFRNVG 331
            +C + +        G G  K +  ++         A+ G +   MV FEG  K    + 
Sbjct: 302 LYCYFWKNSADKAREGKGSSKLLESEKIVYSSSPYPAQAGTERGRMVFFEGVKK--FELE 359

Query: 332 DLLKSSAELLGKGCVGATYKVVLDGGDVVVVKRIRERK--KKREVDEWLRVIGGLRHSNI 389
           DLL++SAE+LGKG  G +YK +LD G+VV VKR+++ +   KRE ++ + V+G LRH+NI
Sbjct: 360 DLLRASAEMLGKGGFGTSYKAILDDGNVVAVKRLKDAQVGGKREFEQHMEVLGRLRHANI 419

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH 449
           VS+RAY   ++E  LVYDY+P+GSL  LLHG+RGPGR P+DW  RLK+A+ +A+GLAF+H
Sbjct: 420 VSLRAYYFAREEKLLVYDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGLAFIH 479

Query: 450 GYNKA-HLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFI-NDAYNAPELKFNNNNN 507
              K+  L HG++ S+N+++DQ GNA +SD G+  LF  P     + Y APE        
Sbjct: 480 NSCKSLKLAHGNVKSTNVLLDQSGNARVSDYGL-SLFTPPSTPRTNGYRAPECG------ 532

Query: 508 YSQRKFWQRCDVYSFGVVLLEILTGK-----------MAKGDGELGIVKWVQMMGQDESA 556
              RK  Q+ DVYSFGV+LLE+LTGK                  L + +WVQ + ++E  
Sbjct: 533 -DDRKLTQKSDVYSFGVLLLELLTGKCPSVVENGGPGGGGYGSVLDLPRWVQSVVREEWT 591

Query: 557 WEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR 606
            EVFD EL+  K++EEEM  LLQ+AL C A  P  RP M+ V +MI+++R
Sbjct: 592 AEVFDLELMRYKDIEEEMVGLLQIALACTAASPDQRPKMNHVVKMIDELR 641

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	640
TAIR|locus:2202359	670	AT1G68400 [Arabidopsis thalian	0.451	0.431	0.389	5.9e-78
TAIR|locus:2043858	658	AT2G26730 [Arabidopsis thalian	0.457	0.445	0.364	4.9e-65
TAIR|locus:2044913	672	AT2G36570 [Arabidopsis thalian	0.514	0.489	0.336	5.3e-65
TAIR|locus:2077898	640	AT3G08680 [Arabidopsis thalian	0.510	0.510	0.337	1.3e-60
TAIR|locus:2128414	638	AT4G23740 [Arabidopsis thalian	0.882	0.885	0.292	2.2e-59
TAIR|locus:2156784	640	RUL1 "REDUCED IN LATERAL GROWT	0.495	0.495	0.330	4e-59
TAIR|locus:2161308	654	AT5G58300 [Arabidopsis thalian	0.882	0.863	0.302	3.2e-58
TAIR|locus:2198090	655	RKL1 "receptor-like kinase 1"	0.471	0.461	0.331	4.7e-55
TAIR|locus:2036499	652	AT1G60630 [Arabidopsis thalian	0.420	0.412	0.335	3.2e-54
TAIR|locus:2088500	647	RLK902 "receptor-like kinase 9	0.45	0.445	0.334	4.9e-54

TAIR|locus:2202359 AT1G68400 [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 5.9e-78, Sum P(2) = 5.9e-78
 Identities = 121/311 (38%), Positives = 169/311 (54%)

Query:   312 GDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKXXXXXXXXXXXXXXXXXXXX 371
             GD  +MV FEG  + F  + DLL++SAE+LGKG  G  YK                    
Sbjct:   341 GDKGKMVFFEGTRR-FE-LEDLLRASAEMLGKGGFGTAYKAVLEDGNEVAVKRLKDAVTV 398

Query:   372 XXXDEW---LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMP 428
                 E+   + V+G LRH+N+VS++AY   ++E  LVYDY+P             PGR P
Sbjct:   399 AGKKEFEQQMEVLGRLRHTNLVSLKAYYFAREEKLLVYDYMPNGSLFWLLHGNRGPGRTP 458

Query:   429 VDWNKRLKLASDSAKGLAFLHGYNKA-HLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT 487
             +DW  RLK+A+ +A+GLAF+HG  K   L HG + S+N+++D+ GNA +SD G+  +F  
Sbjct:   459 LDWTTRLKIAAGAARGLAFIHGSCKTLKLTHGDIKSTNVLLDRSGNARVSDFGL-SIFAP 517

Query:   488 PFFI--NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK---MAK---GDG 539
                +  ++ Y APEL          RK  Q+ DVYSFGV+LLEILTGK   M +     G
Sbjct:   518 SQTVAKSNGYRAPEL-------IDGRKHTQKSDVYSFGVLLLEILTGKCPNMVETGHSGG 570

Query:   540 ELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRXXXXXXXXXXXXXPKDRPNMSIVH 599
              + + +WVQ + ++E   EVFD EL+  K++EEEM                 RP M  V 
Sbjct:   571 AVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMACTAVAADHRPKMGHVV 630

Query:   600 RMIEDIRTKGS 610
             ++IEDIR  GS
Sbjct:   631 KLIEDIRGGGS 641

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2043858 AT2G26730 [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.9e-65, Sum P(2) = 4.9e-65
 Identities = 114/313 (36%), Positives = 164/313 (52%)

Query:   311 GGDVE--EMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKXXXXXXXXXXXXXXXXX 368
             GG+ E  ++V  EG    F ++ DLL++SAE+LGKG VG +YK                 
Sbjct:   326 GGETERNKLVFTEGGVYSF-DLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDV 384

Query:   369 XXXXXXDEW-LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRM 427
                    E  + V+G ++H N++ +RAY   KDE  LV+D++P              GR 
Sbjct:   385 MASKKEFETQMEVVGKIKHPNVIPLRAYYYSKDEKLLVFDFMPTGSLSALLHGSRGSGRT 444

Query:   428 PVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT 487
             P+DW+ R+++A  +A+GLA LH    A L HG++ +SNI++    + C+SD G++QLF  
Sbjct:   445 PLDWDNRMRIAITAARGLAHLHV--SAKLVHGNIKASNILLHPNQDTCVSDYGLNQLFSN 502

Query:   488 PFFIND--AYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD--GELGI 543
                 N    Y+APE+          RK   + DVYSFGV+LLE+LTGK       GE GI
Sbjct:   503 SSPPNRLAGYHAPEV-------LETRKVTFKSDVYSFGVLLLELLTGKSPNQASLGEEGI 555

Query:   544 --VKWVQMMGQDESAWEVFDFELIMDKEMEEEMRXXXXXXXXXXXXXPKDRPNMSIVHRM 601
                +WV  + ++E   EVFD EL+    +EEEM              P  RP M  V RM
Sbjct:   556 DLPRWVLSVVREEWTAEVFDVELMRYHNIEEEMVQLLQIAMACVSTVPDQRPVMQEVLRM 615

Query:   602 IEDI-RTKGSIDG 613
             IED+ R++ + DG
Sbjct:   616 IEDVNRSETTDDG 628

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0040007 "growth" evidence=RCA

TAIR|locus:2044913 AT2G36570 [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 5.3e-65, Sum P(2) = 5.3e-65
 Identities = 124/369 (33%), Positives = 181/369 (49%)

Query:   273 WCCYKRKRRSLRNGGGGVHKEVVMK-RGNRKGDYG--GARDGG---DVEEMVMFEGCNKG 326
             +CC +  R   R+  G V    V    G R+  YG  G  D     D   +V FE   K 
Sbjct:   291 FCCGRLDRNGERSKSGSVETGFVGGGEGKRRSSYGEGGESDATSATDRSRLVFFER-RKQ 349

Query:   327 FRNVGDLLKSSAELLGKGCVGATYKXXXXXXXXXXXXXXXXXXX---XXXXDEWLRVIGG 383
             F  + DLLK+SAE+LGKG +G  YK                          ++++ +IG 
Sbjct:   350 FE-LDDLLKASAEMLGKGSLGTVYKAVLDDGSTTVAVKRLKDANPCPRKEFEQYMEIIGR 408

Query:   384 LRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLASDSAK 443
             L+H N+V +RAY   K+E  LVY+YLP             PGR+P+DW  R+ L   +A+
Sbjct:   409 LKHQNVVKLRAYYYAKEEKLLVYEYLPNGSLHSLLHGNRGPGRIPLDWTTRISLMLGAAR 468

Query:   444 GLAFLHG-YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFIN--DAYNAPEL 500
             GLA +H  Y+ + + HG++ SSN+++D+ G A I+D G+  L +    I     Y APE 
Sbjct:   469 GLAKIHDEYSISKIPHGNIKSSNVLLDRNGVALIADFGLSLLLNPVHAIARLGGYRAPEQ 528

Query:   501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK----------------MAKGDGELGIV 544
                       ++  Q+ DVYSFGV+LLE+LTGK                +A  + E  +V
Sbjct:   529 S-------EIKRLSQKADVYSFGVLLLEVLTGKAPSIFPSPSRPRSAASVAVEEEEEAVV 581

Query:   545 ---KWVQMMGQDESAWEVFDFELIMDKEMEEEMRXXXXXXXXXXXXXPKDRPNMSIVHRM 601
                KWV+ + ++E   EVFD EL+  K +EEEM              P+ RP M+ V +M
Sbjct:   582 DLPKWVRSVVKEEWTAEVFDPELLRYKNIEEEMVAMLHIGLACVVPQPEKRPTMAEVVKM 641

Query:   602 IEDIRTKGS 610
             +E+IR + S
Sbjct:   642 VEEIRVEQS 650

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2077898 AT3G08680 [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 1.3e-60, Sum P(2) = 1.3e-60
 Identities = 119/353 (33%), Positives = 171/353 (48%)

Query:   274 CCYKRKRRSLRNGGG---GVHKEVVMKRGNRKGDYGGARDGGDVEEMVMFEGCNKGFRNV 330
             CC K+     R+GG     V K    +  N+  ++G      +  ++V FEG +  F ++
Sbjct:   283 CCAKK-----RDGGQDSTAVPKAKPGRSDNKAEEFGSGVQEAEKNKLVFFEGSSYNF-DL 336

Query:   331 GDLLKSSAELLGKGCVGATYKXXXXXXXXXXXXXXXXXXXXXXX-DEWLRVIGGLR-HSN 388
              DLL++SAE+LGKG  G TYK                        ++ +  +G +  H N
Sbjct:   337 EDLLRASAEVLGKGSYGTTYKAILEEGTTVVVKRLKEVAAGKREFEQQMEAVGRISPHVN 396

Query:   389 IVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLASDSAKGLAFL 448
             +  +RAY   KDE  LVYDY                GR  +DW  RL++  ++A+G++ +
Sbjct:   397 VAPLRAYYFSKDEKLLVYDYYQGGNFSMLLHGNNEGGRAALDWETRLRICLEAARGISHI 456

Query:   449 HGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF--HTPFFIND-AYNAPELKFNNN 505
             H  + A L HG++ S N+++ Q  + C+SD G+  L   HT        Y APE      
Sbjct:   457 HSASGAKLLHGNIKSPNVLLTQELHVCVSDFGIAPLMSHHTLIPSRSLGYRAPEA----- 511

Query:   506 NNYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIV---KWVQMMGQDESAWEVFD 561
                  RK  Q+ DVYSFGV+LLE+LTGK A K  G   +V   KWVQ + ++E   EVFD
Sbjct:   512 --IETRKHTQKSDVYSFGVLLLEMLTGKAAGKTTGHEEVVDLPKWVQSVVREEWTGEVFD 569

Query:   562 FELIMDKE-MEEEMRXXXXXXXXXXXXXPKDRPNMSIVHRMIEDIRTKGSIDG 613
              ELI  +  +EEEM              P  RP+M  V  M+E+IR  GS  G
Sbjct:   570 VELIKQQHNVEEEMVQMLQIAMACVSKHPDSRPSMEEVVNMMEEIRPSGSGPG 622

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2128414 AT4G23740 [Arabidopsis thaliana (taxid:3702)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 177/605 (29%), Positives = 260/605 (42%)

Query:    21 NSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDL 80
             + P  D   LL F  ++   + SL+ W N T    + W GVTCN    R+I + L  + L
Sbjct:    24 SDPLEDKRALLEF-LTIMQPTRSLN-W-NETSQVCNIWTGVTCNQDGSRIIAVRLPGVGL 80

Query:    81 TG---PAEVXXXXXXXXXXXXXXXXXXXXXXXXXXWPHLKHLYLSHNRFTGTFPSGVSSL 137
              G   P  +                             L  LYL  N  +G  P   S  
Sbjct:    81 NGQIPPNTISRLSALRVLSLRSNLISGEFPKDFVELKDLAFLYLQDNNLSGPLPLDFSVW 140

Query:   138 RHLRRVDLSHNAYEGEIPMXXXXXXXXXXXXXXXDNRFTGTLYSVNSSSRSILDFNVSNN 197
             ++L  V+LS+N + G IP                +N  +G +  ++  S S+   ++SNN
Sbjct:   141 KNLTSVNLSNNGFNGTIP-SSLSRLKRIQSLNLANNTLSGDIPDLSVLS-SLQHIDLSNN 198

Query:   198 -QLSGQIPAWMSPFGGSSFAG--------NKNLCGRPLPSDCSNRTVEPEQXXXXXXXXX 248
               L+G IP W+  F  SS+ G        N  L   P PS+ +++  +P +         
Sbjct:   199 YDLAGPIPDWLRRFPFSSYTGIDIIPPGGNYTLVTPPPPSEQTHQ--KPSKARFLGLSET 256

Query:   249 XXXXXXXXXXXXXXXXXXXXXXXXWCCYKRKRRSLRNGGGGVHKEVVMKRGNRKGDYGGA 308
                                       CY R  R LR G G +    + K+G    +   +
Sbjct:   257 VFLLIVIAVSIVVITALAFVLTV---CYVR--RKLRRGDGVISDNKLQKKGGMSPEKFVS 311

Query:   309 RDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKXXXXXXXXXXXXXXXXX 368
             R       +  FEGCN  F ++ DLL++SAE+LGKG  G TYK                 
Sbjct:   312 RMEDVNNRLSFFEGCNYSF-DLEDLLRASAEVLGKGTFGTTYKAVLEDATSVAVKRLKDV 370

Query:   369 XXXXXX-DEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRM 427
                    ++ + +IGG++H N+V ++AY   KDE  +VYDY                 R+
Sbjct:   371 AAGKRDFEQQMEIIGGIKHENVVELKAYYYSKDEKLMVYDYFSRGSVASLLHGNRGENRI 430

Query:   428 PVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT 487
             P+DW  R+K+A  +AKG+A +H  N   L HG++ SSNI ++   N C+SD+G+  +   
Sbjct:   431 PLDWETRMKIAIGAAKGIARIHKENNGKLVHGNIKSSNIFLNSESNGCVSDLGLTAVMSP 490

Query:   488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM----AKGDGE 540
                P      Y APE+          RK  Q  DVYSFGVVLLE+LTGK       GD  
Sbjct:   491 LAPPISRQAGYRAPEVT-------DTRKSSQLSDVYSFGVVLLELLTGKSPIHTTAGDEI 543

Query:   541 LGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRXXXXXXXXXXXXXPKDRPNMSIVHR 600
             + +V+WV  + ++E   EVFD EL+    +EEEM                 RP MS + R
Sbjct:   544 IHLVRWVHSVVREEWTAEVFDIELLRYTNIEEEMVEMLQIAMSCVVKAADQRPKMSDLVR 603

Query:   601 MIEDI 605
             +IE++
Sbjct:   604 LIENV 608

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2156784 RUL1 "REDUCED IN LATERAL GROWTH1" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 4.0e-59, Sum P(2) = 4.0e-59
 Identities = 114/345 (33%), Positives = 167/345 (48%)

Query:   275 CYKRKRRSLRNGGGGVHKEVVMKRGNRKGDYGGARDGGDVEEMVMFEGCNKGFRNVGDLL 334
             C  +K +    GG GV  ++      +  D+G      +  ++  FE CN  F ++ DLL
Sbjct:   288 CLVKKTKKEEGGGEGVRTQMGGVNSKKPQDFGSGVQDPEKNKLFFFERCNHNF-DLEDLL 346

Query:   335 KSSAELLGKGCVGATYKXXXXXXXXXXXXXXXXXXXXXXX-DEWLRVIGGL-RHSNIVSI 392
             K+SAE+LGKG  G  YK                        ++ + ++G + +HSN V +
Sbjct:   347 KASAEVLGKGSFGTAYKAVLEDTTAVVVKRLREVVASKKEFEQQMEIVGKINQHSNFVPL 406

Query:   393 RAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
              AY   KDE  LVY Y+               G   VDW  R+K+A+ ++K +++LH   
Sbjct:   407 LAYYYSKDEKLLVYKYMTKGSLFGIMHGNR--GDRGVDWETRMKIATGTSKAISYLHSLK 464

Query:   453 KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF----HTPFFINDAYNAPELKFNNNNNY 508
                  HG + SSNI++ +    C+SD  +  LF    HTP  I   YNAPE+        
Sbjct:   465 ---FVHGDIKSSNILLTEDLEPCLSDTSLVTLFNLPTHTPRTIG--YNAPEV-------I 512

Query:   509 SQRKFWQRCDVYSFGVVLLEILTGKMA---KG-DGELGIV---KWVQMMGQDESAWEVFD 561
               R+  QR DVYSFGVV+LE+LTGK      G + E  ++   +WV+ + ++E   EVFD
Sbjct:   513 ETRRVSQRSDVYSFGVVILEMLTGKTPLTQPGLEDERVVIDLPRWVRSVVREEWTAEVFD 572

Query:   562 FELIMDKEMEEEMRXXXXXXXXXXXXXPKDRPNMSIVHRMIEDIR 606
              EL+  + +EEEM              P+ RP M  V RMIED+R
Sbjct:   573 VELLKFQNIEEEMVQMLQLALACVARNPESRPKMEEVARMIEDVR 617

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:2000605 "positive regulation of secondary growth" evidence=IMP

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2161308 AT5G58300 [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 184/609 (30%), Positives = 261/609 (42%)

Query:    25 SDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPA 84
             SD   LL+F ASV        +W NST+    SW GVTC      V  L L  + L GP 
Sbjct:    47 SDRQALLAFAASVPHLRRL--NW-NSTNHICKSWVGVTCTSDGTSVHALRLPGIGLLGPI 103

Query:    85 EVXXXXXXXXXXXXXXXXXXXXXXX---XXXWPHLKHLYLSHNRFTGTFPSGVSSLRHLR 141
                                             P L ++YL HN F+G  PS VS  R L 
Sbjct:   104 PPNTLGKLESLRILSLRSNLLSGNLPPDIHSLPSLDYIYLQHNNFSGEVPSFVS--RQLN 161

Query:   142 RVDLSHNAYEGEIPMXXXXXXXXXXXXXXXDNRFTGTLYSVNSSSRSILDFNVSNNQLSG 201
              +DLS N++ G+IP                +N+ +G +   N  + S+   N+SNN L+G
Sbjct:   162 ILDLSFNSFTGKIP-ATFQNLKQLTGLSLQNNKLSGPV--PNLDTVSLRRLNLSNNHLNG 218

Query:   202 QIPAWMSPFGGSSFAGNKNLCGRPL---------PS---DCSNRTVEPEQXXXXXXXXXX 249
              IP+ +  F  SSF+GN  LCG PL         PS     S   + P            
Sbjct:   219 SIPSALGGFPSSSFSGNTLLCGLPLQPCATSSPPPSLTPHISTPPLPPFPHKEGSKRKLH 278

Query:   250 XXXXXXXXXXXXXXXXXXXXXXXWCCYKRKRRSLRNGGGGVHKEVVMKRGNRKGDYGGAR 309
                                     CC K+K +  R       K +  K    K ++G   
Sbjct:   279 VSTIIPIAAGGAALLLLITVIILCCCIKKKDK--REDSIVKVKTLTEKA---KQEFGSGV 333

Query:   310 DGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKXXXXXXXXXXXXXXXXXX 369
                +  ++V F GC+  F ++ DLL++SAE+LGKG  G  YK                  
Sbjct:   334 QEPEKNKLVFFNGCSYNF-DLEDLLRASAEVLGKGSYGTAYKAVLEESTTVVVKRLKEVA 392

Query:   370 XXXXX-DEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRM 427
                   ++ + +I  +  H ++V +RAY   KDE  +V DY P               + 
Sbjct:   393 AGKREFEQQMEIISRVGNHPSVVPLRAYYYSKDEKLMVCDYYPAGNLSSLLHGNRGSEKT 452

Query:   428 PVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT 487
             P+DW+ R+K+   +AKG+A LH        HG++ SSN+++ Q  +ACISD G+  L   
Sbjct:   453 PLDWDSRVKITLSAAKGIAHLHAAGGPKFSHGNIKSSNVIMKQESDACISDFGLTPLMAV 512

Query:   488 PFF-INDA-YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA----KGDGEL 541
             P   +  A Y APE+          RK   + DVYSFGV++LE+LTGK        D  +
Sbjct:   513 PIAPMRGAGYRAPEVM-------ETRKHTHKSDVYSFGVLILEMLTGKSPVQSPSRDDMV 565

Query:   542 GIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRXXXXXXXXXXXXXPKDRPNMSIVHRM 601
              + +WVQ + ++E   EVFD EL+  + +EEEM              P+ RP M  V RM
Sbjct:   566 DLPRWVQSVVREEWTSEVFDIELMRFQNIEEEMVQMLQIAMACVAQVPEVRPTMDDVVRM 625

Query:   602 IEDIRTKGS 610
             IE+IR   S
Sbjct:   626 IEEIRVSDS 634

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2198090 RKL1 "receptor-like kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 4.7e-55, Sum P(2) = 4.7e-55
 Identities = 107/323 (33%), Positives = 158/323 (48%)

Query:   299 GNRKGDYGGARDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKXXXXXXX 358
             GN K   G   +G   +++V F    K F ++ DLL++SAE+LGKG  G  YK       
Sbjct:   339 GNGKASEG---NGPATKKLVFFGNATKVF-DLEDLLRASAEVLGKGTFGTAYKAVLDAVT 394

Query:   359 XXXXXXXXXXXXXXXX-DEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXX 417
                               E + ++G + H N+V +RAY   +DE  LVYD++P       
Sbjct:   395 VVAVKRLKDVMMADKEFKEKIELVGAMDHENLVPLRAYYFSRDEKLLVYDFMPMGSLSAL 454

Query:   418 XXXXXXPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACIS 477
                    GR P++W+ R ++A  +A+GL +LH    +   HG++ SSNI++ +  +A +S
Sbjct:   455 LHGNRGAGRSPLNWDVRSRIAIGAARGLDYLHSQGTS-TSHGNIKSSNILLTKSHDAKVS 513

Query:   478 DIGVHQLFHTPFFI-NDA--YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM 534
             D G+ QL  +     N A  Y APE+          ++  Q+ DVYSFGVVLLE++TGK 
Sbjct:   514 DFGLAQLVGSSATNPNRATGYRAPEVT-------DPKRVSQKGDVYSFGVVLLELITGKA 566

Query:   535 AKGD--GELGI--VKWVQMMGQDESAWEVFDFELIMDKEMEEEMRXXXXXXXXX-XXXXP 589
                    E G+   +WV+ + +DE   EVFD EL+     EEEM               P
Sbjct:   567 PSNSVMNEEGVDLPRWVKSVARDEWRREVFDSELLSLATDEEEMMAEMVQLGLECTSQHP 626

Query:   590 KDRPNMSIVHRMIEDIRTKGSID 612
               RP MS V R +E++R     D
Sbjct:   627 DQRPEMSEVVRKMENLRPYSGSD 649

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2036499 AT1G60630 [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 3.2e-54, Sum P(2) = 3.2e-54
 Identities = 97/289 (33%), Positives = 145/289 (50%)

Query:   332 DLLKSSAELLGKGCVGATYKXXXXXXXXXXXXXXXXXXXXXXXDEWLR---VIGGLRHSN 388
             DLLK+SAE LG+G +G+TYK                       DE+ R   ++G L+H N
Sbjct:   347 DLLKASAETLGRGTLGSTYKAVMESGFIITVKRLKDAGFPRM-DEFKRHIEILGRLKHPN 405

Query:   389 IVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGR-MPVDWNKRLKLASDSAKGLAF 447
             +V +RAY   K+E  LVYDY P              G   P+ W   LK+A D A GL +
Sbjct:   406 LVPLRAYFQAKEECLLVYDYFPNGSLFSLIHGSKVSGSGKPLHWTSCLKIAEDLAMGLVY 465

Query:   448 LHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNN 507
             +H      L HG+L SSN+++     +C++D G+  L H P+ I D  +A  L +     
Sbjct:   466 IH--QNPGLTHGNLKSSNVLLGPDFESCLTDYGLSDL-HDPYSIEDT-SAASLFYKAPEC 521

Query:   508 YSQRKF-WQRCDVYSFGVVLLEILTGKMAKGD--GELG--IVKWVQMMGQDESAWEVFDF 562
                RK   Q  DVYSFGV+LLE+LTG+ +  D   + G  I  WV+ + ++E+  EV + 
Sbjct:   522 RDLRKASTQPADVYSFGVLLLELLTGRTSFKDLVHKYGSDISTWVRAVREEET--EVSE- 578

Query:   563 ELIMDKEMEEEMRXXXXXXXXXXXXXPKDRPNMSIVHRMIEDIRTKGSI 611
             EL      EE+++             P++RP M  V +M++D R + ++
Sbjct:   579 EL---NASEEKLQALLTIATACVAVKPENRPAMREVLKMVKDARAEAAL 624

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2088500 RLK902 "receptor-like kinase 902" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 4.9e-54, Sum P(2) = 4.9e-54
 Identities = 103/308 (33%), Positives = 149/308 (48%)

Query:   314 VEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKXXXXXXXXXXXXXXXXXXXXXX 373
             ++++V F    K F ++ DLL++SAE+LGKG  G  YK                      
Sbjct:   345 MKKLVFFGNATKVF-DLEDLLRASAEVLGKGTFGTAYKAVLDAVTLVAVKRLKDVTMADR 403

Query:   374 X-DEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWN 432
                E + V+G + H N+V +RAY    DE  LVYD++P              GR P++W 
Sbjct:   404 EFKEKIEVVGAMDHENLVPLRAYYYSGDEKLLVYDFMPMGSLSALLHGNKGAGRPPLNWE 463

Query:   433 KRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFI- 491
              R  +A  +A+GL +LH  +     HG++ SSNI++    +A +SD G+ QL        
Sbjct:   464 VRSGIALGAARGLDYLHSQDPLSS-HGNVKSSNILLTNSHDARVSDFGLAQLVSASSTTP 522

Query:   492 NDA--YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD--GELG--IVK 545
             N A  Y APE+          R+  Q+ DVYSFGVVLLE+LTGK        E G  + +
Sbjct:   523 NRATGYRAPEVT-------DPRRVSQKADVYSFGVVLLELLTGKAPSNSVMNEEGMDLAR 575

Query:   546 WVQMMGQDESAWEVFDFELIMDK---EMEEEMRXXXXXXXXXXXXXPKDRPNMSIVHRMI 602
             WV  + ++E   EVFD EL+  +    +EEEM              P  RP M  V R I
Sbjct:   576 WVHSVAREEWRNEVFDSELMSIETVVSVEEEMAEMLQLGIDCTEQHPDKRPVMVEVVRRI 635

Query:   603 EDIRTKGS 610
             +++R  G+
Sbjct:   636 QELRQSGA 643

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M9C5	Y1680_ARATH	2, ., 7, ., 1, 1, ., 1	0.3978	0.9296	0.8880	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.11	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032204001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (608 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	640
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-37
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	4e-29
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	2e-26
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	7e-25
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	1e-23
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	1e-23
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	1e-23
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	2e-23
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-20
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	2e-17
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	7e-16
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	1e-15
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	3e-15
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	3e-15
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	3e-14
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	8e-14
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	2e-13
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	7e-13
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	8e-13
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	8e-13
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	3e-12
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	5e-12
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	6e-12
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	2e-11
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	3e-11
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	6e-11
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	6e-11
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	8e-11
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	9e-11
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	1e-10
PHA02988	283	PHA02988, PHA02988, hypothetical protein; Provisio	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	2e-10
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	3e-10
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	3e-10
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	3e-10
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	3e-10
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	3e-10
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	4e-10
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	4e-10
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	4e-10
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	4e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-10
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	5e-10
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	6e-10
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	6e-10
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	6e-10
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	1e-09
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	1e-09
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	1e-09
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	2e-09
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	2e-09
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	2e-09
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	2e-09
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	3e-09
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	3e-09
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	3e-09
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	4e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-09
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	8e-09
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	8e-09
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	8e-09
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	9e-09
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	1e-08
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	1e-08
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	1e-08
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	1e-08
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	2e-08
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	2e-08
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	2e-08
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	2e-08
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	3e-08
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	3e-08
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	3e-08
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	4e-08
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	4e-08
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	4e-08
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	4e-08
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	4e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-08
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	5e-08
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	6e-08
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	8e-08
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	9e-08
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	1e-07
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	1e-07
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	1e-07
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	1e-07
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	1e-07
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	2e-07
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	2e-07
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-07
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	4e-07
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	4e-07
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	5e-07
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	6e-07
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	6e-07
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	7e-07
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	9e-07
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	1e-06
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	1e-06
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	1e-06
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	1e-06
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	1e-06
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	2e-06
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	2e-06
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	2e-06
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-06
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	3e-06
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	3e-06
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	3e-06
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	3e-06
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	6e-06
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	6e-06
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	8e-06
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	8e-06
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	8e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-06
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	9e-06
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	9e-06
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	1e-05
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	1e-05
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	1e-05
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	1e-05
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	1e-05
cd05120	155	cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphot	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	2e-05
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	2e-05
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	2e-05
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	2e-05
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	3e-05
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	3e-05
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	4e-05
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	4e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-05
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	5e-05
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	6e-05
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	6e-05
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	6e-05
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	6e-05
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	7e-05
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	7e-05
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	9e-05
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	1e-04
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	1e-04
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	1e-04
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	1e-04
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	1e-04
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	2e-04
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	3e-04
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	3e-04
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	4e-04
cd05621	370	cd05621, STKc_ROCK2, Catalytic domain of the Prote	4e-04
cd05622	371	cd05622, STKc_ROCK1, Catalytic domain of the Prote	5e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-04
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	6e-04
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	6e-04
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	6e-04
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	7e-04
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	7e-04
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	7e-04
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
cd05087	269	cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t	0.001
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	0.001
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	0.001
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	0.001
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	0.002
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	0.002
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	0.002
cd05627	360	cd05627, STKc_NDR2, Catalytic domain of the Protei	0.002
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	0.002
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	0.003
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.004
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	0.004
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	0.004
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  148 bits (376), Expect = 2e-37
 Identities = 146/582 (25%), Positives = 235/582 (40%), Gaps = 107/582 (18%)

Query: 90  LTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNA 149
           +  L++LSL  N       +      L++L LS N+F+G  P  + SL  L ++ LS N 
Sbjct: 451 MPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK 510

Query: 150 YEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMS- 208
             GEIP  EL+    L++L L  N+ +G + +  S    +   ++S NQLSG+IP  +  
Sbjct: 511 LSGEIP-DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569

Query: 209 ------------------PFGG-------SSFAGNKNLCGRPLPSDCSNRTVEPEQPPRS 243
                             P  G       S+ AGN +LCG    S           PP  
Sbjct: 570 VESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGL---------PPCK 620

Query: 244 RPRSSRVVTVIVIVIFDAVAILVAVVTVTWCCYKRKRRSLRNGGGGVHKEVVMKRGNRKG 303
           R R +      +       A LV  +      + R R +L           + +  N  G
Sbjct: 621 RVRKTPSWWFYITCTL--GAFLVLALVAFGFVFIRGRNNLE----------LKRVENEDG 668

Query: 304 DYGGARDGGDVEEMVMFEGCNKGFRNVGDLLKSSAE--LLGKGCVGATYKVVLDGGDV-V 360
            +          E+  F+        + D+L S  E  ++ +G  GA+YK       +  
Sbjct: 669 TW----------ELQFFDSKVSKSITINDILSSLKEENVISRGKKGASYKGKSIKNGMQF 718

Query: 361 VVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHG 420
           VVK I +       +  +  +G L+H NIV +   C  +   +L+++Y+   +L  +L  
Sbjct: 719 VVKEINDVNSIPSSE--IADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRN 776

Query: 421 SRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIG 480
                   + W +R K+A   AK L FLH      +  G+LS   I++D      +  + 
Sbjct: 777 --------LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LS 827

Query: 481 VHQLFHTPF--FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD 538
           +  L  T    FI+ AY APE +         +   ++ D+Y FG++L+E+LTGK +  D
Sbjct: 828 LPGLLCTDTKCFISSAYVAPETR-------ETKDITEKSDIYGFGLILIELLTGK-SPAD 879

Query: 539 GELG----IVKWVQMMGQDESAWEVFDFELIMDKEM-EEEMRALLQVALLCLAPLPKDRP 593
            E G    IV+W +    D       D  +  D  + + E+  ++ +AL C A  P  RP
Sbjct: 880 AEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARP 939

Query: 594 NMSIVHRMIEDIRTKGSIDGCANSIMNNISSDSSPSQSENTY 635
                               CAN ++  + S S  S S  T 
Sbjct: 940 --------------------CANDVLKTLESASRSSSSCVTG 961

Length = 968

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  114 bits (288), Expect = 4e-29
 Identities = 54/200 (27%), Positives = 89/200 (44%), Gaps = 24/200 (12%)

Query: 341 LGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRAYC 396
           LG+G  G  Y       G  V +K I++      ++E LR   ++  L H NIV +    
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60

Query: 397 NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHL 456
             ++ L+LV +Y   GSL  LL  + G     +  ++ L++     +GL +LH      +
Sbjct: 61  EDENHLYLVMEYCEGGSLKDLLKENEG----KLSEDEILRILLQILEGLEYLH---SNGI 113

Query: 457 FHGHLSSSNIVVDQL-GNACISDIGVHQLFH------TPFFINDAYNAPELKFNNNNNYS 509
            H  L   NI++D   G   ++D G+ +L               AY APE+       YS
Sbjct: 114 IHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEV-LLGKGYYS 172

Query: 510 QRKFWQRCDVYSFGVVLLEI 529
                ++ D++S GV+L E+
Sbjct: 173 -----EKSDIWSLGVILYEL 187

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score =  108 bits (271), Expect = 2e-26
 Identities = 73/272 (26%), Positives = 113/272 (41%), Gaps = 40/272 (14%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEW----LRVIGGLRHSNIVSIR 393
             LG G  G  YK      G +V VK +++R +K + D+     +R++  L H NIV + 
Sbjct: 5   RKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVRLI 64

Query: 394 AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNK 453
                KD L+LV +Y   G L   L         P+  ++  K+A    +GL +LH    
Sbjct: 65  DAFEDKDHLYLVMEYCEGGDLFDYLSRGG-----PLSEDEAKKIALQILRGLEYLHSNG- 118

Query: 454 AHLFHGHLSSSNIVVDQLGNACISDIGV------HQLFHTPFFINDAYNAPELKFNNNNN 507
             + H  L   NI++D+ G   I+D G+           T F     Y APE+     N 
Sbjct: 119 --IIHRDLKPENILLDENGVVKIADFGLAKKLLKSSSSLTTFVGTPWYMAPEV-LLGGNG 175

Query: 508 YSQRKFWQRCDVYSFGVVLLEILTGKM----AKGDGELGIVKWVQMMGQDESAWEVFDFE 563
           Y       + DV+S GV+L E+LTGK          +L +++ + +    E     +   
Sbjct: 176 YG-----PKVDVWSLGVILYELLTGKPPFSGENILDQLQLIRRI-LGPPLEFDEPKWS-- 227

Query: 564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNM 595
                   EE + L++    CL   P  RP  
Sbjct: 228 -----SGSEEAKDLIKK---CLNKDPSKRPTA 251

Length = 260

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score =  104 bits (261), Expect = 7e-25
 Identities = 79/293 (26%), Positives = 122/293 (41%), Gaps = 68/293 (23%)

Query: 339 ELLGKGCVG----ATYKVVLDGGDV-VVVKRIRERKKKREVDEWLR---VIGGLRHSNIV 390
           + LG+G  G     T K   +G +  V VK ++E   + E +E+L    ++  L H NIV
Sbjct: 5   KKLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIV 64

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
            +   C   + L++V +Y+P G L   L          +     L++A   AKG+ +L  
Sbjct: 65  RLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGE----KLTLKDLLQMALQIAKGMEYLE- 119

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN-------------A 497
            +K +  H  L++ N +V +     ISD G+     +     D Y              A
Sbjct: 120 -SK-NFVHRDLAARNCLVTENLVVKISDFGL-----SRDIYEDDYYRKRGGGKLPIKWMA 172

Query: 498 PE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESA 556
           PE LK          KF  + DV+SFGV+L EI T         LG   +  M  +    
Sbjct: 173 PESLKD--------GKFTSKSDVWSFGVLLWEIFT---------LGEQPYPGMSNE---- 211

Query: 557 WEVFDFELIMDKE-ME------EEMRALLQVALLCLAPLPKDRPNMSIVHRMI 602
            EV   EL+ D   +       +E+  L+   L C A  P+DRP  S +   +
Sbjct: 212 -EV--LELLEDGYRLPRPENCPDELYELM---LQCWAYDPEDRPTFSELVEDL 258

Length = 258

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  100 bits (251), Expect = 1e-23
 Identities = 65/265 (24%), Positives = 110/265 (41%), Gaps = 36/265 (13%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRA 394
           E LG+G  G  Y       G +V +K I+++K K++ +  LR   ++  L+H NIV +  
Sbjct: 5   EKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIVRLYD 64

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA 454
               +D+L+LV +Y   G L  LL      GR+  D  +           L +LH     
Sbjct: 65  VFEDEDKLYLVMEYCEGGDLFDLLKKR---GRLSEDEAR--FYLRQILSALEYLHSKGIV 119

Query: 455 HLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFIND-----AYNAPELKFNNNNNYS 509
           H     L   NI++D+ G+  ++D G+ +       +        Y APE+         
Sbjct: 120 HR---DLKPENILLDEDGHVKLADFGLARQLDPGEKLTTFVGTPEYMAPEV-------LL 169

Query: 510 QRKFWQRCDVYSFGVVLLEILTGKM-AKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK 568
            + + +  D++S GV+L E+LTGK    GD +L  +       +       +D       
Sbjct: 170 GKGYGKAVDIWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPPFPPPEWDI------ 223

Query: 569 EMEEEMRALLQVALLCLAPLPKDRP 593
               E + L++     L   P+ R 
Sbjct: 224 --SPEAKDLIR---KLLVKDPEKRL 243

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score =  100 bits (251), Expect = 1e-23
 Identities = 78/297 (26%), Positives = 119/297 (40%), Gaps = 67/297 (22%)

Query: 339 ELLGKGCVGATYKVVLDGGD----VVVVKRIRERKKKREVDEWL---RVIGGLRHSNIVS 391
           + LG+G  G  YK  L G D     V VK ++E   + E  ++L   RV+  L H N+V 
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVR 60

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRG----PGRMPVDWNKRLKLASDSAKGLAF 447
           +   C  ++ L+LV +Y+  G L   L  SR     P +  +     L  A   AKG+ +
Sbjct: 61  LLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEY 120

Query: 448 LHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN----------- 496
           L         H  L++ N +V +     ISD G+     +    +D Y            
Sbjct: 121 LA---SKKFVHRDLAARNCLVGEDLVVKISDFGL-----SRDVYDDDYYRKKTGGKLPIR 172

Query: 497 --APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQD 553
             APE LK     + S        DV+SFGV+L EI T         LG   +  +    
Sbjct: 173 WMAPESLKDGIFTSKS--------DVWSFGVLLWEIFT---------LGATPYPGL---- 211

Query: 554 ESAWEVFDFELIMD-------KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIE 603
            S  EV ++  +         +   +E+  L+     C    P+DRP  S +   +E
Sbjct: 212 -SNEEVLEY--LRKGYRLPKPEYCPDELYELML---SCWQLDPEDRPTFSELVERLE 262

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score =   99 bits (250), Expect = 1e-23
 Identities = 72/286 (25%), Positives = 119/286 (41%), Gaps = 55/286 (19%)

Query: 339 ELLGKGCVG----ATYKVVLDGGDV-VVVKRIRERKKKREVDEWLR---VIGGLRHSNIV 390
           + LG+G  G       K       V V VK ++E   +++++E+LR   ++  L H N+V
Sbjct: 5   KKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVV 64

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
            +   C  ++ L++V +Y+  G L S L  +R      +  +  L  A   A+G+ +L  
Sbjct: 65  KLLGVCTEEEPLYIVMEYMEGGDLLSYLRKNRPK----LSLSDLLSFALQIARGMEYLE- 119

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIG---------VHQLFHTPFFINDAYNAPE-L 500
               +  H  L++ N +V +     ISD G          ++       I   + APE L
Sbjct: 120 --SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYRKRGGKLPI--RWMAPESL 175

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVF 560
           K          KF  + DV+SFGV+L EI T         LG   +  M  +     EV 
Sbjct: 176 KE--------GKFTSKSDVWSFGVLLWEIFT---------LGEQPYPGMSNE-----EV- 212

Query: 561 DFELIMDKEMEEEMR----ALLQVALLCLAPLPKDRPNMSIVHRMI 602
             E + +     +       L  + L C A  P+DRP  S +  ++
Sbjct: 213 -LEYLKNGYRLPQPPNCPPELYDLMLQCWAEDPEDRPTFSELVEIL 257

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 99.5 bits (249), Expect = 2e-23
 Identities = 77/293 (26%), Positives = 122/293 (41%), Gaps = 68/293 (23%)

Query: 339 ELLGKGCVG----ATYKVVLDGGDVVV-VKRIRERKKKREVDEWLR---VIGGLRHSNIV 390
           + LG+G  G     T K   DG +V V VK ++E   +++++E+LR   ++  L H NIV
Sbjct: 5   KKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNIV 64

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
            +   C  ++ L +V +Y+P G L   L  +R      +  +  L  A   A+G+ +L  
Sbjct: 65  KLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKE---LSLSDLLSFALQIARGMEYLE- 120

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIG----VHQLFHTPFFINDAYN---------- 496
               +  H  L++ N +V +     ISD G    ++         +D Y           
Sbjct: 121 --SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLY---------DDDYYKVKGGKLPIR 169

Query: 497 --APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQD 553
             APE LK          KF  + DV+SFGV+L EI T         LG   +  M    
Sbjct: 170 WMAPESLKE--------GKFTSKSDVWSFGVLLWEIFT---------LGEEPYPGMSNA- 211

Query: 554 ESAWEVFDFELIMDKEMEEEMR----ALLQVALLCLAPLPKDRPNMSIVHRMI 602
               EV   E +       +       L ++ L C A  P+DRP  S +  ++
Sbjct: 212 ----EV--LEYLKKGYRLPKPPNCPPELYKLMLQCWAEDPEDRPTFSELVEIL 258

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 93.8 bits (233), Expect = 9e-20
 Identities = 71/206 (34%), Positives = 110/206 (53%), Gaps = 16/206 (7%)

Query: 6   IFFFSFFCLFSLCLSNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNP 65
              F  F LF L  S     ++  LLSFK+S+      LS+W +S D C   W+G+TCN 
Sbjct: 11  YLIFMLFFLF-LNFSMLHAEELELLLSFKSSINDPLKYLSNWNSSADVC--LWQGITCNN 67

Query: 66  STHRVIKLVLEDLDLTGP-AEVLSRLTQLRLLSLKNNLLSS---SNLNLSSWPHLKHLYL 121
           S+ RV+ + L   +++G  +  + RL  ++ ++L NN LS     ++  +S   L++L L
Sbjct: 68  SS-RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSS-LRYLNL 125

Query: 122 SHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTL-- 179
           S+N FTG+ P G  S+ +L  +DLS+N   GEIP  ++    +L  L L  N   G +  
Sbjct: 126 SNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIPN 182

Query: 180 YSVNSSSRSILDFNVSNNQLSGQIPA 205
              N +S   L   +++NQL GQIP 
Sbjct: 183 SLTNLTSLEFL--TLASNQLVGQIPR 206

Length = 968

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 84.8 bits (208), Expect = 2e-17
 Identities = 58/279 (20%), Positives = 105/279 (37%), Gaps = 35/279 (12%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRER--KKKREVDEWLRVIGGLR----HSNIVSI 392
             LG+G  G  Y        +V +K + ++   K +EV+ +LR I  L       NIV +
Sbjct: 6   RKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKL 63

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
             +   +  L+LV +Y+  GSL  LL      G +         + +     L +LH   
Sbjct: 64  YDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEAL--FILAQILSALEYLH--- 118

Query: 453 KAHLFHGHLSSSNIVVDQLGNAC-ISDIGV------------HQLFHTPFFINDAYNAPE 499
              + H  +   NI++D+ G    + D G+                 +       Y APE
Sbjct: 119 SKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPE 178

Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK--MAKGDGELGIVKWVQMMGQDESAW 557
           +    +  Y+        D++S G+ L E+LTG              + ++++ +  +  
Sbjct: 179 VLLGLSLAYASS----SSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPS 234

Query: 558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMS 596
                     + + +    LL+     LA  PK+R + S
Sbjct: 235 LASPLSPSNPELISKAASDLLKK---LLAKDPKNRLSSS 270

Length = 384

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 77.9 bits (192), Expect = 7e-16
 Identities = 81/302 (26%), Positives = 127/302 (42%), Gaps = 61/302 (20%)

Query: 339 ELLGKGCVGATYKVVLD-----GGDVVVVKRIRERKKK--REVDEWLRVIGGLRHSNIVS 391
           + LGKG  G+      D      G+VV VK+++    +  R+ +  + ++  L+H NIV 
Sbjct: 10  QQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVK 69

Query: 392 IRAYC--NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH 449
            +  C   G+  L LV +YLP+GSL   L   R      +D  K L  AS   KG+ +L 
Sbjct: 70  YKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRER----LDHRKLLLYASQICKGMEYLG 125

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF-------------HTPFFINDAYN 496
                   H  L++ NI+V+      I D G+ ++               +P F    + 
Sbjct: 126 S---KRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIF----WY 178

Query: 497 APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT--GKMAKGDGELGIVKWVQMMGQDE 554
           APE       + ++ KF    DV+SFGVVL E+ T   K      E     +++MMG D+
Sbjct: 179 APE-------SLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAE-----FMRMMGNDK 226

Query: 555 SAWEVFDFELIMDKEMEEEMRALLQ----------VALLCLAPLPKDRPNMSIVHRMIED 604
               +  + LI   E+ +    L            +   C    P  RP+ S +   +E 
Sbjct: 227 QGQMIV-YHLI---ELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEA 282

Query: 605 IR 606
           IR
Sbjct: 283 IR 284

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 76.8 bits (189), Expect = 1e-15
 Identities = 59/225 (26%), Positives = 101/225 (44%), Gaps = 38/225 (16%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRI--------RERKKKREVDEWLR----VIGGLR 385
           EL+GKG  G  Y  + +  G+++ VK++        R   +++++ + LR     +  L 
Sbjct: 7   ELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLD 66

Query: 386 HSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGL 445
           H NIV    +   ++ L +  +Y+P GS+ S L   R  GR      +         +GL
Sbjct: 67  HLNIVQYLGFETTEEYLSIFLEYVPGGSIGSCL---RTYGRFEEQLVR--FFTEQVLEGL 121

Query: 446 AFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-FFINDAYN-------- 496
           A+LH      + H  L + N++VD  G   ISD G+ +   +   + ND           
Sbjct: 122 AYLHSKG---ILHRDLKADNLLVDADGICKISDFGISK--KSDDIYDNDQNMSMQGSVFW 176

Query: 497 -APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGE 540
            APE+  + +  YS      + D++S G V+LE+  G+    D E
Sbjct: 177 MAPEVIHSYSQGYS-----AKVDIWSLGCVVLEMFAGRRPWSDEE 216

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 76.3 bits (188), Expect = 3e-15
 Identities = 76/298 (25%), Positives = 123/298 (41%), Gaps = 57/298 (19%)

Query: 341 LGKGCVGATYKVVLD-----GGDVVVVKRIRERKKKREVDEWLRVIGGLR---HSNIVSI 392
           LG+G  G       D      G+ V VK +    +++   ++ R I  LR   H NIV  
Sbjct: 12  LGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKY 71

Query: 393 RAYC--NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
           +  C   G   L L+ +YLP GSL   L   R      ++  + L  +S   KG+ +L  
Sbjct: 72  KGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQ----INLKRLLLFSSQICKGMDYLG- 126

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-------------PFFINDAYNA 497
                  H  L++ NI+V+      ISD G+ ++                P F    + A
Sbjct: 127 --SQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIF----WYA 180

Query: 498 PELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQDESA 556
           PE            KF    DV+SFGV L E+ T     GD       ++++M+G  +  
Sbjct: 181 PE-------CLRTSKFSSASDVWSFGVTLYELFT----YGDPSQSPPAEFLRMIGIAQGQ 229

Query: 557 WEVFDF-ELIMDKE-------MEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR 606
             V    EL+ + E         +E+  L++   LC    P+DRP+ + +  +++ +R
Sbjct: 230 MIVTRLLELLKEGERLPRPPSCPDEVYDLMK---LCWEAEPQDRPSFADLILIVDRLR 284

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 75.6 bits (186), Expect = 3e-15
 Identities = 70/276 (25%), Positives = 118/276 (42%), Gaps = 37/276 (13%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAY 395
           E +GKG  G  YK VL G   V VK  R       KR+  +   ++    H NIV +   
Sbjct: 1   EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGV 60

Query: 396 CNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAH 455
           C  K  +++V + +P GSL + L   +   R+ V   K L+++ D+A G+ +L   N   
Sbjct: 61  CVQKQPIYIVMELVPGGSLLTFLRKKK--NRLTV--KKLLQMSLDAAAGMEYLESKN--- 113

Query: 456 LFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFF--------INDAYNAPELKFNNNNN 507
             H  L++ N +V +     ISD G+ +      +        I   + APE       N
Sbjct: 114 CIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEAL-----N 168

Query: 508 YSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD 567
           Y   ++    DV+S+G++L E  +         LG   +  M  Q         + +   
Sbjct: 169 YG--RYTSESDVWSYGILLWETFS---------LGDTPYPGMSNQQTRERIESGYRMPAP 217

Query: 568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIE 603
           +   EE+  L+     C A  P++RP+ S ++  ++
Sbjct: 218 QLCPEEIYRLML---QCWAYDPENRPSFSEIYNELQ 250

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 72.9 bits (179), Expect = 3e-14
 Identities = 46/198 (23%), Positives = 100/198 (50%), Gaps = 12/198 (6%)

Query: 341 LGKGCVGATYKVVLDGGDVVVVKRIR--ERKKKREVDEWLRVIGGLRHSNIVSIRAYCNG 398
           LG G  G  ++ +      V +K ++  +  K+++  + ++ +  LRH +++S+ A C+ 
Sbjct: 14  LGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSV 73

Query: 399 KDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFH 458
            + ++++ + +  GSL + L   R P    +     + +A   A+G+A+L    + +  H
Sbjct: 74  GEPVYIITELMEKGSLLAFL---RSPEGQVLPVASLIDMACQVAEGMAYLE---EQNSIH 127

Query: 459 GHLSSSNIVVDQLGNAC-ISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRC 517
             L++ NI+V +    C ++D G+ +L     +++     P  K+      S   F  + 
Sbjct: 128 RDLAARNILVGE-DLVCKVADFGLARLIKEDVYLSSDKKIP-YKWTAPEAASHGTFSTKS 185

Query: 518 DVYSFGVVLLEILT-GKM 534
           DV+SFG++L E+ T G++
Sbjct: 186 DVWSFGILLYEMFTYGQV 203

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 71.4 bits (175), Expect = 8e-14
 Identities = 62/213 (29%), Positives = 92/213 (43%), Gaps = 38/213 (17%)

Query: 339 ELLGKGCVGATYKVVL-DGGDVVVVKRIR----ERKKKREVDEWLRVIGGLRHSNIVSIR 393
             +GKG  G  +KVV      V  +K+I      R+++ E  +  RV+  L  S I+   
Sbjct: 6   NKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYY 65

Query: 394 AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVD--WNKRLKLASDSAKGLAFLHGY 451
                K +L +V +Y  +G LH LL   RG   +P D  W    +       GLA LH  
Sbjct: 66  ESFLDKGKLNIVMEYAENGDLHKLLKMQRGR-PLPEDQVW----RFFIQILLGLAHLH-- 118

Query: 452 NKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----------TPFFINDAYNAPEL 500
               + H  + S N+ +D   N  I D+GV +L             TP+     Y +PEL
Sbjct: 119 -SKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPY-----YLSPEL 172

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
                     + + ++ DV++ GVVL E  TGK
Sbjct: 173 -------CEDKPYNEKSDVWALGVVLYECCTGK 198

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 54/199 (27%), Positives = 99/199 (49%), Gaps = 21/199 (10%)

Query: 341 LGKGCVGATYKVVLDGGDVVVVKRIRERKKKRE--VDEWLRVIGGLRHSNIVSIRAYCNG 398
           LG G  G  +    +G   V VK ++      E  + E  +++  LRH  +V + A C+ 
Sbjct: 14  LGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQE-AQIMKKLRHDKLVQLYAVCSE 72

Query: 399 KDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFH 458
           ++ +++V +Y+  GSL   L    G G+  +   + + +A+  A+G+A+L      +  H
Sbjct: 73  EEPIYIVTEYMSKGSLLDFLKS--GEGKK-LRLPQLVDMAAQIAEGMAYLE---SRNYIH 126

Query: 459 GHLSSSNIVVDQLGNAC-ISDIGVHQLFHTPFFINDAYNAPE-----LKFNNNNNYSQRK 512
             L++ NI+V +    C I+D G+ +L       +D Y A E     +K+      +  +
Sbjct: 127 RDLAARNILVGE-NLVCKIADFGLARLIE-----DDEYTAREGAKFPIKWTAPEAANYGR 180

Query: 513 FWQRCDVYSFGVVLLEILT 531
           F  + DV+SFG++L EI+T
Sbjct: 181 FTIKSDVWSFGILLTEIVT 199

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 68.7 bits (169), Expect = 7e-13
 Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 40/215 (18%)

Query: 339 ELLGKGCVGATYK-VVLDGGDVVVVKRIRERKKKREVDEWL----RVIGGLRHSNIVSIR 393
           ELLG+G  G+ Y  +  D G+++ VK +       E  E L    R++  L+H NIV   
Sbjct: 6   ELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYY 65

Query: 394 AYC--NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY 451
                  K+ L +  +Y+  GSL SLL    G    PV    R K      +GLA+LH  
Sbjct: 66  GSERDEEKNTLNIFLEYVSGGSLSSLLK-KFGKLPEPV---IR-KYTRQILEGLAYLH-- 118

Query: 452 NKAHLFHGHLSSSNIVVDQLGNACISDIGV-------------HQLFHTPFFINDAYNAP 498
               + H  +  +NI+VD  G   ++D G                +  TP+++     AP
Sbjct: 119 -SNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWM-----AP 172

Query: 499 ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           E+       Y  R      D++S G  ++E+ TGK
Sbjct: 173 EVI--RGEEYG-RA----ADIWSLGCTVIEMATGK 200

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 68.8 bits (169), Expect = 8e-13
 Identities = 65/273 (23%), Positives = 106/273 (38%), Gaps = 53/273 (19%)

Query: 341 LGKGCVGATYKVVLDG-GDVVVVKRI----RERKKK---REVDEWLRVIGGLRHSNIVSI 392
           LG+G  G  YKV     G +  +K+I     E  +K   RE+              +V  
Sbjct: 9   LGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSC----ESPYVVKC 64

Query: 393 R-AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRL--KLASDSAKGLAFLH 449
             A+   + E+ +V +Y+  GSL  LL    G         + +   +A    KGL +LH
Sbjct: 65  YGAFYK-EGEISIVLEYMDGGSLADLL-KKVGK------IPEPVLAYIARQILKGLDYLH 116

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFIND------AYNAPELKFN 503
              K H+ H  +  SN++++  G   I+D G+ ++        +       Y +PE +  
Sbjct: 117 --TKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPE-RIQ 173

Query: 504 NNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQDESAWEVFDF 562
             + YS        D++S G+ LLE   GK      G+     + ++M        + D 
Sbjct: 174 GES-YSYA-----ADIWSLGLTLLECALGKFPFLPPGQPS---FFELMQA------ICDG 218

Query: 563 ELI--MDKEMEEEMRALLQVALLCLAPLPKDRP 593
                  +E   E R  +     CL   PK RP
Sbjct: 219 PPPSLPAEEFSPEFRDFIS---ACLQKDPKKRP 248

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 68.8 bits (168), Expect = 8e-13
 Identities = 50/256 (19%), Positives = 97/256 (37%), Gaps = 26/256 (10%)

Query: 360 VVVKRIRERKKKREVDEWLRVIG---GLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS 416
           VVVK +R      E   +L+ +     L H N++     C       LV ++ P G L +
Sbjct: 25  VVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGDLKN 84

Query: 417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACI 476
            L  +RG        +   ++A + A GL +LH   +A   H  L+  N  +    +  I
Sbjct: 85  YLRSNRGMVAQMAQKDVLQRMACEVASGLLWLH---QADFIHSDLALRNCQLTADLSVKI 141

Query: 477 SDIGV-HQLFHTPFFINDA-------YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLE 528
            D G+  + +   ++I          + APEL      +   +   ++ +++S GV + E
Sbjct: 142 GDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWE 201

Query: 529 ILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRA--LLQVALLCLA 586
           +                +  +  +      V + ++ + K   +   +    +V   C  
Sbjct: 202 LF---------TAADQPYPDLSDEQVLKQVVREQDIKLPKPQLDLKYSDRWYEVMQFCWL 252

Query: 587 PLPKDRPNMSIVHRMI 602
             P+ RP    VH ++
Sbjct: 253 D-PETRPTAEEVHELL 267

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 66.8 bits (164), Expect = 3e-12
 Identities = 66/281 (23%), Positives = 114/281 (40%), Gaps = 69/281 (24%)

Query: 339 ELLGKGCVGATYKV--VLDGGDVVVVKRIRERKKKREVDEWLRVIGGLR---HSNIVSIR 393
           E +GKG  G  YK      G   V +K I+   K+++ ++ +  I  L+   H NIV   
Sbjct: 6   EKIGKGGFGEVYKARHKRTG-KEVAIKVIKLESKEKK-EKIINEIQILKKCKHPNIVKY- 62

Query: 394 AYCN--GKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSA------KGL 445
            Y +   KDEL++V ++   GSL  LL             N+ L  +  +       KGL
Sbjct: 63  -YGSYLKKDELWIVMEFCSGGSLKDLLKS----------TNQTLTESQIAYVCKELLKGL 111

Query: 446 AFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV----------HQLFHTPFFINDAY 495
            +LH     H     + ++NI++   G   + D G+          + +  TP+++    
Sbjct: 112 EYLHSNGIIH---RDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWM---- 164

Query: 496 NAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD---GELGIVKWVQMMGQ 552
            APE+   N   Y  +      D++S G+  +E     +A+G     EL  +K +  +  
Sbjct: 165 -APEVI--NGKPYDYK-----ADIWSLGITAIE-----LAEGKPPYSELPPMKALFKIAT 211

Query: 553 DESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRP 593
           +          L   ++  +E +  L     CL   P+ RP
Sbjct: 212 NGP------PGLRNPEKWSDEFKDFL---KKCLQKNPEKRP 243

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 66.3 bits (162), Expect = 5e-12
 Identities = 53/207 (25%), Positives = 101/207 (48%), Gaps = 30/207 (14%)

Query: 341 LGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRAYCN 397
           LG G  G  ++ + +    V VK ++      +  ++L    ++  LRH  ++ + A C 
Sbjct: 14  LGAGQFGEVWEGLWNNTTPVAVKTLK--PGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCT 71

Query: 398 GKDELFLVYDYLPHGSLHSLLHGSRGPG-RMPVDWNKRLKLASDSAKGLAFLHGYNKAHL 456
            ++ +++V + + +GSL   L G  G   ++P    + + +A+  A G+A+L   N    
Sbjct: 72  LEEPIYIVTELMKYGSLLEYLQGGAGRALKLP----QLIDMAAQVASGMAYLEAQN---Y 124

Query: 457 FHGHLSSSNIVVDQLGNAC-ISDIGVHQLFHTPFFINDAYNA-PELKF------NNNNNY 508
            H  L++ N++V +  N C ++D G+ ++        D Y A    KF           Y
Sbjct: 125 IHRDLAARNVLVGE-NNICKVADFGLARV-----IKEDIYEAREGAKFPIKWTAPEAALY 178

Query: 509 SQRKFWQRCDVYSFGVVLLEILT-GKM 534
           +  +F  + DV+SFG++L EI+T G+M
Sbjct: 179 N--RFSIKSDVWSFGILLTEIVTYGRM 203

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 66.0 bits (161), Expect = 6e-12
 Identities = 67/280 (23%), Positives = 123/280 (43%), Gaps = 46/280 (16%)

Query: 341 LGKGCVGATYKVVLDG-GDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRAYC 396
           LG G  G  Y+ V       V VK ++E     EV+E+L+   V+  ++H N+V +   C
Sbjct: 14  LGGGQYGEVYEGVWKKYSLTVAVKTLKE--DTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 71

Query: 397 NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHL 456
             +   +++ +++ +G+L   L   R   R  V+    L +A+  +  + +L    K + 
Sbjct: 72  TREPPFYIITEFMTYGNLLDYL---RECNRQEVNAVVLLYMATQISSAMEYLE---KKNF 125

Query: 457 FHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE-----LKFNNNNNYSQR 511
            H  L++ N +V +     ++D G+ +L        D Y A       +K+    + +  
Sbjct: 126 IHRDLAARNCLVGENHLVKVADFGLSRLMT-----GDTYTAHAGAKFPIKWTAPESLAYN 180

Query: 512 KFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK--- 568
           KF  + DV++FGV+L EI T  M+   G    +   Q+    E  +        M++   
Sbjct: 181 KFSIKSDVWAFGVLLWEIATYGMSPYPG----IDLSQVYELLEKGYR-------MERPEG 229

Query: 569 ---EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
              ++ E MRA       C    P DRP+ + +H+  E +
Sbjct: 230 CPPKVYELMRA-------CWQWNPSDRPSFAEIHQAFETM 262

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 53/221 (23%), Positives = 85/221 (38%), Gaps = 42/221 (19%)

Query: 339 ELLGKGCVGATYK---VVLDGGDVVVVKRIRERKKKREVDEW------LRVIGGLRHSNI 389
           E LG+G  G  YK      +         I+  K+  E            ++  L+H NI
Sbjct: 11  EELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNI 70

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLL-----------HGSRGPGRMPVDWNKRLKLA 438
           V +   C  +    ++++YL HG LH  L                  +  +D +  L +A
Sbjct: 71  VCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIA 130

Query: 439 SDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAP 498
              A G+ +L  +   H  H  L++ N +V +     ISD G+ +         D Y+A 
Sbjct: 131 IQIAAGMEYLSSH---HFVHRDLAARNCLVGEGLTVKISDFGLSR---------DIYSAD 178

Query: 499 ELKFNNNNNYSQR----------KFWQRCDVYSFGVVLLEI 529
             +  + +    R          KF    D++SFGVVL EI
Sbjct: 179 YYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEI 219

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 26/208 (12%)

Query: 329 NVGDLLKSSAELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWL---RVIGGLR 385
           N  +L       +GKG  G        G   V VK +++         +L    V+  LR
Sbjct: 4   NSKELKLG--ATIGKGEFGDVMLGDYRG-QKVAVKCLKDDSTA--AQAFLAEASVMTTLR 58

Query: 386 HSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGL 445
           H N+V +       + L++V +Y+  GSL   L   R  GR  +   ++L  A D  +G+
Sbjct: 59  HPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYL---RSRGRAVITLAQQLGFALDVCEGM 115

Query: 446 AFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV---HQLFHTPFFINDAYNAPE-LK 501
            +L   N     H  L++ N++V +   A +SD G+            +   + APE L+
Sbjct: 116 EYLEEKN---FVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGKLPVKWTAPEALR 172

Query: 502 FNNNNNYSQRKFWQRCDVYSFGVVLLEI 529
                     KF  + DV+SFG++L EI
Sbjct: 173 EK--------KFSTKSDVWSFGILLWEI 192

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 63.5 bits (154), Expect = 6e-11
 Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 24/190 (12%)

Query: 359 VVVVKRIRERKKKREVD-----EWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS 413
           +V VK ++E  +    D     E L V   L+H +IV     C     L +V++Y+ HG 
Sbjct: 37  LVAVKALKEASESARQDFQREAELLTV---LQHQHIVRFYGVCTEGRPLLMVFEYMRHGD 93

Query: 414 LHSLLHGSRGP-------GRM----PVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLS 462
           L+  L  S GP       G       +   + L +AS  A G+ +L      H  H  L+
Sbjct: 94  LNRFLR-SHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASL---HFVHRDLA 149

Query: 463 SSNIVVDQLGNACISDIGVHQ-LFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYS 521
           + N +V Q     I D G+ + ++ T ++         +++    +   RKF    D++S
Sbjct: 150 TRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWS 209

Query: 522 FGVVLLEILT 531
           FGVVL EI T
Sbjct: 210 FGVVLWEIFT 219

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 62.5 bits (153), Expect = 6e-11
 Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 29/206 (14%)

Query: 341 LGKGCVGATYKV-VLDGGDVVVVKRIRERK--KKREVD----EWLRVIGGLRHSNIVSIR 393
           LGKG  G    V   D G +  +K ++++K  K++EV+    E   ++  + H  IV + 
Sbjct: 1   LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTER-NILSRINHPFIVKLH 59

Query: 394 AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNK 453
                +++L+LV +Y P G L S L      GR   +  +    A++    L +LH    
Sbjct: 60  YAFQTEEKLYLVLEYAPGGELFSHLSKE---GRFSEERARFY--AAEIVLALEYLH---S 111

Query: 454 AHLFHGHLSSSNIVVDQLGNACISDIGV-HQLFHTPFFINDA-----YNAPELKFNNNNN 507
             + +  L   NI++D  G+  ++D G+  +L       N       Y APE+       
Sbjct: 112 LGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKGYG 171

Query: 508 YSQRKFWQRCDVYSFGVVLLEILTGK 533
            +        D +S GV+L E+LTGK
Sbjct: 172 KA-------VDWWSLGVLLYEMLTGK 190

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 62.3 bits (151), Expect = 8e-11
 Identities = 58/265 (21%), Positives = 112/265 (42%), Gaps = 22/265 (8%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRE---RKKKREVDEWLRVIGGLRHSNIVSIRAY 395
           ELLGKG  G  +K  L     V VK  +E   ++ K +     R++    H NIV +   
Sbjct: 1   ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGV 60

Query: 396 CNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAH 455
           C  +  +++V + +P G   S L   +   +      + +K A D+A G+A+L   N   
Sbjct: 61  CTQRQPIYIVMELVPGGDFLSFLRKKKDELKT----KQLVKFALDAAAGMAYLESKN--- 113

Query: 456 LFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQ 515
             H  L++ N +V +     ISD G+ +      + +       +K+      +  ++  
Sbjct: 114 CIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGRYSS 173

Query: 516 RCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMR 575
             DV+S+G++L E  +         LG+  +  M  Q         + +   ++  +++ 
Sbjct: 174 ESDVWSYGILLWETFS---------LGVCPYPGMTNQQAREQVEKGYRMSCPQKCPDDVY 224

Query: 576 ALLQVALLCLAPLPKDRPNMSIVHR 600
            ++Q    C    P++RP  S + +
Sbjct: 225 KVMQ---RCWDYKPENRPKFSELQK 246

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 62.5 bits (152), Expect = 9e-11
 Identities = 50/208 (24%), Positives = 95/208 (45%), Gaps = 23/208 (11%)

Query: 336 SSAELLGKGCVGATYKVVLDGGDVVVVKRIRE-RKKKREVDEWLRVIGGLRHSNIVSIRA 394
           +  + LG G  G  +     G   V +K IRE    + +  E  +V+  L H N+V +  
Sbjct: 7   TFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYG 66

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFL--HGYN 452
            C  +  +F+V +Y+ +G L + L   +G           L + SD  + + +L  +G+ 
Sbjct: 67  VCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEW----LLDMCSDVCEAMEYLESNGF- 121

Query: 453 KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE-----LKFNNNNN 507
                H  L++ N +V +     +SD G+       + ++D Y + +     +K+     
Sbjct: 122 ----IHRDLAARNCLVGEDNVVKVSDFGL-----ARYVLDDQYTSSQGTKFPVKWAPPEV 172

Query: 508 YSQRKFWQRCDVYSFGVVLLEILT-GKM 534
           +   +F  + DV+SFGV++ E+ + GKM
Sbjct: 173 FDYSRFSSKSDVWSFGVLMWEVFSEGKM 200

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 62.1 bits (152), Expect = 1e-10
 Identities = 61/286 (21%), Positives = 111/286 (38%), Gaps = 69/286 (24%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR-----ERKKKREVDEWLRVIGGLRHSNIVSI 392
           + +GKG  G  Y V     G + V+K I      E++++  ++E ++++  L H NI+  
Sbjct: 6   KQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNE-VKILKKLNHPNIIKY 64

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGR-MPVD--WNKRLKLASDSAKGLAFLH 449
                 K +L +V +Y   G L   +   +  G+  P +   +  ++L       L +LH
Sbjct: 65  YESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCL----ALKYLH 120

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-HQLFH----------TPFFINDAYNAP 498
                 + H  +   NI +   G   + D G+   L            TP+     Y +P
Sbjct: 121 ---SRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPY-----YLSP 172

Query: 499 ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQDESAW 557
           EL    N  Y+ +      D++S G VL E+ T K   +G+  L +              
Sbjct: 173 ELC--QNKPYNYKS-----DIWSLGCVLYELCTLKHPFEGENLLELAL------------ 213

Query: 558 EVFDFELIMDKEME-------EEMRALLQVALLCLAPLPKDRPNMS 596
                  I+  +          E+R L+      L   P++RP+++
Sbjct: 214 ------KILKGQYPPIPSQYSSELRNLVS---SLLQKDPEERPSIA 250

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 24/191 (12%)

Query: 356 GGDVVVVKRIRERKK--KREVDEWLRVIGGLR---HSNIVSIRAY----CNGKDELFLVY 406
               V+++  ++  K  K  +D     I  LR    +NI+ I  +     +    L L+ 
Sbjct: 42  NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLIL 101

Query: 407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNI 466
           +Y   G L  +L   +      + +  +L +A D  KGL  L+ Y      + +L+S + 
Sbjct: 102 EYCTRGYLREVLDKEKD-----LSFKTKLDMAIDCCKGLYNLYKYTNKP--YKNLTSVSF 154

Query: 467 VVDQLGNACISDIGVHQLFHTPFF--IND-AYNAPELKFNNNNNYSQRKFWQRCDVYSFG 523
           +V +     I   G+ ++  +P F  +N   Y + ++  +  + Y+ +      D+YS G
Sbjct: 155 LVTENYKLKIICHGLEKILSSPPFKNVNFMVYFSYKMLNDIFSEYTIKD-----DIYSLG 209

Query: 524 VVLLEILTGKM 534
           VVL EI TGK+
Sbjct: 210 VVLWEIFTGKI 220

Length = 283

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.7 bits (155), Expect = 2e-10
 Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 20/161 (12%)

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSR 187
           G  P+ +S LRHL+ ++LS N+  G IP + L  + +L  L L  N F G++        
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 188 SILDFNVSNNQLSGQIPAWMS--PFGGSSF--AGNKNLCGRPLPSDCSNRTVEPEQPPRS 243
           S+   N++ N LSG++PA +       +SF    N  LCG P       R   P      
Sbjct: 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP-----GLRACGPHLS--- 542

Query: 244 RPRSSRVVTVIVIVIFDAVAILVAVVTVTWCCYKRKRRSLR 284
                  V   + + F      + +V    C +KR++  LR
Sbjct: 543 -------VGAKIGIAFGVSVAFLFLVICAMCWWKRRQNILR 576

Length = 623

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 62/218 (28%), Positives = 95/218 (43%), Gaps = 51/218 (23%)

Query: 341 LGKGCVGATYKVVL--------DGGDVVVVKRIRERKKKREVDEWLRVIGGLR---HSNI 389
           LG+G  G   KV L          G++V VK ++    ++    W + I  L+   H NI
Sbjct: 12  LGEGHFG---KVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENI 68

Query: 390 VSIRAYCN--GKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAF 447
           V  +  C+  G   L L+ +Y+P GSL   L       +  ++  + L  A    +G+A+
Sbjct: 69  VKYKGCCSEQGGKGLQLIMEYVPLGSLRDYL------PKHKLNLAQLLLFAQQICEGMAY 122

Query: 448 LHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-------HQLFH------TPFFINDA 494
           LH     H  H  L++ N+++D      I D G+       H+ +       +P F    
Sbjct: 123 LHS---QHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVF---- 175

Query: 495 YNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           + A E LK N        KF    DV+SFGV L E+LT
Sbjct: 176 WYAVECLKEN--------KFSYASDVWSFGVTLYELLT 205

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 35/214 (16%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRA 394
           E++G G     Y  + L   + V +KRI   K +  VDE  +    +    H N+V    
Sbjct: 7   EVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVK--Y 64

Query: 395 YCN--GKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLAS---DSAKGLAFLH 449
           Y +    DEL+LV  YL  GSL  ++  S      P        +A+   +  KGL +LH
Sbjct: 65  YTSFVVGDELWLVMPYLSGGSLLDIMKSS-----YPRGGLDEAIIATVLKEVLKGLEYLH 119

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----------FFINDAYNAPE 499
                   H  + + NI++ + G+  I+D GV                 F     + APE
Sbjct: 120 SNG---QIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPE 176

Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           +            +  + D++SFG+  +E+ TG 
Sbjct: 177 VM------EQVHGYDFKADIWSFGITAIELATGA 204

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 63/242 (26%), Positives = 107/242 (44%), Gaps = 40/242 (16%)

Query: 341 LGKGCVGATYKVV-LDGGDVVVVKRIRERKKK--------REVDEWLRVIGGLRHSNIVS 391
           +G+G  G  Y+      G++V +K++R   ++        RE+     ++  LRH NIV 
Sbjct: 15  IGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREI----TLLLNLRHPNIVE 70

Query: 392 IRAYCNGK--DELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLK-LASDSAKGLAFL 448
           ++    GK  D +FLV +Y     L SLL     P         ++K L     +GL +L
Sbjct: 71  LKEVVVGKHLDSIFLVMEYCEQ-DLASLLDNMPTPFSES-----QVKCLMLQLLRGLQYL 124

Query: 449 HGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH------TPFFINDAYNAPELKF 502
           H   +  + H  L  SN+++   G   I+D G+ + +       TP  +   Y APEL  
Sbjct: 125 H---ENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLL 181

Query: 503 NNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELGIVKW-VQMMGQ-DESAWEV 559
                 +        D+++ G +L E+L  K +  G  E+  +   +Q++G  +ES W  
Sbjct: 182 GCTTYTTA------IDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPG 235

Query: 560 FD 561
           F 
Sbjct: 236 FS 237

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 61.1 bits (148), Expect = 3e-10
 Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 27/207 (13%)

Query: 339 ELLGKGCVGATYKVVL--DGGDV---VVVKRIRERKKKR---EVDEWLRVIGGLRHSNIV 390
           +LLG G  G  +K +   +G  +   V +K I++R  ++   E+ + +  +G L H+ IV
Sbjct: 13  KLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIV 72

Query: 391 SIRAYCNGKDELFLVYDYLPHGSL--HSLLH-GSRGPGRMPVDWNKRLKLASDSAKGLAF 447
            +   C G   L LV    P GSL  H   H  S  P R+ ++W  ++      AKG+ +
Sbjct: 73  RLLGICPGA-SLQLVTQLSPLGSLLDHVRQHRDSLDPQRL-LNWCVQI------AKGMYY 124

Query: 448 LHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH---TPFFINDAYNAPELKFNN 504
           L    +  + H +L++ NI++       I+D GV  L +     +F ++      +K+  
Sbjct: 125 LE---EHRMVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTP--IKWMA 179

Query: 505 NNNYSQRKFWQRCDVYSFGVVLLEILT 531
             +    ++  + DV+S+GV + E+++
Sbjct: 180 LESILFGRYTHQSDVWSYGVTVWEMMS 206

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 61.2 bits (148), Expect = 3e-10
 Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 19/188 (10%)

Query: 359 VVVVKRIRERK--KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS 416
           +V VK +++     +++      ++  L+H +IV     C   D L +V++Y+ HG L+ 
Sbjct: 37  LVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNK 96

Query: 417 LLHGSRGPGRM------PVDWNKRLKL------ASDSAKGLAFLHGYNKAHLFHGHLSSS 464
            L  + GP  M      P      L L      AS  A G+ +L      H  H  L++ 
Sbjct: 97  FLR-AHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYL---ASQHFVHRDLATR 152

Query: 465 NIVVDQLGNACISDIGVHQ-LFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFG 523
           N +V       I D G+ + ++ T ++    +    +++    +   RKF    DV+SFG
Sbjct: 153 NCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFG 212

Query: 524 VVLLEILT 531
           V+L EI T
Sbjct: 213 VILWEIFT 220

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 60.8 bits (147), Expect = 3e-10
 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 11/174 (6%)

Query: 357 GDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAY-CNGKDELFLVYDYLPHGSLH 415
           G+ V VK I+     +       V+  LRHSN+V +       K  L++V +Y+  GSL 
Sbjct: 29  GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLV 88

Query: 416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNAC 475
             L   R  GR  +  +  LK + D  + + +L   N     H  L++ N++V +   A 
Sbjct: 89  DYL---RSRGRSVLGGDCLLKFSLDVCEAMEYLEANN---FVHRDLAARNVLVSEDNVAK 142

Query: 476 ISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEI 529
           +SD G+ +   +     D    P +K+       ++KF  + DV+SFG++L EI
Sbjct: 143 VSDFGLTKEASS---TQDTGKLP-VKWTAPEALREKKFSTKSDVWSFGILLWEI 192

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 60.7 bits (147), Expect = 4e-10
 Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 20/210 (9%)

Query: 332 DLLKSSAELLGKGCVGATYKVVLDGGDVVVVKRIRE-RKKKREVDEWLRVIGGLRHSNIV 390
             L    E+ G G  G  +         V +K IRE    + +  E  +V+  L H  +V
Sbjct: 4   SELTLVQEI-GSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLV 62

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
            +   C  +  + LV++++ HG L   L   RG           L +  D  +G+A+L  
Sbjct: 63  QLYGVCTERSPICLVFEFMEHGCLSDYLRAQRG----KFSQETLLGMCLDVCEGMAYLE- 117

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE-----LKFNNN 505
              +++ H  L++ N +V +     +SD G+     T F ++D Y +       +K+++ 
Sbjct: 118 --SSNVIHRDLAARNCLVGENQVVKVSDFGM-----TRFVLDDQYTSSTGTKFPVKWSSP 170

Query: 506 NNYSQRKFWQRCDVYSFGVVLLEILT-GKM 534
             +S  K+  + DV+SFGV++ E+ + GK 
Sbjct: 171 EVFSFSKYSSKSDVWSFGVLMWEVFSEGKT 200

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 61.1 bits (149), Expect = 4e-10
 Identities = 53/216 (24%), Positives = 99/216 (45%), Gaps = 50/216 (23%)

Query: 339 ELLGKGCVGATYKVVLDG-GDVVVVKRIRERKKKRE--VDEWLRVIGGLRHSNIVS-IRA 394
           E +G+G  G  YK      G  V +K++R RK+ +E  ++E + ++   +H NIV    +
Sbjct: 25  EKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINE-ILIMKDCKHPNIVDYYDS 83

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWN-KRLK------LASDSAKGLAF 447
           Y  G DEL++V +Y+  GSL  +           +  N  R+       +  +  +GL +
Sbjct: 84  YLVG-DELWVVMEYMDGGSLTDI-----------ITQNFVRMNEPQIAYVCREVLQGLEY 131

Query: 448 LHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-----------HQLFHTPFFINDAYN 496
           LH  N  H     + S NI++ + G+  ++D G            + +  TP+++     
Sbjct: 132 LHSQNVIHR---DIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWM----- 183

Query: 497 APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
           APE+      +Y  +      D++S G++ +E+  G
Sbjct: 184 APEVI--KRKDYGPK-----VDIWSLGIMCIEMAEG 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 61.0 bits (149), Expect = 4e-10
 Identities = 63/268 (23%), Positives = 110/268 (41%), Gaps = 56/268 (20%)

Query: 341 LGKGCVGATYKVV-LDGGDVVVVKRIR-ERKK-------KREVDEWLRVIGGLRHSNIVS 391
           +G+G  G  YK      G++V +K+IR E +K        RE+    +++  LRH NIV 
Sbjct: 7   IGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREI----KLLQKLRHPNIVR 62

Query: 392 IRAYC--NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAK------ 443
           ++      GK  +++V++Y+ H  L  LL             +  +K      K      
Sbjct: 63  LKEIVTSKGKGSIYMVFEYMDH-DLTGLLD------------SPEVKFTESQIKCYMKQL 109

Query: 444 --GLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIG-------VHQLFHTPFFINDA 494
             GL +LH      + H  +  SNI+++  G   ++D G        +   +T   I   
Sbjct: 110 LEGLQYLHS---NGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLW 166

Query: 495 YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWV-QMMG- 551
           Y  PEL       Y         D++S G +L E+  GK   +G  EL  ++ + ++ G 
Sbjct: 167 YRPPELLLGATR-YGPE-----VDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGS 220

Query: 552 -QDESAWEVFDFELIMDKEMEEEMRALL 578
             DE+   V       + + ++  +  L
Sbjct: 221 PTDENWPGVSKLPWFENLKPKKPYKRRL 248

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 60.9 bits (147), Expect = 4e-10
 Identities = 62/263 (23%), Positives = 113/263 (42%), Gaps = 36/263 (13%)

Query: 359 VVVVKRIRERKK--KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS 416
           +V VK +++     +++      ++  L+H +IV     C   D L +V++Y+ HG L+ 
Sbjct: 37  LVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNK 96

Query: 417 LLHGSRGP-------GRMPVDW--NKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIV 467
            L  + GP       G  P +   ++ L +A   A G+ +L      H  H  L++ N +
Sbjct: 97  FLR-AHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYL---ASQHFVHRDLATRNCL 152

Query: 468 VDQLGNACISDIGVHQ-LFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVL 526
           V +     I D G+ + ++ T ++    +    +++    +   RKF    DV+S GVVL
Sbjct: 153 VGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVL 212

Query: 527 LEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRA----LLQVAL 582
            EI T          G   W Q+     S  EV   E I    + +  R     +  + L
Sbjct: 213 WEIFT---------YGKQPWYQL-----SNNEV--IECITQGRVLQRPRTCPKEVYDLML 256

Query: 583 LCLAPLPKDRPNMSIVHRMIEDI 605
            C    P  R N+  +H +++++
Sbjct: 257 GCWQREPHMRLNIKEIHSLLQNL 279

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.2 bits (151), Expect = 5e-10
 Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 87  LSRLTQLRLLSL-KNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDL 145
           +  LT L  L L  NNL      +L +  +L++L+L  N+ +G  P  + SL+ L  +DL
Sbjct: 232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291

Query: 146 SHNAYEGEIPMTELT-RLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP 204
           S N+  GEIP  EL  +L NL  L L  N FTG +    +S   +    + +N+ SG+IP
Sbjct: 292 SDNSLSGEIP--ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349

Query: 205 A 205
            
Sbjct: 350 K 350

Length = 968

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 60.3 bits (147), Expect = 5e-10
 Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 50/218 (22%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKRE----VDEWLRVIGGLRHSNIVSIR 393
           +L+G+G  G  YK + L+ GD V +K+I   K K E    + + + ++  L+H NIV   
Sbjct: 6   DLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYI 65

Query: 394 AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSA-------KGLA 446
                 D L+++ +Y  +GSL  ++      G  P          S  A       +GLA
Sbjct: 66  GSIETSDSLYIILEYAENGSLRQIIKKF---GPFP---------ESLVAVYVYQVLQGLA 113

Query: 447 FLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-----------HQLFHTPFFINDAY 495
           +LH      + H  + ++NI+  + G   ++D GV             +  TP+++    
Sbjct: 114 YLHEQG---VIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWM---- 166

Query: 496 NAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
            APE+     +  S        D++S G  ++E+LTG 
Sbjct: 167 -APEVI--EMSGAS-----TASDIWSLGCTVIELLTGN 196

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 60.1 bits (146), Expect = 6e-10
 Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 27/208 (12%)

Query: 339 ELLGKGCVGATYK-VVLDGGDVVVVKRI-------RERKKKREVDEWLRVIGGLRHSNIV 390
           ELLG G  G+ Y+ + LD GD   VK +         ++  +++++ + ++  L+H NIV
Sbjct: 6   ELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIV 65

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
                   +D L++  + +P GSL  LL    G    PV      ++      GL +LH 
Sbjct: 66  QYLGTEREEDNLYIFLELVPGGSLAKLL-KKYGSFPEPVIRLYTRQI----LLGLEYLHD 120

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIG-----VHQLFHTPFFINDAYNAPELKFNNN 505
            N     H  +  +NI+VD  G   ++D G     V   F   F  +  + APE+     
Sbjct: 121 RN---TVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKSFKGSPYWMAPEV-IAQQ 176

Query: 506 NNYSQRKFWQRCDVYSFGVVLLEILTGK 533
             Y         D++S G  +LE+ TGK
Sbjct: 177 GGYG----LA-ADIWSLGCTVLEMATGK 199

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 60.1 bits (145), Expect = 6e-10
 Identities = 66/279 (23%), Positives = 123/279 (44%), Gaps = 42/279 (15%)

Query: 341 LGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVD-EWLRVIGGLRHSNIVSIRAYCNGK 399
           LG+GC G  +    +G   V +K ++      E   +  +V+  LRH  +V + A  + +
Sbjct: 14  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS-E 72

Query: 400 DELFLVYDYLPHGSLHSLLHGSRGPG-RMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFH 458
           + +++V +Y+  GSL   L G  G   R+P    + + +A+  A G+A++   N  H   
Sbjct: 73  EPIYIVTEYMSKGSLLDFLKGEMGKYLRLP----QLVDMAAQIASGMAYVERMNYVHR-- 126

Query: 459 GHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE-----LKFNNNNNYSQRKF 513
             L ++NI+V +     ++D G+ +L       ++ Y A +     +K+         +F
Sbjct: 127 -DLRAANILVGENLVCKVADFGLARLIE-----DNEYTARQGAKFPIKWTAPEAALYGRF 180

Query: 514 WQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFD-----FELIMDK 568
             + DV+SFG++L E+ T          G V +  M+ +     EV D     + +    
Sbjct: 181 TIKSDVWSFGILLTELTTK---------GRVPYPGMVNR-----EVLDQVERGYRMPCPP 226

Query: 569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT 607
           E  E +  L+     C    P++RP    +   +ED  T
Sbjct: 227 ECPESLHDLM---CQCWRKEPEERPTFEYLQAFLEDYFT 262

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 59.8 bits (145), Expect = 6e-10
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 17/136 (12%)

Query: 399 KDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFH 458
           KD L+LV +YL  G   SL+   +  G +P DW K  +  ++   G+  LH      + H
Sbjct: 69  KDYLYLVMEYLNGGDCASLI---KTLGGLPEDWAK--QYIAEVVLGVEDLHQRG---IIH 120

Query: 459 GHLSSSNIVVDQLGNACISDIGVHQ--LFHTPFFINDAYNAPELKFNNNNNYSQRKFWQR 516
             +   N+++DQ G+  ++D G+ +  L +  F     Y APE      ++       + 
Sbjct: 121 RDIKPENLLIDQTGHLKLTDFGLSRNGLENKKFVGTPDYLAPETILGVGDD-------KM 173

Query: 517 CDVYSFGVVLLEILTG 532
            D +S G V+ E L G
Sbjct: 174 SDWWSLGCVIFEFLFG 189

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 66/254 (25%), Positives = 104/254 (40%), Gaps = 32/254 (12%)

Query: 360 VVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS 416
           V VK +++        E+LR   V+  L H  IV +   C G + L LV +  P G L  
Sbjct: 26  VAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKG-EPLMLVMELAPLGPLLK 84

Query: 417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACI 476
            L   R    +PV  +   +LA   A G+A+L      H  H  L++ N+++     A I
Sbjct: 85  YLKKRR---EIPV--SDLKELAHQVAMGMAYLES---KHFVHRDLAARNVLLVNRHQAKI 136

Query: 477 SDIGVHQLFHTPFFINDAYNAPE-----LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           SD G+ +        +D Y A       LK+      +  KF  + DV+S+GV L E  +
Sbjct: 137 SDFGMSRALGAG---SDYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFS 193

Query: 532 GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKD 591
                G    G +K  +++   ES          + +  EE  + +  + L C    P+D
Sbjct: 194 ----YGAKPYGEMKGAEVIAMLESGER-------LPRP-EECPQEIYSIMLSCWKYRPED 241

Query: 592 RPNMSIVHRMIEDI 605
           RP  S +       
Sbjct: 242 RPTFSELESTFRRD 255

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 27/205 (13%)

Query: 341 LGKGCVGATYKVVL--DGGDV---VVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSI 392
           LG G  G  YK V   +G  V   V +K +RE    +   E L    V+  + H ++V +
Sbjct: 15  LGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRL 74

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGP--GRMPVDWNKRLKLASDSAKGLAFLHG 450
              C    ++ L+   +P G L   +   +     +  ++W  ++      AKG+++L  
Sbjct: 75  LGICLSS-QVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQI------AKGMSYL-- 125

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE----LKFNNNN 506
             +  L H  L++ N++V    +  I+D G+ +L          Y+A      +K+    
Sbjct: 126 -EEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVD---EKEYHAEGGKVPIKWMALE 181

Query: 507 NYSQRKFWQRCDVYSFGVVLLEILT 531
           +   R +  + DV+S+GV + E++T
Sbjct: 182 SILHRIYTHKSDVWSYGVTVWELMT 206

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 47/206 (22%), Positives = 92/206 (44%), Gaps = 29/206 (14%)

Query: 341 LGKGCVGATYKVV-LDGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRA 394
           +G+G  G  YK      G++V +K+I+ R       K  + E ++++  L H NI+ +  
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALRE-IKLLKELNHPNIIKLLD 65

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLK-LASDSAKGLAFLHGYNK 453
               K +L+LV++++       +    RG   +P      +K       +GLAF H    
Sbjct: 66  VFRHKGDLYLVFEFMDTDLYKLIKDRQRG---LP---ESLIKSYLYQLLQGLAFCH---S 116

Query: 454 AHLFHGHLSSSNIVVDQLGNACISDIGVHQLF------HTPFFINDAYNAPELKFNNNNN 507
             + H  L   N++++  G   ++D G+ + F      +T + +   Y APEL   +   
Sbjct: 117 HGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGD--- 173

Query: 508 YSQRKFWQRCDVYSFGVVLLEILTGK 533
              + +    D++S G +  E+L+ +
Sbjct: 174 ---KGYSTPVDIWSVGCIFAELLSRR 196

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 45/182 (24%), Positives = 85/182 (46%), Gaps = 19/182 (10%)

Query: 360 VVVKRIRERKKKRE-VDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLL 418
           V +K I E     E   E  +V+  L H  +V +   C  +  L++V +++ +G L + L
Sbjct: 31  VAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYL 90

Query: 419 HGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISD 478
              +G     +     L +  D  +G+ +L    +    H  L++ N +V   G   +SD
Sbjct: 91  RQRQGKLSKDM----LLSMCQDVCEGMEYLE---RNSFIHRDLAARNCLVSSTGVVKVSD 143

Query: 479 IGVHQLFHTPFFINDAYNAPE-----LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-G 532
            G+     T + ++D Y +       +K++    ++  K+  + DV+SFGV++ E+ T G
Sbjct: 144 FGM-----TRYVLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEG 198

Query: 533 KM 534
           KM
Sbjct: 199 KM 200

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 64/288 (22%), Positives = 124/288 (43%), Gaps = 41/288 (14%)

Query: 339 ELLGKGCVGATYKVVLDGGDV----VVVKRIR-ERKKKREVDEWLR---VIGGLRHSNIV 390
           ++LG+G  G+  +  L   D     V VK ++ +     E++E+L     +    H N++
Sbjct: 5   KILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVM 64

Query: 391 SIRAYC------NGKDELFLVYDYLPHGSLHSLLHGSR---GPGRMPVDWNKRLKLASDS 441
            +   C          +  ++  ++ HG LHS L  SR    P ++P+     LK   D 
Sbjct: 65  KLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPL--QTLLKFMVDI 122

Query: 442 AKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-HQLFHTPFFINDAYNAPEL 500
           A G+ +L   N     H  L++ N ++ +    C++D G+  +++   ++         +
Sbjct: 123 ALGMEYLSNRN---FIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPV 179

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVF 560
           K+    + + R +  + DV++FGV + EI T       G       V+         E++
Sbjct: 180 KWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPG-------VENH-------EIY 225

Query: 561 DFELIMD---KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
           D+ L      K+ E+ +  L  +   C    PKDRP  + +  ++E+I
Sbjct: 226 DY-LRHGNRLKQPEDCLDELYDLMYSCWRADPKDRPTFTKLREVLENI 272

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 38/212 (17%)

Query: 339 ELLGKGCVGATYKV-VLDGGDVVVVKRIRER------KKK--REVDEWLRVIGGLRHSNI 389
            ++G+G  G   K      G++V +K+ +E       KK   REV    +V+  LRH NI
Sbjct: 7   GVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREV----KVLRQLRHENI 62

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRL--KLASDSAKGLAF 447
           V+++     K  L+LV++Y+   +L  LL     PG +P D  +    +L     + +A+
Sbjct: 63  VNLKEAFRRKGRLYLVFEYVER-TLLELL--EASPGGLPPDAVRSYIWQL----LQAIAY 115

Query: 448 LHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-------TPFFINDAYNAPEL 500
            H +N   + H  +   NI+V + G   + D G  +          T +     Y APEL
Sbjct: 116 CHSHN---IIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPEL 172

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
              + N      + +  DV++ G ++ E+L G
Sbjct: 173 LVGDTN------YGKPVDVWAIGCIMAELLDG 198

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 57/214 (26%), Positives = 93/214 (43%), Gaps = 39/214 (18%)

Query: 341 LGKGCVGATYKVV-LDGGDVVVVKRIR----ERKKKREVDEWLRVIGGLRHSNIVSIRAY 395
           +G G  G  Y  V LD G+++ VK IR    + K  +E+ + ++V+  L+H N+V     
Sbjct: 8   IGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGV 67

Query: 396 CNGKDELFLVYDYLPHGSLHSLLHGSRG-PGRMPVDWNKRLKLASDSAKGLAFLHGYNKA 454
              ++++++  +Y   G+L  LL   R     +   +  +L       +GLA+LH     
Sbjct: 68  EVHREKVYIFMEYCSGGTLEELLEHGRILDEHVIRVYTLQL------LEGLAYLH---SH 118

Query: 455 HLFHGHLSSSNIVVDQLGNACISDIG---------------VHQLFHTPFFINDAYNAPE 499
            + H  +  +NI +D  G   + D G               V  L  TP     AY APE
Sbjct: 119 GIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTP-----AYMAPE 173

Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           +          R      D++S G V+LE+ TGK
Sbjct: 174 VITGGKGKGHGRA----ADIWSLGCVVLEMATGK 203

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 58.4 bits (141), Expect = 3e-09
 Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 16/183 (8%)

Query: 357 GDVVVVKRIRERKKKREVDEWLRVIGGLR---HSNIVSIRAYCN--GKDELFLVYDYLPH 411
           G+ V VK ++       + +  + I  LR   H NIV  +  C   G + + L+ ++LP 
Sbjct: 33  GEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPS 92

Query: 412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL 471
           GSL   L  ++      ++  ++LK A    KG+ +L         H  L++ N++V+  
Sbjct: 93  GSLKEYLPRNKNK----INLKQQLKYAVQICKGMDYLGSRQ---YVHRDLAARNVLVESE 145

Query: 472 GNACISDIGVHQLFHTP---FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLE 528
               I D G+ +   T    + + D  ++P   +       Q KF+   DV+SFGV L E
Sbjct: 146 HQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPEC-LIQSKFYIASDVWSFGVTLYE 204

Query: 529 ILT 531
           +LT
Sbjct: 205 LLT 207

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 58.1 bits (140), Expect = 3e-09
 Identities = 64/276 (23%), Positives = 111/276 (40%), Gaps = 38/276 (13%)

Query: 339 ELLGKGCVGATYKVVLDGGDV-VVVKRIRERKKKREVDEWL---RVIGGLRHSNIVSIRA 394
           E +G+G  G  +   L   +  V VK  RE        ++L   R++    H NIV +  
Sbjct: 1   ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIG 60

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA 454
            C  K  +++V + +  G   + L  + GP R+ V   + +++  ++A G+ +L      
Sbjct: 61  VCTQKQPIYIVMELVQGGDFLTFLR-TEGP-RLKV--KELIQMVENAAAGMEYLE---SK 113

Query: 455 HLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFF--------INDAYNAPELKFNNNN 506
           H  H  L++ N +V +     ISD G+ +      +        I   + APE    N  
Sbjct: 114 HCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEAL--NYG 171

Query: 507 NYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM 566
            YS        DV+SFG++L E  +         LG V +  +  Q           L  
Sbjct: 172 RYSSES-----DVWSFGILLWEAFS---------LGAVPYANLSNQQTREAIEQGVRLPC 217

Query: 567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMI 602
            +   + +  L++    C    P  RP+ S VH+ +
Sbjct: 218 PELCPDAVYRLME---RCWEYDPGQRPSFSTVHQEL 250

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 68/299 (22%), Positives = 111/299 (37%), Gaps = 64/299 (21%)

Query: 339 ELLGKGCVGATYK----VVLDGGD--VVVVKRIRE---RKKKREVDEWLRVIGGLRHSNI 389
             LG+G  G  +      +    D  +V VK ++E      +++ +    ++   +H NI
Sbjct: 11  RELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENI 70

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKR----------LKLAS 439
           V     C   D   +V++Y+ HG L+  L  S GP    +               L++A 
Sbjct: 71  VKFYGVCTEGDPPIMVFEYMEHGDLNKFLR-SHGPDAAFLKSPDSPMGELTLSQLLQIAV 129

Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN--- 496
             A G+ +L      H  H  L++ N +V       I D G+ +  +T     D Y    
Sbjct: 130 QIASGMVYLAS---QHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYT----TDYYRVGG 182

Query: 497 ---------APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKW 546
                     PE       +   RKF    DV+SFGVVL EI T GK            W
Sbjct: 183 HTMLPIRWMPPE-------SIMYRKFTTESDVWSFGVVLWEIFTYGKQP----------W 225

Query: 547 VQMMGQDESAWEVFDF--ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIE 603
             +     S  EV +   +  + +        +  + L C    P+ R N+  +H  ++
Sbjct: 226 YGL-----SNEEVIECITQGRLLQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQ 279

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 57.9 bits (141), Expect = 4e-09
 Identities = 64/241 (26%), Positives = 114/241 (47%), Gaps = 44/241 (18%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKK--------REVDEWLRVIGGLRHSNI 389
           E LG+G  G  YK      G++V +K+IR   ++        RE+     ++  L+H NI
Sbjct: 5   EKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREI----SLLKELKHPNI 60

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLK---LASDSAKGLA 446
           V +    + + +L+LV++Y     L   L    GP  +  +  K +    L     +GLA
Sbjct: 61  VKLLDVIHTERKLYLVFEYCDM-DLKKYLDKRPGP--LSPNLIKSIMYQLL-----RGLA 112

Query: 447 FLHGYNKAH-LFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF--FINDA----YNAPE 499
           + H    +H + H  L   NI++++ G   ++D G+ + F  P   + ++     Y APE
Sbjct: 113 YCH----SHRILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAPE 168

Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELG-IVKWVQMMGQ-DESA 556
           +    + +YS        D++S G +  E++TGK +  GD E+  + K  Q++G   E +
Sbjct: 169 ILL-GSKHYS-----TAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEES 222

Query: 557 W 557
           W
Sbjct: 223 W 223

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 58.7 bits (142), Expect = 6e-09
 Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 8/137 (5%)

Query: 75  LEDLDLTGPAEV------LSRLTQLRLLSLKNN-LLSSSNLNLSSWPHLKHLYLSHNRFT 127
           L+ LDL G   V      L+ LT L  L+L +N L+      L     LK +YL +N  +
Sbjct: 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSR 187
           G  P  +  L  L  +DL +N   G IP + L  L NL  L L  N+ +G +     S +
Sbjct: 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ 284

Query: 188 SILDFNVSNNQLSGQIP 204
            ++  ++S+N LSG+IP
Sbjct: 285 KLISLDLSDNSLSGEIP 301

Length = 968

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 56.7 bits (137), Expect = 8e-09
 Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 59/278 (21%)

Query: 340 LLGKGCVGATYKVV-LDGGDVVVVKRIRER---KKKRE--VDEWLRVIGGLRHSNIVSIR 393
            LGKG  G+ YKV  L       +K +      +K+RE  V+E +R++  + H NI+S +
Sbjct: 7   KLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNE-IRILASVNHPNIISYK 65

Query: 394 -AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGR-MPVD--WNKRLKLASDSAKGLAFLH 449
            A+ +G ++L +V +Y P G L   +   +   + +P    W   ++L     +GL  LH
Sbjct: 66  EAFLDG-NKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLL----RGLQALH 120

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH---------TPFFINDAYNAPEL 500
                 + H  L S+NI++       I D+G+ ++           TP      Y APE+
Sbjct: 121 EQK---ILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAKTQIGTPH-----YMAPEV 172

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM---AKGDGELGIVKWVQMMGQDESAW 557
                  +  R +  + D++S G +L E+ T      A+   +L   ++    G+     
Sbjct: 173 -------WKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQDL---RYKVQRGKYPPIP 222

Query: 558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNM 595
            ++  +L                    L   PK RPN 
Sbjct: 223 PIYSQDLQ-------------NFIRSMLQVKPKLRPNC 247

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 57.0 bits (138), Expect = 8e-09
 Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 33/209 (15%)

Query: 339 ELLGKGCVGATYKVVL-----DGGDVVVVKRIRERKKKREVDEW----LRVIGGLRHSNI 389
            L+G+G    +Y +V+     + G +V +K+  E +  + V +     +R++  LRH N+
Sbjct: 7   GLVGEG----SYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENL 62

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH 449
           V++      K  L+LV++++ H  L  L     G     +D ++  K      +G+ F H
Sbjct: 63  VNLIEVFRRKKRLYLVFEFVDHTVLDDLEKYPNG-----LDESRVRKYLFQILRGIEFCH 117

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP------FFINDAYNAPELKFN 503
            +N   + H  +   NI+V Q G   + D G  +    P      +     Y APEL   
Sbjct: 118 SHN---IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVG 174

Query: 504 NNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
           +       K+ +  D+++ G ++ E+LTG
Sbjct: 175 DT------KYGRAVDIWAVGCLVTEMLTG 197

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 56.9 bits (138), Expect = 8e-09
 Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 26/204 (12%)

Query: 341 LGKGCVGATYK-VVLDGGDVVVVKRIRERKKKREV-DEWLRVIGGLR---HSNIVSIRAY 395
           +G+G  G  +K    + G+ V +K++  R+ +  + ++ LR I  L+   H  +V +   
Sbjct: 8   IGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDV 67

Query: 396 CNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAH 455
                   LV +Y+P   L  +L     P  +P    K         KG+A++H      
Sbjct: 68  FPHGSGFVLVMEYMPS-DLSEVLRDEERP--LPEAQVKSYMRML--LKGVAYMHANG--- 119

Query: 456 LFHGHLSSSNIVVDQLGNACISDIGVHQLF-------HTPFFINDAYNAPELKFNNNNNY 508
           + H  L  +N+++   G   I+D G+ +LF       ++       Y APEL       Y
Sbjct: 120 IMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELL------Y 173

Query: 509 SQRKFWQRCDVYSFGVVLLEILTG 532
             RK+    D+++ G +  E+L G
Sbjct: 174 GARKYDPGVDLWAVGCIFAELLNG 197

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 57.0 bits (138), Expect = 9e-09
 Identities = 59/228 (25%), Positives = 96/228 (42%), Gaps = 51/228 (22%)

Query: 339 ELLGKGCVGATYKVVLDGGD------VVVVKRIRERKKKREVD------EWLRVIGGLRH 386
           + LG+G  G   K    G D       V VK +++   ++++       E +++IG  +H
Sbjct: 18  KPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIG--KH 75

Query: 387 SNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGR-----MPVDWNKRLKL---- 437
            NI+++   C  +  L++V +Y  HG+L   L   R PG       P    + L      
Sbjct: 76  KNIINLLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLV 135

Query: 438 --ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAY 495
             A   A+G+ FL         H  L++ N++V +     I+D G+ +  H      D Y
Sbjct: 136 SFAYQVARGMEFL---ASKKCIHRDLAARNVLVTEDHVMKIADFGLARDIHH----IDYY 188

Query: 496 N------------APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
                        APE  F+       R +  + DV+SFGV+L EI T
Sbjct: 189 RKTTNGRLPVKWMAPEALFD-------RVYTHQSDVWSFGVLLWEIFT 229

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 41/215 (19%)

Query: 341 LGKGCVGATYKV--VLDGGDVVVVK---RIRERKKKREVDEWLRVIGGLRHSNIVSIRAY 395
           +GKG  G    V    DG   V+ K   R   R++++  ++  +++  L+H NIV+ R  
Sbjct: 8   VGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRES 67

Query: 396 CNGKD-ELFLVYDYLPHGSLHSLLHGSRG---PGRMPVDWNKRLKLASDSAKGLAFLHGY 451
             G+D  L++V  +   G L+  L   +G   P    V+W  ++ +A      L +LH  
Sbjct: 68  WEGEDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMA------LQYLH-- 119

Query: 452 NKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ-----------LFHTPFFINDAYNAPEL 500
            + H+ H  L + N+ + +     + D+G+ +           L  TP+     Y +PEL
Sbjct: 120 -EKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGTPY-----YMSPEL 173

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA 535
             N   NY       + DV++ G  + E+ T K A
Sbjct: 174 FSNKPYNY-------KSDVWALGCCVYEMATLKHA 201

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 51/213 (23%), Positives = 92/213 (43%), Gaps = 43/213 (20%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCN 397
           E LG+G  G+ YK +  + G VV +K +   +  +E+ + + ++       IV       
Sbjct: 9   EKLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCDSPYIVKYYGSYF 68

Query: 398 GKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLK------LASDSAKGLAFLHGY 451
              +L++V +Y   GS+  ++  +          NK L       +   + KGL +LH  
Sbjct: 69  KNTDLWIVMEYCGAGSVSDIMKIT----------NKTLTEEEIAAILYQTLKGLEYLHSN 118

Query: 452 NKAHLFHGHLSSSNIVVDQLGNACISDIGVH-QLFH----------TPFFINDAYNAPEL 500
            K H     + + NI++++ G A ++D GV  QL            TPF++     APE+
Sbjct: 119 KKIHR---DIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWM-----APEV 170

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
                 N        + D++S G+  +E+  GK
Sbjct: 171 IQEIGYNN-------KADIWSLGITAIEMAEGK 196

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 4/42 (9%)

Query: 25 SDISTLLSFKASVTG-SSDSLSSWV-NSTDPCFDSWRGVTCN 64
           D   LL+FK+S+ G  S +LSSW  +S+DPC  SW GVTC+
Sbjct: 3  DDRDALLAFKSSLNGDPSGALSSWNPSSSDPC--SWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 59/271 (21%), Positives = 120/271 (44%), Gaps = 32/271 (11%)

Query: 341 LGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVD-EWLRVIGGLRHSNIVSIRAYCNGK 399
           LG+GC G  +    +G   V +K ++      E   +  +++  LRH  +V + A  + +
Sbjct: 14  LGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVS-E 72

Query: 400 DELFLVYDYLPHGSLHSLLHGSRGPG-RMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFH 458
           + +++V +++  GSL   L    G   ++P    + + +A+  A G+A++   N     H
Sbjct: 73  EPIYIVTEFMGKGSLLDFLKEGDGKYLKLP----QLVDMAAQIADGMAYIERMN---YIH 125

Query: 459 GHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE-----LKFNNNNNYSQRKF 513
             L ++NI+V       I+D G+ +L       ++ Y A +     +K+         +F
Sbjct: 126 RDLRAANILVGDNLVCKIADFGLARLIE-----DNEYTARQGAKFPIKWTAPEAALYGRF 180

Query: 514 WQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEE 573
             + DV+SFG++L E++T          G V +  M+ ++        + +   +   E 
Sbjct: 181 TIKSDVWSFGILLTELVTK---------GRVPYPGMVNREVLEQVERGYRMPCPQGCPES 231

Query: 574 MRALLQVALLCLAPLPKDRPNMSIVHRMIED 604
           +  L++   LC    P +RP    +   +ED
Sbjct: 232 LHELMK---LCWKKDPDERPTFEYIQSFLED 259

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 35/208 (16%)

Query: 341 LGKGCVGATYKVVLDG-GDVVVVKRIR----ERKKKREVDEWLRVIGGLRHSNIVSIRAY 395
           LG G  G   KV+    G ++ VK IR    E  +K+ + E L ++       IV     
Sbjct: 9   LGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRE-LDILHKCNSPYIVGFYGA 67

Query: 396 CNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAH 455
                ++ +  +Y+  GSL  +L      GR+P     ++ +A    KGL +LH   K  
Sbjct: 68  FYNNGDISICMEYMDGGSLDKIL--KEVQGRIPERILGKIAVAV--LKGLTYLH--EKHK 121

Query: 456 LFHGHLSSSNIVVDQLGNACISDIGVH-QLFHTPFFIND---------AYNAPELKFNNN 505
           + H  +  SNI+V+  G   + D GV  QL      +N          +Y APE      
Sbjct: 122 IIHRDVKPSNILVNSRGQIKLCDFGVSGQL------VNSLAKTFVGTSSYMAPERI--QG 173

Query: 506 NNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           N+YS +      D++S G+ L+E+ TG+
Sbjct: 174 NDYSVKS-----DIWSLGLSLIELATGR 196

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 26/200 (13%)

Query: 341 LGKGCVGATYK-VVLDGGDVVVVKRIR--ERKKKREVDEWLRVIGGLRHSNIVSIRAYCN 397
           +G G  G  YK   +  G++V +K I+         + + + ++   RH NIV+      
Sbjct: 11  IGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYL 70

Query: 398 GKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLA---SDSAKGLAFLHGYNKA 454
            +D+L++V +Y   GSL  +   +RGP          L++A    ++ KGLA+LH   K 
Sbjct: 71  RRDKLWIVMEYCGGGSLQDIYQVTRGP-------LSELQIAYVCRETLKGLAYLHETGK- 122

Query: 455 HLFHGHLSSSNIVVDQLGNACISDIGVH-QLFHT----PFFINDAY-NAPELKFNNNNNY 508
              H  +  +NI++ + G+  ++D GV  QL  T      FI   Y  APE+        
Sbjct: 123 --IHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERKG- 179

Query: 509 SQRKFWQRCDVYSFGVVLLE 528
               +  +CD+++ G+  +E
Sbjct: 180 ---GYDGKCDIWALGITAIE 196

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 41/220 (18%)

Query: 340 LLGKGCVGATYKVVL-------DGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNI 389
            LG G  G  Y+           G   V VK +R+    +E  E+L+   ++    H NI
Sbjct: 2   FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNI 61

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSR-----GPGRMPVDWNKRLKLASDSAKG 444
           V +   C   +  +++ + +  G L S L  +R      P     +    L +  D AKG
Sbjct: 62  VKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKEL---LDICLDVAKG 118

Query: 445 LAFLHGYNKAHLFHGHLSSSNIVVDQLGNAC-----ISDIGVHQ-LFHTPFF-------I 491
             +L    + H  H  L++ N +V + G        I D G+ + ++ + ++       +
Sbjct: 119 CVYLE---QMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLL 175

Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
              + APE       +    KF  + DV+SFGV++ EILT
Sbjct: 176 PVRWMAPE-------SLLDGKFTTQSDVWSFGVLMWEILT 208

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 60/284 (21%), Positives = 126/284 (44%), Gaps = 38/284 (13%)

Query: 341 LGKGCVGATYKVVLDGGDVVVVKRIRERK----KKREVDEWLRVIGGLR---HSNIVSIR 393
           LG+G  G+  +  L+  D ++   ++  K     + E++++L     ++   H N++ + 
Sbjct: 7   LGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLI 66

Query: 394 AYC--NGKDELF----LVYDYLPHGSLHSLLHGSR---GPGRMPVDWNKRLKLASDSAKG 444
             C    + E +    ++  ++ HG LHS L  SR    P  +P      +K  +D A G
Sbjct: 67  GVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPT--QMLVKFMTDIASG 124

Query: 445 LAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-HQLFHTPFFINDAYNAPELKFN 503
           + +L   +     H  L++ N ++++  N C++D G+  ++++  ++         +K+ 
Sbjct: 125 MEYLSSKS---FIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWI 181

Query: 504 NNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE 563
              + + R +  + DV+SFGV + EI T    +G             G + S  E++D+ 
Sbjct: 182 AIESLADRVYTTKSDVWSFGVTMWEIAT----RGQ--------TPYPGVENS--EIYDYL 227

Query: 564 LIMD--KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
              +  K+  + +  L  +   C    PKDRP+   +   +E  
Sbjct: 228 RQGNRLKQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCELEKA 271

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 63/281 (22%), Positives = 123/281 (43%), Gaps = 48/281 (17%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWL---RVIGGLRHSNIVSIRAY 395
           + LG G  G  +    +G   V +K +++       + +L    ++  L+H  +V + A 
Sbjct: 12  KKLGAGQFGEVWMGYYNGHTKVAIKSLKQ--GSMSPEAFLAEANLMKQLQHPRLVRLYAV 69

Query: 396 CNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAH 455
              ++ ++++ +Y+ +GSL   L    G  ++ +  NK + +A+  A+G+AF+   N   
Sbjct: 70  VT-QEPIYIITEYMENGSLVDFLKTPEGI-KLTI--NKLIDMAAQIAEGMAFIERKN--- 122

Query: 456 LFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE-----LKFNNNNNYSQ 510
             H  L ++NI+V +     I+D G+ +L       ++ Y A E     +K+      + 
Sbjct: 123 YIHRDLRAANILVSETLCCKIADFGLARLIE-----DNEYTAREGAKFPIKWTAPEAINY 177

Query: 511 RKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEM 570
             F  + DV+SFG++L EI+T          G + +  M             E+I + E 
Sbjct: 178 GTFTIKSDVWSFGILLTEIVT---------YGRIPYPGMTNP----------EVIQNLER 218

Query: 571 EEEM-------RALLQVALLCLAPLPKDRPNMSIVHRMIED 604
              M         L ++  LC    P++RP    +  ++ED
Sbjct: 219 GYRMPRPDNCPEELYELMRLCWKEKPEERPTFEYLRSVLED 259

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 55.0 bits (132), Expect = 3e-08
 Identities = 58/203 (28%), Positives = 98/203 (48%), Gaps = 32/203 (15%)

Query: 339 ELLGKGCVGATYKVVLDG---GDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAY 395
           E++G+G  GA    VL G   G  V VK I+     +   E   V+  L H N+V +   
Sbjct: 12  EIIGEGEFGA----VLQGEYTGQKVAVKNIKCDVTAQAFLEETAVMTKLHHKNLVRLLGV 67

Query: 396 C--NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNK 453
              NG   L++V + +  G+L + L   R  GR  V   + L+ + D A+G+ +L     
Sbjct: 68  ILHNG---LYIVMELMSKGNLVNFL---RTRGRALVSVIQLLQFSLDVAEGMEYLE---S 118

Query: 454 AHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA-----YNAPELKFNNNNNY 508
             L H  L++ NI+V + G A +SD G+ ++      ++++     + APE   +     
Sbjct: 119 KKLVHRDLAARNILVSEDGVAKVSDFGLARV--GSMGVDNSKLPVKWTAPEALKHK---- 172

Query: 509 SQRKFWQRCDVYSFGVVLLEILT 531
              KF  + DV+S+GV+L E+ +
Sbjct: 173 ---KFSSKSDVWSYGVLLWEVFS 192

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 45/224 (20%)

Query: 341 LGKGCVGATYKVVLDGGD--------VVVVKRIRERKKKREVD------EWLRVIGGLRH 386
           LG+GC G        G D         V VK +++    +++       E +++IG  +H
Sbjct: 20  LGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIG--KH 77

Query: 387 SNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPG--------RMP---VDWNKRL 435
            NI+++   C     L+++ +Y   G+L   L   R PG        ++P   + +   +
Sbjct: 78  KNIINLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLV 137

Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAY 495
             A   A+G+ +L         H  L++ N++V +     I+D G+ +  H   +     
Sbjct: 138 SCAYQVARGMEYL---ASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTT 194

Query: 496 N--------APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           N        APE  F+       R +  + DV+SFGV+L EI T
Sbjct: 195 NGRLPVKWMAPEALFD-------RVYTHQSDVWSFGVLLWEIFT 231

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 58/244 (23%), Positives = 108/244 (44%), Gaps = 49/244 (20%)

Query: 386 HSNIVSIRAYCNGKDELFLVYDYLPHGSL------------HSLLHGSR-----GPGRMP 428
           H NIV +   C     + L+++Y+ +G L             SL H +      G   +P
Sbjct: 67  HPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLP 126

Query: 429 VDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-HQLFHT 487
           +   ++L +A   A G+A+L   ++    H  L++ N +V +     I+D G+   ++  
Sbjct: 127 LSCTEQLCIAKQVAAGMAYL---SERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSA 183

Query: 488 PFFI---NDA----YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGE 540
            ++    NDA    +  PE  F N       ++    DV+++GVVL EI +  M    G 
Sbjct: 184 DYYKASENDAIPIRWMPPESIFYN-------RYTTESDVWAYGVVLWEIFSYGMQPYYG- 235

Query: 541 LGIVKWVQMMGQDESAWEVFDFELIMDKE-MEEEMRALLQVALLCLAPLPKDRPNMSIVH 599
                    M  +E  + V D  ++   +    E+  L++   LC + LP DRP+ + ++
Sbjct: 236 ---------MAHEEVIYYVRDGNVLSCPDNCPLELYNLMR---LCWSKLPSDRPSFASIN 283

Query: 600 RMIE 603
           R+++
Sbjct: 284 RILQ 287

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 55.0 bits (132), Expect = 4e-08
 Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 45/224 (20%)

Query: 341 LGKGCVGATYKVVLDGGD--------VVVVKRIRERKKKREVD------EWLRVIGGLRH 386
           LG+GC G        G D         V VK +++   ++++       E +++IG  +H
Sbjct: 23  LGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG--KH 80

Query: 387 SNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPG--------RMPVDWNKRLKLA 438
            NI+++   C     L+++ +Y   G+L   L   R PG        R+P +      L 
Sbjct: 81  KNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLV 140

Query: 439 SDS---AKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAY 495
           S +   A+G+ +L         H  L++ N++V +     I+D G+ +  +   +     
Sbjct: 141 SCTYQVARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTT 197

Query: 496 N--------APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           N        APE  F+       R +  + DV+SFGV++ EI T
Sbjct: 198 NGRLPVKWMAPEALFD-------RVYTHQSDVWSFGVLMWEIFT 234

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 46/217 (21%)

Query: 341 LGKGCVGATYKVVL----DGGDVVVVKRIR-ERKKKREVDEWLR---VIGGLRHSNIVSI 392
           +G+G  G   K +L    + G   V+K I   +   +E +E  +   V+  ++H NIV  
Sbjct: 8   IGEGSFG---KAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQY 64

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRG---PGRMPVDWNKRLKLASDSAKGLAFLH 449
           +        L++V DY   G L+  ++  RG   P    +DW  ++ LA      L  +H
Sbjct: 65  QESFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLA------LKHVH 118

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----------TPFFINDAYNAP 498
                 + H  + S NI + + G   + D G+ ++ +           TP+++     +P
Sbjct: 119 ---DRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTPYYL-----SP 170

Query: 499 ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA 535
           E+  N       R +  + D+++ G VL E+ T K A
Sbjct: 171 EICEN-------RPYNNKSDIWALGCVLYEMCTLKHA 200

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 59/234 (25%), Positives = 107/234 (45%), Gaps = 29/234 (12%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREV-DEWLRVIGGLR---HSNIVSIR 393
           E +G+G  G  YK      G+VV +K+IR   +   V    +R I  L+   H NIV + 
Sbjct: 6   EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLL 65

Query: 394 AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPG-RMPVDWNKRLKLASDSAKGLAFLHGYN 452
              + +++L+LV+++L H  L   +  S   G  +P+  +   +L      GLAF H + 
Sbjct: 66  DVIHTENKLYLVFEFL-HQDLKKFMDASPLSGIPLPLIKSYLFQLLQ----GLAFCHSH- 119

Query: 453 KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FINDAYNAPELKFNNNN 506
              + H  L   N++++  G   ++D G+ + F  P        +   Y APE+      
Sbjct: 120 --RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGC-- 175

Query: 507 NYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELG-IVKWVQMMGQ-DESAW 557
               + +    D++S G +  E++T + +  GD E+  + +  + +G  DE  W
Sbjct: 176 ----KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVW 225

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 56/234 (23%), Positives = 101/234 (43%), Gaps = 55/234 (23%)

Query: 341 LGKGCVGATYKVV-LDGGDVVVVKRIRERKKK--------REVDEWLRVIGGLRHSNIVS 391
           +G+G  G  YK    D G++V +K++R   +K        RE+    +++  L H NIV+
Sbjct: 15  IGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREI----KILRQLNHRNIVN 70

Query: 392 IRAYCNGKDE----------LFLVYDYLPH---GSLHSLLHGSRGPGRMPVDWNKR--LK 436
           ++     K +           +LV++Y+ H   G L S L          V +++     
Sbjct: 71  LKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGL----------VHFSEDHIKS 120

Query: 437 LASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-------TPF 489
                 +GL + H   K +  H  +  SNI+++  G   ++D G+ +L++       T  
Sbjct: 121 FMKQLLEGLNYCH---KKNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNK 177

Query: 490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELG 542
            I   Y  PEL         + ++    DV+S G +L E+ T K + + + EL 
Sbjct: 178 VITLWYRPPELLL------GEERYGPAIDVWSCGCILGELFTKKPIFQANQELA 225

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.0 bits (135), Expect = 5e-08
 Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 3/138 (2%)

Query: 69  RVIKLVLEDLDLTGP-AEVLSRLTQLRLLSL-KNNLLSSSNLNLSSWPHLKHLYLSHNRF 126
           ++I L L D  L+G   E++ +L  L +L L  NN      + L+S P L+ L L  N+F
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Query: 127 TGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSS 186
           +G  P  +    +L  +DLS N   GEIP   L    NL  L L  N   G +     + 
Sbjct: 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG-LCSSGNLFKLILFSNSLEGEIPKSLGAC 403

Query: 187 RSILDFNVSNNQLSGQIP 204
           RS+    + +N  SG++P
Sbjct: 404 RSLRRVRLQDNSFSGELP 421

Length = 968

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 33/189 (17%)

Query: 360 VVVKRIRE-RKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLL 418
           V +K I+E    + E  E  +V+  L H  +V +   C  +  +++V +Y+ +G L + L
Sbjct: 31  VAIKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYL 90

Query: 419 HGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISD 478
               G    P    + L++  D  +G+A+L         H  L++ N +VD  G   +SD
Sbjct: 91  R-EHGKRFQPS---QLLEMCKDVCEGMAYLESK---QFIHRDLAARNCLVDDQGCVKVSD 143

Query: 479 IGVHQLFHTPFFINDAY------------NAPELKFNNNNNYSQRKFWQRCDVYSFGVVL 526
            G+     + + ++D Y            + PE+       YS  KF  + DV++FGV++
Sbjct: 144 FGL-----SRYVLDDEYTSSVGSKFPVRWSPPEVLL-----YS--KFSSKSDVWAFGVLM 191

Query: 527 LEILT-GKM 534
            E+ + GKM
Sbjct: 192 WEVYSLGKM 200

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 54.6 bits (131), Expect = 6e-08
 Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 45/224 (20%)

Query: 341 LGKGCVGATYKVVLDGGD--------VVVVKRIRERKKKREVD------EWLRVIGGLRH 386
           LG+GC G   +    G D         V VK +++    +++       E +++IG  +H
Sbjct: 20  LGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIG--KH 77

Query: 387 SNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPG-----------RMPVDWNKRL 435
            NI+++   C  +  L+++ +Y   G+L   L   R PG              + +   +
Sbjct: 78  KNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLV 137

Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAY 495
             A   A+G+ +L         H  L++ N++V +     I+D G+ +  H   +     
Sbjct: 138 SCAYQVARGMEYLE---SRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTS 194

Query: 496 N--------APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           N        APE  F+       R +  + DV+SFG+++ EI T
Sbjct: 195 NGRLPVKWMAPEALFD-------RVYTHQSDVWSFGILMWEIFT 231

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 54.2 bits (130), Expect = 8e-08
 Identities = 70/295 (23%), Positives = 130/295 (44%), Gaps = 47/295 (15%)

Query: 339 ELLGKGCVGATYKVVL--DGGDV-VVVKRIRERKKK---REVDEWLRVIGGL-RHSNIVS 391
           +++G+G  G   K  +  DG  +   +KR++E   K   R+    L V+  L  H NI++
Sbjct: 13  DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 72

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMP-----------VDWNKRLKLASD 440
           +   C  +  L+L  +Y PHG+L   L  SR     P           +   + L  A+D
Sbjct: 73  LLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAAD 132

Query: 441 SAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPEL 500
            A+G+ +L   ++    H  L++ NI+V +   A I+D G+ +      ++        +
Sbjct: 133 VARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSR--GQEVYVKKTMGRLPV 187

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQD--ESAWE 558
           ++    + +   +    DV+S+GV+L EI++         LG   +  M   +  E   +
Sbjct: 188 RWMAIESLNYSVYTTNSDVWSYGVLLWEIVS---------LGGTPYCGMTCAELYEKLPQ 238

Query: 559 VFDFE--LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIV----HRMIEDIRT 607
            +  E  L  D E+ + MR        C    P +RP+ + +    +RM+E+ +T
Sbjct: 239 GYRLEKPLNCDDEVYDLMRQ-------CWREKPYERPSFAQILVSLNRMLEERKT 286

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 53.5 bits (128), Expect = 9e-08
 Identities = 49/211 (23%), Positives = 94/211 (44%), Gaps = 23/211 (10%)

Query: 339 ELLGKGCVGATYKVVL--DG----GDVVVVKRIRERKKKREVDEWLRVIGGL-RHSNIVS 391
           +++G+G  G   K  +  DG      +  +K    +   R+    L V+  L  H NI++
Sbjct: 1   DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 60

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMP-----------VDWNKRLKLASD 440
           +   C  +  L+L  +Y PHG+L   L  SR     P           +   + L  A+D
Sbjct: 61  LLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAAD 120

Query: 441 SAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPEL 500
            A+G+ +L   ++    H  L++ NI+V +   A I+D G+ +      ++        +
Sbjct: 121 VARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSR--GQEVYVKKTMGRLPV 175

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           ++    + +   +    DV+S+GV+L EI++
Sbjct: 176 RWMAIESLNYSVYTTNSDVWSYGVLLWEIVS 206

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 57/277 (20%), Positives = 120/277 (43%), Gaps = 44/277 (15%)

Query: 341 LGKGCVGATYKVVLDGGDVVVVKRIRERKKKRE--VDEWLRVIGGLRHSNIVSIRAYCNG 398
           LG G  G  +    +    V VK ++      E  + E   V+  L+H  +V + A    
Sbjct: 14  LGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAE-ANVMKTLQHDKLVKLHAVVT- 71

Query: 399 KDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFH 458
           K+ ++++ +++  GSL   L    G  + P+   K +  ++  A+G+AF+    + +  H
Sbjct: 72  KEPIYIITEFMAKGSLLDFLKSDEG-SKQPLP--KLIDFSAQIAEGMAFIE---QRNYIH 125

Query: 459 GHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE-----LKFNNNNNYSQRKF 513
             L ++NI+V       I+D G+ ++       ++ Y A E     +K+      +   F
Sbjct: 126 RDLRAANILVSASLVCKIADFGLARVIE-----DNEYTAREGAKFPIKWTAPEAINFGSF 180

Query: 514 WQRCDVYSFGVVLLEILT-GK-----MAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD 567
             + DV+SFG++L+EI+T G+     M+  +    + +  +M   +    E+++      
Sbjct: 181 TIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYN------ 234

Query: 568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIED 604
                       + + C    P++RP    +  +++D
Sbjct: 235 ------------IMMRCWKNRPEERPTFEYIQSVLDD 259

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 58/289 (20%), Positives = 108/289 (37%), Gaps = 65/289 (22%)

Query: 340 LLGKGCVGATYKVVLDGGD------VVVVKRIRERKK-------KREVDEWLRVIGGLRH 386
            LG+G  G  +     G +      +V+VK +++ K        +RE+D + +    L H
Sbjct: 12  TLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRK----LSH 67

Query: 387 SNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRM----PVDWNKRLKLASDSA 442
            N+V +   C   +  +++ +Y   G L   L  ++         P+   +++ L +  A
Sbjct: 68  KNVVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIA 127

Query: 443 KGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKF 502
            G+  L     A   H  L++ N +V       +S               D YN+   K 
Sbjct: 128 LGMDHLS---NARFVHRDLAARNCLVSSQREVKVS---------LLSLSKDVYNSEYYKL 175

Query: 503 NN--------------NNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWV 547
            N               +++S +      DV+SFGV++ E+ T G++      L   + +
Sbjct: 176 RNALIPLRWLAPEAVQEDDFSTKS-----DVWSFGVLMWEVFTQGELPFYG--LSDEEVL 228

Query: 548 QMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMS 596
             +   +    V +            +  L+     C A  PKDRP+ S
Sbjct: 229 NRLQAGKLELPVPE-------GCPSRLYKLMTR---CWAVNPKDRPSFS 267

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 24/200 (12%)

Query: 341 LGKGCVGATYKVVLDGGDVVVVKRIRERKKKRE--VDEWLRVIGGLRHSNIVSIRAYCNG 398
           LG G  G  +    +G   V VK ++      E  ++E  +++  LRH  +V + A  + 
Sbjct: 14  LGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEE-AQIMKKLRHDKLVQLYAVVS- 71

Query: 399 KDELFLVYDYLPHGSLHSLLHGSRGPG-RMPVDWNKRLKLASDSAKGLAFLHGYNKAHLF 457
           ++ +++V +Y+  GSL   L    G   ++P      + +A+  A G+A++   N     
Sbjct: 72  EEPIYIVTEYMSKGSLLDFLKDGEGRALKLP----NLVDMAAQVAAGMAYIERMN---YI 124

Query: 458 HGHLSSSNIVVDQLGNAC-ISDIGVHQLFHTPFFINDAYNAPE-----LKFNNNNNYSQR 511
           H  L S+NI+V   G  C I+D G+ +L       ++ Y A +     +K+         
Sbjct: 125 HRDLRSANILVGD-GLVCKIADFGLARLIE-----DNEYTARQGAKFPIKWTAPEAALYG 178

Query: 512 KFWQRCDVYSFGVVLLEILT 531
           +F  + DV+SFG++L E++T
Sbjct: 179 RFTIKSDVWSFGILLTELVT 198

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 46/201 (22%)

Query: 357 GDVVVVKRIRERKKKRE--VDEWL--RVIGGLRHSNIVSIRAYCN--GKDELFLVYDYLP 410
           GD+  +K I++    R+  VD+ L  R I     S  V ++ Y +  GK  L+LV +YLP
Sbjct: 18  GDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYV-VKLYYSFQGKKNLYLVMEYLP 76

Query: 411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ 470
            G L SLL      G +  D  +     ++    L +LH      + H  L   NI++D 
Sbjct: 77  GGDLASLLENV---GSLDEDVAR--IYIAEIVLALEYLHSNG---IIHRDLKPDNILIDS 128

Query: 471 LGNACISDIGV-------------------HQLFHTPFFINDAYNAPELKFNNNNNYSQR 511
            G+  ++D G+                    ++  TP +I     APE+     ++ +  
Sbjct: 129 NGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYI-----APEVILGQGHSKT-- 181

Query: 512 KFWQRCDVYSFGVVLLEILTG 532
                 D +S G +L E L G
Sbjct: 182 -----VDWWSLGCILYEFLVG 197

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 66/287 (22%), Positives = 110/287 (38%), Gaps = 58/287 (20%)

Query: 340 LLGKGCVGATYKVVLDGGDV-----VVVKRIRERKKKREVD---EWLRVIGGLRHSNIVS 391
           +LGKG    TY +V    D+     + +K I ER   R V    E + +   L+H NIV 
Sbjct: 15  VLGKG----TYGIVYAARDLSTQVRIAIKEIPERDS-RYVQPLHEEIALHSYLKHRNIVQ 69

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY 451
                +      +  + +P GSL +LL    GP  +  +    +       +GL +LH  
Sbjct: 70  YLGSDSENGFFKIFMEQVPGGSLSALLRSKWGP--LKDNEQTIIFYTKQILEGLKYLH-- 125

Query: 452 NKAHLFHGHLSSSNIVVDQLGNAC-ISDIGVHQLFH-----TPFFIND-AYNAPELKFNN 504
               + H  +   N++V+       ISD G  +        T  F     Y APE+    
Sbjct: 126 -DNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVI--- 181

Query: 505 NNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL 564
             +   R +    D++S G  ++E+ TGK                +G+ ++A     F++
Sbjct: 182 --DKGPRGYGAPADIWSLGCTIVEMATGKPP-----------FIELGEPQAAM----FKV 224

Query: 565 IMDK-------EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIED 604
            M K        +  E +  +   L C  P P  R      H +++D
Sbjct: 225 GMFKIHPEIPESLSAEAKNFI---LRCFEPDPDKRA---SAHDLLQD 265

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 45/224 (20%)

Query: 341 LGKGCVGATYKVVLDGGDV--------VVVKRIRERKKKREVD------EWLRVIGGLRH 386
           LG+GC G        G D         V VK ++    ++++       E +++IG  +H
Sbjct: 26  LGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG--KH 83

Query: 387 SNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPG--------RMPVD---WNKRL 435
            NI+++   C     L+++ +Y   G+L   L   R PG        ++P +   +   +
Sbjct: 84  KNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLV 143

Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAY 495
             A   A+G+ +L         H  L++ N++V +     I+D G+ +  H   +     
Sbjct: 144 SCAYQVARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTT 200

Query: 496 N--------APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           N        APE  F+       R +  + DV+SFGV+L EI T
Sbjct: 201 NGRLPVKWMAPEALFD-------RIYTHQSDVWSFGVLLWEIFT 237

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 67/284 (23%), Positives = 118/284 (41%), Gaps = 35/284 (12%)

Query: 341 LGKGCVGATYK-----VVLDGGDV-VVVKRIRERKKKREVDEWLR---VIGGLRHSNIVS 391
           LG+G  G  Y+     ++    +  V VK + E    RE  E+L    V+ G    ++V 
Sbjct: 14  LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 73

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSR-----GPGRMPVDWNKRLKLASDSAKGLA 446
           +    +      +V + + HG L S L   R      PGR P    + +++A++ A G+A
Sbjct: 74  LLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMA 133

Query: 447 FLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-HQLFHTPFFINDAYNAPELKFNNN 505
           +L   N     H  L++ N +V       I D G+   ++ T ++         +++   
Sbjct: 134 YL---NAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAP 190

Query: 506 NNYSQRKFWQRCDVYSFGVVLLEI--LTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE 563
            +     F    D++SFGVVL EI  L  +  +G     ++K+V   G            
Sbjct: 191 ESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGY----------- 239

Query: 564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPN-MSIVHRMIEDIR 606
           L       E +  L++   +C    PK RP  + IV+ + +D+ 
Sbjct: 240 LDQPDNCPERVTDLMR---MCWQFNPKMRPTFLEIVNLLKDDLH 280

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 37/238 (15%)

Query: 339 ELLGKGCVGATYKVVLDG-----GDVVVVKRIRERKKKREVDEWLRVIG---GLRHSNIV 390
           E LG+G    TY  V  G     G++V +K I    ++      +R I     L+H NIV
Sbjct: 6   EKLGEG----TYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIV 61

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLL--HGSRGPGRMPVDWNKRLKLASDSAKGLAFL 448
            +    + +++L LV++Y+    L   +  HG RG     +D N          KG+AF 
Sbjct: 62  RLHDVIHTENKLMLVFEYM-DKDLKKYMDTHGVRG----ALDPNTVKSFTYQLLKGIAFC 116

Query: 449 HGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF--FINDA----YNAPELKF 502
           H   +  + H  L   N+++++ G   ++D G+ + F  P   F N+     Y AP++  
Sbjct: 117 H---ENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLL 173

Query: 503 NNNNNYSQRKFWQRCDVYSFGVVLLEILTGK--MAKGDGELGIVKWVQMMGQ-DESAW 557
            +      R +    D++S G ++ E++TG+      + E  ++K  ++MG   ES W
Sbjct: 174 GS------RTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTW 225

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 53.7 bits (129), Expect = 3e-07
 Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 90  LTQLRLLSLKNNLLSSSNLNL-SSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN 148
           L +L  L L +N LS     L     +L+ L+L  N FTG  P  ++SL  L+ + L  N
Sbjct: 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342

Query: 149 AYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMS 208
            + GEIP   L +  NL  L L  N  TG +     SS ++    + +N L G+IP  + 
Sbjct: 343 KFSGEIP-KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401

Length = 968

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 51.6 bits (123), Expect = 4e-07
 Identities = 47/201 (23%), Positives = 96/201 (47%), Gaps = 22/201 (10%)

Query: 384 LRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAK 443
           L+H  +V + A    ++ ++++ +Y+  GSL   L    G G++ +   K +  ++  A+
Sbjct: 58  LQHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEG-GKVLLP--KLIDFSAQIAE 114

Query: 444 GLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE---- 499
           G+A++    + +  H  L ++N++V +     I+D G+ ++       ++ Y A E    
Sbjct: 115 GMAYIE---RKNYIHRDLRAANVLVSESLMCKIADFGLARVIE-----DNEYTAREGAKF 166

Query: 500 -LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GK-----MAKGDGELGIVKWVQMMGQ 552
            +K+      +   F  + DV+SFG++L EI+T GK     M+  D    + +  +M   
Sbjct: 167 PIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQRGYRMPRM 226

Query: 553 DESAWEVFDFELIMDKEMEEE 573
           +    E++D      KE  EE
Sbjct: 227 ENCPDELYDIMKTCWKEKAEE 247

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 64/278 (23%), Positives = 112/278 (40%), Gaps = 41/278 (14%)

Query: 341 LGKGCVGATYKVVLDGGDVVVVKRIRERKKKREV-DEWLRVIGGLRHSN---IVSIRAYC 396
           LG G  G+  KV       V+ K++     K  V  + LR +  +       IVS     
Sbjct: 13  LGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAF 72

Query: 397 NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHL 456
             ++ + +  +++  GSL  +    +  G +PV+     K+A    +GL +L  YN   +
Sbjct: 73  LNENNICMCMEFMDCGSLDRIY---KKGGPIPVEILG--KIAVAVVEGLTYL--YNVHRI 125

Query: 457 FHGHLSSSNIVVDQLGNACISDIGVH-QLFHT---PFFINDAYNAPELKFNNNNNYSQRK 512
            H  +  SNI+V+  G   + D GV  +L ++    F     Y +PE        Y+ + 
Sbjct: 126 MHRDIKPSNILVNSRGQIKLCDFGVSGELINSIADTFVGTSTYMSPERI--QGGKYTVKS 183

Query: 513 FWQRCDVYSFGVVLLEILTGK----MAKGD-----GELGIVKWVQMMGQDESAWEVFDFE 563
                DV+S G+ ++E+  GK     +  D       +GI+  +Q + Q+          
Sbjct: 184 -----DVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPP------R 232

Query: 564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM 601
           L       E++R  +     CL   P +RP    +  M
Sbjct: 233 LPSSD-FPEDLRDFVD---ACLLKDPTERPTPQQLCAM 266

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 51.5 bits (123), Expect = 5e-07
 Identities = 64/299 (21%), Positives = 118/299 (39%), Gaps = 48/299 (16%)

Query: 341 LGKGCVGATYKVV------LDGGDVVVVKRIRERKKKREVDEWL---RVIGGLRHSNIVS 391
           LG+G  G   K          G   V VK ++E     E+ + L    ++  + H +++ 
Sbjct: 8   LGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIK 67

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSR-------------------GPGRMPVDWN 432
           +   C+    L L+ +Y  +GSL S L  SR                    P    +   
Sbjct: 68  LYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMG 127

Query: 433 KRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ-LFHTPFFI 491
             +  A   ++G+ +L    +  L H  L++ N++V +     ISD G+ + ++    ++
Sbjct: 128 DLISFAWQISRGMQYL---AEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYV 184

Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMG 551
             +     +K+    +     +  + DV+SFGV+L EI+T     G+   GI        
Sbjct: 185 KRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVT---LGGNPYPGIAP------ 235

Query: 552 QDESAWEVFDFELIMDK--EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK 608
             E  + +      M++     EEM  L+   L C    P  RP  + + + +E +  K
Sbjct: 236 --ERLFNLLKTGYRMERPENCSEEMYNLM---LTCWKQEPDKRPTFADISKELEKMMVK 289

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 51.2 bits (122), Expect = 6e-07
 Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 26/215 (12%)

Query: 339 ELLGKGCVGATYKVVL-----DGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIV 390
           E LG+   G  YK  L     D   +V +K +++    ++  E+ +   ++  L H NIV
Sbjct: 11  EELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIV 70

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLL------------HGSRGPGRMPVDWNKRLKLA 438
            +      +  + ++++YL  G LH  L                G  +  +D    L +A
Sbjct: 71  CLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIA 130

Query: 439 SDSAKGLAFLHGYNKAHLF-HGHLSSSNIVVDQLGNACISDIGV-HQLFHTPFFINDAYN 496
              A G+ +L     +H F H  L++ NI++ +  +  ISD+G+  +++   ++     +
Sbjct: 131 IQIAAGMEYL----SSHFFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKS 186

Query: 497 APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
              +++         KF    D++SFGVVL EI +
Sbjct: 187 LLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFS 221

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 51.2 bits (122), Expect = 6e-07
 Identities = 47/211 (22%), Positives = 98/211 (46%), Gaps = 23/211 (10%)

Query: 339 ELLGKGCVGATYKVVL--DGGDV-VVVKRIRE---RKKKREVDEWLRVIGGL-RHSNIVS 391
           +++G+G  G   + ++  DG  +   +K ++E       R+    L V+  L  H NI++
Sbjct: 8   DVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIIN 67

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMP-----------VDWNKRLKLASD 440
           +   C  +  L++  +Y P+G+L   L  SR     P           +   + L+ ASD
Sbjct: 68  LLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASD 127

Query: 441 SAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPEL 500
            A G+ +L   ++    H  L++ N++V +   + I+D G+ +      ++        +
Sbjct: 128 VATGMQYL---SEKQFIHRDLAARNVLVGENLASKIADFGLSR--GEEVYVKKTMGRLPV 182

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           ++    + +   +  + DV+SFGV+L EI++
Sbjct: 183 RWMAIESLNYSVYTTKSDVWSFGVLLWEIVS 213

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 50.8 bits (121), Expect = 7e-07
 Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 18/206 (8%)

Query: 341 LGKGCVGATYK-----VVLDGGDV-VVVKRIRERKKKREVDEWLRVIGGLRHSN---IVS 391
           LG+G  G  Y+     VV D  +  V +K + E    RE  E+L     ++  N   +V 
Sbjct: 14  LGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR 73

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSR-----GPGRMPVDWNKRLKLASDSAKGLA 446
           +    +      ++ + +  G L S L   R      P + P    K +++A + A G+A
Sbjct: 74  LLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMA 133

Query: 447 FLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-HQLFHTPFFINDAYNAPELKFNNN 505
           +L   N     H  L++ N +V +     I D G+   ++ T ++         +++ + 
Sbjct: 134 YL---NANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSP 190

Query: 506 NNYSQRKFWQRCDVYSFGVVLLEILT 531
            +     F    DV+SFGVVL EI T
Sbjct: 191 ESLKDGVFTTYSDVWSFGVVLWEIAT 216

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 50/212 (23%), Positives = 91/212 (42%), Gaps = 38/212 (17%)

Query: 339 ELLGKGCVGATYK-VVLDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRA 394
           EL+G+G  GA Y+   +  G VV +K I       +V +  R   ++  LR S   +I  
Sbjct: 7   ELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITK 66

Query: 395 Y--CNGKD-ELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY 451
           Y     K   L+++ +Y   GS+ +L+         P+       +  +    L ++H  
Sbjct: 67  YYGSYLKGPRLWIIMEYAEGGSVRTLMKAG------PIAEKYISVIIREVLVALKYIH-- 118

Query: 452 NKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----------TPFFINDAYNAPEL 500
            K  + H  + ++NI+V   GN  + D GV  L +           TP+++     APE+
Sbjct: 119 -KVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYWM-----APEV 172

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
                     + +  + D++S G+ + E+ TG
Sbjct: 173 ITEG------KYYDTKADIWSLGITIYEMATG 198

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 40/215 (18%)

Query: 349 TYKVV-----LDGGDVVVVKRIRERKKK--------REVDEWLRVIGGLRHSNIVSIRAY 395
           TY VV        G++V +K+++  K+K        RE++  L+    L+H NIV+++  
Sbjct: 17  TYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLK----LQHPNIVTVKEV 72

Query: 396 CNGK--DELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNK 453
             G   D++++V +Y+ H  L SL+   + P          L+L S    G+A LH    
Sbjct: 73  VVGSNLDKIYMVMEYVEH-DLKSLMETMKQPFLQSEVKCLMLQLLS----GVAHLH---D 124

Query: 454 AHLFHGHLSSSNIVVDQLGNACISDIGVHQLF------HTPFFINDAYNAPELKFNNNNN 507
             + H  L +SN++++  G   I D G+ + +      +T   +   Y APEL       
Sbjct: 125 NWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLKPYTQLVVTLWYRAPELLL----- 179

Query: 508 YSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL 541
              +++    D++S G +  E+LT K +  G  E+
Sbjct: 180 -GAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEI 213

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 49/239 (20%), Positives = 89/239 (37%), Gaps = 70/239 (29%)

Query: 341 LGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEW----------------LRVIGG 383
           LG+G  G   K      G +V +K+++  +   +V +                 L+++  
Sbjct: 17  LGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNE 76

Query: 384 LRHSNIVSIRA-YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSA 442
           ++H NI+ +   Y    D + LV D +    L  ++             +++++L     
Sbjct: 77  IKHENIMGLVDVYVE-GDFINLVMDIM-ASDLKKVV-------------DRKIRLTESQV 121

Query: 443 K--------GLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA 494
           K        GL  LH +      H  LS +NI ++  G   I+D G+ + +  P + +  
Sbjct: 122 KCILLQILNGLNVLHKWY---FMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTL 178

Query: 495 --------------------YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
                               Y APEL           K+    D++S G +  E+LTGK
Sbjct: 179 SKDETMQRREEMTSKVVTLWYRAPELLMGAE------KYHFAVDMWSVGCIFAELLTGK 231

Length = 335

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 52/223 (23%), Positives = 109/223 (48%), Gaps = 41/223 (18%)

Query: 329 NVGDLLK--SSAELLGKGCVGATYKVV-LDGGDVVVVKRI---RERKKKREVDEWLRVIG 382
           ++GD  K  +  E +G+G  G  +  + +  G  V +K+I   ++ KK+  ++E L V+ 
Sbjct: 13  SIGDPKKKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEIL-VMK 71

Query: 383 GLRHSNIVS-IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDS 441
            L++ NIV+ + ++  G DELF+V +YL  GSL  ++          +D  +   +  + 
Sbjct: 72  ELKNPNIVNFLDSFLVG-DELFVVMEYLAGGSLTDVV------TETCMDEAQIAAVCREC 124

Query: 442 AKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-----------HQLFHTPFF 490
            + L FLH      + H  + S N+++   G+  ++D G              +  TP++
Sbjct: 125 LQALEFLHA---NQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYW 181

Query: 491 INDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           +     APE+        +++ +  + D++S G++ +E++ G+
Sbjct: 182 M-----APEV-------VTRKAYGPKVDIWSLGIMAIEMVEGE 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 26/210 (12%)

Query: 334 LKSSAELLGKGCVGATYKVVLD-GGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSI 392
           L +  E +GKG  G  +K + +    VV +K I   + + E+++  + I  L   +   +
Sbjct: 5   LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYV 64

Query: 393 RAYCNG--KD-ELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH 449
             Y     KD +L+++ +YL  GS   LL     PG  P+D  +   +  +  KGL +LH
Sbjct: 65  TKYYGSYLKDTKLWIIMEYLGGGSALDLLE----PG--PLDETQIATILREILKGLDYLH 118

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVH------QLFHTPFFINDAYNAPELKFN 503
              K    H  + ++N+++ + G   ++D GV       Q+    F     + APE+   
Sbjct: 119 SEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEV--- 172

Query: 504 NNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
                 Q  +  + D++S G+  +E+  G+
Sbjct: 173 ----IKQSAYDSKADIWSLGITAIELAKGE 198

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 63/288 (21%), Positives = 130/288 (45%), Gaps = 41/288 (14%)

Query: 340 LLGKGCVGATYKVVL----DGGDVVVVKRIR-ERKKKREVDEWLRVIGGLR---HSNI-- 389
           +LGKG  G+  +  L         V VK ++ +     +++E+LR    ++   H N+  
Sbjct: 6   MLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIK 65

Query: 390 ---VSIRAYCNGKDEL-FLVYDYLPHGSLHSLLHGSR---GPGRMPVDWNKRLKLASDSA 442
              VS+R+   G+  +  ++  ++ HG LH+ L  SR    P  +P+     ++   D A
Sbjct: 66  LIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPL--QTLVRFMIDIA 123

Query: 443 KGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-HQLFHTPFFINDAYNAPELK 501
            G+ +L   N     H  L++ N ++++    C++D G+  +++   ++     +   +K
Sbjct: 124 SGMEYLSSKN---FIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVK 180

Query: 502 FNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFD 561
           +    + +   +    DV++FGV + EI+T          G   +  +    E++ E+++
Sbjct: 181 WLALESLADNVYTTHSDVWAFGVTMWEIMT---------RGQTPYAGV----ENS-EIYN 226

Query: 562 FELIMDKEMEEEMRALLQVALL---CLAPLPKDRPNMSIVHRMIEDIR 606
           + LI    +++    L  V  L   C +P PK RP+   +   +E I 
Sbjct: 227 Y-LIKGNRLKQPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLELIW 273

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 39/188 (20%), Positives = 76/188 (40%), Gaps = 35/188 (18%)

Query: 360 VVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS 416
           V +K ++     ++  ++L    ++G   H NI+ +         + ++ +Y+ +GSL  
Sbjct: 35  VAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMIITEYMENGSLDK 94

Query: 417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFL--HGYNKAHLFHGHLSSSNIVVDQLGNA 474
            L  + G         + + +    A G+ +L    Y      H  L++ NI+V+     
Sbjct: 95  FLRENDGK----FTVGQLVGMLRGIASGMKYLSEMNY-----VHRDLAARNILVNSNLVC 145

Query: 475 CISDIGVHQLFHTPFFINDAYN-----------APELKFNNNNNYSQRKFWQRCDVYSFG 523
            +SD G+ +           Y            APE         + RKF    DV+SFG
Sbjct: 146 KVSDFGLSRRLEDS---EATYTTKGGKIPIRWTAPE-------AIAYRKFTSASDVWSFG 195

Query: 524 VVLLEILT 531
           +V+ E+++
Sbjct: 196 IVMWEVMS 203

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 44/183 (24%), Positives = 87/183 (47%), Gaps = 13/183 (7%)

Query: 359 VVVVKRIRERKKKREVDEWL---RVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH 415
           +V VK +RE   K   +++L   +++  L+  NI+ + A C   D L ++ +Y+ +G L+
Sbjct: 48  LVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLN 107

Query: 416 SLL--HGSRGPGRMP----VDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD 469
             L  H  +          + ++  + +A+  A G+ +L   N     H  L++ N +V 
Sbjct: 108 QFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLN---FVHRDLATRNCLVG 164

Query: 470 QLGNACISDIGVHQ-LFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLE 528
           +     I+D G+ + L+   ++         +++ +  +    KF    DV++FGV L E
Sbjct: 165 KNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWE 224

Query: 529 ILT 531
           ILT
Sbjct: 225 ILT 227

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 61/228 (26%), Positives = 96/228 (42%), Gaps = 41/228 (17%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDE------WLRVIGGLR---HSN 388
           E +G+G  G  YK    + G +V +K+ R      E+DE       LR I  L+    S 
Sbjct: 7   EKIGEGTYGKVYKARDKNTGKLVALKKTR-----LEMDEEGIPPTALREISLLQMLSESI 61

Query: 389 IVSIRAYC-------NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDS 441
            + +R          NGK  L+LV++YL       +    RGPGR P+            
Sbjct: 62  YI-VRLLDVEHVEEKNGKPSLYLVFEYLDSDLKKFMDSNGRGPGR-PLPAKTIKSFMYQL 119

Query: 442 AKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNAC-ISDIGVHQLFHTPF------FINDA 494
            KG+A  H +    + H  L   N++VD+      I+D+G+ + F  P        +   
Sbjct: 120 LKGVAHCHKHG---VMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVKSYTHEIVTLW 176

Query: 495 YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL 541
           Y APE+    + +YS        D++S G +  E+   + +  GD EL
Sbjct: 177 YRAPEVLL-GSTHYS-----TPVDIWSVGCIFAEMSRKQPLFPGDSEL 218

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 52/212 (24%), Positives = 97/212 (45%), Gaps = 23/212 (10%)

Query: 340 LLGKGCVGATYKVVL--DGGDV---VVVKRIRER---KKKREVDEWLRVIGGLRHSNIVS 391
           +LG G  G  YK +   DG +V   V +K +RE    K  +E+ +   V+ G+    +  
Sbjct: 14  VLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCR 73

Query: 392 IRAYCNGKDELFLVYDYLPHGSL--HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH 449
           +   C     + LV   +P+G L  +   +  R   +  ++W  ++      AKG+++L 
Sbjct: 74  LLGICL-TSTVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQI------AKGMSYLE 126

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--PFFINDAYNAPELKFNNNNN 507
              +  L H  L++ N++V    +  I+D G+ +L       +  D    P +K+    +
Sbjct: 127 ---EVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVP-IKWMALES 182

Query: 508 YSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG 539
              R+F  + DV+S+GV + E++T      DG
Sbjct: 183 ILHRRFTHQSDVWSYGVTVWELMTFGAKPYDG 214

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 4/116 (3%)

Query: 89  RLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN 148
            L +L L S  N+L      +L +   L+ + L  N F+G  PS  + L  +  +D+S+N
Sbjct: 381 NLFKLILFS--NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438

Query: 149 AYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP 204
             +G I  +    +P+L  L L  N+F G L     S R + + ++S NQ SG +P
Sbjct: 439 NLQGRIN-SRKWDMPSLQMLSLARNKFFGGLPDSFGSKR-LENLDLSRNQFSGAVP 492

Length = 968

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 49.1 bits (118), Expect = 3e-06
 Identities = 43/235 (18%), Positives = 84/235 (35%), Gaps = 62/235 (26%)

Query: 339 ELLGKGCVGATYKVVL-DGGDVVVVKR------IRERKKK---REVDEWLRVIGGLRHSN 388
           +++G+G           +      +K       I+E+K K    E +   R+ G   H  
Sbjct: 7   KIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNG---HPG 63

Query: 389 IVSIRAYCNGKDE--LFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAK--- 443
           I  I+ Y   +DE  L+ V +Y P+G L   +              K   L     +   
Sbjct: 64  I--IKLYYTFQDEENLYFVLEYAPNGELLQYIR-------------KYGSLDEKCTRFYA 108

Query: 444 -----GLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAP 498
                 L +LH      + H  L   NI++D+  +  I+D G  ++        ++    
Sbjct: 109 AEILLALEYLHSKG---IIHRDLKPENILLDKDMHIKITDFGTAKVLDPN-SSPESNKGD 164

Query: 499 ELKFNNNNNYSQRKF----------------WQRC----DVYSFGVVLLEILTGK 533
               ++    ++R+F                 +      D+++ G ++ ++LTGK
Sbjct: 165 ATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGK 219

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 49.3 bits (117), Expect = 3e-06
 Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 29/208 (13%)

Query: 339 ELLGKGCVGATYK--VVLDGGDV---VVVKRIRERKKKRE----VDEWLRVIGGLRHSNI 389
           ++LG G  G  YK   V +G  V   V +K + E    +     +DE L ++  + H ++
Sbjct: 13  KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEAL-IMASMDHPHL 71

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGP--GRMPVDWNKRLKLASDSAKGLAF 447
           V +   C     + LV   +PHG L   +H  +     ++ ++W  ++      AKG+ +
Sbjct: 72  VRLLGVCLSP-TIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQI------AKGMMY 124

Query: 448 LHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAP----ELKFN 503
           L    +  L H  L++ N++V    +  I+D G+ +L          YNA      +K+ 
Sbjct: 125 LE---ERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGD---EKEYNADGGKMPIKWM 178

Query: 504 NNNNYSQRKFWQRCDVYSFGVVLLEILT 531
                  RKF  + DV+S+GV + E++T
Sbjct: 179 ALECIHYRKFTHQSDVWSYGVTIWELMT 206

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 70/290 (24%), Positives = 116/290 (40%), Gaps = 57/290 (19%)

Query: 341 LGKGCVGATYKVVLDG---GDV---VVVKRIRERKKKREVDEWLR---VIGGLRHSNIVS 391
           LG+G  G  Y+ +  G   G+    V +K + E    RE  E+L    V+      ++V 
Sbjct: 14  LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVR 73

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSR-----GPGRMPVDWNKRLKLASDSAKGLA 446
           +    +      +V + +  G L S L   R      PG  P    K +++A++ A G+A
Sbjct: 74  LLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMA 133

Query: 447 FLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ-LFHTPFFINDA-------YNAP 498
           +L         H  L++ N +V +     I D G+ + ++ T ++           + AP
Sbjct: 134 YLA---AKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAP 190

Query: 499 E-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAW 557
           E LK           F  + DV+SFGVVL E+ T         L      +   Q  S  
Sbjct: 191 ESLK--------DGVFTTKSDVWSFGVVLWEMAT---------LA-----EQPYQGLSNE 228

Query: 558 EVFDFEL---IMDK--EMEEEMRALLQVALLCLAPLPKDRPNMS-IVHRM 601
           EV  F +    +D      +++  L++   +C    PK RP    IV  +
Sbjct: 229 EVLKFVIDGGHLDLPENCPDKLLELMR---MCWQYNPKMRPTFLEIVSSL 275

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 50/211 (23%), Positives = 103/211 (48%), Gaps = 39/211 (18%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRI---RERKKKREVDEWLRVIGGLRHSNIVS-IR 393
           E +G+G  G  Y  + +  G  V +K++   ++ KK+  ++E L V+   +H NIV+ + 
Sbjct: 25  EKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEIL-VMRENKHPNIVNYLD 83

Query: 394 AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNK 453
           +Y  G DEL++V +YL  GSL  ++  +       +D  +   +  +  + L FLH    
Sbjct: 84  SYLVG-DELWVVMEYLAGGSLTDVVTETC------MDEGQIAAVCRECLQALEFLHS--- 133

Query: 454 AHLFHGHLSSSNIVVDQLGNACISDIGV-----------HQLFHTPFFINDAYNAPELKF 502
             + H  + S NI++   G+  ++D G              +  TP+++     APE+  
Sbjct: 134 NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWM-----APEV-- 186

Query: 503 NNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
                 +++ +  + D++S G++ +E++ G+
Sbjct: 187 -----VTRKAYGPKVDIWSLGIMAIEMVEGE 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 21/194 (10%)

Query: 352 VVLDGGDVVVVKRIRE---RKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY 408
              D   +V VK +R       + +  + ++++  L   NI  +   C     L ++ +Y
Sbjct: 41  DNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARLLGVCTVDPPLCMIMEY 100

Query: 409 LPHGSL------HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLS 462
           + +G L      H             + ++  L +A+  A G+ +L   N     H  L+
Sbjct: 101 MENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLN---FVHRDLA 157

Query: 463 SSNIVVDQLGNACISDIGVHQLFHTPFFINDAY----NAP-ELKFNNNNNYSQRKFWQRC 517
           + N +V +     I+D G+ +      + +D Y     AP  +++    +    KF  + 
Sbjct: 158 TRNCLVGKNYTIKIADFGMSR----NLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKS 213

Query: 518 DVYSFGVVLLEILT 531
           DV++FGV L EILT
Sbjct: 214 DVWAFGVTLWEILT 227

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 53/236 (22%), Positives = 101/236 (42%), Gaps = 33/236 (13%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREV-DEWLRVIG---GLRHSNIVSIR 393
           E +G+G  G  YK      G++V +K+IR   +   V    +R I     L H NIV + 
Sbjct: 5   EKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLL 64

Query: 394 AYCNGKDELFLVYDYLPHG---SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
              + +++L+LV+++L       + S       P  +               +G+A+ H 
Sbjct: 65  DVVHSENKLYLVFEFLDLDLKKYMDSSPLTGLDPPLIK-------SYLYQLLQGIAYCHS 117

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FINDAYNAPELKFNN 504
           +    + H  L   N+++D+ G   ++D G+ + F  P        +   Y APE+    
Sbjct: 118 H---RVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILL-- 172

Query: 505 NNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELG-IVKWVQMMGQ-DESAW 557
                 R++    D++S G +  E++  + +  GD E+  + +  + +G  DE  W
Sbjct: 173 ----GSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVW 224

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 47.6 bits (114), Expect = 8e-06
 Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 41/219 (18%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRI-----RERKKKREVDEWLRVIGGLRHSNIVSI 392
           E +GKG  G   KV     G ++V K I      E++K++ V E + ++  L+H NIV  
Sbjct: 6   ETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSE-VNILRELKHPNIV-- 62

Query: 393 RAYCN-----GKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAF 447
             Y +         L++V +Y   G L  L+   +   +  ++     ++ +     L  
Sbjct: 63  -RYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKY-IEEEFIWRILTQLLLALYE 120

Query: 448 LH--GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----------TPFFINDA 494
            H        + H  L  +NI +D   N  + D G+ ++             TP+     
Sbjct: 121 CHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPY----- 175

Query: 495 YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           Y +PE    N+ +Y      ++ D++S G ++ E+    
Sbjct: 176 YMSPEQL--NHMSYD-----EKSDIWSLGCLIYELCALS 207

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 61/242 (25%), Positives = 109/242 (45%), Gaps = 44/242 (18%)

Query: 339 ELLGKGCVGATYKVVLDGGD-----VVVVKRIRERKKKREV-DEWLRVIGGL---RHSNI 389
           E +G+G    TY VV    D      + +K+IR  ++   V    +R I  L   +H NI
Sbjct: 8   EKIGEG----TYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNI 63

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLAS----DSAKGL 445
           V ++   + +  L+LV++YL    L    H    P     D+ K  +L         +G+
Sbjct: 64  VRLQDVVHSEKRLYLVFEYL---DLDLKKHMDSSP-----DFAKNPRLIKTYLYQILRGI 115

Query: 446 AFLHGYNKAHLFHGHLSSSNIVVDQLGNAC-ISDIGVHQLFHTPF--FINDA----YNAP 498
           A+ H +    + H  L   N+++D+  NA  ++D G+ + F  P   F ++     Y AP
Sbjct: 116 AYCHSH---RVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAP 172

Query: 499 ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELG-IVKWVQMMGQ-DES 555
           E+   +      R +    D++S G +  E++  K +  GD E+  + K  +++G  +E 
Sbjct: 173 EILLGS------RHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEE 226

Query: 556 AW 557
            W
Sbjct: 227 TW 228

Length = 294

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 38/178 (21%), Positives = 73/178 (41%), Gaps = 24/178 (13%)

Query: 363 KRIRERKKKREVDEWLRVIGGLRHSNIVSIR-AYCNGKDELFLVYDYLPHGSLHSLLHGS 421
           ++  E+   R V    R++  L H  +V++  ++ + ++ ++LV D L  G L    H S
Sbjct: 36  QKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEEN-MYLVVDLLLGGDLR--YHLS 92

Query: 422 RGPGRMPVDWNKRLKL-ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIG 480
           +   +   +   ++K    +    L +LH      + H  +   NI++D+ G+  I+D  
Sbjct: 93  QK-VKFSEE---QVKFWICEIVLALEYLHSKG---IIHRDIKPDNILLDEQGHVHITDFN 145

Query: 481 VHQLFHTPFFIND-----AYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           +                  Y APE+         ++ +    D +S GV   E L GK
Sbjct: 146 IATKVTPDTLTTSTSGTPGYMAPEV-------LCRQGYSVAVDWWSLGVTAYECLRGK 196

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 9e-06
 Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 11/114 (9%)

Query: 52  DPCFDS---WRGVTC---NPSTHRVIK-LVLEDLDLTG--PAEVLSRLTQLRLLSLKNNL 102
           DPC      W G  C   +      I  L L++  L G  P ++ S+L  L+ ++L  N 
Sbjct: 395 DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNS 453

Query: 103 LSSS-NLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIP 155
           +  +   +L S   L+ L LS+N F G+ P  +  L  LR ++L+ N+  G +P
Sbjct: 454 IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 47.7 bits (113), Expect = 9e-06
 Identities = 55/226 (24%), Positives = 92/226 (40%), Gaps = 48/226 (21%)

Query: 339 ELLGKGCVGATYKVVLDG------GDVVVVKRIRERKK---KREVDEWLRVIGGLRHSNI 389
           E LG+   G  YK  L G         V +K ++++ +   + E      +   L+H NI
Sbjct: 11  EELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNI 70

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLL-----H---GSRGPGRM------PVDWNKRL 435
           V +      +  L +++ Y  H  LH  L     H   GS    +       P D+   +
Sbjct: 71  VCLLGVVTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADF---V 127

Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAY 495
            + +  A G+ FL  +   H+ H  L++ N++V    N  ISD+G+ +         + Y
Sbjct: 128 HIVTQIAAGMEFLSSH---HVVHKDLATRNVLVFDKLNVKISDLGLFR---------EVY 175

Query: 496 NAPELKFNNNNNYSQR----------KFWQRCDVYSFGVVLLEILT 531
            A   K   N+    R          KF    D++S+GVVL E+ +
Sbjct: 176 AADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFS 221

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 47.4 bits (112), Expect = 9e-06
 Identities = 53/223 (23%), Positives = 107/223 (47%), Gaps = 41/223 (18%)

Query: 329 NVGDLLK--SSAELLGKGCVGATYKV--VLDGGDVVVVKRIRERKKKRE--VDEWLRVIG 382
           +VGD  K  +  E +G+G  G  Y    V  G +V + +   +++ K+E  ++E L V+ 
Sbjct: 14  SVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEIL-VMR 72

Query: 383 GLRHSNIVS-IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDS 441
             ++ NIV+ + +Y  G DEL++V +YL  GSL  ++          +D  +   +  + 
Sbjct: 73  ENKNPNIVNYLDSYLVG-DELWVVMEYLAGGSLTDVV------TETCMDEGQIAAVCREC 125

Query: 442 AKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-----------HQLFHTPFF 490
            + L FLH      + H  + S NI++   G+  ++D G              +  TP++
Sbjct: 126 LQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYW 182

Query: 491 INDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           +     APE+        +++ +  + D++S G++ +E++ G+
Sbjct: 183 M-----APEV-------VTRKAYGPKVDIWSLGIMAIEMIEGE 213

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 61/276 (22%), Positives = 107/276 (38%), Gaps = 46/276 (16%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRE-RKKKREVDEW-------LRVIGGLRHSNI 389
           + LG G   + Y+   +  G ++ VK++   R    E +E        +R++  L H +I
Sbjct: 6   QQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHI 65

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH 449
           + +           L  +++  GS+  LL    G  +  V  N   +L     +GL++LH
Sbjct: 66  IRMLGATCEDSHFNLFVEWMAGGSVSHLLS-KYGAFKEAVIINYTEQLL----RGLSYLH 120

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNAC-ISDIGVH----------QLFHTPFFINDAYNAP 498
              +  + H  +  +N+++D  G    I+D G              F        A+ AP
Sbjct: 121 ---ENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAP 177

Query: 499 ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE 558
           E+        S       CDV+S G V++E+ T K      +      + ++ +  SA  
Sbjct: 178 EVLRGEQYGRS-------CDVWSVGCVIIEMATAKPPWNAEK--HSNHLALIFKIASATT 228

Query: 559 VFDFELIMDKEMEEEMR-ALLQVALLCLAPLPKDRP 593
                      + E +   L  V L CL   P+DRP
Sbjct: 229 APS--------IPEHLSPGLRDVTLRCLELQPEDRP 256

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 51/213 (23%), Positives = 91/213 (42%), Gaps = 42/213 (19%)

Query: 339 ELLGKGCVGATYK-VVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAY-- 395
           E +GKG  G  YK +      VV +K I   + + E+++  + I  L       I  Y  
Sbjct: 7   ECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYG 66

Query: 396 CNGKD-ELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLAS---DSAKGLAFLHGY 451
              K  +L+++ +Y   GS   LL     PG++         +A    +   GL +LH  
Sbjct: 67  SFLKGSKLWIIMEYCGGGSCLDLLK----PGKLDET-----YIAFILREVLLGLEYLHEE 117

Query: 452 NKAHLFHGHLSSSNIVVDQLGNACISDIGVH-QLFH----------TPFFINDAYNAPEL 500
            K    H  + ++NI++ + G+  ++D GV  QL            TPF++     APE+
Sbjct: 118 GK---IHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWM-----APEV 169

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
              +  +        + D++S G+  +E+  G+
Sbjct: 170 IKQSGYDE-------KADIWSLGITAIELAKGE 195

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 47/214 (21%), Positives = 86/214 (40%), Gaps = 36/214 (16%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR----ERKKKREVDEW---LRVIGGLRHSNIV 390
           +LLG+G  G  Y    +D G  + VK++       + K+EV+     ++++  L+H  IV
Sbjct: 8   KLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIV 67

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLL--HGSRGPGRMPVDWNKRLKLASDSAKGLAFL 448
                    + L +  +Y+P GS+   L  +G        +      K      +G+ +L
Sbjct: 68  QYYGCLRDDETLSIFMEYMPGGSVKDQLKAYG-------ALTETVTRKYTRQILEGVEYL 120

Query: 449 HGYNKAHLFHGHLSSSNIVVDQLGNACISDIG---------VHQLFHTPFFINDAYNAPE 499
           H      + H  +  +NI+ D  GN  + D G                       + +PE
Sbjct: 121 H---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPE 177

Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           +        S   + ++ DV+S G  ++E+LT K
Sbjct: 178 V-------ISGEGYGRKADVWSVGCTVVEMLTEK 204

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 41/219 (18%)

Query: 340 LLGKGCVGATYKVVLDG--GDVVVVKRI--------RERKKKREVDEWLRVIGGLR---H 386
           L+G G  G+ Y + ++   G+++ VK++         + +K+  +D   R I  L+   H
Sbjct: 7   LIGSGSFGSVY-LGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQH 65

Query: 387 SNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLA 446
            NIV         D L +  +Y+P GS+ +LL+ + G     +  N          KGL 
Sbjct: 66  ENIVQYLGSSLDADHLNIFLEYVPGGSVAALLN-NYGAFEETLVRN----FVRQILKGLN 120

Query: 447 FLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF-----------HTPFFINDAY 495
           +LH  N+  + H  +  +NI+VD  G   ISD G+ +               P      +
Sbjct: 121 YLH--NRG-IIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVF 177

Query: 496 -NAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
             APE+         Q  + ++ D++S G +++E+LTGK
Sbjct: 178 WMAPEV-------VKQTSYTRKADIWSLGCLVVEMLTGK 209

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 49/220 (22%), Positives = 94/220 (42%), Gaps = 36/220 (16%)

Query: 334 LKSSAELLGKGCVGATYKVVLD-GGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSI 392
           L +  E +GKG  G  +K + +    VV +K I   + + E+++  + I  L   +   +
Sbjct: 5   LFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYV 64

Query: 393 RAYCNG---KDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH 449
             Y        +L+++ +YL  GS   LL         P D  +   +  +  KGL +LH
Sbjct: 65  TKYYGSYLKGTKLWIIMEYLGGGSALDLLRAG------PFDEFQIATMLKEILKGLDYLH 118

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-----------HQLFHTPFFINDAYNAP 498
              K    H  + ++N+++ + G+  ++D GV           +    TPF++     AP
Sbjct: 119 SEKK---IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWM-----AP 170

Query: 499 ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD 538
           E+         Q  +  + D++S G+  +E+  G+    D
Sbjct: 171 EV-------IQQSAYDSKADIWSLGITAIELAKGEPPNSD 203

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 37/148 (25%), Positives = 55/148 (37%), Gaps = 21/148 (14%)

Query: 336 SSAELLGKGCVGATYKVVLDGGDVVVVKRIRERKKK----REVDEWLRVIGGLRHSNIV- 390
           SS +LL  G     Y +     D V+ K    R+K     REV   L+++   R    V 
Sbjct: 1   SSIKLLKGGLTNRVYLLGTKDEDYVL-KINPSREKGADREREV-AILQLLA--RKGLPVP 56

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
            + A        +L+ +++             G     V   ++  +A   A+ LA LH 
Sbjct: 57  KVLASGESDGWSYLLMEWIE------------GETLDEVSEEEKEDIAEQLAELLAKLHQ 104

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISD 478
                L HG L   NI+VD      I D
Sbjct: 105 LPLLVLCHGDLHPGNILVDDGKILGIID 132

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. Length = 155

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 92  QLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN 148
            L+ L L NN L+   +      P+LK L LS N  T   P   S L  LR +DLS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 55/282 (19%), Positives = 119/282 (42%), Gaps = 51/282 (18%)

Query: 341 LGKGCVGATYKV--VLDGGDVVVVKRIR-----ERKKKREVDEWLRVIGGLRHSNIVSIR 393
           +G+G     Y+   +LDG   V +K+++     + K + +  + + ++  L H N++   
Sbjct: 10  IGRGQFSEVYRATCLLDG-VPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYY 68

Query: 394 AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVD---WNKRLKLASDSAKGLAFLHG 450
           A     +EL +V +    G L  ++   +   R+  +   W   ++L S      A  H 
Sbjct: 69  ASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCS------ALEHM 122

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGV-----------HQLFHTPFFINDAYNAPE 499
           +++  + H  +  +N+ +   G   + D+G+           H L  TP+     Y +PE
Sbjct: 123 HSR-RVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPY-----YMSPE 176

Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEV 559
               N  N+       + D++S G +L E+   +      ++ +    + + Q       
Sbjct: 177 RIHENGYNF-------KSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQ------- 222

Query: 560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM 601
            D+  +      EE+R L+    +C+ P P+ RP+++ V+ +
Sbjct: 223 CDYPPLPSDHYSEELRQLVN---MCINPDPEKRPDITYVYDV 261

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 33/207 (15%)

Query: 341 LGKGCVGATYKVV-LDGGDVVVVKRIRERK-----KK---REVDEWLRVIGGLRHSNIVS 391
           +G+G  G  +K    + G +V +K+  E +     KK   RE+    R++  L+H N+V+
Sbjct: 9   IGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREI----RMLKQLKHPNLVN 64

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY 451
           +      K +L LV++Y  H  L+ L    RG     V  +   K+   + + + F H +
Sbjct: 65  LIEVFRRKRKLHLVFEYCDHTVLNELEKNPRG-----VPEHLIKKIIWQTLQAVNFCHKH 119

Query: 452 NKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF------HTPFFINDAYNAPELKFNNN 505
           N     H  +   NI++ + G   + D G  ++       +T +     Y APEL   + 
Sbjct: 120 N---CIHRDVKPENILITKQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGDT 176

Query: 506 NNYSQRKFWQRCDVYSFGVVLLEILTG 532
                 ++    DV++ G V  E+LTG
Sbjct: 177 ------QYGPPVDVWAIGCVFAELLTG 197

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 55/227 (24%), Positives = 97/227 (42%), Gaps = 50/227 (22%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERK-KKREVDEWLRVIGGLR----HSNIVSI 392
           E++G+G  G  YK      G +V +K +   + ++ E+ E   +   LR    H NI + 
Sbjct: 12  EVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNI---LRKYSNHPNIATF 68

Query: 393 ------RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPG-RMPVDWNKRLKLA---SDSA 442
                 +      D+L+LV +    GS+  L+ G R  G R+  +W     +A    ++ 
Sbjct: 69  YGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEW-----IAYILRETL 123

Query: 443 KGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVH-QLFH----------TPFFI 491
           +GLA+LH   +  + H  +   NI++ +     + D GV  QL            TP+++
Sbjct: 124 RGLAYLH---ENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWM 180

Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD 538
                APE+   +        +  R DV+S G+  +E     +A G 
Sbjct: 181 -----APEVIACDEQ--PDASYDARSDVWSLGITAIE-----LADGK 215

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 51/222 (22%), Positives = 106/222 (47%), Gaps = 39/222 (17%)

Query: 329 NVGDLLK--SSAELLGKGCVGATYKVV-LDGGDVVVVKR--IRERKKKREVDEWLRVIGG 383
           +VGD  K  +  E +G+G  G  Y  + +  G  V +K+  ++++ KK  +   + V+  
Sbjct: 13  SVGDPKKKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRE 72

Query: 384 LRHSNIVS-IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSA 442
            ++ NIV+ + +Y  G DEL++V +YL  GSL  ++          +D  +   +  +  
Sbjct: 73  NKNPNIVNYLDSYLVG-DELWVVMEYLAGGSLTDVV------TETCMDEGQIAAVCRECL 125

Query: 443 KGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-----------HQLFHTPFFI 491
           + L FLH      + H  + S NI++   G+  ++D G              +  TP+++
Sbjct: 126 QALDFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWM 182

Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
                APE+        +++ +  + D++S G++ +E++ G+
Sbjct: 183 -----APEV-------VTRKAYGPKVDIWSLGIMAIEMVEGE 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 50/208 (24%), Positives = 89/208 (42%), Gaps = 25/208 (12%)

Query: 338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRA 394
           AE LG+G      + VL     V VK +R    K   +++L+   ++  L++ NI+ +  
Sbjct: 30  AEFLGEGAPEFDGQPVL-----VAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLG 84

Query: 395 YCNGKDELFLVYDYLPHGSLHSLL----------HGSRGPGRMPVDWNKRLKLASDSAKG 444
            C   D L ++ +Y+ +G L+  L          H +  P    V     L +A   A G
Sbjct: 85  VCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPS---VSIANLLYMAVQIASG 141

Query: 445 LAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ-LFHTPFFINDAYNAPELKFN 503
           + +L   N     H  L++ N +V       I+D G+ + L+   ++         +++ 
Sbjct: 142 MKYLASLN---FVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWM 198

Query: 504 NNNNYSQRKFWQRCDVYSFGVVLLEILT 531
              +    KF    DV++FGV L E+ T
Sbjct: 199 AWESILLGKFTTASDVWAFGVTLWEMFT 226

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 37/211 (17%)

Query: 340 LLGKGCVGATYKVVLDGGD-VVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRAY 395
           ++G+G  G    V     D    +K IR  K    V++  +   ++  ++H NIV+ +  
Sbjct: 7   VVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKES 66

Query: 396 CNGKDELFLVYDYLPHGSLHSLLHGSRG---PGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
                 L++V +Y   G L   +   RG   P    + W  ++ L      G+  +H   
Sbjct: 67  FEADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCL------GVQHIH--- 117

Query: 453 KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF-----FINDAYNAP-----ELKF 502
           +  + H  + S NI + Q G   + D G  +L  +P      ++   Y  P      + +
Sbjct: 118 EKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWENMPY 177

Query: 503 NNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           NN           + D++S G +L E+ T K
Sbjct: 178 NN-----------KSDIWSLGCILYELCTLK 197

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 45.8 bits (108), Expect = 4e-05
 Identities = 48/215 (22%), Positives = 94/215 (43%), Gaps = 27/215 (12%)

Query: 339 ELLGKGCVGATYK--VVLDGGDV---VVVKRIRER---KKKREVDEWLRVIGGLRHSNIV 390
           ++LG G  G  YK   + +G  V   V +K +RE    K  +E+ +   V+  + + ++ 
Sbjct: 13  KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVC 72

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLL--HGSRGPGRMPVDWNKRLKLASDSAKGLAFL 448
            +   C     + L+   +P G L   +  H      +  ++W  ++      AKG+ +L
Sbjct: 73  RLLGICL-TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI------AKGMNYL 125

Query: 449 HGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAP----ELKFNN 504
               +  L H  L++ N++V    +  I+D G+ +L          Y+A      +K+  
Sbjct: 126 E---ERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAD---EKEYHAEGGKVPIKWMA 179

Query: 505 NNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG 539
             +   R +  + DV+S+GV + E++T      DG
Sbjct: 180 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 214

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 45.4 bits (107), Expect = 4e-05
 Identities = 60/284 (21%), Positives = 122/284 (42%), Gaps = 50/284 (17%)

Query: 341 LGKGCVGATYKVV-LDGGDVVVVKRI-----RERKKKREVDEWLRVIGGLRHSNIVSIRA 394
           +G G  GA Y    +   +VV +K++     +  +K +++ + +R +  LRH N +  R 
Sbjct: 23  IGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRG 82

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLAS---DSAKGLAFLHGY 451
               +   +LV +Y   GS   LL   + P        + +++A+    + +GLA+LH +
Sbjct: 83  CYLREHTAWLVMEYC-LGSASDLLEVHKKP-------LQEVEIAAVTHGALQGLAYLHSH 134

Query: 452 NKAHLFHGHLSSSNIVVDQLGNACISDIG-------VHQLFHTPFFINDAYNAPELKFNN 504
           N   + H  + + NI++ + G   + D G        +    TP+++     APE+    
Sbjct: 135 N---MIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANXFVGTPYWM-----APEVILAM 186

Query: 505 NNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL 564
           +    + ++  + DV+S G+  +E+   +       +  +  +  + Q+ES         
Sbjct: 187 D----EGQYDGKVDVWSLGITCIEL--AERKPPLFNMNAMSALYHIAQNESP-------A 233

Query: 565 IMDKEMEEEMRALLQVALLCLAPLPKDRP--NMSIVHRMIEDIR 606
           +      E  R  +     CL  +P+DRP   + + HR +   R
Sbjct: 234 LQSGHWSEYFRNFVDS---CLQKIPQDRPTSEVLLKHRFVLRER 274

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.7 bits (108), Expect = 5e-05
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 5/114 (4%)

Query: 87  LSRLTQLRLLSLKNNLLSSSNLNLS-SWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDL 145
           L  LT L  L L NN ++     +     +LK L LS N+   + PS + +L +L+ +DL
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL 170

Query: 146 SHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQL 199
           S N    ++P   L+ L NL  L L  N+ +  L        ++ + ++SNN +
Sbjct: 171 SFNDLS-DLP-KLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI 221

Length = 394

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 42/180 (23%)

Query: 371 KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELF----LVYDYLPHGSLHSLLHGSRGPGR 426
           KR + E L+++   +H NI++IR         F    +V D L    LH ++H S  P  
Sbjct: 49  KRTLRE-LKILRHFKHDNIIAIRDILRPPGADFKDVYVVMD-LMESDLHHIIH-SDQP-- 103

Query: 427 MPVDWNKRLKLASDSA------KGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIG 480
                   L             +GL ++H    A++ H  L  SN++V++     I D G
Sbjct: 104 --------LTEEHIRYFLYQLLRGLKYIHS---ANVIHRDLKPSNLLVNEDCELRIGDFG 152

Query: 481 ----------VHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEIL 530
                      H+ F T +     Y APEL        S  ++    D++S G +  E+L
Sbjct: 153 MARGLSSSPTEHKYFMTEYVATRWYRAPELLL------SLPEYTTAIDMWSVGCIFAEML 206

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 45.0 bits (106), Expect = 6e-05
 Identities = 46/204 (22%), Positives = 90/204 (44%), Gaps = 33/204 (16%)

Query: 341 LGKGCVGATYKVV-LDGGDVVVVKRIRERKKK--REVDEWLRVIGGLRHSNIVSIRAYCN 397
           +G G  G  YK   L  G++  VK I+         + + + ++   +H NIV+      
Sbjct: 17  VGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYL 76

Query: 398 GKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLF 457
            +++L++  +Y   GSL  + H +     + + +  R     ++ +GLA+LH   K    
Sbjct: 77  SREKLWICMEYCGGGSLQDIYHVTGPLSELQIAYVCR-----ETLQGLAYLHSKGK---M 128

Query: 458 HGHLSSSNIVVDQLGNACISDIGV-----------HQLFHTPFFINDAYNAPEL-KFNNN 505
           H  +  +NI++   G+  ++D GV                TP+++     APE+     N
Sbjct: 129 HRDIKGANILLTDNGDVKLADFGVAAKITATIAKRKSFIGTPYWM-----APEVAAVEKN 183

Query: 506 NNYSQRKFWQRCDVYSFGVVLLEI 529
             Y+     Q CD+++ G+  +E+
Sbjct: 184 GGYN-----QLCDIWAVGITAIEL 202

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 52/235 (22%), Positives = 89/235 (37%), Gaps = 68/235 (28%)

Query: 341 LGKGCVGATYKVV-LDGGDVVVVKRIRERKKK--------REVDEWLRVIGGLRHSNIVS 391
           LG+G  G  YK   +  G VV +K+I    +K        RE+    +++  L+H N+V 
Sbjct: 16  LGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREI----KILKKLKHPNVVP 71

Query: 392 I--RAYCNGKDEL------FLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAK 443
           +   A              ++V  Y+ H  L  LL             N  +KL     K
Sbjct: 72  LIDMAVERPDKSKRKRGSVYMVTPYMDH-DLSGLLE------------NPSVKLTESQIK 118

Query: 444 --------GLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH--------- 486
                   G+ +LH   + H+ H  + ++NI++D  G   I+D G+ + +          
Sbjct: 119 CYMLQLLEGINYLH---ENHILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGG 175

Query: 487 --------TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
                   T   +   Y  PEL         +R++    D++  G V  E+ T +
Sbjct: 176 GGGGTRKYTNLVVTRWYRPPELLLG------ERRYTTAVDIWGIGCVFAEMFTRR 224

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 51/220 (23%), Positives = 96/220 (43%), Gaps = 45/220 (20%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIR--------ERKKKREVDEWLRVIGGLRHSNIV 390
           E+LGKG  G  Y  + + G ++ VK++           K+  ++ E + ++  L+H NIV
Sbjct: 6   EVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIV 65

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
                C   + + +  +++P GS+ S+L+   GP   PV      K       G+A+LH 
Sbjct: 66  QYLGTCLDDNTISIFMEFVPGGSISSILN-RFGPLPEPV----FCKYTKQILDGVAYLHN 120

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIG-----------------VHQLFHTPFFIND 493
                + H  +  +N+++   G   + D G                 +  +  TP+++  
Sbjct: 121 NC---VVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWM-- 175

Query: 494 AYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
              APE+   N + Y ++      D++S G  + E+ TGK
Sbjct: 176 ---APEVI--NESGYGRKS-----DIWSIGCTVFEMATGK 205

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 21/129 (16%)

Query: 409 LPHGS--LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNI 466
           LPH S  L++ L  ++    +P+D  + L +     +GL +LH      + H  + + NI
Sbjct: 136 LPHYSSDLYTYL--TKRSRPLPID--QALIIEKQILEGLRYLHAQR---IIHRDVKTENI 188

Query: 467 VVDQLGNACISDIGVHQL-FHTPFFINDA----YNAPELKFNNNNNYSQRKFWQRCDVYS 521
            ++ +   CI D+G  Q     P F+  A     NAPE+        ++ K+  + D++S
Sbjct: 189 FINDVDQVCIGDLGAAQFPVVAPAFLGLAGTVETNAPEV-------LARDKYNSKADIWS 241

Query: 522 FGVVLLEIL 530
            G+VL E+L
Sbjct: 242 AGIVLFEML 250

Length = 357

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 32/205 (15%)

Query: 341 LGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGL---RHSNIVS-IRAYC 396
           LG G  G  YK       +    +I + + + E+++++  I  L   +H NIV    AY 
Sbjct: 13  LGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYF 72

Query: 397 NGKDELFLVYDYLPHGSLHSLL----HGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
             +++L+++ ++   G+L S++     G   P    V             + L FLH + 
Sbjct: 73  Y-ENKLWILIEFCDGGALDSIMLELERGLTEPQIRYV--------CRQMLEALNFLHSHK 123

Query: 453 KAHLFHGHLSSSNIVVDQLGNACISDIGVH-------QLFHTPFFINDAY-NAPELKFNN 504
              + H  L + NI++   G+  ++D GV        Q   T  FI   Y  APE+    
Sbjct: 124 ---VIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDT--FIGTPYWMAPEVV--A 176

Query: 505 NNNYSQRKFWQRCDVYSFGVVLLEI 529
              +    +  + D++S G+ L+E+
Sbjct: 177 CETFKDNPYDYKADIWSLGITLIEL 201

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 21/154 (13%)

Query: 386 HSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGL 445
           H NIV++   C     + ++ +Y  +G L + L   R      +     L  +   AKG+
Sbjct: 98  HENIVNLLGACTIGGPILVITEYCCYGDLLNFLRRKR---ESFLTLEDLLSFSYQVAKGM 154

Query: 446 AFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-HQLFHTPFFINDA-------YNA 497
           AFL   N     H  L++ N+++       I D G+   + +   ++          + A
Sbjct: 155 AFLASKN---CIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMA 211

Query: 498 PELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           PE  FN         +    DV+S+G++L EI +
Sbjct: 212 PESIFNC-------VYTFESDVWSYGILLWEIFS 238

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 44.3 bits (104), Expect = 9e-05
 Identities = 44/203 (21%), Positives = 91/203 (44%), Gaps = 31/203 (15%)

Query: 341 LGKGCVGATYKVV-LDGGDVVVVKRIRERKKK--REVDEWLRVIGGLRHSNIVSIRAYCN 397
           +G G  G  YK   ++ G++  +K I+    +    V + + ++   +HSNIV+      
Sbjct: 17  IGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYL 76

Query: 398 GKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLF 457
            +D+L++  ++   GSL  + H +      P+  ++   ++ ++ +GL +LH   K    
Sbjct: 77  RRDKLWICMEFCGGGSLQDIYHVTG-----PLSESQIAYVSRETLQGLYYLHSKGK---M 128

Query: 458 HGHLSSSNIVVDQLGNACISDIGV-----------HQLFHTPFFINDAYNAPELKFNNNN 506
           H  +  +NI++   G+  ++D GV                TP+++     A E K   N 
Sbjct: 129 HRDIKGANILLTDNGHVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYN- 187

Query: 507 NYSQRKFWQRCDVYSFGVVLLEI 529
                   Q CD+++ G+  +E+
Sbjct: 188 --------QLCDIWAVGITAIEL 202

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 66/281 (23%), Positives = 118/281 (41%), Gaps = 36/281 (12%)

Query: 339 ELLGKGCVGATYKVVL---DGGDV-VVVKRIRERKKKREVDEWLR---VIGGLRHSNIVS 391
            ++GKG  G  Y   L   DG  +   VK +       EV+++L+   ++    H N++S
Sbjct: 1   RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLS 60

Query: 392 IRAYCNGKDELFLV-YDYLPHGSLHSLLHGSRGPGRMPVDWNKRL-KLASDSAKGLAFLH 449
           +   C   +   LV   Y+ HG L    +  R     P    K L       AKG+ +L 
Sbjct: 61  LLGICLPSEGSPLVVLPYMKHGDL---RNFIRSETHNPT--VKDLIGFGLQVAKGMEYL- 114

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-HQLFHTPFFINDAYNAPEL--KFNNNN 506
                   H  L++ N ++D+     ++D G+   ++   ++    +   +L  K+    
Sbjct: 115 --ASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALE 172

Query: 507 NYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM 566
           +   +KF  + DV+SFGV+L E++T          G   +      D  ++++  + L  
Sbjct: 173 SLQTQKFTTKSDVWSFGVLLWELMT---------RGAPPY-----PDVDSFDITVYLLQG 218

Query: 567 DKEMEEEM--RALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
            + ++ E     L +V L C  P P+ RP  S +   IE I
Sbjct: 219 RRLLQPEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQI 259

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 49/208 (23%), Positives = 98/208 (47%), Gaps = 26/208 (12%)

Query: 339 ELLGKGCVGATYKVVLD-GGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRA 394
           E LG+G     YK      G +V +K IR ++++      +R   ++ GL+H+NIV +  
Sbjct: 11  EKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHD 70

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA 454
             + K+ L LV++Y+ H  L   +   + PG +  + N +L L     +GL+++H   + 
Sbjct: 71  IIHTKETLTLVFEYV-HTDLCQYM--DKHPGGLHPE-NVKLFLFQ-LLRGLSYIH---QR 122

Query: 455 HLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP--FFINDA----YNAPELKFNNNNNY 508
           ++ H  L   N+++   G   ++D G+ +    P   + N+     Y  P++   +    
Sbjct: 123 YILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTE-- 180

Query: 509 SQRKFWQRC-DVYSFGVVLLEILTGKMA 535
                +  C D++  G + +E++ G  A
Sbjct: 181 -----YSTCLDMWGVGCIFVEMIQGVAA 203

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 56/234 (23%), Positives = 103/234 (44%), Gaps = 28/234 (11%)

Query: 383 GLRHSNIVSIRAYC-NGKDELFLVYDYLPHGSLHSLLHGSR-GPGRMPVDWNKR--LKLA 438
           GL H NI+ I   C    +  F++Y Y+  G+L   L   R G    P   + +  + +A
Sbjct: 64  GLSHQNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMA 123

Query: 439 SDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ-LFHTPFF-INDAYN 496
              A G+++LH      + H  +++ N V+D+     I+D  + + LF   +  + D  N
Sbjct: 124 IQIACGMSYLHKRG---VIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNEN 180

Query: 497 APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESA 556
            P +K+    +   +++    DV+SFGV+L E++T         LG     Q    +   
Sbjct: 181 RP-VKWMALESLVNKEYSSASDVWSFGVLLWELMT---------LG-----QTPYVEIDP 225

Query: 557 WEVFDFELIMDKEMEEEMRA---LLQVALLCLAPLPKDRPNMSIVHRMIEDIRT 607
           +E+  + L     + + +     L  V   C A  P++RP+ S + + + D   
Sbjct: 226 FEMAAY-LKDGYRLAQPINCPDELFAVMACCWALDPEERPSFSQLVQCLTDFHA 278

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 61/281 (21%), Positives = 105/281 (37%), Gaps = 42/281 (14%)

Query: 341 LGKGCVGATYKVVLDGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIR-A 394
           LG+G  G+  K  L    ++   +          +K+ + E L +    +   IV    A
Sbjct: 9   LGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRE-LEINKSCKSPYIVKYYGA 67

Query: 395 YCNGKD-ELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNK 453
           + +     + +  +Y   GSL S+    +  G   +      K+A    KGL++LH    
Sbjct: 68  FLDESSSSIGIAMEYCEGGSLDSIYKKVKKRG-GRIGEKVLGKIAESVLKGLSYLHSRK- 125

Query: 454 AHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF---FINDA-YNAPELKFNNNNNYS 509
             + H  +  SNI++ + G   + D GV           F   + Y APE        YS
Sbjct: 126 --IIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLAGTFTGTSFYMAPERI--QGKPYS 181

Query: 510 QRKFWQRCDVYSFGVVLLEILTGKM---AKGDGELGIVKWVQMMGQDESAWEVFDFELIM 566
                   DV+S G+ LLE+   +     +G+  LG ++ +  +    +       EL  
Sbjct: 182 IT-----SDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPN------PELKD 230

Query: 567 DKEME----EEMRALLQVALLCLAPLPKDRPNMSIVHRMIE 603
           +        EE +  ++    CL   P  RP       M+E
Sbjct: 231 EPGNGIKWSEEFKDFIKQ---CLEKDPTRRPT---PWDMLE 265

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 46/221 (20%)

Query: 338 AELLGKGCVGATYKVV-LDGGDVVVVKRIR----ERKKKREVDEW---LRVIGGLRHSNI 389
            +LLG+G  G  Y    +D G  +  K+++      +  +EV      ++++  L+H  I
Sbjct: 7   GKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERI 66

Query: 390 VSIRAYC---NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLA 446
           V     C     +  L +  +Y+P GS+   L   +  G +     +  K      +G++
Sbjct: 67  VQYYG-CLRDRAEKTLTIFMEYMPGGSVKDQL---KAYGALTESVTR--KYTRQILEGMS 120

Query: 447 FLHGYNKAHLFHGHLSSSNIVVDQLGNA--------------CISDIGVHQLFHTPFFIN 492
           +LH      + H  +  +NI+ D  GN               C+S  G+  +  TP+++ 
Sbjct: 121 YLHS---NMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWM- 176

Query: 493 DAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
               +PE+        S   + ++ DV+S G  ++E+LT K
Sbjct: 177 ----SPEV-------ISGEGYGRKADVWSLGCTVVEMLTEK 206

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 47/219 (21%), Positives = 89/219 (40%), Gaps = 48/219 (21%)

Query: 339 ELLGKGCVGATYK-VVLDGGDVVVVKRIRERKKK-----------REVDEWLRVIGGLRH 386
           + LG+G     YK    + G +V +K+I+  ++K           RE+    +++  L+H
Sbjct: 6   KKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREI----KLLQELKH 61

Query: 387 SNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSA---- 442
            NI+ +      K  + LV++++    L  ++           D +  L  A   +    
Sbjct: 62  PNIIGLLDVFGHKSNINLVFEFM-ETDLEKVIK----------DKSIVLTPADIKSYMLM 110

Query: 443 --KGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF------HTPFFINDA 494
             +GL +LH      + H  L  +N+++   G   ++D G+ + F       T   +   
Sbjct: 111 TLRGLEYLHSNW---ILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTRW 167

Query: 495 YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           Y APEL F        R +    D++S G +  E+L   
Sbjct: 168 YRAPELLF------GARHYGVGVDMWSVGCIFAELLLRV 200

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 115 HLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNR 174
           +LK L LS+NR T         L +L+ +DLS N     I     + LP+L +L L  N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 175 F 175
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 48/208 (23%), Positives = 96/208 (46%), Gaps = 37/208 (17%)

Query: 341 LGKGCVG-ATYKVVLDGGDVVVVKRIRERKKKRE--VDEWLRVIGGLRHSNIVSI-RAYC 396
           +G+G  G      V   G +V VK++  RK++R   +   + ++   +H N+V +  +Y 
Sbjct: 28  IGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYL 87

Query: 397 NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHL 456
            G DEL++V ++L  G+L  ++  +R      ++  +   +     K L+ LH      +
Sbjct: 88  VG-DELWVVMEFLEGGALTDIVTHTR------MNEEQIAAVCLAVLKALSVLHAQG---V 137

Query: 457 FHGHLSSSNIVVDQLGNACISDIGV-----------HQLFHTPFFINDAYNAPELKFNNN 505
            H  + S +I++   G   +SD G              L  TP+++     APEL     
Sbjct: 138 IHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWM-----APEL----- 187

Query: 506 NNYSQRKFWQRCDVYSFGVVLLEILTGK 533
              S+  +    D++S G++++E++ G+
Sbjct: 188 --ISRLPYGPEVDIWSLGIMVIEMVDGE 213

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 10/103 (9%)

Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVH-QLFHTPFFINDA 494
           K+A    K L +LH  +K  + H  +  SN+++++ G   + D G+   L  +     DA
Sbjct: 107 KIAVSIVKALEYLH--SKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVAKTIDA 164

Query: 495 ----YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
               Y APE + N   N  Q+ +  + DV+S G+ ++E+ TG+
Sbjct: 165 GCKPYMAPE-RINPELN--QKGYDVKSDVWSLGITMIELATGR 204

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 44/213 (20%)

Query: 339 ELLGKGCVGATYKVVL----DGGDVVVVKRIRERK--KKREVDEWL---RVIGGLRHSNI 389
           + LG G  G   +V+L      G    +K + + K  K ++V+  L   R++  +RH  +
Sbjct: 7   KTLGTGSFG---RVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFL 63

Query: 390 VSIRAYCNGKDE--LFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAF 447
           V    Y + +D+  L+LV +Y+P G L S L   R  GR P    +    A+     L +
Sbjct: 64  V--NLYGSFQDDSNLYLVMEYVPGGELFSHL---RKSGRFPEPVARF--YAAQVVLALEY 116

Query: 448 LHGYNKAHLFHGHLSSSNIVVDQLGNACISDIG--------VHQLFHTPFFINDAYNAPE 499
           LH      + +  L   N+++D  G   I+D G         + L  TP      Y APE
Sbjct: 117 LHS---LDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRTYTLCGTP-----EYLAPE 168

Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
           +  +     +        D ++ G+++ E+L G
Sbjct: 169 IILSKGYGKA-------VDWWALGILIYEMLAG 194

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 55/264 (20%), Positives = 112/264 (42%), Gaps = 29/264 (10%)

Query: 359 VVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH 415
           +V VK +R    K   +++L+   ++  L+  NI+ +   C  +D L ++ +Y+ +G L+
Sbjct: 48  LVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLN 107

Query: 416 SLLH--------GSRGPGRMP------VDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHL 461
             L          +      P      + ++  L +A   A G+ +L   N     H  L
Sbjct: 108 QFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLN---FVHRDL 164

Query: 462 SSSNIVVDQLGNACISDIGVHQ-LFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVY 520
           ++ N +V +     I+D G+ + L+   ++         +++         KF    DV+
Sbjct: 165 ATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVW 224

Query: 521 SFGVVLLEILTGKMAKGDGELGIVKWVQMMGQ--DESAWEVFDFELIMDKEMEEEMRALL 578
           +FGV L EIL     +  GEL   + ++  G+   +   +V+ F      +       L 
Sbjct: 225 AFGVTLWEILMLCKEQPYGELTDEQVIENAGEFFRDQGRQVYLFRPPPCPQ------GLY 278

Query: 579 QVALLCLAPLPKDRPNMSIVHRMI 602
           ++ L C +   ++RP+ S +H  +
Sbjct: 279 ELMLQCWSRDCRERPSFSDIHAFL 302

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 23/151 (15%)

Query: 392 IRAYCNGKDE--LFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH 449
           ++ +C  +D+  L++V +Y+P G L +L+     P +    +   + LA D+   +    
Sbjct: 106 VQLFCAFQDDKYLYMVMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHSMG--- 162

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-HQLFHTPFFINDA------YNAPE-LK 501
                 L H  +   N+++D+ G+  ++D G   ++  T     D       Y +PE LK
Sbjct: 163 ------LIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLK 216

Query: 502 FNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
               + Y  R+    CD +S GV L E+L G
Sbjct: 217 SQGGDGYYGRE----CDWWSVGVFLFEMLVG 243

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain, heart, and skeletal muscles. It is implicated in vascular and neurological disorders, such as hypertension and vasospasm of the coronary and cerebral arteries. ROCK2 is also activated by caspase-2 cleavage, resulting in thrombin-induced microparticle generation in response to cell activation. Mice deficient in ROCK2 show intrauterine growth retardation and embryonic lethality because of placental dysfunction. Length = 370

>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

 Score = 42.3 bits (99), Expect = 5e-04
 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 21/139 (15%)

Query: 402 LFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHL 461
           L++V +Y+P G L +L+     P +    +   + LA D+   + F+         H  +
Sbjct: 118 LYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFI---------HRDV 168

Query: 462 SSSNIVVDQLGNACISDIGVHQLFHTPFFI-------NDAYNAPE-LKFNNNNNYSQRKF 513
              N+++D+ G+  ++D G     +    +          Y +PE LK    + Y  R+ 
Sbjct: 169 KPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRE- 227

Query: 514 WQRCDVYSFGVVLLEILTG 532
              CD +S GV L E+L G
Sbjct: 228 ---CDWWSVGVFLYEMLVG 243

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the development of cardiac fibrosis, cardiomyocyte apoptosis, and hyperglycemia. Mice deficient with ROCK1 display eyelids open at birth (EOB) and omphalocele phenotypes due to the disorganization of actin filaments in the eyelids and the umbilical ring. Length = 371

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 6e-04
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 85  EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVD 144
             LS L  L  L L NN L     ++ +  +L+ L LS+N+   +  S + SL +LR +D
Sbjct: 226 SSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ--ISSISSLGSLTNLRELD 283

Query: 145 LSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQL 199
           LS N+    +P+  L  L   L   L +   T     +  +S  +L+ N+ +N  
Sbjct: 284 LSGNSLSNALPLIALLLLLLEL---LLNLLLTLKALELKLNS-ILLNNNILSNGE 334

Length = 394

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 50/211 (23%), Positives = 81/211 (38%), Gaps = 38/211 (18%)

Query: 341 LGKGCVGATYKV-VLDGGDVVVVKRIRERKKKREVDEWL----RVIGGLRHSN-IVSIRA 394
           LGKG  G      V   G +   K++ +++ K+   E +    + I     S  IVS+  
Sbjct: 1   LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAY 60

Query: 395 YCNGKDELFLVYDYLPHGSLHSLL--HGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
               KD+L LV   +  G L   +   G  G         + +  A+    GL  LH   
Sbjct: 61  AFETKDDLCLVMTLMNGGDLKYHIYNVGEPG-----FPEARAIFYAAQIICGLEHLHQRR 115

Query: 453 KAHLFHGHLSSSNIVVDQLGNACISDIG----------VHQLFHTPFFINDAYNAPELKF 502
              + +  L   N+++D  GN  ISD+G          +     TP      Y APE+  
Sbjct: 116 ---IVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGRAGTP-----GYMAPEVLQ 167

Query: 503 NNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
               ++S        D ++ G  L E++ G+
Sbjct: 168 GEVYDFS-------VDWFALGCTLYEMIAGR 191

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 31/207 (14%)

Query: 341 LGKGCVGATYK-VVLDGGDVVVVKRIRERKKK-------REVDEWLRVIGGLRHSNIVSI 392
           LG G  G+ Y     + G++V +K+++++          REV + LR +    H NIV +
Sbjct: 7   LGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREV-KSLRKLN--EHPNIVKL 63

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLK-LASDSAKGLAFLHGY 451
           +      DEL+ V++Y+  G+L+ L+   R            ++ +     +GLA +H  
Sbjct: 64  KEVFRENDELYFVFEYM-EGNLYQLMK-DRKGKPFS---ESVIRSIIYQILQGLAHIH-- 116

Query: 452 NKAHLFHGHLSSSNIVVDQLGNACISDIG-----VHQLFHTPFFINDAYNAPELKFNNNN 506
            K   FH  L   N++V       I+D G       +  +T +     Y APE+    + 
Sbjct: 117 -KHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPPYTDYVSTRWYRAPEI-LLRST 174

Query: 507 NYSQRKFWQRCDVYSFGVVLLEILTGK 533
           +YS        D+++ G ++ E+ T +
Sbjct: 175 SYS-----SPVDIWALGCIMAELYTLR 196

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 21/181 (11%)

Query: 360 VVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS 416
           V +K ++   +K   DE +R   ++  L +  IV +   C   + L LV +    G L+ 
Sbjct: 25  VAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEA-EALMLVMEMASGGPLNK 83

Query: 417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACI 476
            L G +    + V  +  ++L    + G+ +L G N     H  L++ N+++     A I
Sbjct: 84  FLSGKKD--EITV--SNVVELMHQVSMGMKYLEGKN---FVHRDLAARNVLLVNQHYAKI 136

Query: 477 SDIGVHQLFHTPFFINDAYNAPE------LKFNNNNNYSQRKFWQRCDVYSFGVVLLEIL 530
           SD G+ +        +D+Y          LK+      + RKF  R DV+S+G+ + E  
Sbjct: 137 SDFGLSKALGA----DDSYYKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAF 192

Query: 531 T 531
           +
Sbjct: 193 S 193

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 57/217 (26%), Positives = 84/217 (38%), Gaps = 46/217 (21%)

Query: 339 ELLGKGCVGATYKVVLD--GGDV--VVVKRIRERKKKREVDEWLR---VIGGLRHSNIVS 391
           + LG G  G   +      GG V  V VK ++  K    +D++L+   ++  L H N+  
Sbjct: 1   KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENL-- 58

Query: 392 IRAYCNG---KDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFL 448
           IR Y  G      L +V +  P GSL   L      G   +  +     A   A G+ +L
Sbjct: 59  IRLY--GVVLTHPLMMVTELAPLGSLLDRLR-KDALGHFLI--STLCDYAVQIANGMRYL 113

Query: 449 HGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL-----------FH--TPFFINDAY 495
                    H  L++ NI++       I D G+ +             H   PF    A+
Sbjct: 114 E---SKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPF----AW 166

Query: 496 NAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
            APE L+         R F    DV+ FGV L E+ T
Sbjct: 167 CAPESLRT--------RTFSHASDVWMFGVTLWEMFT 195

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 55/220 (25%), Positives = 96/220 (43%), Gaps = 26/220 (11%)

Query: 341 LGKGCVGATYKVVLDG-GDVVVVKRI---RERKKKREVDEWLRVIGGLRHSNIVSIRAYC 396
           +G G  G  YKV+    G +  +K I    E   +R++   + ++  + H N+V      
Sbjct: 82  IGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMF 141

Query: 397 NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHL 456
           +   E+ ++ +++  GSL          G    D      +A     G+A+LH   + H+
Sbjct: 142 DHNGEIQVLLEFMDGGSLE---------GTHIADEQFLADVARQILSGIAYLH---RRHI 189

Query: 457 FHGHLSSSNIVVDQLGNACISDIGVHQ-LFHTPFFIND-----AYNAPELKFNNNNNYSQ 510
            H  +  SN++++   N  I+D GV + L  T    N      AY +PE + N + N+  
Sbjct: 190 VHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSVGTIAYMSPE-RINTDLNHGA 248

Query: 511 RKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMM 550
              +   D++S GV +LE   G+   G G  G   W  +M
Sbjct: 249 YDGYAG-DIWSLGVSILEFYLGRFPFGVGRQG--DWASLM 285

Length = 353

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 64/283 (22%), Positives = 115/283 (40%), Gaps = 38/283 (13%)

Query: 341 LGKGCVGATYKVVLDGGDV------VVVKRIRERKKKREVDEWLR---VIGGLRHSNIVS 391
           LG G  G  Y+ +  G D       V VK + E   +++  ++L    ++    H NIV 
Sbjct: 14  LGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVR 73

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRG-PGR-MPVDWNKRLKLASDSAKGLAFLH 449
           +      +   F++ + +  G L S L  +R  P R   +     L  A D AKG  +L 
Sbjct: 74  LIGVSFERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLE 133

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGN---ACISDIGV-HQLFHTPFF-INDAYNAPELKFNN 504
              + H  H  +++ N ++   G    A I+D G+   ++   ++        P +K+  
Sbjct: 134 ---ENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLP-IKWMP 189

Query: 505 NNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL 564
              +    F  + DV+SFGV+L EI +         LG + +     Q     EV +F +
Sbjct: 190 PEAFLDGIFTSKTDVWSFGVLLWEIFS---------LGYMPYPGRTNQ-----EVMEF-V 234

Query: 565 IMDKEMEEEMR---ALLQVALLCLAPLPKDRPNMSIVHRMIED 604
                ++        + ++   C    P+DRPN + +   I+ 
Sbjct: 235 TGGGRLDPPKGCPGPVYRIMTDCWQHTPEDRPNFATILERIQY 277

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 32/209 (15%)

Query: 339 ELLGKGCVGATYK-VVLDGGDVVVVKRIRERKKK-------REVDEWLRVIGGLRHSNIV 390
           E LG+G     YK +    G +V +K I  + ++       RE      ++ GL+H+NIV
Sbjct: 11  EKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREAS----LLKGLKHANIV 66

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
            +    + K+ L  V++Y+ H  L   +   + PG +   +N RL       +GLA++HG
Sbjct: 67  LLHDIIHTKETLTFVFEYM-HTDLAQYM--IQHPGGLH-PYNVRL-FMFQLLRGLAYIHG 121

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA------YNAPELKFNN 504
               H+ H  L   N+++  LG   ++D G+ +    P     +      Y  P++    
Sbjct: 122 ---QHILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDVLL-G 177

Query: 505 NNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
             +YS        D++  G + +E+L G+
Sbjct: 178 ATDYS-----SALDIWGAGCIFIEMLQGQ 201

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLYLSHNRF 126
           L+ LDL+       P      L  L++L L  N L+S +    S  P L+ L LS N  
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 58/256 (22%), Positives = 98/256 (38%), Gaps = 32/256 (12%)

Query: 360 VVVKRIRERKKKREVDEWLRVIG---GLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS 416
           VVVK +R     +E  ++L        L+HSN++     C       LV ++ P G L  
Sbjct: 25  VVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGDLKG 84

Query: 417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAH---LFHGHLSSSNIVVDQLGN 473
            L   R    M  D     ++A + A GL  LH  N  H        L ++++ V     
Sbjct: 85  YLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLTVK---- 140

Query: 474 ACISDIGV-HQLFHTPFFIND-------AYNAPELKFNNNNNYSQRKFWQRCDVYSFGVV 525
             I D G+ H  +   +++          + APEL    + N       +  +V+S GV 
Sbjct: 141 --IGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVT 198

Query: 526 LLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRA--LLQVALL 583
           + E+          ELG   +  +  +    + V + +L + K   +   +    +V   
Sbjct: 199 IWELF---------ELGSQPYRHLSDEQVLTYTVREQQLKLPKPRLKLPLSDRWYEVMQF 249

Query: 584 CLAPLPKDRPNMSIVH 599
           C    P+ RP+   VH
Sbjct: 250 CWLQ-PEQRPSAEEVH 264

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 36/191 (18%)

Query: 357 GDVVVVKRIRE--------RKKKREVDEWLRVIGGLRHSNIVSIR-AYCNGKDELFLVYD 407
           G  V +K+I +        ++  RE    L+++  LRH NI+S+   + +  ++++ V +
Sbjct: 35  GQNVAIKKIMKPFSTPVLAKRTYRE----LKLLKHLRHENIISLSDIFISPLEDIYFVTE 90

Query: 408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIV 467
            L    LH LL         P++            +GL ++H    A + H  L  SNI+
Sbjct: 91  LLG-TDLHRLLTSR------PLEKQFIQYFLYQILRGLKYVH---SAGVVHRDLKPSNIL 140

Query: 468 VDQLGNACISDIGV-----HQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSF 522
           +++  +  I D G+      Q+  T +     Y APE+        + +K+    D++S 
Sbjct: 141 INENCDLKICDFGLARIQDPQM--TGYVSTRYYRAPEIML------TWQKYDVEVDIWSA 192

Query: 523 GVVLLEILTGK 533
           G +  E+L GK
Sbjct: 193 GCIFAEMLEGK 203

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 44/220 (20%)

Query: 338 AELLGKGCVGATYKVV-LDGGDVVVVKRI----RERKKKREVDEW---LRVIGGLRHSNI 389
            +LLG+G  G  Y     D G  + VK++      ++  +EV+     ++++  LRH  I
Sbjct: 7   GKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRI 66

Query: 390 VSIRAYCNGKDE--LFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAF 447
           V         +E  L +  +Y+P GS+   L   +  G +  +  +R        +G+++
Sbjct: 67  VQYYGCLRDPEEKKLSIFVEYMPGGSIKDQL---KAYGALTENVTRRY--TRQILQGVSY 121

Query: 448 LHGYNKAHLFHGHLSSSNIVVDQLGNA--------------CISDIGVHQLFHTPFFIND 493
           LH      + H  +  +NI+ D  GN               C+S  G+  +  TP+++  
Sbjct: 122 LHS---NMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWM-- 176

Query: 494 AYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
              +PE+        S   + ++ DV+S    ++E+LT K
Sbjct: 177 ---SPEV-------ISGEGYGRKADVWSVACTVVEMLTEK 206

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 40/223 (17%)

Query: 339 ELLGKGCVGATYKVVLDG-----GDVVVVKRIRERKKK--------REVDEWLRVIGGLR 385
           E +G+G    TY VV  G     G +V +K+IR   ++        RE+     ++  L+
Sbjct: 6   EKIGEG----TYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREIS----LLKELQ 57

Query: 386 HSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGL 445
           H NIV ++     +  L+L++++L    L   L        M  +  K         +G+
Sbjct: 58  HPNIVCLQDVLMQESRLYLIFEFLSM-DLKKYLDSLPKGQYMDAELVK--SYLYQILQGI 114

Query: 446 AFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FINDAYNAPE 499
            F H      + H  L   N+++D  G   ++D G+ + F  P        +   Y APE
Sbjct: 115 LFCH---SRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRVYTHEVVTLWYRAPE 171

Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL 541
           +        S R +    D++S G +  E+ T K +  GD E+
Sbjct: 172 VLLG-----SPR-YSTPVDIWSIGTIFAEMATKKPLFHGDSEI 208

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 54/281 (19%), Positives = 115/281 (40%), Gaps = 49/281 (17%)

Query: 341 LGKGCVGATYKVV--LDGGDVVVVK----RIRERKKKREVDEWLRVIGGLRHSNIVSIRA 394
           +G+G     Y+    LD   V + K     + + K +++  + + ++  L H N++    
Sbjct: 10  IGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLD 69

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVD---WNKRLKLASDSAKGLAFLHGY 451
                +EL +V +    G L  ++   +   R+  +   W   ++L S      A  H +
Sbjct: 70  SFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCS------AVEHMH 123

Query: 452 NKAHLFHGHLSSSNIVVDQLGNACISDIGV-----------HQLFHTPFFINDAYNAPEL 500
           ++  + H  +  +N+ +   G   + D+G+           H L  TP+     Y +PE 
Sbjct: 124 SR-RVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPY-----YMSPER 177

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVF 560
              N  N+       + D++S G +L E+   +      ++ +    Q + Q        
Sbjct: 178 IHENGYNF-------KSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQ-------C 223

Query: 561 DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM 601
           D+  +  +   E++R L+    +C+ P P  RP++  VH++
Sbjct: 224 DYPPLPTEHYSEKLRELVS---MCIYPDPDQRPDIGYVHQI 261

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 26/209 (12%)

Query: 341 LGKGCVGATYKVVLDGGDVVV-VKRIR---ERKKKREVDEWLRVIGGLRHSNIVSIRAYC 396
           LGKG  G+ YKV+     V + +K IR   +  K  ++   L ++       IV      
Sbjct: 9   LGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAF 68

Query: 397 NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHL 456
             +  +++  +Y+  GSL  L  G      +P D  +R+  A    KGL FL    + ++
Sbjct: 69  FIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYA--VVKGLKFLK--EEHNI 124

Query: 457 FHGHLSSSNIVVDQLGNACISDIGVH-QLFHTPFFIN---DAYNAPE----LKFNNNNNY 508
            H  +  +N++V+  G   + D GV   L  +    N    +Y APE       N N  Y
Sbjct: 125 IHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLAKTNIGCQSYMAPERIKSGGPNQNPTY 184

Query: 509 SQRKFWQRCDVYSFGVVLLEILTGKMAKG 537
           + +      DV+S G+ +LE     MA G
Sbjct: 185 TVQS-----DVWSLGLSILE-----MALG 203

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 51/210 (24%), Positives = 78/210 (37%), Gaps = 51/210 (24%)

Query: 355 DGGDVVVVKRIR------ERKKKREVDEWLRVIGGLRHSNIVSI--RAYCNGKDELFLVY 406
             G  V +K +R      E ++ R   E   +   L H NIV++           LF V+
Sbjct: 1   MTGHEVAIKLLRTDAPEEEHQRARFRRE-TALCARLYHPNIVALLDSGEA-PPGLLFAVF 58

Query: 407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNI 466
           +Y+P  +L  +L      G +P     RL L       LA  H      + H  L   NI
Sbjct: 59  EYVPGRTLREVLAAD---GALPAGETGRLML--QVLDALACAH---NQGIVHRDLKPQNI 110

Query: 467 VVDQLG---NACISDIGV------------------HQLFHTPFFINDAYNAPELKFNNN 505
           +V Q G   +A + D G+                   ++  TP      Y APE +    
Sbjct: 111 MVSQTGVRPHAKVLDFGIGTLLPGVRDADVATLTRTTEVLGTP-----TYCAPE-QLRGE 164

Query: 506 NNYSQRKFWQRCDVYSFGVVLLEILTGKMA 535
                       D+Y++G++ LE LTG+  
Sbjct: 165 PVTPN------SDLYAWGLIFLECLTGQRV 188

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 44/169 (26%)

Query: 399 KDELFLVYDYLPHGSLHSLLHGSRGPGRMPVD-WNKRLKLASDSAKGLAFLHGYNKAHLF 457
           K  L+L+ ++LP G + +LL             +     LA D+   L F+         
Sbjct: 73  KRNLYLIMEFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQLGFI--------- 123

Query: 458 HGHLSSSNIVVDQLGNACISDI----GVHQLFHTPFFINDAYNAP-ELKFNNNNNYSQRK 512
           H  +   N+++D  G+  +SD     G+ +   T F+ N  +N P +  F N N+  + +
Sbjct: 124 HRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAE 183

Query: 513 FWQR-----------------------------CDVYSFGVVLLEILTG 532
            W++                             CD +S GV++ E+L G
Sbjct: 184 TWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIG 232

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite outgrowth. It is also implicated in fear conditioning as it contributes to the coupling of neuronal morphological changes with fear-memory consolidation. NDR2 is also referred to as STK38-like. Length = 360

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 40.2 bits (95), Expect = 0.002
 Identities = 47/199 (23%), Positives = 83/199 (41%), Gaps = 56/199 (28%)

Query: 358 DVVVVKRI-RERKKKREVDEWLRVIGGLRHSNIVSIRA-----YCNGKDELFLVYDYLPH 411
           D++  KRI RE          ++++  LRH NI+ +            +++++V + +  
Sbjct: 39  DLIDAKRILRE----------IKLLRHLRHENIIGLLDILRPPSPEDFNDVYIVTELMET 88

Query: 412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAK--------GLAFLHGYNKAHLFHGHLSS 463
             LH ++  S  P            L  D  +        GL +LH    A++ H  L  
Sbjct: 89  -DLHKVIK-SPQP------------LTDDHIQYFLYQILRGLKYLH---SANVIHRDLKP 131

Query: 464 SNIVVDQLGNACISDIG---------VHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFW 514
           SNI+V+   +  I D G           + F T + +   Y APEL  +++  Y++    
Sbjct: 132 SNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSR-YTKA--- 187

Query: 515 QRCDVYSFGVVLLEILTGK 533
              D++S G +  E+LT K
Sbjct: 188 --IDIWSVGCIFAELLTRK 204

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 56/283 (19%), Positives = 124/283 (43%), Gaps = 48/283 (16%)

Query: 327 FRNVGDLLKSSAELLGKGCVGATYKVV-LDGGDVVVVKRI-----RERKKKREVDEWLRV 380
           F+   + L +    +G G  GA Y    +   +VV +K++     +  +K +++ + ++ 
Sbjct: 19  FKEDPEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKF 78

Query: 381 IGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLAS- 439
           +  ++H N +  +     +   +LV +Y   GS   LL   + P        + +++A+ 
Sbjct: 79  LQRIKHPNSIEYKGCYLREHTAWLVMEYC-LGSASDLLEVHKKP-------LQEVEIAAI 130

Query: 440 --DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIG-------VHQLFHTPFF 490
              + +GLA+LH +N   + H  + + NI++ + G   ++D G        +    TP++
Sbjct: 131 THGALQGLAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSASIASPANSFVGTPYW 187

Query: 491 INDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMM 550
           +     APE+    +    + ++  + DV+S G+  +E+   K    +  +  +  +  +
Sbjct: 188 M-----APEVILAMD----EGQYDGKVDVWSLGITCIELAERKPPLFN--MNAMSALYHI 236

Query: 551 GQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRP 593
            Q+ES         +   E  +  R  +     CL  +P+DRP
Sbjct: 237 AQNESP-------TLQSNEWSDYFRNFVDS---CLQKIPQDRP 269

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 25/131 (19%)

Query: 92  QLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYE 151
            L+ L L +N + S    L + P+LK+L LS N  +   P  +S+L +L  +DLS N   
Sbjct: 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS 199

Query: 152 GEIP----------------------MTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSI 189
            ++P                      ++ L+ L NL  L L +N+    L     +  ++
Sbjct: 200 -DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNL 257

Query: 190 LDFNVSNNQLS 200
              ++SNNQ+S
Sbjct: 258 ETLDLSNNQIS 268

Length = 394

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 44/267 (16%)

Query: 341 LGKGCVGATYKVV-LDGGDVVVVKRI-----RERKKKREVDEWLRVIGGLRHSNIVSIRA 394
           +G G  GA Y        +VV VK++     +  +K +++ + ++ +  L+H N +  + 
Sbjct: 29  IGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKG 88

Query: 395 YCNGKDEL-FLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNK 453
            C  K+   +LV +Y   GS   LL   +     P+   +   +   + +GLA+LH +N 
Sbjct: 89  -CYLKEHTAWLVMEYC-LGSASDLLEVHK----KPLQEVEIAAITHGALQGLAYLHSHN- 141

Query: 454 AHLFHGHLSSSNIVVDQLGNACISDIG-------VHQLFHTPFFINDAYNAPELKFNNNN 506
             + H  + + NI++ + G   ++D G        +    TP+++     APE+    + 
Sbjct: 142 --MIHRDIKAGNILLTEPGQVKLADFGSASKSSPANSFVGTPYWM-----APEVILAMD- 193

Query: 507 NYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM 566
              + ++  + DV+S G+  +E+   K    +  +  +  +  + Q++S         + 
Sbjct: 194 ---EGQYDGKVDVWSLGITCIELAERKPPLFN--MNAMSALYHIAQNDSP-------TLQ 241

Query: 567 DKEMEEEMRALLQVALLCLAPLPKDRP 593
             E  +  R  +     CL  +P++RP
Sbjct: 242 SNEWTDSFRGFVD---YCLQKIPQERP 265

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 39.7 bits (92), Expect = 0.004
 Identities = 56/211 (26%), Positives = 93/211 (44%), Gaps = 33/211 (15%)

Query: 339 ELLGKGCVGATYKVVL----DGGDVVVVKRIRERK--KKREVDEWL---RVIGGLRHSNI 389
           +LLGKG  G   KV+L      G    +K +++     K EV   L   RV+   RH  +
Sbjct: 1   KLLGKGTFG---KVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFL 57

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH 449
            S++     KD L  V +Y+  G L    H SR   R+  +   R    ++    L +LH
Sbjct: 58  TSLKYSFQTKDRLCFVMEYVNGGEL--FFHLSR--ERVFSEDRTRF-YGAEIVSALDYLH 112

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------PFFINDAYNAPELKFN 503
                 + +  L   N+++D+ G+  I+D G+ +   T       F     Y APE+   
Sbjct: 113 ---SGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVL-- 167

Query: 504 NNNNYSQRKFWQRCDVYSFGVVLLEILTGKM 534
            +N+Y +   W     +  GVV+ E++ G++
Sbjct: 168 EDNDYGRAVDW-----WGLGVVMYEMMCGRL 193

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 17/139 (12%)

Query: 79  DLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNL------SSWPHLKHLYLSHNRFTGT--- 129
           D  G  E L R + L+ L L NN L    L L         P L+ L L  NR  G    
Sbjct: 96  DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155

Query: 130 -FPSGVSSLRHLRRVDLSHNAYEGE-IPMT--ELTRLPNLLTLRLEDNRFT----GTLYS 181
                + + R L+ ++L++N      I      L    NL  L L +N  T      L  
Sbjct: 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE 215

Query: 182 VNSSSRSILDFNVSNNQLS 200
             +S +S+   N+ +N L+
Sbjct: 216 TLASLKSLEVLNLGDNNLT 234

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	640
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG3653	534	consensus Transforming growth factor beta/activin	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
KOG2052	513	consensus Activin A type IB receptor, serine/threo	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
PTZ00284	467	protein kinase; Provisional	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	100.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.98
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.98
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.98
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.98
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.98
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.98
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.98
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.98
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.97
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.97
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.97
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.97
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.97
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.97
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.97
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.97
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.97
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.97
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.97
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.97
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.97
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.97
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.97
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.97
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.97
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.97
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.97
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.97
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.97
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.97
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.97
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.97
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.97
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.96
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.96
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.96
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.96
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.96
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.95
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.95
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.95
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.95
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.95
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.94
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.94
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.94
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.93
KOG1152	772	consensus Signal transduction serine/threonine kin	99.93
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.93
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.92
PLN00181	793	protein SPA1-RELATED; Provisional	99.92
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.92
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.9
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.9
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
PRK09188	365	serine/threonine protein kinase; Provisional	99.87
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.87
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.83
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.82
PLN03150	623	hypothetical protein; Provisional	99.82
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.81
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.81
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.81
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.8
PRK12274	218	serine/threonine protein kinase; Provisional	99.79
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.78
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.78
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.77
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.76
PRK10345	210	hypothetical protein; Provisional	99.75
PRK14879	211	serine/threonine protein kinase; Provisional	99.7
smart00090	237	RIO RIO-like kinase.	99.7
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.7
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.68
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.68
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.67
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.62
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.59
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.58
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.58
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.55
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.53
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.5
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.44
PLN03150	623	hypothetical protein; Provisional	99.4
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.38
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.37
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.34
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.26
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.23
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.23
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.22
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.17
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.15
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.13
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.12
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.09
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.08
KOG1243	690	consensus Protein kinase [General function predict	99.06
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.06
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.03
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.02
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.02
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.96
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.95
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.93
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.81
KOG3087	229	consensus Serine/threonine protein kinase [General	98.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.77
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.76
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.73
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.72
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.7
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.69
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.68
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.67
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.66
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.65
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.61
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.61
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.61
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.59
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.49
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.36
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.36
COG4248	637	Uncharacterized protein with protein kinase and he	98.33
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.32
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.31
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.26
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.23
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.17
PRK09902	216	hypothetical protein; Provisional	98.17
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.14
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.13
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.12
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.09
KOG1235	538	consensus Predicted unusual protein kinase [Genera	97.92
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.92
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.87
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	97.87
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	97.84
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.83

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.9e-61  Score=572.37  Aligned_cols=490  Identities=28%  Similarity=0.433  Sum_probs=346.9

Q ss_pred             EEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccC
Q 006559           70 VIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN  148 (640)
Q Consensus        70 v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  148 (640)
                      +..|+|++|.+.|..+....+++|+.|+|++|.+++..+ .+.++++|+.|+|++|+++|.+|..++++++|+.|+|++|
T Consensus       454 L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  533 (968)
T PLN00113        454 LQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN  533 (968)
T ss_pred             CcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCC
Confidence            444555555555544334445677778888888877655 5778889999999999999999999999999999999999


Q ss_pred             CCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcc--cCCCCCCCCCCCcccCCCCC
Q 006559          149 AYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAW--MSPFGGSSFAGNKNLCGRPL  226 (640)
Q Consensus       149 ~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~--~~~~~~~~~~gn~~lcg~~~  226 (640)
                      .++|.+| ..+..+++|+.|+|++|+++|.+|..+..+.+|+.|++++|+++|.+|..  +..+....+.||+.+||.+.
T Consensus       534 ~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~  612 (968)
T PLN00113        534 QLSGQIP-ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDT  612 (968)
T ss_pred             cccccCC-hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCcc
Confidence            9999888 77889999999999999999999999888999999999999999999963  45677788999999998653


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCceEEEEeeehhHHHHHHHHHhhheeeeeeccccccCCCCCccceeecccCCCCCCCC
Q 006559          227 PSDCSNRTVEPEQPPRSRPRSSRVVTVIVIVIFDAVAILVAVVTVTWCCYKRKRRSLRNGGGGVHKEVVMKRGNRKGDYG  306 (640)
Q Consensus       227 ~~~c~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~v~~~~~~~~~~~~~~rrkr~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (640)
                      ...-     .    ++...++.....++++++++++++++++ +++++++||+++... ..      ...    ..+.  
T Consensus       613 ~~~~-----~----~c~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~------~~~----~~~~--  669 (968)
T PLN00113        613 TSGL-----P----PCKRVRKTPSWWFYITCTLGAFLVLALV-AFGFVFIRGRNNLEL-KR------VEN----EDGT--  669 (968)
T ss_pred             ccCC-----C----CCccccccceeeeehhHHHHHHHHHHHH-HHHHHHHHhhhcccc-cc------ccc----cccc--
Confidence            2100     0    0110111111112222222222222222 222222222221110 00      000    0000  


Q ss_pred             CCCCCCCcceeeeeccC-CCCccChHHHHHH--hhccccccCcceEEEEEe-CCCcEEEEEEeccccchHHHHHHHHHHh
Q 006559          307 GARDGGDVEEMVMFEGC-NKGFRNVGDLLKS--SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVIG  382 (640)
Q Consensus       307 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~~~~~e~~~l~  382 (640)
                              .+...+... ...+ +.++....  ..++||+|+||.||+|+. .++..||||++......  ..+|++.++
T Consensus       670 --------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--~~~~~~~l~  738 (968)
T PLN00113        670 --------WELQFFDSKVSKSI-TINDILSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSI--PSSEIADMG  738 (968)
T ss_pred             --------ccccccccccchhh-hHHHHHhhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccc--cHHHHHHHh
Confidence                    011111100 0011 33333333  245799999999999996 57889999998754321  234578899


Q ss_pred             ccCCCcccceeEEEEcCCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCC
Q 006559          383 GLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLS  462 (640)
Q Consensus       383 ~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk  462 (640)
                      +++|||||+++|+|...+..|+|||||++|+|.++++        .++|..+.+++.|+|+||+|||+.+.++|+|||||
T Consensus       739 ~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~--------~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlk  810 (968)
T PLN00113        739 KLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLR--------NLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLS  810 (968)
T ss_pred             hCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHh--------cCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCC
Confidence            9999999999999999999999999999999999996        27899999999999999999998777889999999


Q ss_pred             CCCeEECCCCCeEEccCCcccccC--CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCC--
Q 006559          463 SSNIVVDQLGNACISDIGVHQLFH--TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD--  538 (640)
Q Consensus       463 ~~NILl~~~~~~kl~DfGl~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~--  538 (640)
                      |+||+++.++.+++. ||......  ....++..|+|||++       ....++.|+|||||||++|||+||+.||+.  
T Consensus       811 p~Nil~~~~~~~~~~-~~~~~~~~~~~~~~~t~~y~aPE~~-------~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~  882 (968)
T PLN00113        811 PEKIIIDGKDEPHLR-LSLPGLLCTDTKCFISSAYVAPETR-------ETKDITEKSDIYGFGLILIELLTGKSPADAEF  882 (968)
T ss_pred             HHhEEECCCCceEEE-eccccccccCCCccccccccCcccc-------cCCCCCcccchhhHHHHHHHHHhCCCCCCccc
Confidence            999999999988875 66654432  233457899999964       445678999999999999999999999863  


Q ss_pred             -CCcchHHHHHHhhcccccccccchhhccC-hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 006559          539 -GELGIVKWVQMMGQDESAWEVFDFELIMD-KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGS  610 (640)
Q Consensus       539 -~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~  610 (640)
                       ......+|++...........+|+.+... ....+++.++.+++.+||+.+|++||+|.||+++|+++....+
T Consensus       883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~L~~~~~~~~  956 (968)
T PLN00113        883 GVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTLESASRSSS  956 (968)
T ss_pred             CCCCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHHHHHHHhhCcCCchhCcCHHHHHHHHHHhhcccc
Confidence             23457778776554433334445443221 1224566788999999999999999999999999999876433

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1e-53  Score=445.46  Aligned_cols=261  Identities=40%  Similarity=0.658  Sum_probs=229.7

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccccc--hHHHHHHHHHHhccCCCcccceeEEEEcCC-eEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERKK--KREVDEWLRVIGGLRHSNIVSIRAYCNGKD-ELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~--~~~~~~e~~~l~~l~H~niv~l~~~~~~~~-~~~lV~Ey~~~gsL  414 (640)
                      .++||+|+||.||+|.+++|..||||++.....  .++|..|+.++.+++|||+|+|+|||.+.+ +.+||||||++|+|
T Consensus        80 ~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e~~~~~~LVYEym~nGsL  159 (361)
T KOG1187|consen   80 SNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYCLEGGEHRLLVYEYMPNGSL  159 (361)
T ss_pred             hcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEEecCCceEEEEEEccCCCCH
Confidence            368999999999999999999999999887644  577999999999999999999999999988 59999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-Cc----
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-PF----  489 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-~~----  489 (640)
                      .++|+.....   +++|..|++||.++|+||+|||+.+.++||||||||+|||||+++++||+|||+++.... ..    
T Consensus       160 ~d~L~~~~~~---~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~~~~~~~  236 (361)
T KOG1187|consen  160 EDHLHGKKGE---PLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEGDTSVST  236 (361)
T ss_pred             HHHhCCCCCC---CCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcccCCccccceee
Confidence            9999976532   789999999999999999999999988999999999999999999999999999976542 11    


Q ss_pred             --cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCC----CCcchHHHHHHhhcccccccccchh
Q 006559          490 --FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD----GELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       490 --~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~----~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                        .+|.+|+|||       +...+..++|+|||||||+|+||+||+.|.+.    .+..++.|+.....+....+++|+.
T Consensus       237 ~~~gt~gY~~PE-------y~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~  309 (361)
T KOG1187|consen  237 TVMGTFGYLAPE-------YASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPR  309 (361)
T ss_pred             ecCCCCccCChh-------hhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCC
Confidence              5688999999       45667889999999999999999999988873    3455899998877777888999999


Q ss_pred             hccChHH-HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          564 LIMDKEM-EEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       564 ~~~~~~~-~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      +...... .+++.++..+|.+|++.+|++||+|.+|+++|+.+...
T Consensus       310 l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~~~  355 (361)
T KOG1187|consen  310 LKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVKELEGILSL  355 (361)
T ss_pred             ccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhccc
Confidence            8632222 26888899999999999999999999999999776644

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-47  Score=395.72  Aligned_cols=251  Identities=31%  Similarity=0.453  Sum_probs=203.7

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCC-eEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKD-ELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~-~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||+||+|.+++...||||++....    ..++|.+|+.+|.+++|||||+|+|+|.+.. ..++|||||++|
T Consensus        46 ~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~G  125 (362)
T KOG0192|consen   46 EEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMPGG  125 (362)
T ss_pred             hhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCCCC
Confidence            45699999999999999987779999998642    2458999999999999999999999999887 799999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC-CeEEccCCcccccCCC---
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG-NACISDIGVHQLFHTP---  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~-~~kl~DfGl~~~~~~~---  488 (640)
                      +|.++++...   ...+++..+++++.|||+||.|||+..+  ||||||||+|||++.++ ++||+|||+++.....   
T Consensus       126 sL~~~l~~~~---~~~l~~~~~l~~aldiArGm~YLH~~~~--iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~~~  200 (362)
T KOG0192|consen  126 SLSVLLHKKR---KRKLPLKVRLRIALDIARGMEYLHSEGP--IIHRDLKSDNILVDLKGKTLKIADFGLSREKVISKTS  200 (362)
T ss_pred             cHHHHHhhcc---cCCCCHHHHHHHHHHHHHHHHHHhcCCC--eeecccChhhEEEcCCCCEEEECCCccceeecccccc
Confidence            9999998741   2369999999999999999999996532  99999999999999997 9999999999776532   


Q ss_pred             ---ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHhhcccccccccchhh
Q 006559          489 ---FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       489 ---~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         ..+|..|||||++...     ...|+.|+|||||||+||||+||+.||.+.... ....+......          .
T Consensus       201 ~~~~~GT~~wMAPEv~~~~-----~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~~~~~~v~~~~~R----------p  265 (362)
T KOG0192|consen  201 MTSVAGTYRWMAPEVLRGE-----KSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPVQVASAVVVGGLR----------P  265 (362)
T ss_pred             ccCCCCCccccChhhhcCC-----CCcCCccchhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCC----------C
Confidence               4668899999986432     567899999999999999999999999864331 11111111111          0


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCCC
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSI  611 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~~  611 (640)
                      ..+.   ++...+..++.+||+.||++||++.+++..|+.+......
T Consensus       266 ~~p~---~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~~~~~  309 (362)
T KOG0192|consen  266 PIPK---ECPPHLSSLMERCWLVDPSRRPSFLEIVSRLESIMSHISS  309 (362)
T ss_pred             CCCc---cCCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHHhhcc
Confidence            1111   1444566777779999999999999999999998765443

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-47  Score=393.54  Aligned_cols=247  Identities=26%  Similarity=0.425  Sum_probs=207.0

Q ss_pred             HhhccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          336 SSAELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       336 ~~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ...+.||+|-||.||.|++++...||+|.++.. ...++|.+|+.+|++|+|+|||+++|+|..++.+|||||||+.|+|
T Consensus       209 ~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~GsL  288 (468)
T KOG0197|consen  209 KLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKGSL  288 (468)
T ss_pred             HHHHHhcCCccceEEEEEEcCCCcccceEEeccccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecccCcH
Confidence            346789999999999999999989999999986 4558899999999999999999999999998899999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCccc---
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFI---  491 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~~~---  491 (640)
                      .++|+...   ...+.-.+.+.++.|||+||+||++.   ++|||||.++|||++++..+||+||||+|......+.   
T Consensus       289 l~yLr~~~---~~~l~~~~Ll~~a~qIaeGM~YLes~---~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~  362 (468)
T KOG0197|consen  289 LDYLRTRE---GGLLNLPQLLDFAAQIAEGMAYLESK---NYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTASE  362 (468)
T ss_pred             HHHhhhcC---CCccchHHHHHHHHHHHHHHHHHHhC---CccchhhhhhheeeccCceEEEcccccccccCCCceeecC
Confidence            99998732   23578889999999999999999954   4999999999999999999999999999976544332   


Q ss_pred             ----cccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          492 ----NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       492 ----~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                          ...|.|||.       +...+|+.|||||||||+||||+| |+.|+..  +...+.++.+.+..+        +..
T Consensus       363 ~~kfPIkWtAPEa-------~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~--msn~ev~~~le~GyR--------lp~  425 (468)
T KOG0197|consen  363 GGKFPIKWTAPEA-------LNYGKFSSKSDVWSFGVLLWELFTYGRVPYPG--MSNEEVLELLERGYR--------LPR  425 (468)
T ss_pred             CCCCCceecCHHH-------HhhCCcccccceeehhhhHHHHhccCCCCCCC--CCHHHHHHHHhccCc--------CCC
Confidence                346889994       567789999999999999999999 8999864  233333333333221        111


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                         ...++..+.++|..||+.+|++|||++.+...|+++...
T Consensus       426 ---P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~~~~~  464 (468)
T KOG0197|consen  426 ---PEGCPDEVYELMKSCWHEDPEDRPTFETLREVLEDFFTS  464 (468)
T ss_pred             ---CCCCCHHHHHHHHHHhhCCcccCCCHHHHHHHHHHhhhc
Confidence               234666788899999999999999999999999998754

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3e-46  Score=402.42  Aligned_cols=248  Identities=26%  Similarity=0.447  Sum_probs=204.5

Q ss_pred             hhccccccCcceEEEEEeCC------CcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVLDG------GDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~------~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||+||+|+..+      .+.||||.+++.   +.+++|++|+++++.++|||||+|+|+|..++.++||+|
T Consensus       490 ~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~~MvFE  569 (774)
T KOG1026|consen  490 FKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPLCMVFE  569 (774)
T ss_pred             ehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCeeEEEEE
Confidence            35679999999999998543      356999999977   356889999999999999999999999999999999999


Q ss_pred             ccCCCCHHHhhccCCCC---------CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEcc
Q 006559          408 YLPHGSLHSLLHGSRGP---------GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISD  478 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~---------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~D  478 (640)
                      ||..|||++||+.....         .+.+++..+.+.||.|||.||+||-   ..++|||||.++|+|+.++..+||+|
T Consensus       570 Ym~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs---~~~FVHRDLATRNCLVge~l~VKIsD  646 (774)
T KOG1026|consen  570 YMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLS---SHHFVHRDLATRNCLVGENLVVKISD  646 (774)
T ss_pred             ecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---hCcccccchhhhhceeccceEEEecc
Confidence            99999999999754321         1335889999999999999999998   45599999999999999999999999


Q ss_pred             CCcccccC-CCcc-------ccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCc-chHHHHH
Q 006559          479 IGVHQLFH-TPFF-------INDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGEL-GIVKWVQ  548 (640)
Q Consensus       479 fGl~~~~~-~~~~-------~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~-~~~~~~~  548 (640)
                      |||+|-.. .+++       ...+||+||       ++..++||++||||||||+|||++| |+.||.+-.. ..++.++
T Consensus       647 fGLsRdiYssDYYk~~~~t~lPIRWMppE-------sIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVIe~i~  719 (774)
T KOG1026|consen  647 FGLSRDIYSSDYYKVRGNTLLPIRWMPPE-------SILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVIECIR  719 (774)
T ss_pred             cccchhhhhhhhhcccCCceeeeecCCHH-------HhhcCcccchhhhhhhhhhhhhhhccccCcccccchHHHHHHHH
Confidence            99998653 3332       245789998       6778899999999999999999999 9999875221 2222211


Q ss_pred             HhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          549 MMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       549 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                          .        ..+.  +..+.++.+++.+|+.||+.+|++||+++||...|+.....
T Consensus       720 ----~--------g~lL--~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~  765 (774)
T KOG1026|consen  720 ----A--------GQLL--SCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQA  765 (774)
T ss_pred             ----c--------CCcc--cCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHhc
Confidence                1        1111  22346778899999999999999999999999999997644

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-45  Score=360.94  Aligned_cols=241  Identities=22%  Similarity=0.363  Sum_probs=196.3

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCC-eEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKD-ELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~-~~~lV~Ey~~~g  412 (640)
                      ...||+|..|+|||++++ ++..+|+|.+...   ..++++.+|++++++.+||+||+++|.|.... +..|+||||.+|
T Consensus        84 ~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEYMDgG  163 (364)
T KOG0581|consen   84 LGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEYMDGG  163 (364)
T ss_pred             hhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhhcCCC
Confidence            567999999999999975 5788999999544   45788999999999999999999999999988 599999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC----CC
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH----TP  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~----~~  488 (640)
                      +|++++...+     .+++...-+|+.+|.+||.|||+  +.+||||||||+|||++..|++||||||.++.+.    ..
T Consensus       164 SLd~~~k~~g-----~i~E~~L~~ia~~VL~GL~YLh~--~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS~a~t  236 (364)
T KOG0581|consen  164 SLDDILKRVG-----RIPEPVLGKIARAVLRGLSYLHE--ERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNSIANT  236 (364)
T ss_pred             CHHHHHhhcC-----CCCHHHHHHHHHHHHHHHHHHhh--ccCeeeccCCHHHeeeccCCCEEeccccccHHhhhhhccc
Confidence            9999998653     47888999999999999999995  3679999999999999999999999999987754    45


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchh-hccC
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE-LIMD  567 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~  567 (640)
                      +++|..|||||.+       .+..|+.++||||||+.++|+++|+.|+.........|...+      ..|++.. ...+
T Consensus       237 fvGT~~YMsPERi-------~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll------~~Iv~~ppP~lP  303 (364)
T KOG0581|consen  237 FVGTSAYMSPERI-------SGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELL------CAIVDEPPPRLP  303 (364)
T ss_pred             ccccccccChhhh-------cCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHH------HHHhcCCCCCCC
Confidence            7789999999964       555778899999999999999999999975422222222221      1223311 1112


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..  .+..++..++..|+++||.+||++.|+++
T Consensus       304 ~~--~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~  334 (364)
T KOG0581|consen  304 EG--EFSPEFRSFVSCCLRKDPSERPSAKQLLQ  334 (364)
T ss_pred             cc--cCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            11  34456777777899999999999998864

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1e-43  Score=335.18  Aligned_cols=239  Identities=21%  Similarity=0.342  Sum_probs=190.9

Q ss_pred             hhccccccCcceEEEEE-eCCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeE-EEEcCCe-EEEEEecc
Q 006559          337 SAELLGKGCVGATYKVV-LDGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRA-YCNGKDE-LFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~-~~~~~~~-~~lV~Ey~  409 (640)
                      ..++||+|.||+|||+. +.+|..||.|.++-.    +.+++...|+.+|++|+|||||++++ .+.+..+ ++||||||
T Consensus        23 Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivmE~c  102 (375)
T KOG0591|consen   23 ILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVMELC  102 (375)
T ss_pred             HHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHHHhh
Confidence            36789999999999998 678999999998733    34567889999999999999999998 4544444 89999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCC--ceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAH--LFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~--ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      ..|+|...++..+. ....+++..+++++.|+++||.++|+.- ++  |+||||||.||+|+++|.+|++||||++++.+
T Consensus       103 ~~GDLsqmIk~~K~-qkr~ipE~~Vwk~f~QL~~AL~~cH~~~-~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s  180 (375)
T KOG0591|consen  103 DAGDLSQMIKHFKK-QKRLIPEKTVWKYFVQLCRALYHCHSKI-PRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSS  180 (375)
T ss_pred             cccCHHHHHHHHHh-ccccCchHHHHHHHHHHHHHHHHHhccc-cccceeeccCcchheEEcCCCceeeccchhHhHhcc
Confidence            99999999875543 2345899999999999999999999732 34  99999999999999999999999999998754


Q ss_pred             ------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccc
Q 006559          488 ------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFD  561 (640)
Q Consensus       488 ------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  561 (640)
                            ++++|+.||+||++       ....|+.||||||+||++|||+.-++||.+.  ++.+..+.+.+.       |
T Consensus       181 ~~tfA~S~VGTPyYMSPE~i-------~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~--n~~~L~~KI~qg-------d  244 (375)
T KOG0591|consen  181 KTTFAHSLVGTPYYMSPERI-------HESGYNFKSDIWSLGCLLYEMCALQSPFYGD--NLLSLCKKIEQG-------D  244 (375)
T ss_pred             hhHHHHhhcCCCcccCHHHH-------hcCCCCcchhHHHHHHHHHHHHhcCCCcccc--cHHHHHHHHHcC-------C
Confidence                  46789999999975       4456778999999999999999999999865  344333333322       2


Q ss_pred             hhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHH
Q 006559          562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMS  596 (640)
Q Consensus       562 ~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~  596 (640)
                      .....+...++   ++.+++..|+..||+.||+..
T Consensus       245 ~~~~p~~~YS~---~l~~li~~ci~vd~~~RP~t~  276 (375)
T KOG0591|consen  245 YPPLPDEHYST---DLRELINMCIAVDPEQRPDTV  276 (375)
T ss_pred             CCCCcHHHhhh---HHHHHHHHHccCCcccCCCcc
Confidence            22122233444   455566669999999999853

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=5.8e-43  Score=346.48  Aligned_cols=239  Identities=21%  Similarity=0.319  Sum_probs=190.1

Q ss_pred             hccccccCcceEEEEE-eCCCcEEEEEEecccc---------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          338 AELLGKGCVGATYKVV-LDGGDVVVVKRIRERK---------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~~---------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      .+.+|+|+||.|-+|. .++|+.||||.+.+.+         ....+.+|+++|++|+|||||+++++|...+..|||||
T Consensus       177 ~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~YmVlE  256 (475)
T KOG0615|consen  177 SKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDSSYMVLE  256 (475)
T ss_pred             eeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCceEEEEE
Confidence            5679999999999998 5679999999997541         12345799999999999999999999999999999999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC---CCeEEccCCcccc
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL---GNACISDIGVHQL  484 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~---~~~kl~DfGl~~~  484 (640)
                      ||++|+|.+.+-.++     .+.+.....++.|++.|+.|||   +.+|+||||||+|||+..+   ..+||+|||+|+.
T Consensus       257 ~v~GGeLfd~vv~nk-----~l~ed~~K~~f~Qll~avkYLH---~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~  328 (475)
T KOG0615|consen  257 YVEGGELFDKVVANK-----YLREDLGKLLFKQLLTAVKYLH---SQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKV  328 (475)
T ss_pred             EecCccHHHHHHhcc-----ccccchhHHHHHHHHHHHHHHH---HcCcccccCCcceEEeccCCcceEEEecccchhhc
Confidence            999999999987654     3566677889999999999999   5569999999999999765   7899999999998


Q ss_pred             cCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc--hHHHHHHhhcccccc
Q 006559          485 FHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG--IVKWVQMMGQDESAW  557 (640)
Q Consensus       485 ~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~--~~~~~~~~~~~~~~~  557 (640)
                      .+.     ..++|+.|.|||++......    .+..|+|+||+||+||-+++|.+||.+....  +.+-           
T Consensus       329 ~g~~sfm~TlCGTpsYvAPEVl~~kg~~----~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQ-----------  393 (475)
T KOG0615|consen  329 SGEGSFMKTLCGTPSYVAPEVLASKGVE----YYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQ-----------  393 (475)
T ss_pred             cccceehhhhcCCccccChhheecCCee----cccchheeeeccceEEEEeccCCCcccccCCccHHHH-----------
Confidence            753     45789999999998544222    2335899999999999999999999864322  1111           


Q ss_pred             cccchhhccC-hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          558 EVFDFELIMD-KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       558 ~~~d~~~~~~-~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       +........ ....+...+.++++.+++..||++|||+.|+++
T Consensus       394 -I~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~  436 (475)
T KOG0615|consen  394 -ILKGRYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEALN  436 (475)
T ss_pred             -HhcCcccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhc
Confidence             111111111 122334456777788899999999999999974

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-42  Score=344.19  Aligned_cols=187  Identities=24%  Similarity=0.385  Sum_probs=165.2

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||+||+|+++ ++..||||.+....    ..+-...|+.+|+.++|||||++++++..++..|||||||.+|
T Consensus        15 ~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVMEyC~gG   94 (429)
T KOG0595|consen   15 SREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVMEYCNGG   94 (429)
T ss_pred             hhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEEEeCCCC
Confidence            345999999999999964 57889999997663    2344678999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC------CCeEEccCCcccccC
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL------GNACISDIGVHQLFH  486 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~------~~~kl~DfGl~~~~~  486 (640)
                      ||.+|++..+     .++......++.|+|.||++||   +.+||||||||.||||+..      -.+||+|||+++.+.
T Consensus        95 DLs~yi~~~~-----~l~e~t~r~Fm~QLA~alq~L~---~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~  166 (429)
T KOG0595|consen   95 DLSDYIRRRG-----RLPEATARHFMQQLASALQFLH---ENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQ  166 (429)
T ss_pred             CHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCC
Confidence            9999999764     5888999999999999999999   5569999999999999864      468999999999987


Q ss_pred             CC-----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 006559          487 TP-----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG  539 (640)
Q Consensus       487 ~~-----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~  539 (640)
                      +.     .++++-|||||++       ..++|+.|+|+||.|+++||+++|+.||+..
T Consensus       167 ~~~~a~tlcGSplYMAPEV~-------~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~  217 (429)
T KOG0595|consen  167 PGSMAETLCGSPLYMAPEVI-------MSQQYDAKADLWSIGTILYQCLTGKPPFDAE  217 (429)
T ss_pred             chhHHHHhhCCccccCHHHH-------HhccccchhhHHHHHHHHHHHHhCCCCcccc
Confidence            53     4679999999974       4678999999999999999999999999843

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.7e-42  Score=358.55  Aligned_cols=235  Identities=23%  Similarity=0.372  Sum_probs=193.4

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..++||+|||+.+|.++. ..|+.||+|++.++     ..++.+.+|+++.+.|+|||||+++++|++.+..|||.|+|+
T Consensus        22 ~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivLELC~  101 (592)
T KOG0575|consen   22 RGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVLELCH  101 (592)
T ss_pred             eeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEEEecC
Confidence            467899999999999996 88999999999764     345668899999999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                      +|+|.++++..+     ++++.+...+..||+.||.|||+.   +|||||||..|++|++++++||+|||||..+..   
T Consensus       102 ~~sL~el~Krrk-----~ltEpEary~l~QIv~GlkYLH~~---~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~E  173 (592)
T KOG0575|consen  102 RGSLMELLKRRK-----PLTEPEARYFLRQIVEGLKYLHSL---GIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGE  173 (592)
T ss_pred             CccHHHHHHhcC-----CCCcHHHHHHHHHHHHHHHHHHhc---CceecccchhheeecCcCcEEecccceeeeecCccc
Confidence            999999998433     799999999999999999999954   499999999999999999999999999988763   


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         ..++|+.|+|||++.       ...++..+||||+||+||-|++|++||+....  .+-...         +...+.
T Consensus       174 rk~TlCGTPNYIAPEVl~-------k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~v--kety~~---------Ik~~~Y  235 (592)
T KOG0575|consen  174 RKKTLCGTPNYIAPEVLN-------KSGHSFEVDIWSLGCVMYTLLVGRPPFETKTV--KETYNK---------IKLNEY  235 (592)
T ss_pred             ccceecCCCcccChhHhc-------cCCCCCchhhhhhhhHHHhhhhCCCCcccchH--HHHHHH---------HHhcCc
Confidence               357899999999864       34555689999999999999999999975321  111111         111122


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..+.....+   ..+++...|+++|.+|||+.+|+.
T Consensus       236 ~~P~~ls~~---A~dLI~~lL~~~P~~Rpsl~~vL~  268 (592)
T KOG0575|consen  236 SMPSHLSAE---AKDLIRKLLRPNPSERPSLDEVLD  268 (592)
T ss_pred             ccccccCHH---HHHHHHHHhcCCcccCCCHHHHhc
Confidence            222233333   445666799999999999999974

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-42  Score=383.28  Aligned_cols=248  Identities=25%  Similarity=0.395  Sum_probs=201.7

Q ss_pred             hhccccccCcceEEEEEeCC--Cc----EEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVLDG--GD----VVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~--~~----~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||.||.|.+.+  |.    .||||.+++.   +...+|.+|..+|++++|||||+++|+|.+....+|++|
T Consensus       696 l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~i~le  775 (1025)
T KOG1095|consen  696 LLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPLILLE  775 (1025)
T ss_pred             eeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcEEEeh
Confidence            45689999999999999654  33    3899999876   345678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHhhccCCCC--CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccc-c
Q 006559          408 YLPHGSLHSLLHGSRGP--GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ-L  484 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~--~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~-~  484 (640)
                      ||++|+|..||++.+..  ....+...+.+.++.|||+|+.||+   +.++|||||.++|+||++...+||+|||+|+ .
T Consensus       776 yM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe---~~~fvHRDLAaRNCLL~~~r~VKIaDFGlArDi  852 (1025)
T KOG1095|consen  776 YMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLE---SKHFVHRDLAARNCLLDERRVVKIADFGLARDI  852 (1025)
T ss_pred             hcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHH---hCCCcCcchhhhheeecccCcEEEcccchhHhh
Confidence            99999999999977421  2346889999999999999999999   5669999999999999999999999999999 3


Q ss_pred             cCCCccc-------cccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCc-chHHHHHHhhcccc
Q 006559          485 FHTPFFI-------NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGEL-GIVKWVQMMGQDES  555 (640)
Q Consensus       485 ~~~~~~~-------~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~-~~~~~~~~~~~~~~  555 (640)
                      +...++.       ...|||||       ++..+.||.|+|||||||+|||++| |..||.+... .+...+..   .. 
T Consensus       853 y~~~yyr~~~~a~lPvkWm~PE-------sl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~~~~~~---gg-  921 (1025)
T KOG1095|consen  853 YDKDYYRKHGEAMLPVKWMPPE-------SLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVLLDVLE---GG-  921 (1025)
T ss_pred             hhchheeccCccccceecCCHH-------HHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHHHHHHHHh---CC-
Confidence            3333322       34688888       4566899999999999999999999 8999975322 22221111   11 


Q ss_pred             cccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          556 AWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       556 ~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                             ++..   .+.+..+++++|..||+.+|++||++..+++.++.+...
T Consensus       922 -------RL~~---P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~~~  964 (1025)
T KOG1095|consen  922 -------RLDP---PSYCPEKLYQLMLQCWKHDPEDRPSFRTIVEQDPAISNA  964 (1025)
T ss_pred             -------ccCC---CCCCChHHHHHHHHHccCChhhCccHHHHHhhhhhhhhh
Confidence                   1111   235666788999999999999999999999999998754

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=7.8e-43  Score=368.32  Aligned_cols=244  Identities=22%  Similarity=0.385  Sum_probs=204.2

Q ss_pred             hhccccccCcceEEEEEeCC----CcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLDG----GDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~----~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .+++||.|.||.||+|+++-    ...||||.++..   +.+++|..|..+|++++||||++|.|+........||.|||
T Consensus       633 Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiTEyM  712 (996)
T KOG0196|consen  633 IEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIITEYM  712 (996)
T ss_pred             EEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEhhhh
Confidence            35789999999999999753    346999999976   45678999999999999999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF  489 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~  489 (640)
                      +||+|+.||+.+.+    .|.+.+...+.++||.||.||-   +.++|||||.++|||++.+..+||+|||++|.+....
T Consensus       713 ENGsLDsFLR~~DG----qftviQLVgMLrGIAsGMkYLs---dm~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~  785 (996)
T KOG0196|consen  713 ENGSLDSFLRQNDG----QFTVIQLVGMLRGIASGMKYLS---DMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP  785 (996)
T ss_pred             hCCcHHHHHhhcCC----ceEeehHHHHHHHHHHHhHHHh---hcCchhhhhhhhheeeccceEEEeccccceeecccCC
Confidence            99999999997753    4899999999999999999999   5569999999999999999999999999999875422


Q ss_pred             ---cc------cccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC-cchHHHHHHhhccccccc
Q 006559          490 ---FI------NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGE-LGIVKWVQMMGQDESAWE  558 (640)
Q Consensus       490 ---~~------~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~-~~~~~~~~~~~~~~~~~~  558 (640)
                         +.      ...|.|||       .+..+++|.+||||||||||||.++ |..||.+-. .+.+   +.+.+      
T Consensus       786 ~~~ytt~GGKIPiRWTAPE-------AIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQdVI---kaIe~------  849 (996)
T KOG0196|consen  786 EAAYTTLGGKIPIRWTAPE-------AIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVI---KAIEQ------  849 (996)
T ss_pred             CccccccCCccceeecChh-------HhhhcccCchhhccccceEEEEecccCCCcccccchHHHH---HHHHh------
Confidence               22      34688998       5778999999999999999999988 999987422 1121   11111      


Q ss_pred             ccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       559 ~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                        +.++..   ..+++..|.++|+.||++|-.+||.+.+++..|.++...
T Consensus       850 --gyRLPp---PmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDklIrn  894 (996)
T KOG0196|consen  850 --GYRLPP---PMDCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDKLIRN  894 (996)
T ss_pred             --ccCCCC---CCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcC
Confidence              112211   236777899999999999999999999999999997644

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=1.3e-41  Score=324.04  Aligned_cols=247  Identities=23%  Similarity=0.353  Sum_probs=190.2

Q ss_pred             ccccccCcceEEEEEeC-CCcEEEEEEeccccc----hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          339 ELLGKGCVGATYKVVLD-GGDVVVVKRIRERKK----KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~----~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .++|+|+||+|||++.+ +|+.||||++.+..+    ++-..+|+++|++++|+|+|.++++|..+..++||+|||+.--
T Consensus         8 gkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~~dhTv   87 (396)
T KOG0593|consen    8 GKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEYCDHTV   87 (396)
T ss_pred             hccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEeeecchHH
Confidence            46899999999999964 589999999987644    3456789999999999999999999999999999999999865


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC------C
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH------T  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~------~  487 (640)
                      |++.-+...     -++.....+++.|+++|+.|+|+.   ++|||||||+|||+..+|.+||||||.|+.+.      +
T Consensus        88 L~eLe~~p~-----G~~~~~vk~~l~Q~l~ai~~cHk~---n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pgd~YT  159 (396)
T KOG0593|consen   88 LHELERYPN-----GVPSELVKKYLYQLLKAIHFCHKN---NCIHRDIKPENILITQNGVVKLCDFGFARTLSAPGDNYT  159 (396)
T ss_pred             HHHHHhccC-----CCCHHHHHHHHHHHHHHhhhhhhc---CeecccCChhheEEecCCcEEeccchhhHhhcCCcchhh
Confidence            555443322     367788999999999999999955   49999999999999999999999999999876      3


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC-CcchHHH-HHHhhcc-cccccccch--
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG-ELGIVKW-VQMMGQD-ESAWEVFDF--  562 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~-~~~~~~~-~~~~~~~-~~~~~~~d~--  562 (640)
                      .++.|.+|+|||++.+      ...|+..+||||.||++.||+||++-|.+. +.+..-. ++.++.- .....++..  
T Consensus       160 DYVATRWYRaPELLvG------DtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~  233 (396)
T KOG0593|consen  160 DYVATRWYRAPELLVG------DTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNP  233 (396)
T ss_pred             hhhhhhhccChhhhcc------cCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCC
Confidence            4567999999998744      356778999999999999999999988742 3332222 2222211 111111110  


Q ss_pred             -----hhccC---h----HHHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 006559          563 -----ELIMD---K----EMEEEMRALLQVALLCLAPLPKDRPNMSIVH  599 (640)
Q Consensus       563 -----~~~~~---~----~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~  599 (640)
                           .+...   +    .++....-+++++..|++.||++|++-++++
T Consensus       234 ~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll  282 (396)
T KOG0593|consen  234 FFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLL  282 (396)
T ss_pred             ceeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHh
Confidence                 11111   1    1222334678999999999999999998885

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=9.6e-42  Score=352.55  Aligned_cols=248  Identities=23%  Similarity=0.325  Sum_probs=200.5

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ..+.||+|.||+||+|+|.+  .||||.+...    ..-+.|..|+..+++-+|.||+-|+|||..+.. .||..+|++-
T Consensus       396 l~~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~-AIiTqwCeGs  472 (678)
T KOG0193|consen  396 LGERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPPL-AIITQWCEGS  472 (678)
T ss_pred             ccceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCce-eeeehhccCc
Confidence            36789999999999999864  6899999865    234678999999999999999999999997766 9999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC------
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH------  486 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~------  486 (640)
                      +|+.+||..+    ..|+..+.+.||.|||+||.|||.   .+|||||||+.||+|+++++|||.||||+..-.      
T Consensus       473 SLY~hlHv~e----tkfdm~~~idIAqQiaqGM~YLHA---K~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~  545 (678)
T KOG0193|consen  473 SLYTHLHVQE----TKFDMNTTIDIAQQIAQGMDYLHA---KNIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQ  545 (678)
T ss_pred             hhhhhccchh----hhhhHHHHHHHHHHHHHhhhhhhh---hhhhhhhccccceEEccCCcEEEecccceeeeeeecccc
Confidence            9999999764    368999999999999999999995   459999999999999999999999999975421      


Q ss_pred             --CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          487 --TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       487 --~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                        ....+...|||||++++.    ....|+..+||||||||+|||+||..||..+..+.+-|...-+     ....|.. 
T Consensus       546 q~~qp~gsilwmAPEvIRmq----d~nPfS~qSDVYaFGiV~YELltg~lPysi~~~dqIifmVGrG-----~l~pd~s-  615 (678)
T KOG0193|consen  546 QLEQPHGSLLWMAPEVIRMQ----DDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQIIFMVGRG-----YLMPDLS-  615 (678)
T ss_pred             ccCCCccchhhhcHHHHhhc----ccCCCCcccchhhhhHHHHHHHhCcCCcCCCChhheEEEeccc-----ccCccch-
Confidence              122346689999998753    3568899999999999999999999999854433333322111     0111211 


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                         ....++.+++.+++..||..++++||.+.+++..|+++..
T Consensus       616 ---~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~  655 (678)
T KOG0193|consen  616 ---KIRSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLP  655 (678)
T ss_pred             ---hhhccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhh
Confidence               1223555667777788999999999999999999988775

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-41  Score=342.47  Aligned_cols=251  Identities=20%  Similarity=0.368  Sum_probs=198.7

Q ss_pred             hhccccccCcceEEEEE-eCCCcEEEEEEeccc-cchHHH--HHHHHHHhccC-CCcccceeEEEEcCC-eEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVV-LDGGDVVVVKRIRER-KKKREV--DEWLRVIGGLR-HSNIVSIRAYCNGKD-ELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~-~~~~~~--~~e~~~l~~l~-H~niv~l~~~~~~~~-~~~lV~Ey~~  410 (640)
                      ..+.||.|.||.||+|+ ...|..||||+++.+ ...++.  .+|+..|++|+ |||||++.+++.+.+ .+|+|||||+
T Consensus        14 ~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~fVfE~Md   93 (538)
T KOG0661|consen   14 VIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFVFEFMD   93 (538)
T ss_pred             HHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEeeeHHhhh
Confidence            45679999999999998 567899999999877 334443  47899999999 999999999999888 9999999997


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                      . +|+++++...    .+|+...+..|+.||.+||+|+|   +.++.|||+||+|||+.....+||+|||+||....   
T Consensus        94 ~-NLYqLmK~R~----r~fse~~irnim~QilqGL~hiH---k~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~SkpP  165 (538)
T KOG0661|consen   94 C-NLYQLMKDRN----RLFSESDIRNIMYQILQGLAHIH---KHGFFHRDLKPENILISGNDVIKIADFGLAREVRSKPP  165 (538)
T ss_pred             h-hHHHHHhhcC----CcCCHHHHHHHHHHHHHHHHHHH---hcCcccccCChhheEecccceeEecccccccccccCCC
Confidence            6 9999998653    47999999999999999999999   56699999999999999999999999999998753   


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC-Ccc-hHHHHHHhhcccc-cccc---
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG-ELG-IVKWVQMMGQDES-AWEV---  559 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~-~~~-~~~~~~~~~~~~~-~~~~---  559 (640)
                        .++.|.+|+|||++.      ....|+.+.||||+||+++|+++-++-|.+. +.+ +-+..+.++.... .|..   
T Consensus       166 YTeYVSTRWYRAPEvLL------rs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~  239 (538)
T KOG0661|consen  166 YTEYVSTRWYRAPEVLL------RSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYN  239 (538)
T ss_pred             cchhhhcccccchHHhh------hccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHH
Confidence              456699999999974      4566788999999999999999999888742 322 3333444443221 1110   


Q ss_pred             ------cchhhcc----ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          560 ------FDFELIM----DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       560 ------~d~~~~~----~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                            ++.....    ..-+.....+.++++.+|+++||.+|||+.++++.
T Consensus       240 La~~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~~  291 (538)
T KOG0661|consen  240 LASAMNFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQH  291 (538)
T ss_pred             HHHHhccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhcC
Confidence                  0000000    01123355678889999999999999999998763

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.8e-40  Score=336.59  Aligned_cols=248  Identities=23%  Similarity=0.410  Sum_probs=193.9

Q ss_pred             hccccccCcceEEEEE-eCCCcEEEEEEeccccc----hHHHHHHHHHHhccCCCcccceeEEEEcC--CeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVV-LDGGDVVVVKRIRERKK----KREVDEWLRVIGGLRHSNIVSIRAYCNGK--DELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~~~----~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lV~Ey~~  410 (640)
                      .++||+|.||.||+|+ ..+|..||+|+++-...    -.-..+||.+|++|+||||++|.+.....  ..+|||+|||+
T Consensus       122 i~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlVFeYMd  201 (560)
T KOG0600|consen  122 IEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLVFEYMD  201 (560)
T ss_pred             HHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEEEeccc
Confidence            5679999999999999 67899999999986532    24456899999999999999999998876  68999999998


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC--
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP--  488 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~--  488 (640)
                      . ||.-++....    ..|+..++..++.|++.||+|||   ..+|+|||||.+|||||.+|.+||+|||||+++...  
T Consensus       202 h-DL~GLl~~p~----vkft~~qIKc~mkQLl~Gl~~cH---~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~  273 (560)
T KOG0600|consen  202 H-DLSGLLSSPG----VKFTEPQIKCYMKQLLEGLEYCH---SRGVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGS  273 (560)
T ss_pred             c-hhhhhhcCCC----cccChHHHHHHHHHHHHHHHHHh---hcCeeeccccccceEEcCCCCEEeccccceeeccCCCC
Confidence            8 8888876532    46899999999999999999999   456999999999999999999999999999987542  


Q ss_pred             -----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC-Ccc-hHHHHHHhhc-cccccccc
Q 006559          489 -----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG-ELG-IVKWVQMMGQ-DESAWEVF  560 (640)
Q Consensus       489 -----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~-~~~-~~~~~~~~~~-~~~~~~~~  560 (640)
                           .+.|.+|+|||+++++      ..|+.++|+||.||||.||++|++.+.+. +.. +....+.++. .+..|...
T Consensus       274 ~~~T~rVvTLWYRpPELLLG~------t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~  347 (560)
T KOG0600|consen  274 APYTSRVVTLWYRPPELLLGA------TSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPVS  347 (560)
T ss_pred             cccccceEEeeccChHHhcCC------cccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhccccc
Confidence                 3458999999998654      56778999999999999999999998753 222 2223333332 23334432


Q ss_pred             chh--------hccChHHHHH----HHHHHHHHHHccCCCCCCCCCHHHHH
Q 006559          561 DFE--------LIMDKEMEEE----MRALLQVALLCLAPLPKDRPNMSIVH  599 (640)
Q Consensus       561 d~~--------~~~~~~~~~~----~~~l~~l~~~Cl~~~P~~RPs~~~v~  599 (640)
                      +..        ..+...+.+.    ....++++-.+|..||.+|.|+.+++
T Consensus       348 kLP~~~~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL  398 (560)
T KOG0600|consen  348 KLPHATIFKPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSAL  398 (560)
T ss_pred             cCCcccccCCCCcccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHh
Confidence            222        1111112222    23567777778999999999988876

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=7.2e-41  Score=329.77  Aligned_cols=229  Identities=23%  Similarity=0.366  Sum_probs=186.0

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..++||+|+||+||.++. +.++.+|+|.++++     ...+....|..+|.+++||.||++...|++.+.+|||+||+.
T Consensus        29 ~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylVld~~~  108 (357)
T KOG0598|consen   29 ILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLVLDYLN  108 (357)
T ss_pred             eeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEEEeccC
Confidence            357899999999999985 55889999999876     234567789999999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC----
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH----  486 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~----  486 (640)
                      ||.|..+|...+     .++......++.+|+.||.|||   +.+||||||||+|||||++|+++|+||||++..-    
T Consensus       109 GGeLf~hL~~eg-----~F~E~~arfYlaEi~lAL~~LH---~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~~  180 (357)
T KOG0598|consen  109 GGELFYHLQREG-----RFSEDRARFYLAEIVLALGYLH---SKGIIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDGD  180 (357)
T ss_pred             CccHHHHHHhcC-----CcchhHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHeeecCCCcEEEeccccchhcccCCC
Confidence            999999998664     5888888889999999999999   5569999999999999999999999999998642    


Q ss_pred             --CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          487 --TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       487 --~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                        ..+++|..|||||++..       ..|+..+|+||+||++|||++|.+||....  ..++.+...+...        .
T Consensus       181 ~t~tfcGT~eYmAPEil~~-------~gy~~~vDWWsLGillYeML~G~pPF~~~~--~~~~~~~I~~~k~--------~  243 (357)
T KOG0598|consen  181 ATRTFCGTPEYMAPEILLG-------KGYDKAVDWWSLGILLYEMLTGKPPFYAED--VKKMYDKILKGKL--------P  243 (357)
T ss_pred             ccccccCCccccChHHHhc-------CCCCcccchHhHHHHHHHHhhCCCCCcCcc--HHHHHHHHhcCcC--------C
Confidence              34678999999998643       467789999999999999999999997543  3444444333220        1


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCC
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRP  593 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RP  593 (640)
                      ..+.....+.++   +....+..||++|-
T Consensus       244 ~~p~~ls~~ard---ll~~LL~rdp~~RL  269 (357)
T KOG0598|consen  244 LPPGYLSEEARD---LLKKLLKRDPRQRL  269 (357)
T ss_pred             CCCccCCHHHHH---HHHHHhccCHHHhc
Confidence            111223344444   44558899999995

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-41  Score=351.31  Aligned_cols=246  Identities=26%  Similarity=0.394  Sum_probs=195.9

Q ss_pred             hccccccCcceEEEEEeCC--C--cE-EEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          338 AELLGKGCVGATYKVVLDG--G--DV-VVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~--~--~~-vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      .++||+|+||.||+|++..  +  .. ||||..+..     ...+++..|.++|++++|||||+++|++..+..+++|||
T Consensus       162 ~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~ivmE  241 (474)
T KOG0194|consen  162 GKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLMLVME  241 (474)
T ss_pred             cceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccEEEEE
Confidence            3789999999999999643  2  23 899998852     345678999999999999999999999999999999999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      +|++|+|.++|+...+    .++..++++++.+.|+||+|||+   ..+|||||.++|||++.++.+||+|||+++.-..
T Consensus       242 l~~gGsL~~~L~k~~~----~v~~~ek~~~~~~AA~Gl~YLh~---k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~  314 (474)
T KOG0194|consen  242 LCNGGSLDDYLKKNKK----SLPTLEKLRFCYDAARGLEYLHS---KNCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQ  314 (474)
T ss_pred             ecCCCcHHHHHHhCCC----CCCHHHHHHHHHHHHhHHHHHHH---CCCcchhHhHHHheecCCCeEEeCccccccCCcc
Confidence            9999999999997653    48899999999999999999995   4599999999999999999999999999876531


Q ss_pred             ------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCc-chHHHHHHhhcccccccc
Q 006559          488 ------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGEL-GIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       488 ------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~-~~~~~~~~~~~~~~~~~~  559 (640)
                            .......|+|||.       .....|+.++|||||||++||+++ |..||.+-.. ....++....        
T Consensus       315 ~~~~~~~~klPirWLAPEt-------l~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~v~~kI~~~~--------  379 (474)
T KOG0194|consen  315 YVMKKFLKKLPIRWLAPET-------LNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNYEVKAKIVKNG--------  379 (474)
T ss_pred             eeeccccccCcceecChhh-------hccCccccccchhheeeeEEeeeccCCCCCCCCCHHHHHHHHHhcC--------
Confidence                  1112457999994       566689999999999999999999 8889875332 2222221111        


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGS  610 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~  610 (640)
                        .....+...+.   .+..++..||..+|++||+|.++.+.++.+.....
T Consensus       380 --~r~~~~~~~p~---~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~~  425 (474)
T KOG0194|consen  380 --YRMPIPSKTPK---ELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKKKE  425 (474)
T ss_pred             --ccCCCCCCCHH---HHHHHHHHhccCChhhccCHHHHHHHHHHHHhccc
Confidence              11111122233   34555668999999999999999999999886543

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-41  Score=344.96  Aligned_cols=249  Identities=23%  Similarity=0.373  Sum_probs=206.0

Q ss_pred             hccccccCcceEEEEEeCC-CcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          338 AELLGKGCVGATYKVVLDG-GDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      .++||-|-||.||.|.|+. .-.||||.+++. ..-++|..|..+|+.++|||+|+|+|+|..+..+|||.|||..|+|.
T Consensus       272 khKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYIiTEfM~yGNLL  351 (1157)
T KOG4278|consen  272 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYIITEFMCYGNLL  351 (1157)
T ss_pred             eeccCCCcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEEEEecccCccHH
Confidence            4689999999999999865 456999999987 45688999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCccc----
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFI----  491 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~~~----  491 (640)
                      +||++...   ..++--..+.+|.||+.||+||.   +.++|||||.++|+|+.++-.+||+||||++++....+.    
T Consensus       352 dYLRecnr---~ev~avvLlyMAtQIsSaMeYLE---kknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDTYTAHAG  425 (1157)
T KOG4278|consen  352 DYLRECNR---SEVPAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDTYTAHAG  425 (1157)
T ss_pred             HHHHHhch---hhcchhHHHHHHHHHHHHHHHHH---HhhhhhhhhhhhhccccccceEEeeccchhhhhcCCceecccC
Confidence            99997653   34566678899999999999999   566999999999999999999999999999998643322    


Q ss_pred             ---cccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          492 ---NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       492 ---~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                         ...|.|||       ......|+.|+|||+|||+|||+.| |..||.+-+...+  ...+...        .++.  
T Consensus       426 AKFPIKWTAPE-------sLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidlSqV--Y~LLEkg--------yRM~--  486 (1157)
T KOG4278|consen  426 AKFPIKWTAPE-------SLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQV--YGLLEKG--------YRMD--  486 (1157)
T ss_pred             ccCcccccCcc-------cccccccccchhhHHHHHHHHHHHhcCCCCCCCccHHHH--HHHHhcc--------cccc--
Confidence               44688888       5667788999999999999999999 8889875332211  1111111        1111  


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCCCC
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSID  612 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~~~  612 (640)
                       ..+.|..+++++|+.||+++|.+||+++|+++.++.+....++.
T Consensus       487 -~PeGCPpkVYeLMraCW~WsPsDRPsFaeiHqafEtmf~~sSis  530 (1157)
T KOG4278|consen  487 -GPEGCPPKVYELMRACWNWSPSDRPSFAEIHQAFETMFSSSSIS  530 (1157)
T ss_pred             -CCCCCCHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhcccccc
Confidence             22356678999999999999999999999999999988776654

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-41  Score=344.27  Aligned_cols=237  Identities=24%  Similarity=0.407  Sum_probs=191.9

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHHh
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSL  417 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~~  417 (640)
                      .+-||.|+.|.||+|+++ ++.||||++++-     -+.+|+-|++|+||||+.|.|+|....-+|||||||+.|-|+++
T Consensus       129 LeWlGSGaQGAVF~Grl~-netVAVKKV~el-----kETdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~GqL~~V  202 (904)
T KOG4721|consen  129 LEWLGSGAQGAVFLGRLH-NETVAVKKVREL-----KETDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQGQLYEV  202 (904)
T ss_pred             hhhhccCcccceeeeecc-CceehhHHHhhh-----hhhhHHHHHhccCcceeeEeeeecCCceeEEeeeccccccHHHH
Confidence            356999999999999987 477899987643     23467889999999999999999999999999999999999999


Q ss_pred             hccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----Ccccc
Q 006559          418 LHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----PFFIN  492 (640)
Q Consensus       418 l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----~~~~~  492 (640)
                      |+..+     ++.-.....+..+||.||.|||.+   +|||||||+-||||..+..+||+|||.++.+..     .+.+|
T Consensus       203 Lka~~-----~itp~llv~Wsk~IA~GM~YLH~h---KIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~STkMSFaGT  274 (904)
T KOG4721|consen  203 LKAGR-----PITPSLLVDWSKGIAGGMNYLHLH---KIIHRDLKSPNILISYDDVVKISDFGTSKELSDKSTKMSFAGT  274 (904)
T ss_pred             HhccC-----ccCHHHHHHHHHHhhhhhHHHHHh---hHhhhccCCCceEeeccceEEeccccchHhhhhhhhhhhhhhh
Confidence            98654     577788889999999999999954   499999999999999999999999999887643     46789


Q ss_pred             ccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHH
Q 006559          493 DAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEE  572 (640)
Q Consensus       493 ~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  572 (640)
                      ..|||||++.       ....++|+||||||||||||+||..||.+.+...+-|-..  .       .-..+.++   +.
T Consensus       275 VaWMAPEvIr-------nePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAIIwGVG--s-------NsL~LpvP---st  335 (904)
T KOG4721|consen  275 VAWMAPEVIR-------NEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAIIWGVG--S-------NSLHLPVP---ST  335 (904)
T ss_pred             HhhhCHHHhh-------cCCcccccceehhHHHHHHHHhcCCCccccchheeEEecc--C-------CcccccCc---cc
Confidence            9999999754       4556689999999999999999999997654333333111  0       01112222   34


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          573 EMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       573 ~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                      ++.-+.-++.+||+..|..||++++++..|+-...
T Consensus       336 cP~GfklL~Kqcw~sKpRNRPSFrqil~HldIa~p  370 (904)
T KOG4721|consen  336 CPDGFKLLLKQCWNSKPRNRPSFRQILLHLDIASP  370 (904)
T ss_pred             CchHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCH
Confidence            45556666778999999999999999988865433

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=9e-40  Score=306.69  Aligned_cols=251  Identities=23%  Similarity=0.400  Sum_probs=197.6

Q ss_pred             hhccccccCcceEEEEE-eCCCcEEEEEEeccccc----hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          337 SAELLGKGCVGATYKVV-LDGGDVVVVKRIRERKK----KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~~~----~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ..+++|+|.||.||+|+ ..+|+.||||+++....    .....+|+..|+.++|+||+.+.++|...+.+-||+|||+.
T Consensus         6 ~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfEfm~t   85 (318)
T KOG0659|consen    6 KLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFEFMPT   85 (318)
T ss_pred             hhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEEeccc
Confidence            35679999999999999 56799999999987633    34567899999999999999999999999999999999986


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc--
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF--  489 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~--  489 (640)
                       +|...++...    ..+...++..++.++.+||+|||.   ..|+||||||.|+|++++|.+||+|||+++.+.++.  
T Consensus        86 -dLe~vIkd~~----i~l~pa~iK~y~~m~LkGl~y~H~---~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~  157 (318)
T KOG0659|consen   86 -DLEVVIKDKN----IILSPADIKSYMLMTLKGLAYCHS---KWILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRI  157 (318)
T ss_pred             -cHHHHhcccc----cccCHHHHHHHHHHHHHHHHHHHh---hhhhcccCCccceEEcCCCcEEeecccchhccCCCCcc
Confidence             9999998654    468889999999999999999995   459999999999999999999999999999987532  


Q ss_pred             ----cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCC-CCcchH-HHHHHhhcc-ccccc----
Q 006559          490 ----FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD-GELGIV-KWVQMMGQD-ESAWE----  558 (640)
Q Consensus       490 ----~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~-~~~~~~-~~~~~~~~~-~~~~~----  558 (640)
                          +.|.+|+|||++.      ..+.|+..+||||.||++.||+-|.+-|.+ .+.+.. ...+.++.. +..|.    
T Consensus       158 ~~~~V~TRWYRAPELLf------Gsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LGTP~~~~WP~~~~  231 (318)
T KOG0659|consen  158 QTHQVVTRWYRAPELLF------GSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALGTPTPDQWPEMTS  231 (318)
T ss_pred             cccceeeeeccChHHhc------cchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcCCCCcccCccccc
Confidence                4588999999974      456788899999999999999998876653 222222 223333321 22221    


Q ss_pred             ccchhh-------ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          559 VFDFEL-------IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       559 ~~d~~~-------~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                      .-|...       ....-...+..++++++..++..||.+|++++|++++
T Consensus       232 lpdY~~~~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~  281 (318)
T KOG0659|consen  232 LPDYVKIQQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQALKH  281 (318)
T ss_pred             cccHHHHhcCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHhcc
Confidence            111110       0000122344567899999999999999999998753

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-40  Score=337.72  Aligned_cols=249  Identities=22%  Similarity=0.355  Sum_probs=200.6

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      ..+.||+|-||.|.++...++..||||.++..   ..+++|.+|+++|.+++|||||.++|+|..++.+++|+|||++|+
T Consensus       542 ~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYmEnGD  621 (807)
T KOG1094|consen  542 FKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYMENGD  621 (807)
T ss_pred             hhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHHhcCc
Confidence            35789999999999999999999999999976   345789999999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-Cc---
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-PF---  489 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-~~---  489 (640)
                      |.+|+..+..+   .+.-...++|+.|||.||+||.+.+   +|||||.++|||+|.++++||+|||+++.+.. ++   
T Consensus       622 LnqFl~aheap---t~~t~~~vsi~tqiasgmaYLes~n---fVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~v  695 (807)
T KOG1094|consen  622 LNQFLSAHELP---TAETAPGVSICTQIASGMAYLESLN---FVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRV  695 (807)
T ss_pred             HHHHHHhccCc---ccccchhHHHHHHHHHHHHHHHhhc---hhhccccccceeecCcccEEecCcccccccccCCceee
Confidence            99999877532   2345667889999999999999665   99999999999999999999999999986543 22   


Q ss_pred             ----cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh--CCCCCCCCC-cchHHHHHHhhcccccccccch
Q 006559          490 ----FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT--GKMAKGDGE-LGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       490 ----~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t--g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                          +....|||+|       .+.-+++|+++|||+|||++||+++  .+.||.+-. ...++-...+..+....     
T Consensus       696 qgr~vlpiRwmawE-------sillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven~~~~~~~~~~~-----  763 (807)
T KOG1094|consen  696 QGRAVLPIRWMAWE-------SILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGRQ-----  763 (807)
T ss_pred             ecceeeeeeehhHH-------HHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHhhhhhcCCCCcc-----
Confidence                2246799999       4566789999999999999999987  678887422 12222222222211111     


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                        .......-+...+++++++||..+-++||++++++..|++.
T Consensus       764 --~~l~~P~~cp~~lyelml~Cw~~es~~RPsFe~lh~~lq~~  804 (807)
T KOG1094|consen  764 --VVLSRPPACPQGLYELMLRCWRRESEQRPSFEQLHLFLQED  804 (807)
T ss_pred             --eeccCCCcCcHHHHHHHHHHhchhhhcCCCHHHHHHHHHHh
Confidence              01111234566788999999999999999999999999874

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=2e-39  Score=340.61  Aligned_cols=250  Identities=21%  Similarity=0.378  Sum_probs=190.7

Q ss_pred             hhccccccCcceEEEEEe------CCCcEEEEEEecccc---chHHHHHHHHHHhcc-CCCcccceeEEEEcC-CeEEEE
Q 006559          337 SAELLGKGCVGATYKVVL------DGGDVVVVKRIRERK---KKREVDEWLRVIGGL-RHSNIVSIRAYCNGK-DELFLV  405 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~------~~~~~vavK~l~~~~---~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~-~~~~lV  405 (640)
                      ..++||+|+||.||+|..      ..+..||||.++...   ..+.+..|++++.++ +||||++++++|... +..++|
T Consensus        11 ~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv   90 (338)
T cd05102          11 LGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNGPLMVI   90 (338)
T ss_pred             eeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCCceEEE
Confidence            357899999999999974      234679999997542   234577899999999 899999999998764 468999


Q ss_pred             EeccCCCCHHHhhccCCCC---------------------------------------------------------CCCC
Q 006559          406 YDYLPHGSLHSLLHGSRGP---------------------------------------------------------GRMP  428 (640)
Q Consensus       406 ~Ey~~~gsL~~~l~~~~~~---------------------------------------------------------~~~~  428 (640)
                      |||+++|+|.+++......                                                         ...+
T Consensus        91 ~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (338)
T cd05102          91 VEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSP  170 (338)
T ss_pred             EecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccccccCC
Confidence            9999999999998753210                                                         0135


Q ss_pred             cCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC--------ccccccccCCcc
Q 006559          429 VDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP--------FFINDAYNAPEL  500 (640)
Q Consensus       429 l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~--------~~~~~~y~aPE~  500 (640)
                      +++..+..++.|+++||+|||+   .+|+||||||+|||++.++.+||+|||+++.....        ...+..|+|||+
T Consensus       171 l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~  247 (338)
T cd05102         171 LTMEDLICYSFQVARGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPES  247 (338)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH---CCEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcHH
Confidence            7888999999999999999994   56999999999999999999999999999764321        122467999996


Q ss_pred             ccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHHHHHHHHH
Q 006559          501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQ  579 (640)
Q Consensus       501 ~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~  579 (640)
                      +       ....++.++|||||||++|||+| |+.||....... ...+....... .     .  .+   ......+.+
T Consensus       248 ~-------~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~-~~~~~~~~~~~-~-----~--~~---~~~~~~l~~  308 (338)
T cd05102         248 I-------FDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINE-EFCQRLKDGTR-M-----R--AP---ENATPEIYR  308 (338)
T ss_pred             h-------hcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccH-HHHHHHhcCCC-C-----C--CC---CCCCHHHHH
Confidence            4       34557789999999999999997 999997533221 11111111100 0     0  01   112335778


Q ss_pred             HHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          580 VALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       580 l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ++.+||+.||++|||+.|++++|+++..+
T Consensus       309 li~~cl~~dp~~RPs~~el~~~l~~~~~~  337 (338)
T cd05102         309 IMLACWQGDPKERPTFSALVEILGDLLQE  337 (338)
T ss_pred             HHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence            88899999999999999999999997653

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=3.6e-39  Score=329.75  Aligned_cols=244  Identities=18%  Similarity=0.264  Sum_probs=192.5

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEecccc-c----hHHHHHHHHHHhccCCCcccceeEEEEc----CCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERK-K----KREVDEWLRVIGGLRHSNIVSIRAYCNG----KDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~-~----~~~~~~e~~~l~~l~H~niv~l~~~~~~----~~~~~lV~Ey  408 (640)
                      ...||+|++|.||+|.+ +|+.||||.++... .    .+.+.+|++++++++|||||+++|++.+    ....++||||
T Consensus        25 ~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey  103 (283)
T PHA02988         25 SVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEY  103 (283)
T ss_pred             CeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEe
Confidence            45799999999999998 57899999987542 1    2556789999999999999999999876    3478999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP  488 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~  488 (640)
                      +++|+|.+++....     .++|....+++.|++.||.|||..  .+++||||||+|||+++++.+||+|||+++.....
T Consensus       104 ~~~g~L~~~l~~~~-----~~~~~~~~~i~~~i~~~l~~lH~~--~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~  176 (283)
T PHA02988        104 CTRGYLREVLDKEK-----DLSFKTKLDMAIDCCKGLYNLYKY--TNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSP  176 (283)
T ss_pred             CCCCcHHHHHhhCC-----CCChhHHHHHHHHHHHHHHHHHhc--CCCCCCcCChhhEEECCCCcEEEcccchHhhhccc
Confidence            99999999997643     578999999999999999999953  25789999999999999999999999998865432


Q ss_pred             ---ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          489 ---FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       489 ---~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                         ..++..|+|||++.+     ....++.++|||||||++|||+||+.||.....  ............       ...
T Consensus       177 ~~~~~~~~~y~aPE~~~~-----~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~--~~~~~~i~~~~~-------~~~  242 (283)
T PHA02988        177 PFKNVNFMVYFSYKMLND-----IFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTT--KEIYDLIINKNN-------SLK  242 (283)
T ss_pred             cccccCcccccCHHHhhh-----ccccccchhhhhHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHhcCC-------CCC
Confidence               345778999997532     124678999999999999999999999975322  222222211110       001


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                      .+.   .....+.+++.+||+.||++|||+.|+++.|+.+.
T Consensus       243 ~~~---~~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~~  280 (283)
T PHA02988        243 LPL---DCPLEIKCIVEACTSHDSIKRPNIKEILYNLSLYK  280 (283)
T ss_pred             CCC---cCcHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHH
Confidence            111   12334667788899999999999999999999875

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-39  Score=325.30  Aligned_cols=244  Identities=23%  Similarity=0.391  Sum_probs=189.0

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc--chHHHHHHHHHHhccCCCcccceeEEEEcCC--eEEEEEeccCC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK--KKREVDEWLRVIGGLRHSNIVSIRAYCNGKD--ELFLVYDYLPH  411 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~--~~~lV~Ey~~~  411 (640)
                      ..+.||+|+||.||++... +|...|||.+....  ..+.+++|+++|.+++|||||+++|......  .+++.|||+++
T Consensus        21 ~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mEy~~~  100 (313)
T KOG0198|consen   21 KGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFMEYAPG  100 (313)
T ss_pred             hhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeeeccCC
Confidence            4678999999999999965 48999999987552  1456889999999999999999999855444  69999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC-CCCeEEccCCcccccCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ-LGNACISDIGVHQLFHT---  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~-~~~~kl~DfGl~~~~~~---  487 (640)
                      |+|.+++...++    .++...+.+++.||++||+|||+   .+||||||||+|||++. ++.+||+|||+++....   
T Consensus       101 GsL~~~~~~~g~----~l~E~~v~~ytr~iL~GL~ylHs---~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~  173 (313)
T KOG0198|consen  101 GSLSDLIKRYGG----KLPEPLVRRYTRQILEGLAYLHS---KGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGT  173 (313)
T ss_pred             CcHHHHHHHcCC----CCCHHHHHHHHHHHHHHHHHHHh---CCEeccCcccceEEEeCCCCeEEeccCccccccccccc
Confidence            999999987652    48899999999999999999994   55999999999999999 79999999999876542   


Q ss_pred             ------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccc
Q 006559          488 ------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFD  561 (640)
Q Consensus       488 ------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  561 (640)
                            ...+|+.|||||+...      ......++||||+||++.||+||+.||.+. .....++-........     
T Consensus       174 ~~~~~~~~~Gtp~~maPEvi~~------g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~-~~~~~~~~~ig~~~~~-----  241 (313)
T KOG0198|consen  174 KSDSELSVQGTPNYMAPEVIRN------GEVARRESDIWSLGCTVVEMLTGKPPWSEF-FEEAEALLLIGREDSL-----  241 (313)
T ss_pred             cccccccccCCccccCchhhcC------CCcCCccchhhhcCCEEEeccCCCCcchhh-cchHHHHHHHhccCCC-----
Confidence                  3456899999997632      112225899999999999999999999753 2223332222222111     


Q ss_pred             hhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 006559          562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIED  604 (640)
Q Consensus       562 ~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~  604 (640)
                      +  ..+...+++   ..+++..|++.+|++|||+.++++.---
T Consensus       242 P--~ip~~ls~~---a~~Fl~~C~~~~p~~Rpta~eLL~hpf~  279 (313)
T KOG0198|consen  242 P--EIPDSLSDE---AKDFLRKCFKRDPEKRPTAEELLEHPFL  279 (313)
T ss_pred             C--CCCcccCHH---HHHHHHHHhhcCcccCcCHHHHhhChhh
Confidence            1  112223343   4455666999999999999999765433

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-39  Score=331.83  Aligned_cols=235  Identities=21%  Similarity=0.344  Sum_probs=188.7

Q ss_pred             hhccccccCcceEEEEE-eCCCcEEEEEEeccc-----cchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVV-LDGGDVVVVKRIRER-----KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      +.+.||+|+|++||+|+ ...+.++|||++.++     +..+-+..|-..|.+| .||.||+|+..|++...+|+|+||+
T Consensus        77 Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLYFvLe~A  156 (604)
T KOG0592|consen   77 FGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESLYFVLEYA  156 (604)
T ss_pred             hhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccceEEEEEec
Confidence            47889999999999999 456889999998765     2234456677778888 8999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC---
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH---  486 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~---  486 (640)
                      ++|+|.+++++.+     .|+......++.+|..||+|||+   .+||||||||+|||||+||++||.|||-++.+.   
T Consensus       157 ~nGdll~~i~K~G-----sfde~caR~YAAeIldAleylH~---~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~  228 (604)
T KOG0592|consen  157 PNGDLLDLIKKYG-----SFDETCARFYAAEILDALEYLHS---NGIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQ  228 (604)
T ss_pred             CCCcHHHHHHHhC-----cchHHHHHHHHHHHHHHHHHHHh---cCceeccCChhheeEcCCCcEEEeeccccccCChhh
Confidence            9999999999775     58888888999999999999994   559999999999999999999999999988763   


Q ss_pred             ----------------CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHh
Q 006559          487 ----------------TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMM  550 (640)
Q Consensus       487 ----------------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~  550 (640)
                                      ..+++|..|.+||++       .....+..+|+|+|||+||+|+.|++||.+....+. +    
T Consensus       229 ~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL-------~~~~~~~~sDiWAlGCilyQmlaG~PPFra~Neyli-F----  296 (604)
T KOG0592|consen  229 KSQENPVDPNQASSRRSSFVGTAEYVSPELL-------NDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYLI-F----  296 (604)
T ss_pred             ccccCccCcccccCcccceeeeecccCHHHh-------cCCCCCcccchHHHHHHHHHHhcCCCCCccccHHHH-H----
Confidence                            125679999999975       344566789999999999999999999975321111 1    


Q ss_pred             hcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          551 GQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       551 ~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                            .+|.+.....++..++.   +.+++.+.+..||.+|++.+++.+
T Consensus       297 ------qkI~~l~y~fp~~fp~~---a~dLv~KLLv~dp~~Rlt~~qIk~  337 (604)
T KOG0592|consen  297 ------QKIQALDYEFPEGFPED---ARDLIKKLLVRDPSDRLTSQQIKA  337 (604)
T ss_pred             ------HHHHHhcccCCCCCCHH---HHHHHHHHHccCccccccHHHHhh
Confidence                  12233333333333444   344555578899999999988864

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-38  Score=318.14  Aligned_cols=249  Identities=20%  Similarity=0.316  Sum_probs=193.6

Q ss_pred             hhccccccCcceEEEEE-eCCCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          337 SAELLGKGCVGATYKVV-LDGGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ..++||.|..++||+|+ .+.++.||||++.-.+   .-.++.+|+..++.++||||++++..|..+..+|+||.||.+|
T Consensus        30 L~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmpfMa~G  109 (516)
T KOG0582|consen   30 LQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMPFMAGG  109 (516)
T ss_pred             EEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeehhhcCC
Confidence            35789999999999999 5678999999997552   2366788999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC------
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH------  486 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~------  486 (640)
                      ++.++++..-..   -+++..+..|.+++.+||.|||   ..+.||||||+.||||+.+|.+||+|||.+..+.      
T Consensus       110 S~ldIik~~~~~---Gl~E~~Ia~iLre~LkaL~YLH---~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~  183 (516)
T KOG0582|consen  110 SLLDIIKTYYPD---GLEEASIATILREVLKALDYLH---QNGHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQ  183 (516)
T ss_pred             cHHHHHHHHccc---cccHHHHHHHHHHHHHHHHHHH---hcCceecccccccEEEcCCCcEEEcCceeeeeecccCcee
Confidence            999999865432   3788889999999999999999   5569999999999999999999999999754432      


Q ss_pred             ----CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccch
Q 006559          487 ----TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       487 ----~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                          ..+.+++.|||||+++.     ....|+.|+||||||++..||++|..||......-+-..+.........    .
T Consensus       184 ~~rf~tfvgtp~wmAPEvl~q-----~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl~tLqn~pp~~~----t  254 (516)
T KOG0582|consen  184 VTRFNTFVGTPCWMAPEVLMQ-----QLHGYDFKADIWSFGITACELAHGHAPFSKYPPMKVLLLTLQNDPPTLL----T  254 (516)
T ss_pred             eEeeccccCcccccChHHhhh-----cccCccchhhhhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCCCCcc----c
Confidence                34567999999998743     3356789999999999999999999999753322111111111111110    0


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .....++.....+.+.+++..|+..||++|||++++++
T Consensus       255 ~~~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlk  292 (516)
T KOG0582|consen  255 SGLDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLK  292 (516)
T ss_pred             ccCChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence            01111122233345667777799999999999999873

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-38  Score=320.73  Aligned_cols=263  Identities=25%  Similarity=0.355  Sum_probs=195.6

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHh--ccCCCcccceeEEEEcCC----eEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIG--GLRHSNIVSIRAYCNGKD----ELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~--~l~H~niv~l~~~~~~~~----~~~lV~Ey~~  410 (640)
                      ..++||+|+||.||||++.+ +.||||++... .++.+..|-++.+  .++|+||++|+++-....    +++||+||.+
T Consensus       214 l~eli~~Grfg~V~KaqL~~-~~VAVKifp~~-~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh~  291 (534)
T KOG3653|consen  214 LLELIGRGRFGCVWKAQLDN-RLVAVKIFPEQ-EKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTEFHP  291 (534)
T ss_pred             hHHHhhcCccceeehhhccC-ceeEEEecCHH-HHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEeeecc
Confidence            35689999999999999875 89999998754 3344555555444  679999999999876555    8999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcC------CCCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY------NKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~------~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      +|+|.+||..+      .++|....+|+..+++||+|||+.      .+++|+|||||++|||+.+|+++.|+|||+|..
T Consensus       292 kGsL~dyL~~n------tisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~  365 (534)
T KOG3653|consen  292 KGSLCDYLKAN------TISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALR  365 (534)
T ss_pred             CCcHHHHHHhc------cccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEE
Confidence            99999999876      589999999999999999999964      357899999999999999999999999999987


Q ss_pred             cCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCC--CCCcchHHHHHHhhccc
Q 006559          485 FHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKG--DGELGIVKWVQMMGQDE  554 (640)
Q Consensus       485 ~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~--~~~~~~~~~~~~~~~~~  554 (640)
                      +...        .++|.+|||||++.++..... ...-.+.||||+|.|||||+++-..++  ........+-..++..+
T Consensus       366 ~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d-~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hP  444 (534)
T KOG3653|consen  366 LEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQD-RDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHP  444 (534)
T ss_pred             ecCCCCCcchhhhhhhhhhcCHHHHhhhccccc-HHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCC
Confidence            7532        367999999999987755432 333357999999999999999764332  11111112222222222


Q ss_pred             cccccc--------chhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          555 SAWEVF--------DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       555 ~~~~~~--------d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ...++-        .+.+...=.....+.-+.+.+-.||..||+.|-|+.=|.+.+.++..-
T Consensus       445 t~e~mq~~VV~kK~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~~~  506 (534)
T KOG3653|consen  445 TLEEMQELVVRKKQRPKIPDAWRKHAGMAVLCETIEECWDHDAEARLTAGCVEERMAELMML  506 (534)
T ss_pred             CHHHHHHHHHhhccCCCChhhhhcCccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHhcc
Confidence            111110        011100000013355677788889999999999999999999887754

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.5e-39  Score=330.37  Aligned_cols=236  Identities=21%  Similarity=0.328  Sum_probs=191.4

Q ss_pred             hccccccCcceEEEEE-eCCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVV-LDGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      -+.||+|+.|.||.++ ...++.||||++...  ..++-+..|+.+|+..+|+|||.+++.|.-.+++|.|||||++|+|
T Consensus       278 ~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym~ggsL  357 (550)
T KOG0578|consen  278 FKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYMEGGSL  357 (550)
T ss_pred             hhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeecCCCch
Confidence            3579999999999998 567889999999765  3344577999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------C
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------P  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------~  488 (640)
                      .+.+...      .+++.++..|++++++||+|||   ..+|+|||||.+|||++.+|.+||+|||++..+..      .
T Consensus       358 TDvVt~~------~~~E~qIA~Icre~l~aL~fLH---~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~KR~T  428 (550)
T KOG0578|consen  358 TDVVTKT------RMTEGQIAAICREILQGLKFLH---ARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSKRST  428 (550)
T ss_pred             hhhhhcc------cccHHHHHHHHHHHHHHHHHHH---hcceeeeccccceeEeccCCcEEEeeeeeeeccccccCcccc
Confidence            9999765      3889999999999999999999   45599999999999999999999999999877643      3


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      .++|+.|||||+       .....|++|.||||||++++||+-|++||-.+.--.+-|+-...        -.+++...+
T Consensus       429 mVGTPYWMAPEV-------vtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~PlrAlyLIa~n--------g~P~lk~~~  493 (550)
T KOG0578|consen  429 MVGTPYWMAPEV-------VTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATN--------GTPKLKNPE  493 (550)
T ss_pred             ccCCCCccchhh-------hhhcccCccccchhhhhHHHHHhcCCCCccCCChHHHHHHHhhc--------CCCCcCCcc
Confidence            567999999996       45667889999999999999999999999743221121211111        112222223


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .++.+   +.++..+|+..||++||++.|+++
T Consensus       494 klS~~---~kdFL~~cL~~dv~~RasA~eLL~  522 (550)
T KOG0578|consen  494 KLSPE---LKDFLDRCLVVDVEQRASAKELLE  522 (550)
T ss_pred             ccCHH---HHHHHHHHhhcchhcCCCHHHHhc
Confidence            33333   445556699999999999999975

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=6.4e-38  Score=324.10  Aligned_cols=250  Identities=22%  Similarity=0.341  Sum_probs=187.8

Q ss_pred             hccccccCcceEEEEEeCC-----------------CcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEE
Q 006559          338 AELLGKGCVGATYKVVLDG-----------------GDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCN  397 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-----------------~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~  397 (640)
                      .+.||+|+||.||+|..++                 +..||+|.+....   ...++.+|++++.+++||||+++++++.
T Consensus        10 ~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~   89 (304)
T cd05096          10 KEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRLLGVCV   89 (304)
T ss_pred             eeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEe
Confidence            5679999999999997532                 3369999987642   2456888999999999999999999999


Q ss_pred             cCCeEEEEEeccCCCCHHHhhccCCC--------------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCC
Q 006559          398 GKDELFLVYDYLPHGSLHSLLHGSRG--------------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSS  463 (640)
Q Consensus       398 ~~~~~~lV~Ey~~~gsL~~~l~~~~~--------------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~  463 (640)
                      ..+..++||||+++|+|.+++.....              .....++|..+.+++.|++.||+|||+   .+|+||||||
T Consensus        90 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~---~~ivH~dlkp  166 (304)
T cd05096          90 DEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSS---LNFVHRDLAT  166 (304)
T ss_pred             cCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH---CCccccCcch
Confidence            99999999999999999999864321              011247888999999999999999995   4599999999


Q ss_pred             CCeEECCCCCeEEccCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh--CC
Q 006559          464 SNIVVDQLGNACISDIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT--GK  533 (640)
Q Consensus       464 ~NILl~~~~~~kl~DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t--g~  533 (640)
                      +|||++.++.+||+|||+++.....        ...+..|+|||++       ....++.++|||||||++|||++  +.
T Consensus       167 ~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Dv~slG~~l~el~~~~~~  239 (304)
T cd05096         167 RNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECI-------LMGKFTTASDVWAFGVTLWEILMLCKE  239 (304)
T ss_pred             hheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHH-------hcCCCCchhhhHHHHHHHHHHHHccCC
Confidence            9999999999999999998765321        1225679999964       33457789999999999999987  55


Q ss_pred             CCCCCCC-cchHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 006559          534 MAKGDGE-LGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIED  604 (640)
Q Consensus       534 ~p~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~  604 (640)
                      .||.... ......+.......... ..   ...+   ..+...+.+++.+||+.+|++||||.+|++.|++
T Consensus       240 ~p~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~---~~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l~~  304 (304)
T cd05096         240 QPYGELTDEQVIENAGEFFRDQGRQ-VY---LFRP---PPCPQGLYELMLQCWSRDCRERPSFSDIHAFLTE  304 (304)
T ss_pred             CCCCcCCHHHHHHHHHHHhhhcccc-cc---ccCC---CCCCHHHHHHHHHHccCCchhCcCHHHHHHHHhC
Confidence            6776421 11222221111110000 00   0000   1223457788899999999999999999998863

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-38  Score=342.94  Aligned_cols=250  Identities=20%  Similarity=0.255  Sum_probs=202.0

Q ss_pred             HhhccccccCcceEEEEEeCCC-cEEEEEEeccc--cchHHHHHHHHHHhccC-CCcccceeEE-EEc------CCeEEE
Q 006559          336 SSAELLGKGCVGATYKVVLDGG-DVVVVKRIRER--KKKREVDEWLRVIGGLR-HSNIVSIRAY-CNG------KDELFL  404 (640)
Q Consensus       336 ~~~~~iG~G~fg~Vy~~~~~~~-~~vavK~l~~~--~~~~~~~~e~~~l~~l~-H~niv~l~~~-~~~------~~~~~l  404 (640)
                      ...++|.+|||+.||.|....+ ..+|+|++-..  ..-+.+.+|+++|++|+ |+|||.+++. ...      .-+++|
T Consensus        40 ~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~Evll  119 (738)
T KOG1989|consen   40 TVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEVLL  119 (738)
T ss_pred             EEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEEEe
Confidence            3467899999999999997665 99999998654  34567889999999998 9999999993 221      237899


Q ss_pred             EEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          405 VYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      .||||++|.|-+++......   .|+..++++|+.|+|+|+++||.. +++|||||||-+||||..++..||||||-+..
T Consensus       120 LmEyC~gg~Lvd~mn~Rlq~---~lte~eVLkIf~dv~~AVa~mH~~-~pPiIHRDLKiENvLls~~g~~KLCDFGSatt  195 (738)
T KOG1989|consen  120 LMEYCKGGSLVDFMNTRLQT---RLTEDEVLKIFYDVCEAVAAMHYL-KPPIIHRDLKIENVLLSADGNYKLCDFGSATT  195 (738)
T ss_pred             ehhhccCCcHHHHHHHHHhc---cCChHHHHHHHHHHHHHHHHHhcC-CCccchhhhhhhheEEcCCCCEEeCccccccc
Confidence            99999999999998754321   389999999999999999999976 68899999999999999999999999997653


Q ss_pred             cCC---------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHH
Q 006559          485 FHT---------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQM  549 (640)
Q Consensus       485 ~~~---------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~  549 (640)
                      --.               ..+.|+.|++||++.    .+....+++|+||||+||+||.|+..+.||++.+         
T Consensus       196 ~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMID----lysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg---------  262 (738)
T KOG1989|consen  196 KILSPTSAQEVNYVEEEIEKYTTPQYRSPEMID----LYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESG---------  262 (738)
T ss_pred             ccCCCccHHHHHHHHHHHHhhCCccccChHHHh----hhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCc---------
Confidence            210               124588999999863    4667789999999999999999999999997542         


Q ss_pred             hhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 006559          550 MGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG  609 (640)
Q Consensus       550 ~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~  609 (640)
                            ...|++.....++. +.....+.+|+..||+++|.+||++-+|+..+-++..+.
T Consensus       263 ------~laIlng~Y~~P~~-p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~~~  315 (738)
T KOG1989|consen  263 ------KLAILNGNYSFPPF-PNYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELANKP  315 (738)
T ss_pred             ------ceeEEeccccCCCC-ccHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHhcCC
Confidence                  12344444333321 344455667777899999999999999999999987653

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.3e-38  Score=328.16  Aligned_cols=243  Identities=21%  Similarity=0.297  Sum_probs=192.3

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc-------cchHHHHHHHHHHhccC-CCcccceeEEEEcCCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER-------KKKREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-------~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      .+.||+|.||+||.|+. ..+..||+|.+..+       ...+.+.+|+.+++.++ ||||+++++++......|+||||
T Consensus        22 ~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~~~ivmEy  101 (370)
T KOG0583|consen   22 GRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTKIYIVMEY  101 (370)
T ss_pred             eeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCeEEEEEEe
Confidence            56799999999999974 56799999976653       12345667999999999 99999999999999999999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC-CCeEEccCCcccccC-
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL-GNACISDIGVHQLFH-  486 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~-~~~kl~DfGl~~~~~-  486 (640)
                      +.+|+|.+++....     ++.+....+++.|++.|++|||+   .+|+||||||+|||+|.+ +++||+|||++.... 
T Consensus       102 ~~gGdL~~~i~~~g-----~l~E~~ar~~F~Qlisav~y~H~---~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~~  173 (370)
T KOG0583|consen  102 CSGGDLFDYIVNKG-----RLKEDEARKYFRQLISAVAYCHS---RGIVHRDLKPENILLDGNEGNLKLSDFGLSAISPG  173 (370)
T ss_pred             cCCccHHHHHHHcC-----CCChHHHHHHHHHHHHHHHHHHh---CCEeeCCCCHHHEEecCCCCCEEEeccccccccCC
Confidence            99999999998733     57788999999999999999994   559999999999999999 999999999998772 


Q ss_pred             -----CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccc
Q 006559          487 -----TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFD  561 (640)
Q Consensus       487 -----~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  561 (640)
                           ...++++.|+|||++.+.+.     ....++||||+||+||.|++|+.||++........  .         +..
T Consensus       174 ~~~~l~t~cGsp~Y~aPEvl~~~~~-----Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~~l~~--k---------i~~  237 (370)
T KOG0583|consen  174 EDGLLKTFCGSPAYAAPEVLSGKGT-----YSGKAADVWSLGVILYVLLCGRLPFDDSNVPNLYR--K---------IRK  237 (370)
T ss_pred             CCCcccCCCCCcccCCHHHhCCCCC-----cCCchhhhhhhHHHHHHHHhCCCCCCCccHHHHHH--H---------Hhc
Confidence                 24578999999998754431     11468999999999999999999998633221111  1         111


Q ss_pred             hhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       562 ~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                      .+...+....  ..++..++.+|+..+|.+|+++.++. .-..++.
T Consensus       238 ~~~~~p~~~~--S~~~~~Li~~mL~~~P~~R~t~~~i~-~h~w~~~  280 (370)
T KOG0583|consen  238 GEFKIPSYLL--SPEARSLIEKMLVPDPSTRITLLEIL-EHPWFQK  280 (370)
T ss_pred             CCccCCCCcC--CHHHHHHHHHHcCCCcccCCCHHHHh-hChhhcc
Confidence            1111222221  33466677789999999999999998 5555554

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=6.2e-38  Score=333.40  Aligned_cols=247  Identities=22%  Similarity=0.345  Sum_probs=189.4

Q ss_pred             hhccccccCcceEEEEEe------CCCcEEEEEEecccc---chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEE
Q 006559          337 SAELLGKGCVGATYKVVL------DGGDVVVVKRIRERK---KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVY  406 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~------~~~~~vavK~l~~~~---~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~  406 (640)
                      ..+.||+|+||.||+|+.      ..+..||||+++...   ..+.+.+|++++..+ +||||++++++|...+..++||
T Consensus        39 ~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~~~lv~  118 (375)
T cd05104          39 FGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGPTLVIT  118 (375)
T ss_pred             hhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCcceeee
Confidence            467899999999999973      235579999987542   234577899999999 8999999999999999999999


Q ss_pred             eccCCCCHHHhhccCCCC--------------------------------------------------------------
Q 006559          407 DYLPHGSLHSLLHGSRGP--------------------------------------------------------------  424 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~--------------------------------------------------------------  424 (640)
                      |||++|+|.++++.....                                                              
T Consensus       119 E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (375)
T cd05104         119 EYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSYIDQD  198 (375)
T ss_pred             hhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccceecccc
Confidence            999999999998653210                                                              


Q ss_pred             --------CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC--------
Q 006559          425 --------GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP--------  488 (640)
Q Consensus       425 --------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~--------  488 (640)
                              ....++|..+.+++.||++||+|||+   .+|+||||||+|||++.++.+||+|||+++.....        
T Consensus       199 ~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~  275 (375)
T cd05104         199 VTSEILEEDELALDTEDLLSFSYQVAKGMSFLAS---KNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGN  275 (375)
T ss_pred             cHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCchhhEEEECCCcEEEecCccceeccCcccccccCC
Confidence                    11257899999999999999999994   56999999999999999999999999998765321        


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      ...+..|+|||++       ....++.++|||||||++|||+| |+.||....... .+.+........   .     .+
T Consensus       276 ~~~~~~y~aPE~~-------~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~-~~~~~~~~~~~~---~-----~~  339 (375)
T cd05104         276 ARLPVKWMAPESI-------FNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDS-KFYKMIKEGYRM---L-----SP  339 (375)
T ss_pred             CCCCcceeChhHh-------cCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchH-HHHHHHHhCccC---C-----CC
Confidence            1124569999964       33457789999999999999998 888886432111 111111111000   0     00


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                      .   ....++.+++..||+.||++||+|.+|+++|++.
T Consensus       340 ~---~~~~~l~~li~~cl~~dP~~RPs~~eil~~l~~~  374 (375)
T cd05104         340 E---CAPSEMYDIMKSCWDADPLKRPTFKQIVQLIEQQ  374 (375)
T ss_pred             C---CCCHHHHHHHHHHccCChhHCcCHHHHHHHHHhh
Confidence            0   1123567788889999999999999999999863

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=6.4e-38  Score=317.64  Aligned_cols=242  Identities=21%  Similarity=0.284  Sum_probs=190.2

Q ss_pred             hhccccccCcceEEEEEeC----CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLD----GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~----~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ..+.||+|+||.||+|.+.    .+..||+|.++...   ..+.+.+|+..+++++||||+++++++...+..++||||+
T Consensus         9 ~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   88 (266)
T cd05064           9 IERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIVTEYM   88 (266)
T ss_pred             EeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEEEEeC
Confidence            3578999999999999853    35679999988652   2346788999999999999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-  488 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-  488 (640)
                      ++|+|.+++....    ..++|..++.++.|++.||+|||   +.+++||||||+|||++.++.+|++|||........ 
T Consensus        89 ~~~~L~~~l~~~~----~~l~~~~~~~~~~~i~~al~~lH---~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~  161 (266)
T cd05064          89 SNGALDSFLRKHE----GQLVAGQLMGMLPGLASGMKYLS---EMGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEA  161 (266)
T ss_pred             CCCcHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHH---HCCEeeccccHhhEEEcCCCcEEECCCcccccccccc
Confidence            9999999997543    25889999999999999999999   456999999999999999999999999987654221 


Q ss_pred             ------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccc
Q 006559          489 ------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFD  561 (640)
Q Consensus       489 ------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  561 (640)
                            ...+..|+|||++       ....++.++|||||||++||+++ |+.||.....  ....+.......      
T Consensus       162 ~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~--~~~~~~~~~~~~------  226 (266)
T cd05064         162 IYTTMSGKSPVLWAAPEAI-------QYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSG--QDVIKAVEDGFR------  226 (266)
T ss_pred             hhcccCCCCceeecCHHHH-------hhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCH--HHHHHHHHCCCC------
Confidence                  1224579999964       34567789999999999999875 9999974321  112222211100      


Q ss_pred             hhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       562 ~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                        ....   ......+.+++..||+.+|++||++.++.+.|+++
T Consensus       227 --~~~~---~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         227 --LPAP---RNCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             --CCCC---CCCCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence              0011   12334577788899999999999999999998765

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=4.8e-38  Score=303.61  Aligned_cols=259  Identities=23%  Similarity=0.381  Sum_probs=196.5

Q ss_pred             CccChHHHHHHhhccccccCcceEEEEEe-CCCcEEEEEEeccccchH----HHHHHHHHHhccCCCcccceeEEEEc--
Q 006559          326 GFRNVGDLLKSSAELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKR----EVDEWLRVIGGLRHSNIVSIRAYCNG--  398 (640)
Q Consensus       326 ~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~----~~~~e~~~l~~l~H~niv~l~~~~~~--  398 (640)
                      ..+++++..+  .+.|++|.||.||+|+. +++++||+|+++-.+.+.    -..+||.+|.+.+|||||.+..+...  
T Consensus        71 gCrsv~efe~--lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~  148 (419)
T KOG0663|consen   71 GCRSVEEFEK--LNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSN  148 (419)
T ss_pred             CcccHHHHHH--HhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccc
Confidence            3446665543  57899999999999994 568899999998664332    24689999999999999999988765  


Q ss_pred             CCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEcc
Q 006559          399 KDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISD  478 (640)
Q Consensus       399 ~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~D  478 (640)
                      -+..|||||||+. +|..++..-.    .++...+...+..|+.+|++|||+.   .|+|||||++|+|+.+.|.+||+|
T Consensus       149 ~d~iy~VMe~~Eh-DLksl~d~m~----q~F~~~evK~L~~QlL~glk~lH~~---wilHRDLK~SNLLm~~~G~lKiaD  220 (419)
T KOG0663|consen  149 MDKIYIVMEYVEH-DLKSLMETMK----QPFLPGEVKTLMLQLLRGLKHLHDN---WILHRDLKTSNLLLSHKGILKIAD  220 (419)
T ss_pred             cceeeeeHHHHHh-hHHHHHHhcc----CCCchHHHHHHHHHHHHHHHHHhhc---eeEecccchhheeeccCCcEEecc
Confidence            3679999999987 9999998654    3688889999999999999999954   599999999999999999999999


Q ss_pred             CCcccccCCC------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCC-CCcc-hHHHHHHh
Q 006559          479 IGVHQLFHTP------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD-GELG-IVKWVQMM  550 (640)
Q Consensus       479 fGl~~~~~~~------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~-~~~~-~~~~~~~~  550 (640)
                      ||+|+.++.+      .+.|.+|+|||++.++      ..|++..||||+|||+.||+++++-|.+ .+.+ +....+.+
T Consensus       221 FGLAR~ygsp~k~~T~lVVTLWYRaPELLLG~------~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~ll  294 (419)
T KOG0663|consen  221 FGLAREYGSPLKPYTPLVVTLWYRAPELLLGA------KTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFKLL  294 (419)
T ss_pred             cchhhhhcCCcccCcceEEEeeecCHHHhcCC------cccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHh
Confidence            9999998765      3458999999998554      5567899999999999999999988874 2333 33334444


Q ss_pred             hc-ccccccccchhh-------ccCh--HHH----H--HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          551 GQ-DESAWEVFDFEL-------IMDK--EME----E--EMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       551 ~~-~~~~~~~~d~~~-------~~~~--~~~----~--~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      +. .+..|.-++.-.       ...+  ...    .  -...-.++....+..||++|-|+.|.++
T Consensus       295 GtPte~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~  360 (419)
T KOG0663|consen  295 GTPSEAIWPGYSELPAVKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLK  360 (419)
T ss_pred             CCCccccCCCccccchhhccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHHhhc
Confidence            42 233333221110       0000  000    0  1134456667789999999999998864

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=4.1e-38  Score=321.82  Aligned_cols=233  Identities=21%  Similarity=0.330  Sum_probs=188.9

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccc-cch---HHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRER-KKK---REVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-~~~---~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ..+.||+|.||.||||+.+ +.+.||+|.+.+. +..   +.+.+|++++++++|||||.++++|+...++|+|.||+.+
T Consensus         6 v~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte~a~g   85 (808)
T KOG0597|consen    6 VYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTEYAVG   85 (808)
T ss_pred             HHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEehhhhh
Confidence            3567999999999999954 5788999998765 222   4578899999999999999999999999999999999976


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                       +|+.+|....     .++++.+..++.++..||.|||+   .+|+|||+||.|||++..|.+|+||||+++.+..    
T Consensus        86 -~L~~il~~d~-----~lpEe~v~~~a~~LVsaL~yLhs---~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~v  156 (808)
T KOG0597|consen   86 -DLFTILEQDG-----KLPEEQVRAIAYDLVSALYYLHS---NRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNTSV  156 (808)
T ss_pred             -hHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHHh---cCcccccCCcceeeecCCCceeechhhhhhhcccCcee
Confidence             9999998654     58899999999999999999995   5599999999999999999999999999998754    


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                        ...+|+-|||||+..       .+.|+..+|.||+||++||+++|++||...  .+.+.++.+..++..+        
T Consensus       157 ltsikGtPlYmAPElv~-------e~pyd~~sDlWslGcilYE~~~G~PPF~a~--si~~Lv~~I~~d~v~~--------  219 (808)
T KOG0597|consen  157 LTSIKGTPLYMAPELVE-------EQPYDHTSDLWSLGCILYELYVGQPPFYAR--SITQLVKSILKDPVKP--------  219 (808)
T ss_pred             eeeccCcccccCHHHHc-------CCCccchhhHHHHHHHHHHHhcCCCCchHH--HHHHHHHHHhcCCCCC--------
Confidence              345699999999754       455667899999999999999999999743  2333444444332221        


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVH  599 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~  599 (640)
                       +.   +....+..+....+.+||.+|-+-.+++
T Consensus       220 -p~---~~S~~f~nfl~gLL~kdP~~RltW~~Ll  249 (808)
T KOG0597|consen  220 -PS---TASSSFVNFLQGLLIKDPAQRLTWTDLL  249 (808)
T ss_pred             -cc---cccHHHHHHHHHHhhcChhhcccHHHHh
Confidence             11   2223345555567899999999988775

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=5.7e-38  Score=323.49  Aligned_cols=254  Identities=22%  Similarity=0.361  Sum_probs=203.8

Q ss_pred             hHHHHHHhhccccccCcceEEEEEeCC---Cc--EEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCe
Q 006559          330 VGDLLKSSAELLGKGCVGATYKVVLDG---GD--VVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDE  401 (640)
Q Consensus       330 ~~~~~~~~~~~iG~G~fg~Vy~~~~~~---~~--~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~  401 (640)
                      +...+....+.||.|-||.||+|.+.+   |.  -||||.-+..   ...+.|.+|.-+|++++|||||+|.|+|. ...
T Consensus       386 l~Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~-e~P  464 (974)
T KOG4257|consen  386 LRRELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCV-EQP  464 (974)
T ss_pred             eehhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeee-ccc
Confidence            334444567899999999999999644   22  3889988765   34667999999999999999999999998 457


Q ss_pred             EEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCc
Q 006559          402 LFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV  481 (640)
Q Consensus       402 ~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl  481 (640)
                      .|||||.++-|.|.+||+..+.    .++......++.||+.||+|||+.   ++|||||.++|||+.....+|++|||+
T Consensus       465 ~WivmEL~~~GELr~yLq~nk~----sL~l~tL~ly~~Qi~talaYLeSk---rfVHRDIAaRNiLVsSp~CVKLaDFGL  537 (974)
T KOG4257|consen  465 MWIVMELAPLGELREYLQQNKD----SLPLRTLTLYCYQICTALAYLESK---RFVHRDIAARNILVSSPQCVKLADFGL  537 (974)
T ss_pred             eeEEEecccchhHHHHHHhccc----cchHHHHHHHHHHHHHHHHHHHhh---chhhhhhhhhheeecCcceeeecccch
Confidence            9999999999999999987652    578888999999999999999954   499999999999999999999999999


Q ss_pred             ccccCCCccc-------cccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcc
Q 006559          482 HQLFHTPFFI-------NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQD  553 (640)
Q Consensus       482 ~~~~~~~~~~-------~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~  553 (640)
                      ++.+....+.       ...|||||       +...++||.+||||-|||.+||++. |..||.+-....+     ...-
T Consensus       538 SR~~ed~~yYkaS~~kLPIKWmaPE-------SINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsDV-----I~~i  605 (974)
T KOG4257|consen  538 SRYLEDDAYYKASRGKLPIKWMAPE-------SINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSDV-----IGHI  605 (974)
T ss_pred             hhhccccchhhccccccceeecCcc-------ccchhcccchhhHHHHHHHHHHHHHhcCCccccccccce-----EEEe
Confidence            9987653221       34677777       7888999999999999999999987 9999974221111     0000


Q ss_pred             cccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCCC
Q 006559          554 ESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSI  611 (640)
Q Consensus       554 ~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~~  611 (640)
                      +     ...++.   ..+.|+..++.++.+||+.+|.+||.+.++...|.++..+.+.
T Consensus       606 E-----nGeRlP---~P~nCPp~LYslmskcWayeP~kRPrftei~~~lsdv~qeek~  655 (974)
T KOG4257|consen  606 E-----NGERLP---CPPNCPPALYSLMSKCWAYEPSKRPRFTEIKAILSDVLQEEKI  655 (974)
T ss_pred             c-----CCCCCC---CCCCCChHHHHHHHHHhccCcccCCcHHHHHHHHHHHHHHhhh
Confidence            0     011222   2246777899999999999999999999999999998775443

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=2.9e-38  Score=318.81  Aligned_cols=239  Identities=28%  Similarity=0.515  Sum_probs=182.5

Q ss_pred             hccccccCcceEEEEEeC-----CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVLD-----GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-----~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .+.||.|.||.||+|.+.     .+..|+||.++...   ..+++.+|++.+++++||||++++|+|...+..++||||+
T Consensus         4 ~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~~   83 (259)
T PF07714_consen    4 IKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEYC   83 (259)
T ss_dssp             EEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE--
T ss_pred             eeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeeccccccccccccccccccccccccccccccccc
Confidence            467999999999999977     24579999996542   2467889999999999999999999999888899999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--  487 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--  487 (640)
                      ++|+|.++|+...   ...+++..+..|+.|||+||+|||+.   +++|+||+++||+++.++.+||+|||+++....  
T Consensus        84 ~~g~L~~~L~~~~---~~~~~~~~~~~i~~~i~~~l~~Lh~~---~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~  157 (259)
T PF07714_consen   84 PGGSLDDYLKSKN---KEPLSEQQRLSIAIQIAEALSYLHSN---NIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKS  157 (259)
T ss_dssp             TTEBHHHHHHHTC---TTTSBHHHHHHHHHHHHHHHHHHHHT---TEEEST-SGGGEEEETTTEEEEESTTTGEETTTSS
T ss_pred             ccccccccccccc---cccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccc
Confidence            9999999998762   23589999999999999999999954   599999999999999999999999999887621  


Q ss_pred             ------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhccccccccc
Q 006559          488 ------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVF  560 (640)
Q Consensus       488 ------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  560 (640)
                            .......|+|||.+       ....++.++||||||+++|||+| |+.|+.+.  ....+..........    
T Consensus       158 ~~~~~~~~~~~~~~~aPE~~-------~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~--~~~~~~~~~~~~~~~----  224 (259)
T PF07714_consen  158 KYKNDSSQQLPLRYLAPEVL-------KDGEYTKKSDVYSFGMLLYEILTLGKFPFSDY--DNEEIIEKLKQGQRL----  224 (259)
T ss_dssp             SEEESTTSESGGGGS-HHHH-------HHSEESHHHHHHHHHHHHHHHHTTSSGTTTTS--CHHHHHHHHHTTEET----
T ss_pred             cccccccccccccccccccc-------cccccccccccccccccccccccccccccccc--ccccccccccccccc----
Confidence                  12235679999964       34457889999999999999999 67888643  223333333221110    


Q ss_pred             chhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 006559          561 DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMI  602 (640)
Q Consensus       561 d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L  602 (640)
                          ..+   ......+.+++..||+.+|++||+|.++++.|
T Consensus       225 ----~~~---~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  225 ----PIP---DNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             ----TSB---TTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             ----eec---cchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence                001   11233466788889999999999999999876

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=9.5e-38  Score=331.71  Aligned_cols=248  Identities=21%  Similarity=0.342  Sum_probs=189.4

Q ss_pred             hhccccccCcceEEEEEeC------CCcEEEEEEecccc---chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEE
Q 006559          337 SAELLGKGCVGATYKVVLD------GGDVVVVKRIRERK---KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVY  406 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~------~~~~vavK~l~~~~---~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~  406 (640)
                      ..+.||+|+||.||+|+..      ++..||||+++...   ....+.+|+++++.+ +|+|||+++++|...+..++||
T Consensus        42 ~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~~~lv~  121 (374)
T cd05106          42 FGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGPVLVIT  121 (374)
T ss_pred             ehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCCeEEeH
Confidence            4678999999999998742      23579999997542   234577899999999 8999999999999999999999


Q ss_pred             eccCCCCHHHhhccCCC---------------------------------------------------------------
Q 006559          407 DYLPHGSLHSLLHGSRG---------------------------------------------------------------  423 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~---------------------------------------------------------------  423 (640)
                      ||+++|+|.++++....                                                               
T Consensus       122 ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (374)
T cd05106         122 EYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDSKDEE  201 (374)
T ss_pred             hhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCccccccccccccchh
Confidence            99999999999864310                                                               


Q ss_pred             --CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC--------ccccc
Q 006559          424 --PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP--------FFIND  493 (640)
Q Consensus       424 --~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~--------~~~~~  493 (640)
                        ....++++....+++.|++.||+|||+   .+|+||||||+|||+++++.+||+|||+++.....        ...+.
T Consensus       202 ~~~~~~~l~~~~~~~i~~qi~~aL~yLH~---~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~  278 (374)
T cd05106         202 DTEDSWPLDLDDLLRFSSQVAQGMDFLAS---KNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPV  278 (374)
T ss_pred             ccCCCCCcCHHHHHHHHHHHHHHHHHHHH---CCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCcc
Confidence              011257889999999999999999994   56999999999999999999999999998765321        11235


Q ss_pred             cccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHH
Q 006559          494 AYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEE  572 (640)
Q Consensus       494 ~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  572 (640)
                      .|+|||++       ....++.++|||||||++|||++ |+.||....... .+.+......   ...     ....   
T Consensus       279 ~y~aPE~~-------~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~-~~~~~~~~~~---~~~-----~~~~---  339 (374)
T cd05106         279 KWMAPESI-------FDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNS-KFYKMVKRGY---QMS-----RPDF---  339 (374)
T ss_pred             ceeCHHHh-------cCCCCCccccHHHHHHHHHHHHhCCCCCCccccccH-HHHHHHHccc---Ccc-----CCCC---
Confidence            69999964       33457789999999999999998 999997532211 1111111100   000     0001   


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          573 EMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       573 ~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                      ...++.+++.+||+.||++||++.+|+++|+++.
T Consensus       340 ~~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~~  373 (374)
T cd05106         340 APPEIYSIMKMCWNLEPTERPTFSQISQLIQRQL  373 (374)
T ss_pred             CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHh
Confidence            1235677888899999999999999999999864

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=2.8e-37  Score=311.02  Aligned_cols=238  Identities=23%  Similarity=0.392  Sum_probs=189.9

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHH
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~  416 (640)
                      .+.||+|+||.||++.+.++..+|+|.+... ....++..|++++++++||||+++++++...+..++||||+++|+|.+
T Consensus         9 ~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~~   88 (256)
T cd05114           9 MKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLN   88 (256)
T ss_pred             eeEecCCcCceEEEEEeccCceEEEEecccCCccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCCCCcHHH
Confidence            4579999999999999988888999988754 345678889999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-------c
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-------F  489 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-------~  489 (640)
                      +++...+    .++|..+..++.|++.||+|||   ..+|+||||||+||++++++.+||+|||+++.....       .
T Consensus        89 ~~~~~~~----~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~~  161 (256)
T cd05114          89 YLRQRQG----KLSKDMLLSMCQDVCEGMEYLE---RNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGA  161 (256)
T ss_pred             HHHhCcc----CCCHHHHHHHHHHHHHHHHHHH---HCCccccccCcceEEEcCCCeEEECCCCCccccCCCceeccCCC
Confidence            9875432    4789999999999999999999   456999999999999999999999999998764321       1


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..+..|+|||+.       ....++.++|||||||++|||+| |+.||.....  .+.+.........   ..+.     
T Consensus       162 ~~~~~y~aPE~~-------~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~--~~~~~~i~~~~~~---~~~~-----  224 (256)
T cd05114         162 KFPVKWSPPEVF-------NFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSN--YEVVEMISRGFRL---YRPK-----  224 (256)
T ss_pred             CCchhhCChhhc-------ccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCH--HHHHHHHHCCCCC---CCCC-----
Confidence            224579999964       33456789999999999999999 8999864321  1112222111110   0111     


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMI  602 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L  602 (640)
                         .....+.+++.+||+.+|++||+|.++++.|
T Consensus       225 ---~~~~~~~~li~~c~~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         225 ---LASMTVYEVMYSCWHEKPEGRPTFAELLRAI  255 (256)
T ss_pred             ---CCCHHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence               1123577888999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=5e-38  Score=327.56  Aligned_cols=235  Identities=22%  Similarity=0.364  Sum_probs=191.4

Q ss_pred             hccccccCcceEEEEE-eCCCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVV-LDGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ++.||+|+-|.|-.|+ ..+|+.+|||.+...     .....+++|+.+|+-+.||||++++++++++.++|+|.||+++
T Consensus        17 gkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlEyv~g   96 (786)
T KOG0588|consen   17 GKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLEYVPG   96 (786)
T ss_pred             cccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEEecCC
Confidence            5679999999999998 467999999999765     1234578999999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC-----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----  486 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~-----  486 (640)
                      |.|++++-.++     ++...+..+++.||..|+.|+|+.+   |+||||||+|+|||..+.+||+|||+|..-.     
T Consensus        97 GELFdylv~kG-----~l~e~eaa~ff~QIi~gv~yCH~~~---icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gklL  168 (786)
T KOG0588|consen   97 GELFDYLVRKG-----PLPEREAAHFFRQILDGVSYCHAFN---ICHRDLKPENLLLDVKNNIKIADFGMASLEVPGKLL  168 (786)
T ss_pred             chhHHHHHhhC-----CCCCHHHHHHHHHHHHHHHHHhhhc---ceeccCCchhhhhhcccCEeeeccceeecccCCccc
Confidence            99999998664     5888899999999999999999655   9999999999999999999999999997643     


Q ss_pred             CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          487 TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       487 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                      ...++++.|.+||+..+.++.      +.++||||.|||||.|+||+.||+++...  .....+.+         ....+
T Consensus       169 eTSCGSPHYA~PEIV~G~pYd------G~~sDVWSCGVILfALLtG~LPFdDdNir--~LLlKV~~---------G~f~M  231 (786)
T KOG0588|consen  169 ETSCGSPHYAAPEIVSGRPYD------GRPSDVWSCGVILFALLTGKLPFDDDNIR--VLLLKVQR---------GVFEM  231 (786)
T ss_pred             cccCCCcccCCchhhcCCCCC------CCccccchhHHHHHHHHhCCCCCCCccHH--HHHHHHHc---------CcccC
Confidence            346789999999998766554      35899999999999999999999864322  11111111         11112


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      +..+..   +.-+++.+|+..||++|.|++||.+
T Consensus       232 Ps~Is~---eaQdLLr~ml~VDp~~RiT~~eI~k  262 (786)
T KOG0588|consen  232 PSNISS---EAQDLLRRMLDVDPSTRITTEEILK  262 (786)
T ss_pred             CCcCCH---HHHHHHHHHhccCccccccHHHHhh
Confidence            222233   3445666799999999999999976

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=1.1e-37  Score=325.07  Aligned_cols=233  Identities=20%  Similarity=0.297  Sum_probs=183.8

Q ss_pred             ccccccCcceEEEEEe-CCCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          339 ELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ++||+|+||.||+++. .+|+.||+|.++...     ....+.+|++++++++||||+++.+++...+..|+||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            3699999999999985 468899999987541     1234667899999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      +|.+++....     .+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....     
T Consensus        81 ~L~~~l~~~~-----~~~~~~~~~~~~qi~~~L~~lH~---~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~  152 (323)
T cd05571          81 ELFFHLSRER-----VFSEDRARFYGAEIVSALGYLHS---CDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATM  152 (323)
T ss_pred             cHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCcc
Confidence            9999987543     57899999999999999999995   4599999999999999999999999999875321     


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                       ...++..|+|||++       ....++.++|||||||++|||+||+.||.......  .........         ...
T Consensus       153 ~~~~gt~~y~aPE~~-------~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~--~~~~~~~~~---------~~~  214 (323)
T cd05571         153 KTFCGTPEYLAPEVL-------EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK--LFELILMEE---------IRF  214 (323)
T ss_pred             cceecCccccChhhh-------cCCCCCccccCcccchhhhhhhcCCCCCCCCCHHH--HHHHHHcCC---------CCC
Confidence             23468899999965       33456789999999999999999999997533211  111111110         001


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRP-----NMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RP-----s~~~v~~  600 (640)
                      +...   ..++.+++.+||+.||++||     ++.++++
T Consensus       215 p~~~---~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~  250 (323)
T cd05571         215 PRTL---SPEAKSLLAGLLKKDPKQRLGGGPEDAKEIME  250 (323)
T ss_pred             CCCC---CHHHHHHHHHHccCCHHHcCCCCCCCHHHHHc
Confidence            1112   23456677789999999999     7888764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.4e-38  Score=311.26  Aligned_cols=258  Identities=21%  Similarity=0.334  Sum_probs=191.9

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcCC-----eEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKD-----ELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~-----~~~lV~Ey~~~  411 (640)
                      .+++|.|+||.||+|++. .++.||||+......  .-..|+.+|++++|||||+|..+|....     ...+||||||.
T Consensus        29 ~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r--~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVleymP~  106 (364)
T KOG0658|consen   29 VRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR--YKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLEYMPE  106 (364)
T ss_pred             eEEEeecccceEEEEEEcCCCceeEEEEecCCCC--cCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHHhchH
Confidence            568999999999999964 468899999875532  2346788999999999999998886532     24589999997


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC-CCeEEccCCcccccCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL-GNACISDIGVHQLFHT---  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~-~~~kl~DfGl~~~~~~---  487 (640)
                       +|.++++.... ....++...+.-+..|+.+||.|||+   .+|+||||||.|+|+|.+ |.+||||||-|+.+..   
T Consensus       107 -tL~~~~r~~~~-~~~~mp~~~iKLYt~Qlfrgl~yLh~---~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~ep  181 (364)
T KOG0658|consen  107 -TLYRVIRHYTR-ANQRMPLLEIKLYTYQLFRGLAYLHS---HGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEP  181 (364)
T ss_pred             -HHHHHHHHHhh-cCCCCceeeeHHHHHHHHHHHHHHHh---cCcccCCCChheEEEcCCCCeEEeccCCcceeeccCCC
Confidence             99998874211 11235556677799999999999995   569999999999999966 9999999999998743   


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC--cchHHHHHHhhccccc--c----
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGE--LGIVKWVQMMGQDESA--W----  557 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~--~~~~~~~~~~~~~~~~--~----  557 (640)
                        .+..|..|+|||++.+      ...|+.+.||||.|||+.||+-|++-|.++.  ..++..++.++....-  .    
T Consensus       182 niSYicSRyYRaPELifg------a~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~  255 (364)
T KOG0658|consen  182 NISYICSRYYRAPELIFG------ATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMNP  255 (364)
T ss_pred             ceeEEEeccccCHHHHcC------ccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcCc
Confidence              3455889999999754      4567789999999999999999999887533  2355566666543211  0    


Q ss_pred             ---cccchhhccCh----HHHHHHHHHHHHHHHccCCCCCCCCCHHHHH--HHHHHhhcc
Q 006559          558 ---EVFDFELIMDK----EMEEEMRALLQVALLCLAPLPKDRPNMSIVH--RMIEDIRTK  608 (640)
Q Consensus       558 ---~~~d~~~~~~~----~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~--~~L~~i~~~  608 (640)
                         +...+.+....    .......+.++++.+++..+|.+|.++.|++  ....+++..
T Consensus       256 ~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h~fFdelr~~  315 (364)
T KOG0658|consen  256 NYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALAHPFFDELRDP  315 (364)
T ss_pred             ccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhcchhhHHhhCc
Confidence               01111111111    1123345788899999999999999999886  356666654

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=4.2e-37  Score=310.50  Aligned_cols=241  Identities=22%  Similarity=0.365  Sum_probs=192.3

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHH
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~  416 (640)
                      .+.||+|+||.||+|...++..||+|.+... ...+.+.+|+.++++++|+||+++++++...+..++||||+++|+|.+
T Consensus        11 ~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~   90 (261)
T cd05072          11 VKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMAKGSLLD   90 (261)
T ss_pred             eeecCCcCCceEEEEEecCCceEEEEEccCCchhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecCCCCcHHH
Confidence            5679999999999999888889999998754 335678889999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-------c
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-------F  489 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-------~  489 (640)
                      +++....   ..+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||+|||+++.....       .
T Consensus        91 ~l~~~~~---~~~~~~~~~~~~~~l~~~l~~LH~---~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~  164 (261)
T cd05072          91 FLKSDEG---GKVLLPKLIDFSAQIAEGMAYIER---KNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGA  164 (261)
T ss_pred             HHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccchhhEEecCCCcEEECCCccceecCCCceeccCCC
Confidence            9975432   257888999999999999999994   56999999999999999999999999999765431       1


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCc-chHHHHHHhhcccccccccchhhccC
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGEL-GIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      ..+..|+|||..       ....++.++|||||||++|||+| |+.||..... ....++....         ...  ..
T Consensus       165 ~~~~~y~aPE~~-------~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~---------~~~--~~  226 (261)
T cd05072         165 KFPIKWTAPEAI-------NFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQRGY---------RMP--RM  226 (261)
T ss_pred             ccceecCCHHHh-------ccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHHHHHHHHHcCC---------CCC--CC
Confidence            224579999964       33456789999999999999999 9999964321 1121111100         000  00


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                         .....++.+++.+||+.+|++||++.++.+.|+++
T Consensus       227 ---~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  261 (261)
T cd05072         227 ---ENCPDELYDIMKTCWKEKAEERPTFDYLQSVLDDF  261 (261)
T ss_pred             ---CCCCHHHHHHHHHHccCCcccCcCHHHHHHHHhcC
Confidence               11223567788899999999999999999999863

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=3.5e-37  Score=320.39  Aligned_cols=246  Identities=20%  Similarity=0.312  Sum_probs=191.2

Q ss_pred             hhccccccCcceEEEEEeC-CCc----EEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          337 SAELLGKGCVGATYKVVLD-GGD----VVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~----~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      ..+.||+|+||.||+|++. ++.    .||+|.++..   ...+++.+|+.+++.++||||++++|+|... ..++|+||
T Consensus        11 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~~v~e~   89 (316)
T cd05108          11 KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQLITQL   89 (316)
T ss_pred             eeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-Cceeeeec
Confidence            3567999999999999853 333    3899998754   2345678899999999999999999999764 67899999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP  488 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~  488 (640)
                      +++|+|.+++....    ..+++..++.++.||+.||+|||+   .+|+||||||+|||+++++.+||+|||+++.....
T Consensus        90 ~~~g~l~~~l~~~~----~~~~~~~~~~~~~qi~~~L~~LH~---~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~  162 (316)
T cd05108          90 MPFGCLLDYVREHK----DNIGSQYLLNWCVQIAKGMNYLEE---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAD  162 (316)
T ss_pred             CCCCCHHHHHHhcc----ccCCHHHHHHHHHHHHHHHHHHHh---cCeeccccchhheEecCCCcEEEccccccccccCC
Confidence            99999999998643    247889999999999999999995   45999999999999999999999999999876421


Q ss_pred             --------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccc
Q 006559          489 --------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       489 --------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  559 (640)
                              ...+..|+|||++       ....++.++|||||||++|||+| |+.||.+....  ++.+........   
T Consensus       163 ~~~~~~~~~~~~~~y~apE~~-------~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~--~~~~~~~~~~~~---  230 (316)
T cd05108         163 EKEYHAEGGKVPIKWMALESI-------LHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EISSILEKGERL---  230 (316)
T ss_pred             CcceeccCCccceeecChHHh-------ccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHH--HHHHHHhCCCCC---
Confidence                    1124579999964       34567789999999999999998 99999753221  121111111100   


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGS  610 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~  610 (640)
                           ..+   ..+..++.+++..||+.+|++||++.+++..+.++..+..
T Consensus       231 -----~~~---~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~~~~  273 (316)
T cd05108         231 -----PQP---PICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQ  273 (316)
T ss_pred             -----CCC---CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHcCCc
Confidence                 000   1122356778889999999999999999999999876654

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=5.8e-37  Score=311.09  Aligned_cols=251  Identities=22%  Similarity=0.314  Sum_probs=184.1

Q ss_pred             cccccCcceEEEEEeCC---CcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          340 LLGKGCVGATYKVVLDG---GDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~~---~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .||+|+||.||+|...+   +..+|+|.++...   ....+.+|+.++++++||||+++++++.+....++||||+++|+
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05087           2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGD   81 (269)
T ss_pred             cccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCCc
Confidence            58999999999998654   3468999887542   23467789999999999999999999999899999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-----
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-----  488 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-----  488 (640)
                      |.++++..........++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||+|||+++.....     
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~  158 (269)
T cd05087          82 LKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHK---NNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVT  158 (269)
T ss_pred             HHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHH---CCEeccccCcceEEEcCCCcEEECCccccccccCcceeec
Confidence            9999975432223356778888999999999999994   55999999999999999999999999998654321     


Q ss_pred             ---ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcc-hHHHHHHhhcccccccccchh
Q 006559          489 ---FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELG-IVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       489 ---~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~  563 (640)
                         ..++..|+|||++...........++.++|||||||++|||++ |+.||...... ...+.   .. .......++.
T Consensus       159 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~---~~-~~~~~~~~~~  234 (269)
T cd05087         159 PDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLTYT---VR-EQQLKLPKPR  234 (269)
T ss_pred             CCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHHHHHHH---hh-cccCCCCCCc
Confidence               2235679999976422111112346789999999999999997 99999643211 11111   00 0011111111


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIE  603 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~  603 (640)
                      +..  ...+   .+.+++..|| .+|++|||+.||++.|+
T Consensus       235 ~~~--~~~~---~~~~l~~~c~-~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         235 LKL--PLSD---RWYEVMQFCW-LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             cCC--CCCh---HHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence            111  1112   3455667798 57999999999998874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=4.3e-37  Score=314.85  Aligned_cols=238  Identities=19%  Similarity=0.248  Sum_probs=184.9

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||++.. .+++.||||.+....     ....+.+|++++++++|+||+++.+++...+..++||||+++
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~   84 (285)
T cd05631           5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTIMNG   84 (285)
T ss_pred             EEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEecCC
Confidence            46799999999999985 578999999986531     223467899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....   ...+++..+..++.|++.||+|||+   .+|+||||||+|||+++++.+||+|||+++....    
T Consensus        85 g~L~~~~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~---~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~~  158 (285)
T cd05631          85 GDLKFHIYNMG---NPGFDEQRAIFYAAELCCGLEDLQR---ERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGETV  158 (285)
T ss_pred             CcHHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCee
Confidence            99998876432   1258899999999999999999994   5699999999999999999999999999876532    


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcch-H-HHHHHhhcccccccccchhh
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGI-V-KWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~-~-~~~~~~~~~~~~~~~~d~~~  564 (640)
                       ...++..|+|||++       ....++.++|||||||++|||++|+.||....... . .......         ....
T Consensus       159 ~~~~g~~~y~aPE~~-------~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~---------~~~~  222 (285)
T cd05631         159 RGRVGTVGYMAPEVI-------NNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRVK---------EDQE  222 (285)
T ss_pred             cCCCCCCCccCHhhh-------cCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHHHhh---------cccc
Confidence             23458899999964       34567889999999999999999999997532211 1 1111100         0000


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPN-----MSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs-----~~~v~~  600 (640)
                      ......   ..++.+++.+||+.||++||+     +.++.+
T Consensus       223 ~~~~~~---s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~  260 (285)
T cd05631         223 EYSEKF---SEDAKSICRMLLTKNPKERLGCRGNGAAGVKQ  260 (285)
T ss_pred             cCCccC---CHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhc
Confidence            111112   234667788899999999997     666654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-37  Score=322.86  Aligned_cols=231  Identities=22%  Similarity=0.296  Sum_probs=181.4

Q ss_pred             ccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          341 LGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       341 iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ||+|+||.||+|+.. ++..||+|.++..     .....+..|+.++++++||||+++++++...+..|+||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            799999999999964 5788999998753     1234566789999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------C
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------P  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------~  488 (640)
                      .+++....     .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....      .
T Consensus        81 ~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~---~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~  152 (312)
T cd05585          81 FHHLQREG-----RFDLSRARFYTAELLCALENLHK---FNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNT  152 (312)
T ss_pred             HHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHeEECCCCcEEEEECcccccCccCCCcccc
Confidence            99997543     47889999999999999999994   5699999999999999999999999999875421      2


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..++..|+|||++       ....++.++|||||||++|||+||+.||.....  .+..+.....         ....+.
T Consensus       153 ~~gt~~y~aPE~~-------~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~--~~~~~~~~~~---------~~~~~~  214 (312)
T cd05585         153 FCGTPEYLAPELL-------LGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENV--NEMYRKILQE---------PLRFPD  214 (312)
T ss_pred             ccCCcccCCHHHH-------cCCCCCCccceechhHHHHHHHhCCCCcCCCCH--HHHHHHHHcC---------CCCCCC
Confidence            3468899999965       344577899999999999999999999975432  2222221111         011111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..+   .++.+++.+||+.||++||++..+.+
T Consensus       215 ~~~---~~~~~li~~~L~~dp~~R~~~~~~~e  243 (312)
T cd05585         215 GFD---RDAKDLLIGLLSRDPTRRLGYNGAQE  243 (312)
T ss_pred             cCC---HHHHHHHHHHcCCCHHHcCCCCCHHH
Confidence            122   34566778899999999986544433

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1e-36  Score=307.71  Aligned_cols=243  Identities=23%  Similarity=0.414  Sum_probs=193.8

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ..+.||+|+||.||+|...++..||+|.++.. ...+++.+|++++++++||||+++++++...+..++||||+++++|.
T Consensus        10 ~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   89 (261)
T cd05068          10 LLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMKYGSLL   89 (261)
T ss_pred             eEEEecccCCccEEEEEecCCeEEEEEeeCCCcccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeecccCCcHH
Confidence            35789999999999999888888999998765 34567889999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCcc-----
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFF-----  490 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~~-----  490 (640)
                      +++....   ...+++..+..++.|++.||.|||   ..+|+||||||+||++++++.+||+|||+++.......     
T Consensus        90 ~~~~~~~---~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~  163 (261)
T cd05068          90 EYLQGGA---GRALKLPQLIDMAAQVASGMAYLE---AQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREG  163 (261)
T ss_pred             HHHhccC---CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCcceEEEcCCCCEEECCcceEEEccCCcccccCC
Confidence            9997543   125789999999999999999999   45699999999999999999999999999887643211     


Q ss_pred             --ccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          491 --INDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       491 --~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                        .+..|+|||+.       ....++.++|||||||++|||+| |+.||......  .-........      .  ....
T Consensus       164 ~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~--~~~~~~~~~~------~--~~~~  226 (261)
T cd05068         164 AKFPIKWTAPEAA-------LYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNA--EVLQQVDQGY------R--MPCP  226 (261)
T ss_pred             CcCceeccCcccc-------ccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHH--HHHHHHHcCC------C--CCCC
Confidence              12469999954       34567789999999999999999 99998643211  1111111100      0  0001


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                         ......+.+++.+|++.+|++||++.++.+.|+++
T Consensus       227 ---~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~~  261 (261)
T cd05068         227 ---PGCPKELYDIMLDCWKEDPDDRPTFETLQWKLEDF  261 (261)
T ss_pred             ---CcCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhcC
Confidence               12234577888999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-37  Score=310.75  Aligned_cols=256  Identities=28%  Similarity=0.378  Sum_probs=189.0

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHh--ccCCCcccceeEEEEcC----CeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIG--GLRHSNIVSIRAYCNGK----DELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~--~l~H~niv~l~~~~~~~----~~~~lV~Ey~~~  411 (640)
                      .+.||+|.||.||+|+|+ |+.||||++.... ++...+|.++.+  .|+|+||+.|.+.-...    .++|||.||.+.
T Consensus       216 ~e~IGkGRyGEVwrG~wr-Ge~VAVKiF~srd-E~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvTdYHe~  293 (513)
T KOG2052|consen  216 QEIIGKGRFGEVWRGRWR-GEDVAVKIFSSRD-ERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLVTDYHEH  293 (513)
T ss_pred             EEEecCccccceeecccc-CCceEEEEecccc-hhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEeeecccC
Confidence            478999999999999998 5779999987542 333334444443  57999999999886543    379999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhc-----CCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG-----YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-----~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      |||++||...      .++-...++++..+|.||+|||.     +++|.|.|||||+.|||+..++.+.|+|+|||-...
T Consensus       294 GSL~DyL~r~------tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~  367 (513)
T KOG2052|consen  294 GSLYDYLNRN------TVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHD  367 (513)
T ss_pred             CcHHHHHhhc------cCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEec
Confidence            9999999864      58999999999999999999994     578899999999999999999999999999986542


Q ss_pred             ----------CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCC----------CCCCCC---Ccch
Q 006559          487 ----------TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK----------MAKGDG---ELGI  543 (640)
Q Consensus       487 ----------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~----------~p~~~~---~~~~  543 (640)
                                ++.++|..|||||++......-.... -..+||||||.|+||++-+-          .||.+-   +-..
T Consensus       368 ~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fes-yk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~  446 (513)
T KOG2052|consen  368 SDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFES-YKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSF  446 (513)
T ss_pred             ccCCcccCCCCCccceeeccChHHhhhhcChhhhhh-hhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCH
Confidence                      23567999999999854322111111 24699999999999998632          355421   1111


Q ss_pred             HHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          544 VKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       544 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                      .+ ++...-...    +.|.+...-...+.+..+.++|..||..+|+.|-|+=.+.+.|.++..
T Consensus       447 ee-MrkVVCv~~----~RP~ipnrW~s~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~~  505 (513)
T KOG2052|consen  447 EE-MRKVVCVQK----LRPNIPNRWKSDPALRVMAKLMKECWYANPAARLTALRIKKTLAKLSN  505 (513)
T ss_pred             HH-Hhcceeecc----cCCCCCcccccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhc
Confidence            11 111110111    111111111234677889999999999999999999999999988863

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=6e-37  Score=327.12  Aligned_cols=249  Identities=21%  Similarity=0.344  Sum_probs=190.6

Q ss_pred             hhccccccCcceEEEEEeCC------CcEEEEEEecccc---chHHHHHHHHHHhccC-CCcccceeEEEEcCCeEEEEE
Q 006559          337 SAELLGKGCVGATYKVVLDG------GDVVVVKRIRERK---KKREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELFLVY  406 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~------~~~vavK~l~~~~---~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lV~  406 (640)
                      ..++||+|+||.||+|+...      +..||||+++...   ..+.+..|+++++++. ||||++++++|...+..|+||
T Consensus        41 ~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~~~~lv~  120 (400)
T cd05105          41 LGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIIT  120 (400)
T ss_pred             hhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCCceEEEE
Confidence            35789999999999998532      3469999997542   2356788999999996 999999999999999999999


Q ss_pred             eccCCCCHHHhhccCCCC--------------------------------------------------------------
Q 006559          407 DYLPHGSLHSLLHGSRGP--------------------------------------------------------------  424 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~--------------------------------------------------------------  424 (640)
                      |||++|+|.++++.....                                                              
T Consensus       121 Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (400)
T cd05105         121 EYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIKEASKY  200 (400)
T ss_pred             EecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhhhhhhhh
Confidence            999999999988643210                                                              


Q ss_pred             -----------------------------CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeE
Q 006559          425 -----------------------------GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNAC  475 (640)
Q Consensus       425 -----------------------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~k  475 (640)
                                                   ....+++..+++++.|+++||+|||+   .+|+||||||+|||+++++.+|
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivH~dikp~Nill~~~~~~k  277 (400)
T cd05105         201 SDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLAS---KNCVHRDLAARNVLLAQGKIVK  277 (400)
T ss_pred             hhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChHhEEEeCCCEEE
Confidence                                         01247888899999999999999994   5599999999999999999999


Q ss_pred             EccCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHH
Q 006559          476 ISDIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKW  546 (640)
Q Consensus       476 l~DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~  546 (640)
                      |+|||+++.....        ...+..|+|||++       ....++.++|||||||++|||++ |..||.........+
T Consensus       278 L~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~~~  350 (400)
T cd05105         278 ICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESI-------FDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDSTFY  350 (400)
T ss_pred             EEeCCcceeccccccccccCCcCCCcceEChhhh-------cCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHHHH
Confidence            9999998765321        1235679999964       33456789999999999999997 899986432111111


Q ss_pred             HHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          547 VQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       547 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                      . ......        .....   .....++.+++.+||+.+|++||++.+|.++|+++..
T Consensus       351 ~-~~~~~~--------~~~~~---~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~~  399 (400)
T cd05105         351 N-KIKSGY--------RMAKP---DHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLLP  399 (400)
T ss_pred             H-HHhcCC--------CCCCC---ccCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHHcC
Confidence            1 111000        00001   1223457788899999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=8.5e-37  Score=312.13  Aligned_cols=245  Identities=25%  Similarity=0.418  Sum_probs=190.4

Q ss_pred             hccccccCcceEEEEEeCCC------cEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVLDGG------DVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~------~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      .+.||+|+||.||+|...+.      ..||+|.++...   ...++.+|++.+++++||||+++++++...+..+++|||
T Consensus        10 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~   89 (283)
T cd05048          10 LEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCMLFEY   89 (283)
T ss_pred             hhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceEEEEec
Confidence            56799999999999986432      468999987542   245678899999999999999999999988999999999


Q ss_pred             cCCCCHHHhhccCCCCC-----------CCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEc
Q 006559          409 LPHGSLHSLLHGSRGPG-----------RMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACIS  477 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~-----------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~  477 (640)
                      +++|+|.+++.......           ...+++..++.++.|++.||.|||+   .+++||||||+||++++++.+||+
T Consensus        90 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~---~~i~H~dlkp~Nil~~~~~~~~L~  166 (283)
T cd05048          90 LAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSS---HHFVHRDLAARNCLVGEGLTVKIS  166 (283)
T ss_pred             CCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccccceEEEcCCCcEEEC
Confidence            99999999997542111           1357889999999999999999994   559999999999999999999999


Q ss_pred             cCCcccccCC--------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHH
Q 006559          478 DIGVHQLFHT--------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQ  548 (640)
Q Consensus       478 DfGl~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~  548 (640)
                      |||+++....        ....+..|+|||.+       ....++.++|||||||++|||+| |..||.+....  +..+
T Consensus       167 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~--~~~~  237 (283)
T cd05048         167 DFGLSRDIYSADYYRVQSKSLLPVRWMPPEAI-------LYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQ--EVIE  237 (283)
T ss_pred             CCcceeeccccccccccCCCcccccccCHHHh-------ccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHH--HHHH
Confidence            9999876422        12235679999964       33457789999999999999998 99998643211  1111


Q ss_pred             HhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          549 MMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       549 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                      ...... ..       ..   ......++.+++.+||+.+|++||++.+|.+.|+++
T Consensus       238 ~i~~~~-~~-------~~---~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~~  283 (283)
T cd05048         238 MIRSRQ-LL-------PC---PEDCPARVYALMIECWNEIPARRPRFKDIHTRLRSW  283 (283)
T ss_pred             HHHcCC-cC-------CC---cccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhcC
Confidence            111110 00       00   112345677888899999999999999999999753

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=6.7e-37  Score=310.56  Aligned_cols=251  Identities=22%  Similarity=0.280  Sum_probs=182.1

Q ss_pred             cccccCcceEEEEEeCC---CcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          340 LLGKGCVGATYKVVLDG---GDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~~---~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .||+|+||.||+|...+   ...+|+|.+....   ....+.+|++.++.++||||+++++++...+..++||||+++|+
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGD   81 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCc
Confidence            58999999999997543   3468888776442   23457789999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-----
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-----  488 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-----  488 (640)
                      |.+++...........++.....++.|++.||+|||+   .+|+||||||+|||+++++.+||+|||+++.....     
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~  158 (269)
T cd05042          82 LKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQ---ADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYIT  158 (269)
T ss_pred             HHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHh---cCEecccccHhheEecCCCcEEEeccccccccccchheec
Confidence            9999976543222345678889999999999999994   55999999999999999999999999998653211     


Q ss_pred             ---ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          489 ---FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       489 ---~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         ...+..|+|||+............++.++|||||||++|||++ |+.||........ ........  .....++..
T Consensus       159 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~-~~~~~~~~--~~~~~~~~~  235 (269)
T cd05042         159 KDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQV-LKQVVREQ--DIKLPKPQL  235 (269)
T ss_pred             cCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHHH-HHHHhhcc--CccCCCCcc
Confidence               1234569999976433222234566789999999999999999 7888864321110 11111100  000111111


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMI  602 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L  602 (640)
                        +....   ..+.+++..|| .||++||++.+|.+.|
T Consensus       236 --~~~~~---~~~~~~~~~~~-~dp~~Rpt~~~v~~~l  267 (269)
T cd05042         236 --DLKYS---DRWYEVMQFCW-LDPETRPTAEEVHELL  267 (269)
T ss_pred             --cccCC---HHHHHHHHHHh-cCcccccCHHHHHHHh
Confidence              11112   23444566688 4999999999999887

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-38  Score=332.23  Aligned_cols=249  Identities=22%  Similarity=0.336  Sum_probs=199.0

Q ss_pred             HHHHHhhccccccCcceEEEEEe-CCCc----EEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEE
Q 006559          332 DLLKSSAELLGKGCVGATYKVVL-DGGD----VVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELF  403 (640)
Q Consensus       332 ~~~~~~~~~iG~G~fg~Vy~~~~-~~~~----~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~  403 (640)
                      |.......+||+|+||+||+|.+ +.|+    +||+|.+.+.   +...++.+|+-.|.+++|||+++|+|+|.... +.
T Consensus       695 Etelkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~q  773 (1177)
T KOG1025|consen  695 ETELKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQ  773 (1177)
T ss_pred             hhhhhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HH
Confidence            33334467899999999999985 4443    5899998876   34678899999999999999999999998665 88


Q ss_pred             EEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccc
Q 006559          404 LVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ  483 (640)
Q Consensus       404 lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~  483 (640)
                      ||++|||.|+|.++++..++    ++.-...+.+..|||+||.|||   +.++|||||.++|||+.+-..+||.|||+++
T Consensus       774 lvtq~mP~G~LlDyvr~hr~----~igsq~lLnw~~QIAkgM~YLe---~qrlVHrdLaaRNVLVksP~hvkitdfgla~  846 (1177)
T KOG1025|consen  774 LVTQLMPLGCLLDYVREHRD----NIGSQDLLNWCYQIAKGMKYLE---EQRLVHRDLAARNVLVKSPNHVKITDFGLAK  846 (1177)
T ss_pred             HHHHhcccchHHHHHHHhhc----cccHHHHHHHHHHHHHHHHHHH---hcchhhhhhhhhheeecCCCeEEEEecchhh
Confidence            99999999999999998664    5778899999999999999999   5669999999999999999999999999999


Q ss_pred             ccCCCcc--------ccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhccc
Q 006559          484 LFHTPFF--------INDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDE  554 (640)
Q Consensus       484 ~~~~~~~--------~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~  554 (640)
                      .+.....        ....|||-|       ......|+.++|||||||++||++| |..|+++-....+  -..+...+
T Consensus       847 ll~~d~~ey~~~~gK~pikwmale-------~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI--~dlle~ge  917 (1177)
T KOG1025|consen  847 LLAPDEKEYSAPGGKVPIKWMALE-------SIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEI--PDLLEKGE  917 (1177)
T ss_pred             ccCcccccccccccccCcHHHHHH-------HhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHHh--hHHHhccc
Confidence            8764321        133455555       5677899999999999999999999 9999875322211  11111111


Q ss_pred             ccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          555 SAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       555 ~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                              ++.   ..+.+..++..++.+||..|++.||+++++...+.++..+
T Consensus       918 --------RLs---qPpiCtiDVy~~mvkCwmid~~~rp~fkel~~~fs~~ard  960 (1177)
T KOG1025|consen  918 --------RLS---QPPICTIDVYMVMVKCWMIDADSRPTFKELAEEFSRMARD  960 (1177)
T ss_pred             --------cCC---CCCCccHHHHHHHHHHhccCcccCccHHHHHHHHHHHhcC
Confidence                    111   2235667899999999999999999999999888887654

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7e-38  Score=325.82  Aligned_cols=240  Identities=24%  Similarity=0.354  Sum_probs=191.5

Q ss_pred             cccccCcceEEEEEeCC-CcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHH
Q 006559          340 LLGKGCVGATYKVVLDG-GDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~  416 (640)
                      ++|+|.||+||-|+..+ ...+|||.+.++  ...+...+|+.+.+.|+|.|||+++|.|.+.+.+-|.||-+|+|+|.+
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLSs  661 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLSS  661 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHHH
Confidence            79999999999999554 556999999876  345678899999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC-CCCCeEEccCCcccccC------CCc
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIGVHQLFH------TPF  489 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~-~~~~~kl~DfGl~~~~~------~~~  489 (640)
                      +|+...++  ..=.+...-.+..||.+||.|||   +..|||||||..|||++ -.|.+||+|||.++.+.      ..+
T Consensus       662 LLrskWGP--lKDNEstm~fYtkQILeGLkYLH---en~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TETF  736 (1226)
T KOG4279|consen  662 LLRSKWGP--LKDNESTMNFYTKQILEGLKYLH---ENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTETF  736 (1226)
T ss_pred             HHHhccCC--CccchhHHHHHHHHHHHHhhhhh---hcceeeccccCCcEEEeeccceEEecccccchhhccCCcccccc
Confidence            99988753  22266778889999999999999   55699999999999997 46899999999988764      356


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChH
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKE  569 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  569 (640)
                      .+|..|||||++.     ...+.|+.++|||||||++.||.||++||-+-+...+...+...     . .+.+.  .+.+
T Consensus       737 TGTLQYMAPEvID-----qG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFkVGm-----y-KvHP~--iPee  803 (1226)
T KOG4279|consen  737 TGTLQYMAPEVID-----QGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFKVGM-----Y-KVHPP--IPEE  803 (1226)
T ss_pred             ccchhhhChHhhc-----cCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhhhcc-----e-ecCCC--CcHH
Confidence            7899999999984     34466788999999999999999999999753322221111100     0 01111  2222


Q ss_pred             HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          570 MEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       570 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      +   ..+...++++|..+||.+||++.+++.
T Consensus       804 l---saeak~FilrcFepd~~~R~sA~~LL~  831 (1226)
T KOG4279|consen  804 L---SAEAKNFILRCFEPDPCDRPSAKDLLQ  831 (1226)
T ss_pred             H---HHHHHHHHHHHcCCCcccCccHHHhcc
Confidence            3   335666888999999999999998864

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=9.3e-37  Score=322.14  Aligned_cols=239  Identities=22%  Similarity=0.346  Sum_probs=181.7

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||.||+|+.. +++.||||.+....   ..+.+.+|++++++++|+||+++++++...+..++||||+++|+
T Consensus        79 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~  158 (353)
T PLN00034         79 VNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGGS  158 (353)
T ss_pred             hhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEecCCCCc
Confidence            567999999999999864 68899999986542   24568889999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------  487 (640)
                      |.+..         ...+..+..++.||+.||+|||+   .+|+||||||+|||+++++.+||+|||+++....      
T Consensus       159 L~~~~---------~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~  226 (353)
T PLN00034        159 LEGTH---------IADEQFLADVARQILSGIAYLHR---RHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCN  226 (353)
T ss_pred             ccccc---------cCCHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEcCCCCEEEcccccceeccccccccc
Confidence            86532         24566778899999999999994   4599999999999999999999999999876542      


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      ...++..|+|||++....  ......+.++|||||||++|||++|+.||......  .|........     ........
T Consensus       227 ~~~gt~~y~aPE~~~~~~--~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~--~~~~~~~~~~-----~~~~~~~~  297 (353)
T PLN00034        227 SSVGTIAYMSPERINTDL--NHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQG--DWASLMCAIC-----MSQPPEAP  297 (353)
T ss_pred             ccccCccccCcccccccc--ccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCc--cHHHHHHHHh-----ccCCCCCC
Confidence            235688999999753221  11223346899999999999999999999732211  1211111000     00000001


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                         .....++.+++.+||+.||++||++.|+++
T Consensus       298 ---~~~~~~l~~li~~~l~~~P~~Rpt~~ell~  327 (353)
T PLN00034        298 ---ATASREFRHFISCCLQREPAKRWSAMQLLQ  327 (353)
T ss_pred             ---CccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence               112235677888899999999999999876

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=4e-37  Score=320.77  Aligned_cols=233  Identities=21%  Similarity=0.300  Sum_probs=182.8

Q ss_pred             ccccccCcceEEEEEe-CCCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          339 ELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ++||+|+||.||+++. .+|..||+|.++...     ....+.+|++++++++||||+++++++...+..|+||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            3689999999999985 468899999987541     2234567899999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      +|..++....     .+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....     
T Consensus        81 ~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~  152 (323)
T cd05595          81 ELFFHLSRER-----VFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATM  152 (323)
T ss_pred             cHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHEEEcCCCCEEecccHHhccccCCCCcc
Confidence            9999887543     57899999999999999999995   4599999999999999999999999999875321     


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                       ...++..|+|||++       ....++.++|||||||++|||+||+.||........  .+.....         ....
T Consensus       153 ~~~~gt~~y~aPE~~-------~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~--~~~~~~~---------~~~~  214 (323)
T cd05595         153 KTFCGTPEYLAPEVL-------EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERL--FELILME---------EIRF  214 (323)
T ss_pred             ccccCCcCcCCcccc-------cCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHHHH--HHHHhcC---------CCCC
Confidence             23467899999964       344677899999999999999999999975332111  1111100         0001


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRP-----NMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RP-----s~~~v~~  600 (640)
                      +....   .++.+++..||+.||++||     ++.++++
T Consensus       215 p~~~~---~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~  250 (323)
T cd05595         215 PRTLS---PEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  250 (323)
T ss_pred             CCCCC---HHHHHHHHHHccCCHHHhCCCCCCCHHHHHc
Confidence            11122   2455677789999999998     7777754

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=2.3e-36  Score=303.47  Aligned_cols=238  Identities=24%  Similarity=0.373  Sum_probs=186.0

Q ss_pred             ccccccCcceEEEEEe-CCCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          339 ELLGKGCVGATYKVVL-DGGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      +.||+|+||.||+|+. .+++.||+|.+...   .....+.+|++++++++||||++++++|......++||||+++++|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDF   80 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcH
Confidence            4699999999999986 46888999987654   2245688899999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc-----
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF-----  489 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~-----  489 (640)
                      .+++....    ..+++..++.++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++......     
T Consensus        81 ~~~~~~~~----~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  153 (252)
T cd05084          81 LTFLRTEG----PRLKVKELIQMVENAAAGMEYLES---KHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTG  153 (252)
T ss_pred             HHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHHh---CCccccccchheEEEcCCCcEEECccccCcccccccccccC
Confidence            99997532    247899999999999999999994   559999999999999999999999999987643211     


Q ss_pred             ---cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          490 ---FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       490 ---~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                         ..+..|+|||.+       ....++.++|||||||++|||++ |..||........  ........        ...
T Consensus       154 ~~~~~~~~y~aPE~~-------~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~~--~~~~~~~~--------~~~  216 (252)
T cd05084         154 GMKQIPVKWTAPEAL-------NYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQT--REAIEQGV--------RLP  216 (252)
T ss_pred             CCCCCceeecCchhh-------cCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHHHH--HHHHHcCC--------CCC
Confidence               113459999964       34457789999999999999998 8888864221111  11111100        000


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIE  603 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~  603 (640)
                      .+   ......+.+++.+|++.+|++||++.++.++|+
T Consensus       217 ~~---~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  251 (252)
T cd05084         217 CP---ELCPDAVYRLMERCWEYDPGQRPSFSTVHQELQ  251 (252)
T ss_pred             Cc---ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence            11   112345777888999999999999999999886

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.4e-37  Score=304.52  Aligned_cols=236  Identities=22%  Similarity=0.334  Sum_probs=192.9

Q ss_pred             HhhccccccCcceEEEEE-eCCCcEEEEEEecccc--ch---HHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          336 SSAELLGKGCVGATYKVV-LDGGDVVVVKRIRERK--KK---REVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       336 ~~~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~~--~~---~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ...+.||+|.||.|-++. ...|+.||||.+++.+  ++   -.+.+|+++|..|+||||+.++.+|..++...|||||.
T Consensus        56 E~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivMEYa  135 (668)
T KOG0611|consen   56 EITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVMEYA  135 (668)
T ss_pred             HHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEEec
Confidence            457789999999999998 4779999999998763  22   34678999999999999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--  487 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--  487 (640)
                      .+|.|++|+.+.+     .++..+...+++||..|+.|+|   +.+++|||||.+|||||.++++||+||||+..+..  
T Consensus       136 S~GeLYDYiSer~-----~LsErEaRhfFRQIvSAVhYCH---knrVvHRDLKLENILLD~N~NiKIADFGLSNly~~~k  207 (668)
T KOG0611|consen  136 SGGELYDYISERG-----SLSEREARHFFRQIVSAVHYCH---KNRVVHRDLKLENILLDQNNNIKIADFGLSNLYADKK  207 (668)
T ss_pred             CCccHHHHHHHhc-----cccHHHHHHHHHHHHHHHHHHh---hccceecccchhheeecCCCCeeeeccchhhhhcccc
Confidence            9999999998765     5889999999999999999999   66799999999999999999999999999988764  


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         .+++++-|..||+.-+.|+.      .+.+|-||+||+||-|+.|.+||++.+...  .++.+...    ....+  
T Consensus       208 fLqTFCGSPLYASPEIvNG~PY~------GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk~--lvrQIs~G----aYrEP--  273 (668)
T KOG0611|consen  208 FLQTFCGSPLYASPEIVNGTPYK------GPEVDSWSLGVLLYTLVYGTMPFDGRDHKR--LVRQISRG----AYREP--  273 (668)
T ss_pred             HHHHhcCCcccCCccccCCCCCC------CCccchhhHHHHHHHHhhcccccCCchHHH--HHHHhhcc----cccCC--
Confidence               46788899999986544432      478999999999999999999998654321  12221111    00111  


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                             +...+..-++.+++..+|++|-|+.+|..
T Consensus       274 -------~~PSdA~gLIRwmLmVNP~RRATieDiAs  302 (668)
T KOG0611|consen  274 -------ETPSDASGLIRWMLMVNPERRATIEDIAS  302 (668)
T ss_pred             -------CCCchHHHHHHHHHhcCcccchhHHHHhh
Confidence                   11223445677799999999999998864

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=2.7e-36  Score=305.63  Aligned_cols=248  Identities=17%  Similarity=0.320  Sum_probs=195.8

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+. .++..||||.+...     .....+.+|+++++.++||||+++++++...+..++|+||+++
T Consensus         7 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~   86 (267)
T cd08228           7 EKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVLELADA   86 (267)
T ss_pred             eeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEEEecCC
Confidence            56799999999999995 46889999987532     2234577899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++..... ....++......++.|++.||+|||+   .+++|+||||+||+++.++.++|+|||+++....    
T Consensus        87 ~~L~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~~  162 (267)
T cd08228          87 GDLSQMIKYFKK-QKRLIPERTVWKYFVQLCSAVEHMHS---RRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTA  162 (267)
T ss_pred             CcHHHHHHHhhh-ccCCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCCHHHEEEcCCCCEEECccccceeccchhHH
Confidence            999988854321 12257888999999999999999994   5699999999999999999999999999877543    


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                        ...++..|+|||.+       ....++.++|||||||++|||+||+.||.........+.+......      .+...
T Consensus       163 ~~~~~~~~~~~aPE~~-------~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~------~~~~~  229 (267)
T cd08228         163 AHSLVGTPYYMSPERI-------HENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCD------YPPLP  229 (267)
T ss_pred             HhcCCCCccccChhhh-------ccCCCCchhhHHHHHHHHHHHhcCCCCCccccccHHHHHHHHhcCC------CCCCC
Confidence              22456789999964       3345678899999999999999999999765444444443322211      00110


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                          ......++.+++.+||+.+|++||++.+|++.+++++
T Consensus       230 ----~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~~  266 (267)
T cd08228         230 ----TEHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQMH  266 (267)
T ss_pred             ----hhhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHhc
Confidence                1122345777888999999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=1e-36  Score=318.87  Aligned_cols=188  Identities=22%  Similarity=0.325  Sum_probs=161.9

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||.||+++.. ++..+|+|.+...   ...+.+.+|++++++++||||+++++++...+..++||||+++|+
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   89 (331)
T cd06649          10 ISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGS   89 (331)
T ss_pred             EEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEeecCCCCc
Confidence            467999999999999965 5778999988754   224568889999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----Cc
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----PF  489 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----~~  489 (640)
                      |.+++....     .+++..+..++.|++.||.|||+.  .+|+||||||+|||++.++.+||+|||+++....    ..
T Consensus        90 L~~~l~~~~-----~~~~~~~~~~~~~i~~~l~~lH~~--~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  162 (331)
T cd06649          90 LDQVLKEAK-----RIPEEILGKVSIAVLRGLAYLREK--HQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSF  162 (331)
T ss_pred             HHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHhhc--CCEEcCCCChhhEEEcCCCcEEEccCcccccccccccccC
Confidence            999997543     478889999999999999999952  3599999999999999999999999999876532    23


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG  539 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~  539 (640)
                      .++..|+|||++       ....++.++|||||||++|||+||+.||...
T Consensus       163 ~g~~~y~aPE~~-------~~~~~~~~~DiwslG~il~el~tg~~p~~~~  205 (331)
T cd06649         163 VGTRSYMSPERL-------QGTHYSVQSDIWSMGLSLVELAIGRYPIPPP  205 (331)
T ss_pred             CCCcCcCCHhHh-------cCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence            468899999964       3345778999999999999999999999643

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=1.7e-36  Score=306.51  Aligned_cols=242  Identities=23%  Similarity=0.365  Sum_probs=192.3

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc-chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      .+.||+|+||.||+|... .+..||+|.+.... ...++.+|++++++++|+||+++++++...+..++||||+++|+|.
T Consensus        11 ~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   90 (263)
T cd05052          11 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLL   90 (263)
T ss_pred             eeecCCcccceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeCCCCcHH
Confidence            567999999999999864 57889999987553 3456888999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc------
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------  489 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~------  489 (640)
                      +++....   ...+++..++.++.|+++||+|||.   .+++||||||+||++++++.+||+|||+++......      
T Consensus        91 ~~~~~~~---~~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~~~~~  164 (263)
T cd05052          91 DYLRECN---RQEVNAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAG  164 (263)
T ss_pred             HHHHhCC---CCCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccCcceEEEcCCCcEEeCCCccccccccceeeccCC
Confidence            9987543   2358899999999999999999994   569999999999999999999999999988764321      


Q ss_pred             -cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          490 -FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       490 -~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                       ..+..|+|||.+       ....++.++|||||||++|||+| |..|+.....  .+..+.......      ..  ..
T Consensus       165 ~~~~~~y~aPE~~-------~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~--~~~~~~~~~~~~------~~--~~  227 (263)
T cd05052         165 AKFPIKWTAPESL-------AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL--SQVYELLEKGYR------ME--RP  227 (263)
T ss_pred             CCCccccCCHHHh-------ccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCH--HHHHHHHHCCCC------CC--CC
Confidence             124579999954       34567789999999999999998 8999864322  222222111100      00  01


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                      .   .....+.+++.+||+.+|++||++.++.++|+.+
T Consensus       228 ~---~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         228 E---GCPPKVYELMRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             C---CCCHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence            1   1224577788899999999999999999999876

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=2e-36  Score=304.85  Aligned_cols=239  Identities=23%  Similarity=0.369  Sum_probs=189.4

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHH
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~  416 (640)
                      .+.||+|+||.||+++..++..+|+|.++.. ....++.+|++++++++||||+++++++...+..++||||+++|+|.+
T Consensus         9 ~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~   88 (256)
T cd05113           9 LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLN   88 (256)
T ss_pred             eeEecCcccceEEEEEecCCCcEEEEEcCCCcccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCCCCcHHH
Confidence            4579999999999999888778999998765 335668899999999999999999999998889999999999999999


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc-------
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF-------  489 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~-------  489 (640)
                      ++.....    .+++..++.++.|++.||+|||   ..+++|+||||+||+++.++.+||+|||+++......       
T Consensus        89 ~i~~~~~----~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~  161 (256)
T cd05113          89 YLREHGK----RFQPSQLLEMCKDVCEGMAYLE---SKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGS  161 (256)
T ss_pred             HHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---hCCeeccccCcceEEEcCCCCEEECCCccceecCCCceeecCCC
Confidence            9975431    5789999999999999999999   4569999999999999999999999999987653221       


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..+..|++||..       ....++.++|||||||++|||+| |+.||......  .............        .. 
T Consensus       162 ~~~~~y~~pe~~-------~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~--~~~~~~~~~~~~~--------~~-  223 (256)
T cd05113         162 KFPVRWSPPEVL-------LYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNS--ETVEKVSQGLRLY--------RP-  223 (256)
T ss_pred             ccChhhCCHHHH-------hcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHH--HHHHHHhcCCCCC--------CC-
Confidence            124569999964       33457789999999999999999 99998643211  1111111111000        00 


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIE  603 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~  603 (640)
                        ......+.+++.+||+.+|++||++.++++.|+
T Consensus       224 --~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~~  256 (256)
T cd05113         224 --HLASEKVYAIMYSCWHEKAEERPTFQQLLSSIE  256 (256)
T ss_pred             --CCCCHHHHHHHHHHcCCCcccCCCHHHHHHhhC
Confidence              012345778888999999999999999998764

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=6.9e-37  Score=319.65  Aligned_cols=233  Identities=21%  Similarity=0.322  Sum_probs=183.8

Q ss_pred             ccccccCcceEEEEEe-CCCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          339 ELLGKGCVGATYKVVL-DGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ++||+|+||.||+++. .++..||||.+...     .....+.+|+++++.++||||+++.+++...+..|+||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            3689999999999985 46889999998754     12345677899999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      +|.+++....     .+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....     
T Consensus        81 ~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~~  152 (328)
T cd05593          81 ELFFHLSRER-----VFSEDRTRFYGAEIVSALDYLHS---GKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATM  152 (328)
T ss_pred             CHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeEecccCHHHeEECCCCcEEEecCcCCccCCCccccc
Confidence            9999887543     58899999999999999999994   5699999999999999999999999999875321     


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                       ...++..|+|||++       ....++.++|||||||++|||+||+.||.....  ....+......         ...
T Consensus       153 ~~~~gt~~y~aPE~~-------~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~--~~~~~~~~~~~---------~~~  214 (328)
T cd05593         153 KTFCGTPEYLAPEVL-------EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH--EKLFELILMED---------IKF  214 (328)
T ss_pred             ccccCCcCccChhhh-------cCCCCCccCCccccchHHHHHhhCCCCCCCCCH--HHHHHHhccCC---------ccC
Confidence             23468899999964       344567899999999999999999999975322  11111111110         001


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRP-----NMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RP-----s~~~v~~  600 (640)
                      +....   .++.+++.+|++.||++||     ++.++++
T Consensus       215 p~~~~---~~~~~li~~~L~~dP~~R~~~~~~~~~~il~  250 (328)
T cd05593         215 PRTLS---ADAKSLLSGLLIKDPNKRLGGGPDDAKEIMR  250 (328)
T ss_pred             CCCCC---HHHHHHHHHHcCCCHHHcCCCCCCCHHHHhc
Confidence            11122   2456677789999999997     7888864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-37  Score=293.95  Aligned_cols=188  Identities=23%  Similarity=0.376  Sum_probs=166.3

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ...||.|+||.|.+++.+ +|..+|+|.+...+     ..+....|.++|+.+.||.++++.+.|.+.+.+||||||.++
T Consensus        49 ~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvmeyv~G  128 (355)
T KOG0616|consen   49 LKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVMEYVPG  128 (355)
T ss_pred             eeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEEeccCC
Confidence            567999999999999964 57889999997652     234566789999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---  488 (640)
                      |.|..++++.+     +++......+|.||+.||+|||+.   .|++|||||+|||||.+|.+||.|||.++.+...   
T Consensus       129 GElFS~Lrk~~-----rF~e~~arFYAAeivlAleylH~~---~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~rT~T  200 (355)
T KOG0616|consen  129 GELFSYLRKSG-----RFSEPHARFYAAEIVLALEYLHSL---DIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGRTWT  200 (355)
T ss_pred             ccHHHHHHhcC-----CCCchhHHHHHHHHHHHHHHHHhc---CeeeccCChHHeeeccCCcEEEEeccceEEecCcEEE
Confidence            99999999765     588889999999999999999954   4999999999999999999999999999987653   


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGE  540 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~  540 (640)
                      .++|+.|+|||++       ....+..++|.|||||++|||+.|.+||.+..
T Consensus       201 lCGTPeYLAPEii-------~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~  245 (355)
T KOG0616|consen  201 LCGTPEYLAPEII-------QSKGYNKAVDWWALGVLIYEMLAGYPPFYDDN  245 (355)
T ss_pred             ecCCccccChHHh-------hcCCCCcchhHHHHHHHHHHHHcCCCCCcCCC
Confidence            4679999999974       45667788999999999999999999997543

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=6.9e-37  Score=313.44  Aligned_cols=227  Identities=19%  Similarity=0.357  Sum_probs=179.5

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ...+||+|+||.||+|+- .+|.++|+|++++..     .-+.+..|-.+|...++|+||+|+..|++.+.+||||||+|
T Consensus       145 ~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYLiMEylP  224 (550)
T KOG0605|consen  145 LLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYLIMEYLP  224 (550)
T ss_pred             hheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEEEEEecC
Confidence            356899999999999995 568999999998762     23456778889999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC----
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH----  486 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~----  486 (640)
                      ||++..+|....     .|+......++.+++.|++-||   +.++|||||||+|+|||..|++||+||||+.-+.    
T Consensus       225 GGD~mTLL~~~~-----~L~e~~arfYiaE~vlAI~~iH---~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~  296 (550)
T KOG0605|consen  225 GGDMMTLLMRKD-----TLTEDWARFYIAETVLAIESIH---QLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHR  296 (550)
T ss_pred             CccHHHHHHhcC-----cCchHHHHHHHHHHHHHHHHHH---HcCcccccCChhheeecCCCCEeeccccccchhhhhhh
Confidence            999999998664     6888888889999999999999   5669999999999999999999999999864210    


Q ss_pred             ----------------------C---------------------------CccccccccCCccccCCCCccccCCCCCcc
Q 006559          487 ----------------------T---------------------------PFFINDAYNAPELKFNNNNNYSQRKFWQRC  517 (640)
Q Consensus       487 ----------------------~---------------------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~  517 (640)
                                            .                           ..++|+.|+|||+++       +..|+..+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll-------~kgY~~~c  369 (550)
T KOG0605|consen  297 IESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLL-------GKGYGKEC  369 (550)
T ss_pred             hhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHh-------cCCCCccc
Confidence                                  0                           124578899999864       34577889


Q ss_pred             chHHHHHHHHHHHhCCCCCCCCCcc-----hHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCC
Q 006559          518 DVYSFGVVLLEILTGKMAKGDGELG-----IVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDR  592 (640)
Q Consensus       518 DV~SfGvvl~el~tg~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~R  592 (640)
                      |+||+|||+|||+.|-+||..+...     ++.|........            ....+   .+..+++.+|+. ||++|
T Consensus       370 DwWSLG~ImyEmLvGyPPF~s~tp~~T~rkI~nwr~~l~fP~------------~~~~s---~eA~DLI~rll~-d~~~R  433 (550)
T KOG0605|consen  370 DWWSLGCIMYEMLVGYPPFCSETPQETYRKIVNWRETLKFPE------------EVDLS---DEAKDLITRLLC-DPENR  433 (550)
T ss_pred             cHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhhhccCCC------------cCccc---HHHHHHHHHHhc-CHHHh
Confidence            9999999999999999999864322     222332222110            11112   345556666777 99999


Q ss_pred             CC
Q 006559          593 PN  594 (640)
Q Consensus       593 Ps  594 (640)
                      --
T Consensus       434 LG  435 (550)
T KOG0605|consen  434 LG  435 (550)
T ss_pred             cC
Confidence            75

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=3e-37  Score=286.96  Aligned_cols=252  Identities=21%  Similarity=0.234  Sum_probs=197.0

Q ss_pred             hccccccCcceEEEEE-eCCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEc-----CCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVV-LDGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNG-----KDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~-----~~~~~lV~Ey~  409 (640)
                      .+.+|+|||+-||.++ ..++..+|+|++.-.  +..+...+|++..++++|||+++++++...     ..+.||+++|.
T Consensus        26 ~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~yll~Pyy  105 (302)
T KOG2345|consen   26 QRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAYLLLPYY  105 (302)
T ss_pred             eeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEEEEeehh
Confidence            5679999999999998 677889999998654  445667889999999999999999888653     34699999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--  487 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--  487 (640)
                      ..|+|.+.+...... ...++..+.+.|+.+|++||++||+. .++++||||||.|||+.+.+.+++.|||-+....-  
T Consensus       106 ~~Gsl~d~i~~~k~k-g~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i~i  183 (302)
T KOG2345|consen  106 KRGSLLDEIERLKIK-GNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLPVLMDLGSATQAPIQI  183 (302)
T ss_pred             ccccHHHHHHHHhhc-CCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCceEEEeccCccccceEe
Confidence            999999998765432 23589999999999999999999976 46799999999999999999999999998765421  


Q ss_pred             -------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccc
Q 006559          488 -------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDE  554 (640)
Q Consensus       488 -------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~  554 (640)
                                   ...-|..|+|||++--.    .....++++|||||||+||+|+.|..||+..          ..+.+
T Consensus       184 ~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk----~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~----------~~~Gg  249 (302)
T KOG2345|consen  184 EGSRQALRLQEWAEERCTIPYRAPELFNVK----SHCTITERTDIWSLGCTLYAMMFGESPFERI----------YQQGG  249 (302)
T ss_pred             echHHHHHHHHHHHHhCCCcccCchheecc----cCcccccccchhhhhHHHHHHHHcCCcchHH----------hhcCC
Confidence                         11237789999986422    2345789999999999999999999999731          01111


Q ss_pred             c-cccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          555 S-AWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       555 ~-~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                      . ...+....+..+.. ......+.+++..|++.||.+||++.+++..++++.
T Consensus       250 SlaLAv~n~q~s~P~~-~~yse~l~~lik~mlqvdP~qRP~i~~ll~~~d~Li  301 (302)
T KOG2345|consen  250 SLALAVQNAQISIPNS-SRYSEALHQLIKSMLQVDPNQRPTIPELLSKLDDLI  301 (302)
T ss_pred             eEEEeeeccccccCCC-CCccHHHHHHHHHHhcCCcccCCCHHHHHHHHHhhc
Confidence            1 12233333322221 123446778888899999999999999999988764

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=1.8e-36  Score=310.80  Aligned_cols=249  Identities=23%  Similarity=0.379  Sum_probs=193.2

Q ss_pred             hhccccccCcceEEEEEeC------CCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          337 SAELLGKGCVGATYKVVLD------GGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~------~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      ..+.||+|+||.||++...      ++..+|+|.+...  ...+.+.+|+.++++++||||+++++++...+..++||||
T Consensus         9 ~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   88 (288)
T cd05093           9 LKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEY   88 (288)
T ss_pred             eccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEc
Confidence            3567999999999999742      3456899988754  2345688899999999999999999999999999999999


Q ss_pred             cCCCCHHHhhccCCC--------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCC
Q 006559          409 LPHGSLHSLLHGSRG--------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIG  480 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~--------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfG  480 (640)
                      +++|+|.+++.....        .....+++..++.++.|++.||+|||+   .+++||||||+||++++++.+||+|||
T Consensus        89 ~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~---~~i~H~dlkp~Nili~~~~~~kl~dfg  165 (288)
T cd05093          89 MKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKIGDFG  165 (288)
T ss_pred             CCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccCcceEEEccCCcEEeccCC
Confidence            999999999875431        112358999999999999999999994   569999999999999999999999999


Q ss_pred             cccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhh
Q 006559          481 VHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMG  551 (640)
Q Consensus       481 l~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~  551 (640)
                      +++.....        ...+..|+|||++       ....++.++|||||||++|||+| |+.||......  .......
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~--~~~~~i~  236 (288)
T cd05093         166 MSRDVYSTDYYRVGGHTMLPIRWMPPESI-------MYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN--EVIECIT  236 (288)
T ss_pred             ccccccCCceeecCCCCCccccccCHHHh-------ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHH
Confidence            98754321        1224579999964       34567789999999999999999 89998643211  1111111


Q ss_pred             cccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          552 QDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       552 ~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ... ...       ...   ....++.+++.+||+.+|.+|||+.+|...|+++...
T Consensus       237 ~~~-~~~-------~~~---~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~  282 (288)
T cd05093         237 QGR-VLQ-------RPR---TCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKA  282 (288)
T ss_pred             cCC-cCC-------CCC---CCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHh
Confidence            110 000       000   1223578888999999999999999999999998854

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=2.4e-36  Score=305.38  Aligned_cols=236  Identities=22%  Similarity=0.316  Sum_probs=181.2

Q ss_pred             ccccccCcceEEEEEeCCC-------------cEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEE
Q 006559          339 ELLGKGCVGATYKVVLDGG-------------DVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELF  403 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~-------------~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~  403 (640)
                      +.||+|+||.||+|++...             ..|++|.+...  .....+.+|+.+++.++||||+++++++......+
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~   80 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENI   80 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCE
Confidence            3689999999999985321             24888887654  23346778889999999999999999999999999


Q ss_pred             EEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC-------eEE
Q 006559          404 LVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN-------ACI  476 (640)
Q Consensus       404 lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~-------~kl  476 (640)
                      +||||+++|+|..+++...    .++++..+++++.||++||+|||   ..+|+||||||+|||++.++.       +|+
T Consensus        81 lv~e~~~~~~l~~~~~~~~----~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l  153 (262)
T cd05077          81 MVEEFVEFGPLDLFMHRKS----DVLTTPWKFKVAKQLASALSYLE---DKDLVHGNVCTKNILLAREGIDGECGPFIKL  153 (262)
T ss_pred             EEEecccCCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHhh---hCCeECCCCCcccEEEecCCccCCCCceeEe
Confidence            9999999999999887543    25889999999999999999999   456999999999999987664       899


Q ss_pred             ccCCcccccCC--CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHH-hCCCCCCCCCcchHHHHHHhhcc
Q 006559          477 SDIGVHQLFHT--PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEIL-TGKMAKGDGELGIVKWVQMMGQD  553 (640)
Q Consensus       477 ~DfGl~~~~~~--~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~-tg~~p~~~~~~~~~~~~~~~~~~  553 (640)
                      +|||++.....  ....+..|+|||++.      ....++.++|||||||++|||+ +|+.|+...........  ....
T Consensus       154 ~d~g~~~~~~~~~~~~~~~~y~aPE~~~------~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~--~~~~  225 (262)
T cd05077         154 SDPGIPITVLSRQECVERIPWIAPECVE------DSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAEKERF--YEGQ  225 (262)
T ss_pred             CCCCCCccccCcccccccccccChhhhc------CCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhHHHHH--HhcC
Confidence            99999876543  234577899999642      2345678999999999999998 58888864322111111  0000


Q ss_pred             cccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 006559          554 ESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMI  602 (640)
Q Consensus       554 ~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L  602 (640)
                         .     .. ..    ....++.+++.+||+.||++||++.++++.+
T Consensus       226 ---~-----~~-~~----~~~~~~~~li~~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         226 ---C-----ML-VT----PSCKELADLMTHCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             ---c-----cC-CC----CChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence               0     00 00    1123567788899999999999999998765

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=4.8e-36  Score=306.12  Aligned_cols=242  Identities=23%  Similarity=0.320  Sum_probs=185.7

Q ss_pred             hccccccCcceEEEEEeC-CCc----EEEEEEeccccc---hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVLD-GGD----VVVVKRIRERKK---KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~----~vavK~l~~~~~---~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .+.||+|+||+||+|++. ++.    .+++|.+.....   .+++..|+..+++++||||+++++++. ....++++||+
T Consensus        12 ~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~-~~~~~~i~e~~   90 (279)
T cd05111          12 LKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICP-GASLQLVTQLS   90 (279)
T ss_pred             ccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEEC-CCccEEEEEeC
Confidence            467999999999999863 344    377787764422   245666777889999999999999886 45678999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-  488 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-  488 (640)
                      ++|+|.+++....+    .++|.....++.|++.||+|||+   .+++||||||+|||+++++.+||+|||+++..... 
T Consensus        91 ~~gsL~~~l~~~~~----~~~~~~~~~i~~qi~~~l~~lH~---~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~  163 (279)
T cd05111          91 PLGSLLDHVRQHRD----SLDPQRLLNWCVQIAKGMYYLEE---HRMVHRNLAARNILLKSDSIVQIADFGVADLLYPDD  163 (279)
T ss_pred             CCCcHHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHHH---CCEeccccCcceEEEcCCCcEEEcCCccceeccCCC
Confidence            99999999975432    58899999999999999999994   55999999999999999999999999999765321 


Q ss_pred             -------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcch-HHHHHHhhcccccccc
Q 006559          489 -------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGI-VKWVQMMGQDESAWEV  559 (640)
Q Consensus       489 -------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~-~~~~~~~~~~~~~~~~  559 (640)
                             ..++..|+|||.+       ....++.++|||||||++|||+| |+.||.+..... ..+++.   ....   
T Consensus       164 ~~~~~~~~~~~~~y~~pE~~-------~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~---~~~~---  230 (279)
T cd05111         164 KKYFYSEHKTPIKWMALESI-------LFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHEVPDLLEK---GERL---  230 (279)
T ss_pred             cccccCCCCCcccccCHHHh-------ccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHC---CCcC---
Confidence                   1234579999964       34557789999999999999998 999997543221 112111   1000   


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ..+.        .+...+.+++.+||..+|++||++.|+.+.|+.+..+
T Consensus       231 ~~~~--------~~~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~~  271 (279)
T cd05111         231 AQPQ--------ICTIDVYMVMVKCWMIDENVRPTFKELANEFTRMARD  271 (279)
T ss_pred             CCCC--------CCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHhC
Confidence            0000        1123456678889999999999999999999997754

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=3e-36  Score=305.26  Aligned_cols=242  Identities=21%  Similarity=0.335  Sum_probs=190.9

Q ss_pred             hhccccccCcceEEEEEeCC----CcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLDG----GDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~----~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ..+.||+|+||.||+|++..    ...||||.++...   ...++..|+.++++++||||+++++++...+..++||||+
T Consensus         8 ~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~   87 (266)
T cd05033           8 IEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMIITEYM   87 (266)
T ss_pred             eeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEEEEcC
Confidence            35789999999999998743    3579999887542   2456788999999999999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--  487 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--  487 (640)
                      ++|+|.+++....+    .+++..+.+++.|++.||+|||+   .+|+||||||+||++++++.+||+|||+++....  
T Consensus        88 ~~~~L~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~Lh~---~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~  160 (266)
T cd05033          88 ENGSLDKFLRENDG----KFTVGQLVGMLRGIASGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSE  160 (266)
T ss_pred             CCCCHHHHHHhccC----CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCCEEECccchhhcccccc
Confidence            99999999976432    58899999999999999999994   5699999999999999999999999999987641  


Q ss_pred             C------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhccccccccc
Q 006559          488 P------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVF  560 (640)
Q Consensus       488 ~------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  560 (640)
                      .      ...+..|+|||..       ....++.++||||||+++|||++ |..||.+...  ....+........    
T Consensus       161 ~~~~~~~~~~~~~y~~Pe~~-------~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~--~~~~~~~~~~~~~----  227 (266)
T cd05033         161 ATYTTKGGKIPIRWTAPEAI-------AYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSN--QDVIKAVEDGYRL----  227 (266)
T ss_pred             cceeccCCCCCccccChhhh-------ccCCCccccchHHHHHHHHHHHccCCCCCCCCCH--HHHHHHHHcCCCC----
Confidence            1      1124579999953       44567889999999999999998 9999864221  1111111111000    


Q ss_pred             chhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          561 DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       561 d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                          ...   ......+.+++.+||+.+|++||++.+|.+.|+++
T Consensus       228 ----~~~---~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         228 ----PPP---MDCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             ----CCC---CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence                000   12234577888999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=4e-36  Score=302.59  Aligned_cols=239  Identities=23%  Similarity=0.369  Sum_probs=189.4

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ..+.||+|+||.||++...++..+|+|.+... .....+.+|++++++++||||+++++++...+..++||||+++++|.
T Consensus         8 ~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   87 (256)
T cd05059           8 FLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLL   87 (256)
T ss_pred             hhhhhccCCCceEEEeEecCCccEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCCCCCHH
Confidence            35679999999999999887778999998754 33456888999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc------
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------  489 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~------  489 (640)
                      +++.....    .+++..++.++.|++.||+|||+   .+|+||||||+||++++++.+||+|||+++......      
T Consensus        88 ~~l~~~~~----~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~  160 (256)
T cd05059          88 NYLRERKG----KLGTEWLLDMCSDVCEAMEYLES---NGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQG  160 (256)
T ss_pred             HHHHhccc----CCCHHHHHHHHHHHHHHHHHHHH---CCcccccccHhhEEECCCCcEEECCcccceecccccccccCC
Confidence            99975432    57899999999999999999994   559999999999999999999999999987653321      


Q ss_pred             -cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          490 -FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       490 -~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                       ..+..|+|||++       ....++.++|||||||++|||+| |+.||......  +........      ....  .+
T Consensus       161 ~~~~~~y~~Pe~~-------~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~~~~~------~~~~--~~  223 (256)
T cd05059         161 TKFPVKWAPPEVF-------DYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNS--EVVESVSAG------YRLY--RP  223 (256)
T ss_pred             CCCCccccCHHHh-------ccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHH--HHHHHHHcC------CcCC--CC
Confidence             113469999964       34557789999999999999999 89998643211  111111111      0000  01


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMI  602 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L  602 (640)
                      .   ....++.+++.+||+.+|++||+|.|+++.|
T Consensus       224 ~---~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         224 K---LAPTEVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             C---CCCHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence            1   1234577889999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=2.6e-36  Score=308.70  Aligned_cols=252  Identities=22%  Similarity=0.325  Sum_probs=188.8

Q ss_pred             hccccccCcceEEEEEe-----CCCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcC--CeEEEEEe
Q 006559          338 AELLGKGCVGATYKVVL-----DGGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGK--DELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-----~~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lV~E  407 (640)
                      .+.||+|+||+||++.+     .++..||+|.++...   ....+.+|++++++++||||+++++++...  ...++|||
T Consensus         9 ~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e   88 (283)
T cd05080           9 IRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIME   88 (283)
T ss_pred             ceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEEEec
Confidence            46799999999988653     357789999987542   345678899999999999999999998753  46899999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      |+++|+|.+++...      .+++..+..++.|++.||+|||+   .+|+||||||+||++++++.+||+|||+++....
T Consensus        89 ~~~~~~l~~~~~~~------~l~~~~~~~i~~~l~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~  159 (283)
T cd05080          89 YVPLGSLRDYLPKH------KLNLAQLLLFAQQICEGMAYLHS---QHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPE  159 (283)
T ss_pred             CCCCCCHHHHHHHc------CCCHHHHHHHHHHHHHHHHHHHH---CCeeccccChheEEEcCCCcEEEeecccccccCC
Confidence            99999999999753      48999999999999999999994   5699999999999999999999999999876542


Q ss_pred             C---------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhh---cccc
Q 006559          488 P---------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMG---QDES  555 (640)
Q Consensus       488 ~---------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~---~~~~  555 (640)
                      .         ...+..|+|||..       ....++.++|||||||++|||+||+.|+...............   ....
T Consensus       160 ~~~~~~~~~~~~~~~~~~~PE~~-------~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  232 (283)
T cd05080         160 GHEYYRVREDGDSPVFWYAVECL-------KENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVR  232 (283)
T ss_pred             cchhhccCCCCCCCceeeCHhHh-------cccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhh
Confidence            1         1224468999954       3345778999999999999999999998643211111000000   0000


Q ss_pred             cccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          556 AWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       556 ~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                      ..+..+..... +.......++.+++..||+.+|++||++++++++|+++.
T Consensus       233 ~~~~~~~~~~~-~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         233 LIELLERGMRL-PCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             hhhhhhcCCCC-CCCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence            00001100000 001122356778889999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=2.6e-36  Score=311.96  Aligned_cols=249  Identities=20%  Similarity=0.314  Sum_probs=183.4

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||.||+|+.. +++.||||.++...   ....+.+|+++++.++||||+++++++...+..++||||++ ++
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-~~   88 (303)
T cd07869          10 LEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFEYVH-TD   88 (303)
T ss_pred             eeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEECCC-cC
Confidence            467999999999999965 68899999987542   23456789999999999999999999999999999999996 68


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------  487 (640)
                      |.+++....    ..+++..+..++.|++.||+|||+   .+|+||||||+|||+++++.+||+|||+++....      
T Consensus        89 l~~~~~~~~----~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~  161 (303)
T cd07869          89 LCQYMDKHP----GGLHPENVKLFLFQLLRGLSYIHQ---RYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYS  161 (303)
T ss_pred             HHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEECCCCcceeccCCCccCC
Confidence            888876543    247888899999999999999995   4599999999999999999999999999875431      


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc--hHHHHHHhhcc--ccccc-----
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG--IVKWVQMMGQD--ESAWE-----  558 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~--~~~~~~~~~~~--~~~~~-----  558 (640)
                      ...++..|+|||++.+      ...++.++||||+||++|||+||+.||.+....  ....+......  ...+.     
T Consensus       162 ~~~~~~~y~aPE~~~~------~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
T cd07869         162 NEVVTLWYRPPDVLLG------STEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSL  235 (303)
T ss_pred             CCcccCCCCChHHHcC------CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhccchhhc
Confidence            2345778999997532      234678899999999999999999999753211  11111110000  00000     


Q ss_pred             -ccchh---hccChHHHH------HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          559 -VFDFE---LIMDKEMEE------EMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       559 -~~d~~---~~~~~~~~~------~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       ..++.   ...+....+      ....+.+++..|++.||++|||+.|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~  287 (303)
T cd07869         236 PHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALS  287 (303)
T ss_pred             cccccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhc
Confidence             00000   000011111      1134667888899999999999999864

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=3.2e-36  Score=307.26  Aligned_cols=245  Identities=24%  Similarity=0.368  Sum_probs=191.1

Q ss_pred             hhccccccCcceEEEEEeCC------CcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVLDG------GDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~------~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||.||+|...+      +..||||.++...   ..+.+.+|++++++++|+||+++++++......++|||
T Consensus         9 ~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   88 (280)
T cd05049           9 LKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPIMVFE   88 (280)
T ss_pred             HHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeEEEEe
Confidence            45789999999999998643      4679999987652   34678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHhhccCCC---------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEcc
Q 006559          408 YLPHGSLHSLLHGSRG---------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISD  478 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~---------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~D  478 (640)
                      |+++|+|.+++.....         .....+++.....++.|++.||+|||.   .+++||||||+||+++.++.+||+|
T Consensus        89 ~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~---~~i~h~dlkp~nili~~~~~~kl~d  165 (280)
T cd05049          89 YMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLAS---QHFVHRDLATRNCLVGYDLVVKIGD  165 (280)
T ss_pred             cCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhh---CCeeccccccceEEEcCCCeEEECC
Confidence            9999999999975431         122357899999999999999999994   5699999999999999999999999


Q ss_pred             CCcccccCC--------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 006559          479 IGVHQLFHT--------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQM  549 (640)
Q Consensus       479 fGl~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~  549 (640)
                      ||+++....        ....+..|+|||++       ....++.++|||||||++|||++ |+.||......  +....
T Consensus       166 ~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~--~~~~~  236 (280)
T cd05049         166 FGMSRDVYTTDYYRVGGHTMLPIRWMPPESI-------MYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNE--EVIEC  236 (280)
T ss_pred             cccceecccCcceecCCCCcccceecChhhh-------ccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHH--HHHHH
Confidence            999875422        11225679999964       34557789999999999999999 99998643221  11111


Q ss_pred             hhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 006559          550 MGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIED  604 (640)
Q Consensus       550 ~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~  604 (640)
                      .... ....       ..   ......+.+++.+||+.+|++||++.||++.|++
T Consensus       237 ~~~~-~~~~-------~~---~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~~  280 (280)
T cd05049         237 ITQG-RLLQ-------RP---RTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQK  280 (280)
T ss_pred             HHcC-CcCC-------CC---CCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhhC
Confidence            1110 0000       00   1123457788889999999999999999998863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-37  Score=321.38  Aligned_cols=241  Identities=22%  Similarity=0.327  Sum_probs=194.3

Q ss_pred             hhccccccCcceEEEEEeCC--Cc--EEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLDG--GD--VVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~--~~--~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ..|+||+|.||+|++|.|..  |+  .||||+++..   ....+|.+|+.+|-+|+|+|+|+|+|+..+ ....||+|.+
T Consensus       114 l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~ELa  192 (1039)
T KOG0199|consen  114 LYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVFELA  192 (1039)
T ss_pred             HHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHhhhc
Confidence            46789999999999999753  44  4899999876   245679999999999999999999999986 7889999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-  488 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-  488 (640)
                      +.|+|.+.|++..   +..|-......++.|||.||+||.+   .++|||||.++|+||.....+||+||||.+.+... 
T Consensus       193 plGSLldrLrka~---~~~llv~~Lcdya~QiA~aM~YLes---krlvHRDLAARNlllasprtVKI~DFGLmRaLg~ne  266 (1039)
T KOG0199|consen  193 PLGSLLDRLRKAK---KAILLVSRLCDYAMQIAKAMQYLES---KRLVHRDLAARNLLLASPRTVKICDFGLMRALGENE  266 (1039)
T ss_pred             ccchHHHHHhhcc---ccceeHHHHHHHHHHHHHHHHHHhh---hhhhhhhhhhhhheecccceeeeecccceeccCCCC
Confidence            9999999999732   2357778888999999999999994   55999999999999999999999999999887531 


Q ss_pred             -c-------cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccc
Q 006559          489 -F-------FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       489 -~-------~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  559 (640)
                       +       .....|.|||       .+..++|+.++|||+|||++|||+| |+.||-+-.  -...++.+...+     
T Consensus       267 d~Yvm~p~rkvPfAWCaPE-------sLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~--g~qIL~~iD~~e-----  332 (1039)
T KOG0199|consen  267 DMYVMAPQRKVPFAWCAPE-------SLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCR--GIQILKNIDAGE-----  332 (1039)
T ss_pred             cceEecCCCcCcccccCHh-------HhccccccccchhhhhhhhHHhhhccCCCCCCCCC--HHHHHHhccccc-----
Confidence             1       2245788999       5778899999999999999999999 789986422  122222222111     


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIED  604 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~  604 (640)
                         .+..+   +.|.++++++|..||+.+|++||++..+.+.+-.
T Consensus       333 ---rLpRP---k~csedIY~imk~cWah~paDRptFsair~~~~l  371 (1039)
T KOG0199|consen  333 ---RLPRP---KYCSEDIYQIMKNCWAHNPADRPTFSAIREDLVL  371 (1039)
T ss_pred             ---cCCCC---CCChHHHHHHHHHhccCCccccccHHHHHHhHHH
Confidence               12222   3566789999999999999999999999754433

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.6e-37  Score=315.59  Aligned_cols=233  Identities=20%  Similarity=0.246  Sum_probs=184.4

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+.. +++.||+|.+...     ...+.+.+|+.++++++||||+++++++.+.+..++||||+++
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   85 (291)
T cd05612           6 IKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLMEYVPG   85 (291)
T ss_pred             eeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEeCCCC
Confidence            467999999999999965 6889999998643     1234577899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---  488 (640)
                      |+|.+++....     .+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++.....   
T Consensus        86 ~~L~~~~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~~~  157 (291)
T cd05612          86 GELFSYLRNSG-----RFSNSTGLFYASEIVCALEYLHS---KEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTWT  157 (291)
T ss_pred             CCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHeEECCCCCEEEEecCcchhccCCccc
Confidence            99999997543     57888999999999999999994   55999999999999999999999999998876432   


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..++..|+|||++.       ...++.++|||||||++|||+||+.||.....  ....+.....         ....+.
T Consensus       158 ~~gt~~y~aPE~~~-------~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~--~~~~~~i~~~---------~~~~~~  219 (291)
T cd05612         158 LCGTPEYLAPEVIQ-------SKGHNKAVDWWALGILIYEMLVGYPPFFDDNP--FGIYEKILAG---------KLEFPR  219 (291)
T ss_pred             ccCChhhcCHHHHc-------CCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhC---------CcCCCc
Confidence            34688999999753       34567899999999999999999999975322  1111111111         001111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCC-----HHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPN-----MSIVH  599 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs-----~~~v~  599 (640)
                      ..   ...+.+++.+||+.||++||+     +.++.
T Consensus       220 ~~---~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l  252 (291)
T cd05612         220 HL---DLYAKDLIKKLLVVDRTRRLGNMKNGADDVK  252 (291)
T ss_pred             cC---CHHHHHHHHHHcCCCHHHccCCccCCHHHHh
Confidence            11   224566778899999999995     66655

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=2.9e-36  Score=315.99  Aligned_cols=249  Identities=21%  Similarity=0.348  Sum_probs=189.4

Q ss_pred             hhccccccCcceEEEEEeC------CCcEEEEEEeccccc---hHHHHHHHHHHhcc-CCCcccceeEEEEcC-CeEEEE
Q 006559          337 SAELLGKGCVGATYKVVLD------GGDVVVVKRIRERKK---KREVDEWLRVIGGL-RHSNIVSIRAYCNGK-DELFLV  405 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~------~~~~vavK~l~~~~~---~~~~~~e~~~l~~l-~H~niv~l~~~~~~~-~~~~lV  405 (640)
                      ..++||+|+||.||+|+..      .++.||+|+++....   .+.+..|+.++.++ +|+||++++++|... ...++|
T Consensus        11 i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~~~~v   90 (337)
T cd05054          11 LGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGPLMVI   90 (337)
T ss_pred             hhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCCEEEE
Confidence            4678999999999999742      246899999875432   24466789999999 899999999988754 578999


Q ss_pred             EeccCCCCHHHhhccCCCC--------------------------------------------------------CCCCc
Q 006559          406 YDYLPHGSLHSLLHGSRGP--------------------------------------------------------GRMPV  429 (640)
Q Consensus       406 ~Ey~~~gsL~~~l~~~~~~--------------------------------------------------------~~~~l  429 (640)
                      |||+++|+|.+++......                                                        ...++
T Consensus        91 ~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (337)
T cd05054          91 VEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELYKEPL  170 (337)
T ss_pred             EecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHhhcCC
Confidence            9999999999998643210                                                        01268


Q ss_pred             CHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC--------ccccccccCCccc
Q 006559          430 DWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP--------FFINDAYNAPELK  501 (640)
Q Consensus       430 ~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~--------~~~~~~y~aPE~~  501 (640)
                      +|..+.+++.||+.||+|||+   .+|+||||||+|||++.++.+||+|||+++.+...        ...+..|+|||++
T Consensus       171 ~~~~~~~~~~qi~~aL~~lH~---~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~  247 (337)
T cd05054         171 TLEDLISYSFQVARGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESI  247 (337)
T ss_pred             CHHHHHHHHHHHHHHHHHHHh---CCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcHHh
Confidence            999999999999999999994   56999999999999999999999999999865321        1224579999964


Q ss_pred             cCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHHHHHHHHHH
Q 006559          502 FNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQV  580 (640)
Q Consensus       502 ~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l  580 (640)
                             ....++.++|||||||++|||++ |+.||........ ......... ..       ..+   .....++.++
T Consensus       248 -------~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~~-~~~~~~~~~-~~-------~~~---~~~~~~~~~l  308 (337)
T cd05054         248 -------FDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEE-FCRRLKEGT-RM-------RAP---EYATPEIYSI  308 (337)
T ss_pred             -------cCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccHH-HHHHHhccC-CC-------CCC---ccCCHHHHHH
Confidence                   34567889999999999999998 9999864322111 111111100 00       001   1223457788


Q ss_pred             HHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          581 ALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       581 ~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                      +.+||+.+|++||++.|+++.|+++..
T Consensus       309 ~~~cl~~~p~~RPs~~ell~~l~~~~~  335 (337)
T cd05054         309 MLDCWHNNPEDRPTFSELVEILGDLLQ  335 (337)
T ss_pred             HHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=3.4e-36  Score=315.12  Aligned_cols=189  Identities=22%  Similarity=0.323  Sum_probs=161.7

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ..+.||+|+||.||++... ++..+|+|.+....   ....+.+|++++++++||||++++++|...+..++||||+++|
T Consensus         9 ~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   88 (333)
T cd06650           9 KISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGG   88 (333)
T ss_pred             eeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEecCCCC
Confidence            3567999999999999965 57788999887542   2356788999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----C
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----P  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----~  488 (640)
                      +|.+++....     .+++.....++.|++.||.|||+.  .+|+||||||+|||++.++.+||+|||++.....    .
T Consensus        89 ~L~~~l~~~~-----~~~~~~~~~~~~~l~~~l~~lH~~--~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~  161 (333)
T cd06650          89 SLDQVLKKAG-----RIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANS  161 (333)
T ss_pred             cHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHhc--CCEEecCCChhhEEEcCCCCEEEeeCCcchhhhhhcccc
Confidence            9999997543     478888999999999999999952  3599999999999999999999999999876532    2


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG  539 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~  539 (640)
                      ..++..|+|||++       ....++.++|||||||++|||++|+.||...
T Consensus       162 ~~~~~~y~aPE~~-------~~~~~~~~~DvwslG~il~~l~~g~~p~~~~  205 (333)
T cd06650         162 FVGTRSYMSPERL-------QGTHYSVQSDIWSMGLSLVEMAIGRYPIPPP  205 (333)
T ss_pred             CCCCccccCHHHh-------cCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            3467899999965       3345678999999999999999999999743

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-36  Score=318.36  Aligned_cols=243  Identities=16%  Similarity=0.221  Sum_probs=188.4

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+.. +++.||||+++...     ..+.+..|++++..++||||+++++++...+..|+||||+++
T Consensus         6 ~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~g   85 (333)
T cd05600           6 LTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAMEYVPG   85 (333)
T ss_pred             EEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEeCCCC
Confidence            567999999999999965 57899999987541     234577899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---C
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---P  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---~  488 (640)
                      |+|.+++....     .+++.....++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+++....   .
T Consensus        86 ~~L~~~l~~~~-----~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~~~~~  157 (333)
T cd05600          86 GDFRTLLNNLG-----VLSEDHARFYMAEMFEAVDALHE---LGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVTYANS  157 (333)
T ss_pred             CCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEECCCCCEEEEeCcCCcccccccCC
Confidence            99999997543     47888999999999999999994   5599999999999999999999999999876543   3


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..++..|+|||++       ....++.++|||||||++|||++|+.||......  +..........   .........+
T Consensus       158 ~~gt~~y~aPE~~-------~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~--~~~~~i~~~~~---~~~~~~~~~~  225 (333)
T cd05600         158 VVGSPDYMAPEVL-------RGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPN--ETWENLKYWKE---TLQRPVYDDP  225 (333)
T ss_pred             cccCccccChhHh-------cCCCCCCccceecchHHHhhhhhCCCCCCCCCHH--HHHHHHHhccc---cccCCCCCcc
Confidence            4568899999965       3346778999999999999999999999753321  11111110000   0000000000


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                       ......++.+++.+|+..+|++||++.++++.
T Consensus       226 -~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h  257 (333)
T cd05600         226 -RFNLSDEAWDLITKLINDPSRRFGSLEDIKNH  257 (333)
T ss_pred             -ccccCHHHHHHHHHHhhChhhhcCCHHHHHhC
Confidence             01123346677778999999999999999853

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=6.5e-37  Score=320.04  Aligned_cols=233  Identities=17%  Similarity=0.258  Sum_probs=184.5

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+.. +++.||||.+...     ...+.+.+|+.++++++||||+++++++...+..|+||||+++
T Consensus        23 ~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  102 (329)
T PTZ00263         23 GETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLLEFVVG  102 (329)
T ss_pred             EEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEEcCCCC
Confidence            568999999999999965 5788999998754     1234577899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---  488 (640)
                      |+|.+++....     .+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++.....   
T Consensus       103 ~~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~  174 (329)
T PTZ00263        103 GELFTHLRKAG-----RFPNDVAKFYHAELVLAFEYLHS---KDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRTFT  174 (329)
T ss_pred             ChHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHEEECCCCCEEEeeccCceEcCCCcce
Confidence            99999997543     47788888999999999999995   55999999999999999999999999999876432   


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..++..|+|||++       ....++.++|||||||++|||+||+.||.+...  .+..+.....         ....+.
T Consensus       175 ~~gt~~y~aPE~~-------~~~~~~~~~DiwslG~il~elltg~~pf~~~~~--~~~~~~i~~~---------~~~~p~  236 (329)
T PTZ00263        175 LCGTPEYLAPEVI-------QSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTP--FRIYEKILAG---------RLKFPN  236 (329)
T ss_pred             ecCChhhcCHHHH-------cCCCCCCcceeechHHHHHHHHcCCCCCCCCCH--HHHHHHHhcC---------CcCCCC
Confidence            3468889999965       334567899999999999999999999975321  1111111111         000111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCC-----HHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPN-----MSIVH  599 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs-----~~~v~  599 (640)
                      ..+   .++.+++..||+.||++||+     +.+++
T Consensus       237 ~~~---~~~~~li~~~L~~dP~~R~~~~~~~~~~ll  269 (329)
T PTZ00263        237 WFD---GRARDLVKGLLQTDHTKRLGTLKGGVADVK  269 (329)
T ss_pred             CCC---HHHHHHHHHHhhcCHHHcCCCCCCCHHHHh
Confidence            111   23567788899999999997     56665

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=2.4e-36  Score=304.37  Aligned_cols=237  Identities=22%  Similarity=0.334  Sum_probs=185.2

Q ss_pred             cccccCcceEEEEEe---CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          340 LLGKGCVGATYKVVL---DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~---~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .||+|+||.||+|.+   .++..+|+|.++...    ..+++..|+.++++++||||+++++++. .+..++||||+++|
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~~~   80 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAELG   80 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCCCC
Confidence            589999999999975   356789999986442    2456788899999999999999999885 45779999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc---
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF---  489 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~---  489 (640)
                      +|.+++....     .+++.....++.|++.||+|||   ..+|+||||||+||+++.++.+||+|||+++......   
T Consensus        81 ~L~~~l~~~~-----~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~  152 (257)
T cd05116          81 PLNKFLQKNK-----HVTEKNITELVHQVSMGMKYLE---ETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYY  152 (257)
T ss_pred             cHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCEeecccchhhEEEcCCCeEEECCCccccccCCCCCee
Confidence            9999997543     5789999999999999999999   4569999999999999999999999999987654221   


Q ss_pred             ------cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccch
Q 006559          490 ------FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       490 ------~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                            ..+..|+|||.+       ....++.++|||||||++|||+| |+.||.....  ..+.+....... .   + 
T Consensus       153 ~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~--~~~~~~i~~~~~-~---~-  218 (257)
T cd05116         153 KAKTHGKWPVKWYAPECM-------NYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKG--NEVTQMIESGER-M---E-  218 (257)
T ss_pred             eecCCCCCCccccCHhHh-------ccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHCCCC-C---C-
Confidence                  113579999954       33456779999999999999998 9999975322  222222221110 0   0 


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                         .+.   ....++.+++.+||+.||++||+|.+|++.|++.
T Consensus       219 ---~~~---~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~~  255 (257)
T cd05116         219 ---CPQ---RCPPEMYDLMKLCWTYGVDERPGFAVVELRLRNY  255 (257)
T ss_pred             ---CCC---CCCHHHHHHHHHHhccCchhCcCHHHHHHHHhcc
Confidence               111   1223466788889999999999999999999864

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=3.6e-36  Score=308.80  Aligned_cols=248  Identities=24%  Similarity=0.366  Sum_probs=191.3

Q ss_pred             hccccccCcceEEEEEeC------CCcEEEEEEeccccc---hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVLD------GGDVVVVKRIRERKK---KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~------~~~~vavK~l~~~~~---~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      .+.||+|+||.||+|+..      +...+++|.+.....   .+.+..|+.+++.++||||+++++.+...+..++|+||
T Consensus         5 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   84 (290)
T cd05045           5 GKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLIVEY   84 (290)
T ss_pred             cccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEEEEEe
Confidence            467999999999999853      235688888875432   34577899999999999999999999999999999999


Q ss_pred             cCCCCHHHhhccCCC-------------------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC
Q 006559          409 LPHGSLHSLLHGSRG-------------------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD  469 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~-------------------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~  469 (640)
                      +++|+|.+++.....                   ....++++..++.++.|++.||+|||   ..+|+||||||+|||++
T Consensus        85 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH---~~~ivH~dikp~nill~  161 (290)
T cd05045          85 AKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLA---EMKLVHRDLAARNVLVA  161 (290)
T ss_pred             cCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHH---HCCeehhhhhhheEEEc
Confidence            999999999864321                   11235889999999999999999999   45699999999999999


Q ss_pred             CCCCeEEccCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 006559          470 QLGNACISDIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGE  540 (640)
Q Consensus       470 ~~~~~kl~DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~  540 (640)
                      +++.+||+|||+++.....        ...+..|+|||..       ....++.++|||||||++|||+| |+.||....
T Consensus       162 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~-------~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~  234 (290)
T cd05045         162 EGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESL-------FDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIA  234 (290)
T ss_pred             CCCcEEeccccccccccCccchhcccCCCCCccccCHHHH-------ccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCC
Confidence            9999999999998754221        1234579999954       34457789999999999999999 999986432


Q ss_pred             cchHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          541 LGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                        ..+.........      ...  .+   .....++.+++..||+.+|++||++.++++.|+++..+
T Consensus       235 --~~~~~~~~~~~~------~~~--~~---~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~~~  289 (290)
T cd05045         235 --PERLFNLLKTGY------RME--RP---ENCSEEMYNLMLTCWKQEPDKRPTFADISKELEKMMVK  289 (290)
T ss_pred             --HHHHHHHHhCCC------CCC--CC---CCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHHHHhc
Confidence              112222111110      000  01   11223577788899999999999999999999998653

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-37  Score=301.95  Aligned_cols=258  Identities=19%  Similarity=0.336  Sum_probs=193.7

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEc-----CCeEEEEEe
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNG-----KDELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~-----~~~~~lV~E  407 (640)
                      .+.||+|+||.|..+.. .+|+.||||++...    ...+...+|+++|+.++|+||+.+++.+..     -...|+|+|
T Consensus        27 ~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvYiV~e  106 (359)
T KOG0660|consen   27 IEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVYLVFE  106 (359)
T ss_pred             cccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccceeEEehh
Confidence            46799999999999984 56899999998743    334566789999999999999999999876     247999999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC-
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-  486 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~-  486 (640)
                      +|+ -+|+..++...     .++......+..|+.+||.|+|+.+   |+||||||+|+|++.+...||+|||+|+... 
T Consensus       107 lMe-tDL~~iik~~~-----~L~d~H~q~f~YQiLrgLKyiHSAn---ViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~  177 (359)
T KOG0660|consen  107 LME-TDLHQIIKSQQ-----DLTDDHAQYFLYQILRGLKYIHSAN---VIHRDLKPSNLLLNADCDLKICDFGLARYLDK  177 (359)
T ss_pred             HHh-hHHHHHHHcCc-----cccHHHHHHHHHHHHHhcchhhccc---ccccccchhheeeccCCCEEeccccceeeccc
Confidence            995 49999998653     4788888889999999999999655   9999999999999999999999999999884 


Q ss_pred             -------CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC-cchHHHH-HHhhccc-c-
Q 006559          487 -------TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGE-LGIVKWV-QMMGQDE-S-  555 (640)
Q Consensus       487 -------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~-~~~~~~~-~~~~~~~-~-  555 (640)
                             +.++.|.+|+|||++      .....||...||||.||++.||++|++-|.+.+ .+....+ ...+... . 
T Consensus       178 ~~~~~~mTeYVaTRWYRAPEll------l~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~  251 (359)
T KOG0660|consen  178 FFEDGFMTEYVATRWYRAPELL------LNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEED  251 (359)
T ss_pred             cCcccchhcceeeeeecCHHHH------hccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHH
Confidence                   345679999999986      345678899999999999999999999887532 2222222 1222110 0 


Q ss_pred             ccccc--------c-hhhccCh----HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhhccCC
Q 006559          556 AWEVF--------D-FELIMDK----EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDIRTKGS  610 (640)
Q Consensus       556 ~~~~~--------d-~~~~~~~----~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i~~~~~  610 (640)
                      ...+-        . .......    -.+..-...+++.-+++..||.+|+|++|+++  .|.......-
T Consensus       252 l~~i~s~~ar~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~hPYl~~~hdp~d  321 (359)
T KOG0660|consen  252 LQKIRSEKARPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALAHPYLAPYHDPED  321 (359)
T ss_pred             HHHhccHHHHHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhcChhhhhhcCCcc
Confidence            00000        0 0000000    01122235677777899999999999999864  6666654433

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=4.5e-36  Score=308.27  Aligned_cols=248  Identities=23%  Similarity=0.390  Sum_probs=192.9

Q ss_pred             hccccccCcceEEEEEeC------CCcEEEEEEecccc--chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVLD------GGDVVVVKRIRERK--KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~------~~~~vavK~l~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .+.||+|+||.||+|+..      ++..+++|.+....  ..+.+.+|++++++++|+||+++++++...+..++||||+
T Consensus        10 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   89 (291)
T cd05094          10 KRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYM   89 (291)
T ss_pred             eeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEEEEecC
Confidence            467999999999999743      34568899887653  3356888999999999999999999999999999999999


Q ss_pred             CCCCHHHhhccCCC-----------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEcc
Q 006559          410 PHGSLHSLLHGSRG-----------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISD  478 (640)
Q Consensus       410 ~~gsL~~~l~~~~~-----------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~D  478 (640)
                      ++++|.+++.....           .....++|..++.++.|++.||+|||   ..+|+||||||+||+++.++.+||+|
T Consensus        90 ~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~d  166 (291)
T cd05094          90 KHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLA---SQHFVHRDLATRNCLVGANLLVKIGD  166 (291)
T ss_pred             CCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccCcceEEEccCCcEEECC
Confidence            99999999975421           01124789999999999999999999   45699999999999999999999999


Q ss_pred             CCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 006559          479 IGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQM  549 (640)
Q Consensus       479 fGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~  549 (640)
                      ||+++.....        ...+..|+|||.+       ....++.++|||||||++|||+| |+.||......  ...+.
T Consensus       167 fg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~--~~~~~  237 (291)
T cd05094         167 FGMSRDVYSTDYYRVGGHTMLPIRWMPPESI-------MYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNT--EVIEC  237 (291)
T ss_pred             CCcccccCCCceeecCCCCCcceeecChHHh-------ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHH
Confidence            9998754321        2235679999954       34567789999999999999999 99998643221  11111


Q ss_pred             hhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          550 MGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       550 ~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ..... ...       ..   ......+.+++.+||+.+|++||++.+|.++|+++...
T Consensus       238 ~~~~~-~~~-------~~---~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~~  285 (291)
T cd05094         238 ITQGR-VLE-------RP---RVCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALGKA  285 (291)
T ss_pred             HhCCC-CCC-------CC---ccCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHhh
Confidence            11110 000       00   11234577888899999999999999999999999653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=3.6e-36  Score=308.52  Aligned_cols=249  Identities=18%  Similarity=0.281  Sum_probs=184.5

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||.||+|+.. ++..||+|.++..   .....+.+|++++++++||||+++++++...+..++||||++ |+
T Consensus        10 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-~~   88 (288)
T cd07871          10 LDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEYLD-SD   88 (288)
T ss_pred             eeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeCCC-cC
Confidence            467999999999999864 6788999998744   223456789999999999999999999999999999999997 59


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------  487 (640)
                      |.+++....    ..+++..+..++.|++.||+|||+   .+|+||||||+|||+++++.+||+|||+++....      
T Consensus        89 l~~~l~~~~----~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~~~~  161 (288)
T cd07871          89 LKQYLDNCG----NLMSMHNVKIFMFQLLRGLSYCHK---RKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYS  161 (288)
T ss_pred             HHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEECcCcceeeccCCCcccc
Confidence            999886543    246888999999999999999994   5699999999999999999999999999876432      


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHH-HHHHhhcc-cccccc-----
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVK-WVQMMGQD-ESAWEV-----  559 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~-~~~~~~~~-~~~~~~-----  559 (640)
                      ...++..|+|||++.      ....++.++||||+||++|||+||+.||...... ... ..+..... ...+..     
T Consensus       162 ~~~~~~~y~aPE~~~------~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (288)
T cd07871         162 NEVVTLWYRPPDVLL------GSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNE  235 (288)
T ss_pred             CceecccccChHHhc------CCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhccccch
Confidence            224577899999753      2245678999999999999999999999753321 111 11111110 000000     


Q ss_pred             -----cchhhccCh---HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 -----FDFELIMDK---EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 -----~d~~~~~~~---~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                           ..+.....+   .......+..+++.+|+..||++|||+.|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~  284 (288)
T cd07871         236 EFRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALR  284 (288)
T ss_pred             hhhccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence                 000000000   00011234677888899999999999999864

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=2.8e-36  Score=304.43  Aligned_cols=242  Identities=22%  Similarity=0.424  Sum_probs=194.3

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEecccc--chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERK--KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ..++||+|+||.||+|...++..+++|.+....  ...++..|+++++.++|+||+++++++...+..++||||+++|+|
T Consensus        10 ~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   89 (261)
T cd05148          10 LERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGSL   89 (261)
T ss_pred             HhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEeecccCCH
Confidence            467899999999999998889999999987653  356788899999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc-----
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF-----  489 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~-----  489 (640)
                      .++++...+   ..+++..+.+++.|++.||+|||+   .+|+||||||+||++++++.+||+|||++.......     
T Consensus        90 ~~~~~~~~~---~~~~~~~~~~~~~~i~~al~~lH~---~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~~~~  163 (261)
T cd05148          90 LAFLRSPEG---QVLPVASLIDMACQVAEGMAYLEE---QNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSD  163 (261)
T ss_pred             HHHHhcCCC---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccCcceEEEcCCceEEEccccchhhcCCccccccC
Confidence            999976432   257899999999999999999994   559999999999999999999999999987654321     


Q ss_pred             -cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCc-chHHHHHHhhcccccccccchhhcc
Q 006559          490 -FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGEL-GIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       490 -~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                       ..+..|+|||..       ....++.++|||||||++|||++ |+.||..... .......   ...      .  ...
T Consensus       164 ~~~~~~~~~PE~~-------~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~~~~~~~~---~~~------~--~~~  225 (261)
T cd05148         164 KKIPYKWTAPEAA-------SHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYDQIT---AGY------R--MPC  225 (261)
T ss_pred             CCCceEecCHHHH-------ccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHH---hCC------c--CCC
Confidence             224579999964       34456789999999999999998 8999864321 1111111   110      0  000


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                      .   ......+.+++.+||+.+|++|||+.++.+.|+.+
T Consensus       226 ~---~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~~  261 (261)
T cd05148         226 P---AKCPQEIYKIMLECWAAEPEDRPSFKALREELDNI  261 (261)
T ss_pred             C---CCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhcC
Confidence            1   12234567888899999999999999999999864

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=1.3e-36  Score=317.10  Aligned_cols=233  Identities=20%  Similarity=0.286  Sum_probs=182.0

Q ss_pred             ccccccCcceEEEEEe----CCCcEEEEEEecccc------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          339 ELLGKGCVGATYKVVL----DGGDVVVVKRIRERK------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~----~~~~~vavK~l~~~~------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      +.||+|+||.||+++.    ..++.||||.++...      ....+..|+++++.++||||+++++++..++..|+||||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            4699999999999985    357789999987531      223467889999999999999999999999999999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-  487 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-  487 (640)
                      +++|+|.+++....     .+.+.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++.... 
T Consensus        82 ~~~~~L~~~~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  153 (323)
T cd05584          82 LSGGELFMHLEREG-----IFMEDTACFYLSEISLALEHLHQ---QGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHE  153 (323)
T ss_pred             CCCchHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCCEEEeeCcCCeecccC
Confidence            99999999987543     46778888899999999999995   4599999999999999999999999999875321 


Q ss_pred             -----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccch
Q 006559          488 -----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       488 -----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                           ...++..|+|||++.       ...++.++|||||||++|||++|+.||.....  ..........         
T Consensus       154 ~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~DiwslG~il~ell~G~~pf~~~~~--~~~~~~~~~~---------  215 (323)
T cd05584         154 GTVTHTFCGTIEYMAPEILM-------RSGHGKAVDWWSLGALMYDMLTGAPPFTAENR--KKTIDKILKG---------  215 (323)
T ss_pred             CCcccccCCCccccChhhcc-------CCCCCCcceecccHHHHHHHhcCCCCCCCCCH--HHHHHHHHcC---------
Confidence                 234678999999653       34467899999999999999999999975432  1111111111         


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRP-----NMSIVHR  600 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RP-----s~~~v~~  600 (640)
                      ....+...   ..++.+++.+||+.+|++||     ++.++.+
T Consensus       216 ~~~~~~~~---~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~  255 (323)
T cd05584         216 KLNLPPYL---TPEARDLLKKLLKRNPSSRLGAGPGDAAEVQS  255 (323)
T ss_pred             CCCCCCCC---CHHHHHHHHHHcccCHhHcCCCCCCCHHHHhc
Confidence            11111111   23456777889999999999     6777654

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=4.8e-36  Score=304.66  Aligned_cols=245  Identities=23%  Similarity=0.351  Sum_probs=185.9

Q ss_pred             hccccccCcceEEEEEeCCCc---EEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcC------CeEEE
Q 006559          338 AELLGKGCVGATYKVVLDGGD---VVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGK------DELFL  404 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~---~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------~~~~l  404 (640)
                      .++||+|+||.||+|+..+..   .||+|.++..    ...+.+..|+++++.++|+||+++++++...      ...++
T Consensus         4 ~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~   83 (272)
T cd05075           4 GKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPVV   83 (272)
T ss_pred             ccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCcEE
Confidence            567999999999999975432   5899988654    2235577889999999999999999987532      25789


Q ss_pred             EEeccCCCCHHHhhccCC-CCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccc
Q 006559          405 VYDYLPHGSLHSLLHGSR-GPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ  483 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~-~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~  483 (640)
                      ||||+++|+|.+++...+ ......+++.....++.|++.||+|||+   .+|+||||||+|||+++++.+||+|||+++
T Consensus        84 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  160 (272)
T cd05075          84 ILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSS---KSFIHRDLAARNCMLNENMNVCVADFGLSK  160 (272)
T ss_pred             EEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHH---CCeeccccchhheEEcCCCCEEECCCCccc
Confidence            999999999999874332 1122358899999999999999999994   569999999999999999999999999988


Q ss_pred             ccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhccc
Q 006559          484 LFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDE  554 (640)
Q Consensus       484 ~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~  554 (640)
                      .....        ...+..|++||..       ....++.++|||||||++|||++ |+.||.....  ...........
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~pe~~-------~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~--~~~~~~~~~~~  231 (272)
T cd05075         161 KIYNGDYYRQGRIAKMPVKWIAIESL-------ADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVEN--SEIYDYLRQGN  231 (272)
T ss_pred             ccCcccceecCCcccCCcccCCHHHc-------cCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCH--HHHHHHHHcCC
Confidence            75321        1234578999953       44567889999999999999999 7889864321  12112111111


Q ss_pred             ccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          555 SAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       555 ~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                      ..        ....   .....+.+++.+||+.+|++|||+.++.+.|+++
T Consensus       232 ~~--------~~~~---~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         232 RL--------KQPP---DCLDGLYSLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             CC--------CCCC---CCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            10        0011   1233467888899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=4.5e-36  Score=300.89  Aligned_cols=238  Identities=24%  Similarity=0.368  Sum_probs=188.3

Q ss_pred             ccccccCcceEEEEEeCCCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ++||+|+||.||+|...++..+|+|.+....   ....+.+|++++++++||||+++++++...+..++||||+++|+|.
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   80 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFL   80 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHH
Confidence            3699999999999998888999999987552   2345778999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-------
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-------  488 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-------  488 (640)
                      +++....    ..+++..+..++.|++.||.|+|   ..+++||||||+||+++.++.+||+|||++......       
T Consensus        81 ~~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH---~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~  153 (250)
T cd05085          81 SFLRKKK----DELKTKQLVKFALDAAAGMAYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGL  153 (250)
T ss_pred             HHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccChheEEEcCCCeEEECCCccceeccccccccCCC
Confidence            9987543    24789999999999999999999   456999999999999999999999999998754321       


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      ...+..|+|||+.       ....++.++|||||||++||+++ |..||......  ...........      ..  ..
T Consensus       154 ~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~--~~~~~~~~~~~------~~--~~  216 (250)
T cd05085         154 KQIPIKWTAPEAL-------NYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQ--QAREQVEKGYR------MS--CP  216 (250)
T ss_pred             CCCcccccCHHHh-------ccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHH--HHHHHHHcCCC------CC--CC
Confidence            1224569999964       34457789999999999999999 99998643211  11111111100      00  01


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIE  603 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~  603 (640)
                         .....++.+++.+|++.+|++||++.|+.+.|.
T Consensus       217 ---~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         217 ---QKCPDDVYKVMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             ---CCCCHHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence               112345778888999999999999999998874

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=7.6e-36  Score=305.24  Aligned_cols=244  Identities=23%  Similarity=0.375  Sum_probs=187.7

Q ss_pred             hccccccCcceEEEEEe-----CCCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVL-----DGGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-----~~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .+.||+|+||.||+|+.     ..+..|++|.++...   ....+.+|++++++++||||+++++++...+..|+||||+
T Consensus        10 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~   89 (283)
T cd05090          10 MEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCMLFEYL   89 (283)
T ss_pred             eeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEEEEEcC
Confidence            56799999999999984     345789999987542   2356788999999999999999999999999999999999


Q ss_pred             CCCCHHHhhccCCC------------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEc
Q 006559          410 PHGSLHSLLHGSRG------------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACIS  477 (640)
Q Consensus       410 ~~gsL~~~l~~~~~------------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~  477 (640)
                      ++|+|.+++.....            .....+++...+.++.|++.||+|||+   .+|+||||||+|||+++++.+||+
T Consensus        90 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~---~~i~H~dlkp~nili~~~~~~kl~  166 (283)
T cd05090          90 NQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSS---HFFVHKDLAARNILIGEQLHVKIS  166 (283)
T ss_pred             CCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHh---cCeehhccccceEEEcCCCcEEec
Confidence            99999999853321            112357889999999999999999994   569999999999999999999999


Q ss_pred             cCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHH
Q 006559          478 DIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQ  548 (640)
Q Consensus       478 DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~  548 (640)
                      |||+++.....        ...+..|+|||.+       ....++.++|||||||++|||+| |..||.....  ....+
T Consensus       167 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~--~~~~~  237 (283)
T cd05090         167 DLGLSREIYSADYYRVQPKSLLPIRWMPPEAI-------MYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSN--QEVIE  237 (283)
T ss_pred             cccccccccCCcceecccCCCccceecChHHh-------ccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCH--HHHHH
Confidence            99998765321        2224569999964       33457789999999999999999 9999864321  11111


Q ss_pred             HhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 006559          549 MMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIED  604 (640)
Q Consensus       549 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~  604 (640)
                      .......        .....   ....++.+++.+||+.+|++||++.++.+.|..
T Consensus       238 ~~~~~~~--------~~~~~---~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05090         238 MVRKRQL--------LPCSE---DCPPRMYSLMTECWQEGPSRRPRFKDIHTRLRS  282 (283)
T ss_pred             HHHcCCc--------CCCCC---CCCHHHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence            1111110        00111   122346677888999999999999999998864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.7e-37  Score=285.19  Aligned_cols=237  Identities=20%  Similarity=0.288  Sum_probs=190.8

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..+.||+|.||.||.|+.+ ++-.||+|++.+.     ...+++.+|+++-..|+||||++++++|.+....||++||.+
T Consensus        26 igr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLilEya~  105 (281)
T KOG0580|consen   26 IGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLILEYAP  105 (281)
T ss_pred             ccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEEEEecC
Confidence            4678999999999999964 5778999998755     345778899999999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC----
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH----  486 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~----  486 (640)
                      +|++...|.+.+.   ..++......++.|+|.||.|+|   .++||||||||+|+|++..+..|++|||-+-.-.    
T Consensus       106 ~gel~k~L~~~~~---~~f~e~~~a~Yi~q~A~Al~y~h---~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~~kR  179 (281)
T KOG0580|consen  106 RGELYKDLQEGRM---KRFDEQRAATYIKQLANALLYCH---LKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSNKR  179 (281)
T ss_pred             CchHHHHHHhccc---ccccccchhHHHHHHHHHHHHhc---cCCcccCCCCHHHhccCCCCCeeccCCCceeecCCCCc
Confidence            9999999985542   24777778889999999999999   5669999999999999999999999999876542    


Q ss_pred             CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          487 TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       487 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                      ...++|.-|.+||+       .....++.++|+|++||+.||++.|.+||.....+ ..+          .++....+..
T Consensus       180 ~tlcgt~dyl~pEm-------v~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~-etY----------krI~k~~~~~  241 (281)
T KOG0580|consen  180 KTLCGTLDYLPPEM-------VEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHS-ETY----------KRIRKVDLKF  241 (281)
T ss_pred             eeeecccccCCHhh-------cCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhH-HHH----------HHHHHccccC
Confidence            23567899999996       45566778999999999999999999999754311 111          1111112222


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      +.....   ...+++.+|+..+|.+|.+..||+.
T Consensus       242 p~~is~---~a~dlI~~ll~~~p~~r~~l~~v~~  272 (281)
T KOG0580|consen  242 PSTISG---GAADLISRLLVKNPIERLALTEVMD  272 (281)
T ss_pred             CcccCh---hHHHHHHHHhccCccccccHHHHhh
Confidence            222333   3556777899999999999998865

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=9.9e-37  Score=319.66  Aligned_cols=234  Identities=18%  Similarity=0.225  Sum_probs=184.0

Q ss_pred             hccccccCcceEEEEEeCC--CcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLDG--GDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~--~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      .+.||+|+||.||+|+..+  +..||+|.+...     ...+.+.+|+++++.++||||+++++++...+..|+||||++
T Consensus        35 ~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~Ey~~  114 (340)
T PTZ00426         35 IRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLVLEFVI  114 (340)
T ss_pred             EEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEEEEeCCC
Confidence            5679999999999998543  358999998643     223456789999999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                      +|+|.+++....     .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....   
T Consensus       115 ~g~L~~~i~~~~-----~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~~~  186 (340)
T PTZ00426        115 GGEFFTFLRRNK-----RFPNDVGCFYAAQIVLIFEYLQS---LNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTRTY  186 (340)
T ss_pred             CCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeEccCCCHHHEEECCCCCEEEecCCCCeecCCCcc
Confidence            999999997543     47888999999999999999994   5699999999999999999999999999987643   


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      ...+|..|+|||++.       ...++.++|||||||++|||+||+.||.......  ..+.....         ....+
T Consensus       187 ~~~gt~~y~aPE~~~-------~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~--~~~~i~~~---------~~~~p  248 (340)
T PTZ00426        187 TLCGTPEYIAPEILL-------NVGHGKAADWWTLGIFIYEILVGCPPFYANEPLL--IYQKILEG---------IIYFP  248 (340)
T ss_pred             eecCChhhcCHHHHh-------CCCCCccccccchhhHHHHHhcCCCCCCCCCHHH--HHHHHhcC---------CCCCC
Confidence            234688999999753       3456789999999999999999999997543211  11111111         01111


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRP-----NMSIVHR  600 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RP-----s~~~v~~  600 (640)
                      .....   .+.+++.+|++.||++|+     +++++.+
T Consensus       249 ~~~~~---~~~~li~~~l~~dp~~R~~~~~~~~~~~~~  283 (340)
T PTZ00426        249 KFLDN---NCKHLMKKLLSHDLTKRYGNLKKGAQNVKE  283 (340)
T ss_pred             CCCCH---HHHHHHHHHcccCHHHcCCCCCCCHHHHHc
Confidence            11222   345677789999999995     7777754

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=3.7e-36  Score=306.12  Aligned_cols=235  Identities=23%  Similarity=0.316  Sum_probs=179.0

Q ss_pred             cccccCcceEEEEEeCC-------------------------CcEEEEEEecccc--chHHHHHHHHHHhccCCCcccce
Q 006559          340 LLGKGCVGATYKVVLDG-------------------------GDVVVVKRIRERK--KKREVDEWLRVIGGLRHSNIVSI  392 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~~-------------------------~~~vavK~l~~~~--~~~~~~~e~~~l~~l~H~niv~l  392 (640)
                      .||+|+||.||+|++..                         ...|++|.+....  ...++.+|+.+++.++||||+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            58999999999997521                         1248888886542  23567788899999999999999


Q ss_pred             eEEEEcCCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC
Q 006559          393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG  472 (640)
Q Consensus       393 ~~~~~~~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~  472 (640)
                      +++|...+..++||||+++|+|..++....+    .+++..++.++.|+++||+|||   ..+|+||||||+|||++..+
T Consensus        82 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~----~~~~~~~~~i~~qi~~~l~~lH---~~~iiH~dlkp~Nill~~~~  154 (274)
T cd05076          82 HGVCVRGSENIMVEEFVEHGPLDVCLRKEKG----RVPVAWKITVAQQLASALSYLE---DKNLVHGNVCAKNILLARLG  154 (274)
T ss_pred             EEEEEeCCceEEEEecCCCCcHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---cCCccCCCCCcccEEEeccC
Confidence            9999999999999999999999999875332    4788889999999999999999   45699999999999998644


Q ss_pred             -------CeEEccCCcccccCC--CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHH-hCCCCCCCCCcc
Q 006559          473 -------NACISDIGVHQLFHT--PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEIL-TGKMAKGDGELG  542 (640)
Q Consensus       473 -------~~kl~DfGl~~~~~~--~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~-tg~~p~~~~~~~  542 (640)
                             .+|++|||++.....  ....+..|+|||.+..      ...++.++|||||||++|||+ +|+.||......
T Consensus       155 ~~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~aPe~~~~------~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~  228 (274)
T cd05076         155 LAEGTSPFIKLSDPGVSFTALSREERVERIPWIAPECVPG------GNSLSTAADKWSFGTTLLEICFDGEVPLKERTPS  228 (274)
T ss_pred             cccCccceeeecCCccccccccccccccCCcccCchhhcC------CCCCCcHHHHHHHHHHHHHHHhCCCCCccccChH
Confidence                   379999998765432  2334678999996422      245678999999999999995 699998643221


Q ss_pred             hHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 006559          543 IVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMI  602 (640)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L  602 (640)
                      .....  ...          .......   ...++.+++.+||+.+|++||+|.+|++.|
T Consensus       229 ~~~~~--~~~----------~~~~~~~---~~~~~~~li~~cl~~~p~~Rps~~~il~~L  273 (274)
T cd05076         229 EKERF--YEK----------KHRLPEP---SCKELATLISQCLTYEPTQRPSFRTILRDL  273 (274)
T ss_pred             HHHHH--HHh----------ccCCCCC---CChHHHHHHHHHcccChhhCcCHHHHHHhh
Confidence            11111  000          0000010   113467788899999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=2.9e-36  Score=316.41  Aligned_cols=249  Identities=21%  Similarity=0.326  Sum_probs=182.8

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcC-----CeEEEEEe
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGK-----DELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~-----~~~~lV~E  407 (640)
                      .++||+|+||.||+|+. .++..||||++...    .....+.+|++++++++||||+++++++...     ...|+|||
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~lv~e   84 (338)
T cd07859           5 QEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVVFE   84 (338)
T ss_pred             EEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEEEEe
Confidence            46799999999999995 46889999998743    2234577899999999999999999988643     25899999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      ||+ ++|.+++....     .+++..+..++.|+++||+|||+   .+|+||||||+|||++.++.+||+|||+++....
T Consensus        85 ~~~-~~L~~~l~~~~-----~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~  155 (338)
T cd07859          85 LME-SDLHQVIKAND-----DLTPEHHQFFLYQLLRALKYIHT---ANVFHRDLKPKNILANADCKLKICDFGLARVAFN  155 (338)
T ss_pred             cCC-CCHHHHHHhcc-----cCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCcEEEccCcccccccc
Confidence            996 68999887543     48899999999999999999995   4599999999999999999999999999875421


Q ss_pred             ---------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHHHHHHhhccccc-
Q 006559          488 ---------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVKWVQMMGQDESA-  556 (640)
Q Consensus       488 ---------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~~~~~~~~~~~~-  556 (640)
                               ...++..|+|||++..     ....++.++|||||||++|||+||+.||..... .....+......... 
T Consensus       156 ~~~~~~~~~~~~~t~~y~aPE~~~~-----~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~  230 (338)
T cd07859         156 DTPTAIFWTDYVATRWYRAPELCGS-----FFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPE  230 (338)
T ss_pred             ccCccccccCCCCCCCcCCHHHHhc-----cccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHH
Confidence                     2346788999997521     124577899999999999999999999975321 111111111000000 


Q ss_pred             --cccc-----------chhhcc--ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          557 --WEVF-----------DFELIM--DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       557 --~~~~-----------d~~~~~--~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                        ..+.           ......  ..........+.+++.+||+.||++||++.|+++
T Consensus       231 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~  289 (338)
T cd07859         231 TISRVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALA  289 (338)
T ss_pred             HHHHhhhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhc
Confidence              0000           000000  0000111235678889999999999999999975

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=2.4e-36  Score=330.96  Aligned_cols=240  Identities=20%  Similarity=0.248  Sum_probs=185.8

Q ss_pred             hhccccccCcceEEEEEeC-C-CcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          337 SAELLGKGCVGATYKVVLD-G-GDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~-~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ..+.||+|+||.||+|... + +..||+|.+...  .....+..|+++++.++|||||++++++...+..|+||||+++|
T Consensus        71 ~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~~gg  150 (478)
T PTZ00267         71 LTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYGSGG  150 (478)
T ss_pred             EEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECCCCC
Confidence            3578999999999999853 3 567888876543  22345677999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      +|.++++.... ...++++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++.+..     
T Consensus       151 ~L~~~l~~~~~-~~~~l~~~~~~~i~~qi~~aL~~lH~---~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~  226 (478)
T PTZ00267        151 DLNKQIKQRLK-EHLPFQEYEVGLLFYQIVLALDEVHS---RKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLD  226 (478)
T ss_pred             CHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHh---CCEEECCcCHHhEEECCCCcEEEEeCcCceecCCccccc
Confidence            99998864321 22368889999999999999999994   5699999999999999999999999999986542     


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         ...+|..|+|||++       ....++.++|||||||++|||+||+.||.....  ...........     .++  
T Consensus       227 ~~~~~~gt~~y~aPE~~-------~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~--~~~~~~~~~~~-----~~~--  290 (478)
T PTZ00267        227 VASSFCGTPYYLAPELW-------ERKRYSKKADMWSLGVILYELLTLHRPFKGPSQ--REIMQQVLYGK-----YDP--  290 (478)
T ss_pred             cccccCCCccccCHhHh-------CCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhCC-----CCC--
Confidence               22468889999964       345678899999999999999999999974321  12121111110     000  


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       .+.   ....++.+++..||+.+|++||++.+++.
T Consensus       291 -~~~---~~s~~~~~li~~~L~~dP~~Rps~~~~l~  322 (478)
T PTZ00267        291 -FPC---PVSSGMKALLDPLLSKNPALRPTTQQLLH  322 (478)
T ss_pred             -CCc---cCCHHHHHHHHHHhccChhhCcCHHHHHh
Confidence             001   11234667788899999999999998863

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=9.3e-36  Score=301.07  Aligned_cols=243  Identities=23%  Similarity=0.386  Sum_probs=190.8

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ..+.||+|+||.||+|+..+...||+|+++.. ...+.+.+|++++++++||||+++++++. .+..++||||+++|+|.
T Consensus        10 ~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~~~~~L~   88 (262)
T cd05071          10 LEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYMSKGSLL   88 (262)
T ss_pred             EeeecCCCCCCcEEEEEecCCceEEEEecccCccCHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEEEcCCCCcHH
Confidence            35679999999999999877778999999864 33567888999999999999999999875 45689999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc------
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------  489 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~------  489 (640)
                      +++....+   ..+++..+..++.|++.||+|||   ..+|+||||||+||++++++.+||+|||.++......      
T Consensus        89 ~~~~~~~~---~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~~~~  162 (262)
T cd05071          89 DFLKGEMG---KYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQG  162 (262)
T ss_pred             HHHhhccc---cCCCHHHHHHHHHHHHHHHHHHH---HCCccccccCcccEEEcCCCcEEeccCCceeeccccccccccC
Confidence            99975421   24789999999999999999999   4569999999999999999999999999987654321      


Q ss_pred             -cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          490 -FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       490 -~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                       ..+..|+|||+.       ....++.++|||||||++|||+| |+.||.......  .........        .... 
T Consensus       163 ~~~~~~y~~PE~~-------~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~~--~~~~~~~~~--------~~~~-  224 (262)
T cd05071         163 AKFPIKWTAPEAA-------LYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE--VLDQVERGY--------RMPC-  224 (262)
T ss_pred             CcccceecCHhHh-------ccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChHH--HHHHHhcCC--------CCCC-
Confidence             224569999953       34557789999999999999999 888886432111  111111000        0000 


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                        ..+....+.+++.+|++.+|++||++.++.+.|++..
T Consensus       225 --~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~~  261 (262)
T cd05071         225 --PPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF  261 (262)
T ss_pred             --ccccCHHHHHHHHHHccCCcccCCCHHHHHHHHHHhc
Confidence              1223456788999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=6.1e-36  Score=301.56  Aligned_cols=239  Identities=23%  Similarity=0.336  Sum_probs=185.2

Q ss_pred             cccccCcceEEEEEeC---CCcEEEEEEeccccc---hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          340 LLGKGCVGATYKVVLD---GGDVVVVKRIRERKK---KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~---~~~~vavK~l~~~~~---~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .||+|+||.||+|++.   ++..||+|.+.....   .+++.+|++++++++||||+++++++. .+..++||||+++|+
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~~~~~lv~e~~~~~~   80 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE-AEALMLVMEMASGGP   80 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-CCCeEEEEEeCCCCC
Confidence            3899999999999764   345699999876532   356888999999999999999999885 457899999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc----
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF----  489 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~----  489 (640)
                      |.+++....    ..+++..+++++.|++.||+|||+   .+++||||||+|||++.++.+||+|||+++......    
T Consensus        81 L~~~l~~~~----~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~  153 (257)
T cd05115          81 LNKFLSGKK----DEITVSNVVELMHQVSMGMKYLEG---KNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYK  153 (257)
T ss_pred             HHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHHh---cCeeecccchheEEEcCCCcEEeccCCccccccCCcccee
Confidence            999987533    258899999999999999999994   469999999999999999999999999987553211    


Q ss_pred             -----cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchh
Q 006559          490 -----FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       490 -----~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                           ..+..|+|||..       ....++.++|||||||++||+++ |+.||.....  ..+..........    +  
T Consensus       154 ~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~~~~~~----~--  218 (257)
T cd05115         154 ARSAGKWPLKWYAPECI-------NFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKG--PEVMSFIEQGKRL----D--  218 (257)
T ss_pred             ccCCCCCCcccCCHHHH-------ccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCH--HHHHHHHHCCCCC----C--
Confidence                 113579999964       33456789999999999999997 9999964321  1222221111100    0  


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                        .+.   ....++.+++..||..+|++||++.+|.+.|+.+.
T Consensus       219 --~~~---~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~~  256 (257)
T cd05115         219 --CPA---ECPPEMYALMKDCWIYKWEDRPNFAKVEERMRTYY  256 (257)
T ss_pred             --CCC---CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhhhc
Confidence              011   12345667888899999999999999999998763

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=8.5e-36  Score=301.09  Aligned_cols=242  Identities=23%  Similarity=0.327  Sum_probs=183.7

Q ss_pred             ccccccCcceEEEEEeCC----CcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEc-CCeEEEEEeccC
Q 006559          339 ELLGKGCVGATYKVVLDG----GDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNG-KDELFLVYDYLP  410 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~----~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~-~~~~~lV~Ey~~  410 (640)
                      +.||+|+||.||+|...+    ...||+|.+....   ..+.+.+|+.+++.++||||+++++++.. ++..++||||++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~   80 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK   80 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence            468999999999998532    3569999886432   23567788899999999999999998764 556899999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                      +|+|.+++.....    .+.+..++.++.|++.||+|||   ..+++||||||+|||+++++.+||+|||+++....   
T Consensus        81 ~~~L~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~  153 (262)
T cd05058          81 HGDLRNFIRSETH----NPTVKDLIGFGLQVAKGMEYLA---SKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEY  153 (262)
T ss_pred             CCCHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHH---hCCccccccCcceEEEcCCCcEEECCccccccccCCcc
Confidence            9999999975431    3577888999999999999999   45699999999999999999999999999875432   


Q ss_pred             -------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhC-CCCCCCCCcchHHHHHHhhcccccccc
Q 006559          488 -------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG-KMAKGDGELGIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       488 -------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg-~~p~~~~~~~~~~~~~~~~~~~~~~~~  559 (640)
                             ....+..|+|||..       ....++.++|||||||++|||+|| .+||...  ......+.......    
T Consensus       154 ~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~--~~~~~~~~~~~~~~----  220 (262)
T cd05058         154 YSVHNHTGAKLPVKWMALESL-------QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV--DSFDITVYLLQGRR----  220 (262)
T ss_pred             eeecccccCcCCccccChhHh-------ccCccchHHHHHHHHHHHHHHHcCCCCCCCCC--CHHHHHHHHhcCCC----
Confidence                   11234579999954       345577899999999999999995 5556432  12222222211110    


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                          ...+.   .....+.+++..||+.+|++||++.++++.|+++..
T Consensus       221 ----~~~~~---~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~~  261 (262)
T cd05058         221 ----LLQPE---YCPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQIFS  261 (262)
T ss_pred             ----CCCCC---cCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHhc
Confidence                00011   122357788899999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=5.5e-36  Score=319.55  Aligned_cols=248  Identities=20%  Similarity=0.339  Sum_probs=190.1

Q ss_pred             hhccccccCcceEEEEEeCC------CcEEEEEEeccccc---hHHHHHHHHHHhccC-CCcccceeEEEEcCCeEEEEE
Q 006559          337 SAELLGKGCVGATYKVVLDG------GDVVVVKRIRERKK---KREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELFLVY  406 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~------~~~vavK~l~~~~~---~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lV~  406 (640)
                      ..+.||+|+||.||+|++.+      +..||||+++....   .+.+..|++++.++. |||||+++++|...+..++||
T Consensus        41 ~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~~~~iv~  120 (401)
T cd05107          41 LGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGPIYIIT  120 (401)
T ss_pred             hhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCCCcEEEE
Confidence            35789999999999998643      35799999975422   345778999999997 999999999999999999999


Q ss_pred             eccCCCCHHHhhccCCC---------------------------------------------------------------
Q 006559          407 DYLPHGSLHSLLHGSRG---------------------------------------------------------------  423 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~---------------------------------------------------------------  423 (640)
                      ||+++|+|.++++....                                                               
T Consensus       121 E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (401)
T cd05107         121 EYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDMKGTVK  200 (401)
T ss_pred             eccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhcchhhhh
Confidence            99999999999975421                                                               


Q ss_pred             ------------------------------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC
Q 006559          424 ------------------------------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN  473 (640)
Q Consensus       424 ------------------------------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~  473 (640)
                                                    .....++|...++++.|++.||+|||   ..+|+||||||+|||+++++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrdlkp~NiLl~~~~~  277 (401)
T cd05107         201 YADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLA---SKNCVHRDLAARNVLICEGKL  277 (401)
T ss_pred             hhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcCcccCCcceEEEeCCCE
Confidence                                          01124778889999999999999999   456999999999999999999


Q ss_pred             eEEccCCcccccCC--------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchH
Q 006559          474 ACISDIGVHQLFHT--------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIV  544 (640)
Q Consensus       474 ~kl~DfGl~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~  544 (640)
                      +||+|||+++....        ....+..|+|||.+       ....++.++|||||||++|||++ |+.||........
T Consensus       278 ~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~  350 (401)
T cd05107         278 VKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESI-------FNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQ  350 (401)
T ss_pred             EEEEecCcceecccccccccCCCcCCCCceeChHHh-------cCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHH
Confidence            99999999876431        12235679999965       33456789999999999999998 8889864321111


Q ss_pred             HHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          545 KWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       545 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                       ..........        ...+.   ....++.+++..||+.+|++||+++++++.|+++.
T Consensus       351 -~~~~~~~~~~--------~~~p~---~~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~~  400 (401)
T cd05107         351 -FYNAIKRGYR--------MAKPA---HASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDLL  400 (401)
T ss_pred             -HHHHHHcCCC--------CCCCC---CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence             1111111100        00111   11235677888899999999999999999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=5.5e-36  Score=306.86  Aligned_cols=248  Identities=18%  Similarity=0.243  Sum_probs=184.2

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|+.. +++.||||+++...    ..+.+.+|+.++++++||||+++++++...+..++||||++++
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   85 (287)
T cd07848           6 LGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEYVEKN   85 (287)
T ss_pred             EEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEecCCCC
Confidence            467999999999999975 57889999987542    2345778999999999999999999999999999999999988


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      .+..+....     ..+++..+..++.|++.||+|||   ..+|+||||||+||+++.++.+||+|||+++....     
T Consensus        86 ~l~~~~~~~-----~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~  157 (287)
T cd07848          86 MLELLEEMP-----NGVPPEKVRSYIYQLIKAIHWCH---KNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNAN  157 (287)
T ss_pred             HHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEEeeccCccccccccccc
Confidence            776554322     24788899999999999999999   45699999999999999999999999999876532     


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHh-hc-----------
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMM-GQ-----------  552 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~-~~-----------  552 (640)
                        ...++..|+|||++.       ...++.++|||||||++|||++|+.||...... ...-+... ..           
T Consensus       158 ~~~~~~~~~y~aPE~~~-------~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (287)
T cd07848         158 YTEYVATRWYRSPELLL-------GAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYS  230 (287)
T ss_pred             ccccccccccCCcHHHc-------CCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhc
Confidence              124577899999753       345678999999999999999999999753211 10001100 00           


Q ss_pred             ccccccccchhhccCh-----HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          553 DESAWEVFDFELIMDK-----EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       553 ~~~~~~~~d~~~~~~~-----~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .........+......     ........+.+++.+|++.||++|||+.++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~  283 (287)
T cd07848         231 NPRFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLN  283 (287)
T ss_pred             cchhcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            0000000000000000     00112345788899999999999999998864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=7.6e-36  Score=303.09  Aligned_cols=245  Identities=23%  Similarity=0.363  Sum_probs=187.8

Q ss_pred             ccccccCcceEEEEEeCC-Cc--EEEEEEeccc---cchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKGCVGATYKVVLDG-GD--VVVVKRIRER---KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~-~~--~vavK~l~~~---~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ++||+|+||.||+|+..+ +.  .+++|.++..   ...+.+..|++++.++ +||||+++++++...+..++||||+++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            468999999999999754 33  4688888753   2335677899999999 799999999999999999999999999


Q ss_pred             CCHHHhhccCCC-----------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCC
Q 006559          412 GSLHSLLHGSRG-----------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIG  480 (640)
Q Consensus       412 gsL~~~l~~~~~-----------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfG  480 (640)
                      |+|.+++.....           .....+++..+..++.|++.||+|||+   .+++||||||+||++++++.+||+|||
T Consensus        81 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~---~~i~H~dikp~nili~~~~~~kl~dfg  157 (270)
T cd05047          81 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFG  157 (270)
T ss_pred             CcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccccceEEEcCCCeEEECCCC
Confidence            999999875431           011247899999999999999999994   569999999999999999999999999


Q ss_pred             cccccCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhccc
Q 006559          481 VHQLFHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDE  554 (640)
Q Consensus       481 l~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~  554 (640)
                      +++....     ....+..|+|||++       ....++.++|||||||++|||+| |+.||.....  ....+......
T Consensus       158 l~~~~~~~~~~~~~~~~~~y~apE~~-------~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~--~~~~~~~~~~~  228 (270)
T cd05047         158 LSRGQEVYVKKTMGRLPVRWMAIESL-------NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC--AELYEKLPQGY  228 (270)
T ss_pred             CccccchhhhccCCCCccccCChHHH-------ccCCCCchhhHHHHHHHHHHHHcCCCCCccccCH--HHHHHHHhCCC
Confidence            9864321     11124569999953       44567789999999999999997 9999964321  11111111110


Q ss_pred             ccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          555 SAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       555 ~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                      ..    +    ..   .....++.+++.+||+.+|.+||++.+++..|+++.
T Consensus       229 ~~----~----~~---~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~~  269 (270)
T cd05047         229 RL----E----KP---LNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML  269 (270)
T ss_pred             CC----C----CC---CcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHhh
Confidence            00    0    00   112235678889999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=1.4e-35  Score=300.09  Aligned_cols=248  Identities=18%  Similarity=0.344  Sum_probs=197.3

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|... +|+.||+|.++..     ...+.+.+|++++++++|+||+++++++...+..++||||+++
T Consensus         7 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   86 (267)
T cd08224           7 EKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVLELADA   86 (267)
T ss_pred             eeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEecCCC
Confidence            567999999999999976 7889999988632     2245678899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---  488 (640)
                      |+|.+++..... ....+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||+++.....   
T Consensus        87 ~~L~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~~  162 (267)
T cd08224          87 GDLSRMIKHFKK-QKRLIPERTIWKYFVQLCSALEHMHS---KRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTA  162 (267)
T ss_pred             CCHHHHHHHhcc-cCCCcCHHHHHHHHHHHHHHHHHHHh---CCEecCCcChhhEEECCCCcEEEeccceeeeccCCCcc
Confidence            999999864321 22358899999999999999999994   56999999999999999999999999998765321   


Q ss_pred             ---ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          489 ---FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       489 ---~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                         ...+..|+|||.+       ....++.++|||||||++|||++|+.||...........+......     . +.. 
T Consensus       163 ~~~~~~~~~y~apE~~-------~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~-----~-~~~-  228 (267)
T cd08224         163 AHSLVGTPYYMSPERI-------HENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCD-----Y-PPL-  228 (267)
T ss_pred             cceecCCccccCHHHh-------ccCCCCchhcHHHHHHHHHHHHHCCCCcccCCccHHHHHhhhhcCC-----C-CCC-
Confidence               2346679999964       3445778999999999999999999999765544433333222110     0 000 


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                       .  .......+.+++.+||..+|++||++.+|+++|++++
T Consensus       229 -~--~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~~  266 (267)
T cd08224         229 -P--ADHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEMH  266 (267)
T ss_pred             -C--hhhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHhc
Confidence             0  1123345677888899999999999999999999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=4.2e-37  Score=320.08  Aligned_cols=230  Identities=22%  Similarity=0.317  Sum_probs=181.1

Q ss_pred             ccccccCcceEEEEEe----CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          339 ELLGKGCVGATYKVVL----DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~----~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      +.||+|+||.||+++.    .+|..||+|+++...    ....+..|++++++++||||+++++++...+..|+||||++
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            4699999999999874    357899999997542    23446678999999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC--
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP--  488 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~--  488 (640)
                      +|+|.+++....     .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++.....  
T Consensus        82 ~~~L~~~l~~~~-----~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~  153 (318)
T cd05582          82 GGDLFTRLSKEV-----MFTEEDVKFYLAELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK  153 (318)
T ss_pred             CCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCC
Confidence            999999987543     58899999999999999999995   45999999999999999999999999998765322  


Q ss_pred             ----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          489 ----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       489 ----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                          ..++..|+|||++       ....++.++|||||||++|||+||+.||......  .........         ..
T Consensus       154 ~~~~~~g~~~y~aPE~~-------~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~--~~~~~i~~~---------~~  215 (318)
T cd05582         154 KAYSFCGTVEYMAPEVV-------NRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRK--ETMTMILKA---------KL  215 (318)
T ss_pred             ceecccCChhhcCHHHH-------cCCCCCCccceeccceEeeeeccCCCCCCCCCHH--HHHHHHHcC---------CC
Confidence                3457889999964       3345678999999999999999999999753321  111111111         01


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSI  597 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~  597 (640)
                      ..+...   ..++.+++..||+.||++||++.+
T Consensus       216 ~~p~~~---~~~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         216 GMPQFL---SPEAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             CCCCCC---CHHHHHHHHHHhhcCHhHcCCCCC
Confidence            111111   224566778899999999999655

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=3.5e-36  Score=321.04  Aligned_cols=240  Identities=20%  Similarity=0.304  Sum_probs=181.3

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||+||+|+. .++..||||++....     ..+.+..|++++++++||||+++++++.+.+..|+||||+++
T Consensus         6 ~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E~~~g   85 (381)
T cd05626           6 IKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPG   85 (381)
T ss_pred             EEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEecCCC
Confidence            46799999999999985 457889999997541     234577899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC-----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----  486 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~-----  486 (640)
                      |+|.+++....     .+++.....++.|++.||+|||.   .+|+||||||+|||++.++.+||+|||+++.+.     
T Consensus        86 g~L~~~l~~~~-----~~~e~~~~~~~~qi~~aL~~LH~---~givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~  157 (381)
T cd05626          86 GDMMSLLIRME-----VFPEVLARFYIAELTLAIESVHK---MGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNS  157 (381)
T ss_pred             CcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCcHHHEEECCCCCEEEeeCcCCccccccccc
Confidence            99999987543     47888888899999999999994   569999999999999999999999999875321     


Q ss_pred             ------------------------------------------------CCccccccccCCccccCCCCccccCCCCCccc
Q 006559          487 ------------------------------------------------TPFFINDAYNAPELKFNNNNNYSQRKFWQRCD  518 (640)
Q Consensus       487 ------------------------------------------------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~D  518 (640)
                                                                      ....+|..|+|||++       ....++.++|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~-------~~~~~~~~~D  230 (381)
T cd05626         158 KYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVL-------LRKGYTQLCD  230 (381)
T ss_pred             ccccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHH-------cCCCCCCccc
Confidence                                                            113467899999975       3345778999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 006559          519 VYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIV  598 (640)
Q Consensus       519 V~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v  598 (640)
                      ||||||++|||+||+.||......... .+.......      ...........+..+++.-+ .|+..+|.+||++.++
T Consensus       231 iwSlG~il~elltG~~Pf~~~~~~~~~-~~i~~~~~~------~~~~~~~~~s~~~~dli~~l-l~~~~~~~~R~~~~~~  302 (381)
T cd05626         231 WWSVGVILFEMLVGQPPFLAPTPTETQ-LKVINWENT------LHIPPQVKLSPEAVDLITKL-CCSAEERLGRNGADDI  302 (381)
T ss_pred             eeehhhHHHHHHhCCCCCcCCCHHHHH-HHHHccccc------cCCCCCCCCCHHHHHHHHHH-ccCcccccCCCCHHHH
Confidence            999999999999999999754322111 111100000      00000011223333333322 3778888889999999


Q ss_pred             HH
Q 006559          599 HR  600 (640)
Q Consensus       599 ~~  600 (640)
                      +.
T Consensus       303 l~  304 (381)
T cd05626         303 KA  304 (381)
T ss_pred             hc
Confidence            75

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=8e-36  Score=302.16  Aligned_cols=249  Identities=17%  Similarity=0.302  Sum_probs=195.3

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..+.||+|+||.||++.. .++..+|||.+...     ....++.+|+++++.++||||+++++++...+..++||||++
T Consensus         6 ~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~   85 (267)
T cd08229           6 IEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELAD   85 (267)
T ss_pred             hhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEEEecC
Confidence            356799999999999995 57889999987643     223467789999999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                      +++|.+++..... ....+++.....++.|++.||.|||   ..+++|+||||+||+++.++.++|+|||++.....   
T Consensus        86 ~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~  161 (267)
T cd08229          86 AGDLSRMIKHFKK-QKRLIPEKTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT  161 (267)
T ss_pred             CCCHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEECcchhhhccccCCc
Confidence            9999998864221 1235889999999999999999999   45699999999999999999999999999876532   


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         ...++..|+|||..       ....++.++||||||+++|||++|+.||.........+.+.....      ..+..
T Consensus       162 ~~~~~~~~~~~~ape~~-------~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~------~~~~~  228 (267)
T cd08229         162 AAHSLVGTPYYMSPERI-------HENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQC------DYPPL  228 (267)
T ss_pred             ccccccCCcCccCHHHh-------cCCCccchhhHHHHHHHHHHHHhCCCCcccccchHHHHhhhhhcC------CCCCC
Confidence               12456789999964       334567899999999999999999999975443333332222111      00111


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                      ..    ......+.+++.+||+.+|++||||.+|.++++++.
T Consensus       229 ~~----~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~~  266 (267)
T cd08229         229 PS----DHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRMH  266 (267)
T ss_pred             Cc----ccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhhc
Confidence            00    122335677788899999999999999999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=5.1e-36  Score=305.49  Aligned_cols=244  Identities=21%  Similarity=0.321  Sum_probs=187.5

Q ss_pred             hccccccCcceEEEEEeC------CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVLD------GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~------~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      .+.||+|+||.||+|...      .+..||||.+....   ...++.+|+.+++.++||||+++++++......++||||
T Consensus        11 ~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~e~   90 (277)
T cd05062          11 SRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMEL   90 (277)
T ss_pred             eeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCeEEEEec
Confidence            567999999999998753      24579999886542   234577899999999999999999999988999999999


Q ss_pred             cCCCCHHHhhccCCCC-----CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccc
Q 006559          409 LPHGSLHSLLHGSRGP-----GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ  483 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~-----~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~  483 (640)
                      +++|+|.++++.....     ....+++..++.++.|++.||+|||+   .+++||||||+||++++++.+||+|||+++
T Consensus        91 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~~vH~dlkp~Nil~~~~~~~~l~dfg~~~  167 (277)
T cd05062          91 MTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTR  167 (277)
T ss_pred             CCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCcchheEEEcCCCCEEECCCCCcc
Confidence            9999999998753311     12246788999999999999999994   569999999999999999999999999987


Q ss_pred             ccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhccc
Q 006559          484 LFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDE  554 (640)
Q Consensus       484 ~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~  554 (640)
                      .....        ...+..|+|||++       ....++.++|||||||++|||+| |+.||.....  ....+......
T Consensus       168 ~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~--~~~~~~~~~~~  238 (277)
T cd05062         168 DIYETDYYRKGGKGLLPVRWMSPESL-------KDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSN--EQVLRFVMEGG  238 (277)
T ss_pred             ccCCcceeecCCCCccCHhhcChhHh-------hcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCH--HHHHHHHHcCC
Confidence            54321        1225579999964       34557789999999999999999 6888864321  12222111111


Q ss_pred             ccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 006559          555 SAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIED  604 (640)
Q Consensus       555 ~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~  604 (640)
                       .   .+    ..   ......+.+++.+||+.+|++||++.|+++.|++
T Consensus       239 -~---~~----~~---~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~  277 (277)
T cd05062         239 -L---LD----KP---DNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKE  277 (277)
T ss_pred             -c---CC----CC---CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHhhC
Confidence             0   00    00   1123357778889999999999999999998863

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=6.3e-36  Score=303.20  Aligned_cols=242  Identities=20%  Similarity=0.350  Sum_probs=190.3

Q ss_pred             hhccccccCcceEEEEEeCC-C---cEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLDG-G---DVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~-~---~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ..+.||+|+||.||+|+... +   ..+|+|.++...   ..+.+..|++++++++|+||+++.+++...+..++||||+
T Consensus         9 ~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   88 (268)
T cd05063           9 KQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMIITEYM   88 (268)
T ss_pred             EeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEEEEEcC
Confidence            35789999999999998642 3   368999987542   2456788999999999999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF  489 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~  489 (640)
                      ++++|.+++....    ..+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+|++|||++.......
T Consensus        89 ~~~~L~~~~~~~~----~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~  161 (268)
T cd05063          89 ENGALDKYLRDHD----GEFSSYQLVGMLRGIAAGMKYLSD---MNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDP  161 (268)
T ss_pred             CCCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccchhhEEEcCCCcEEECCCccceeccccc
Confidence            9999999997543    258899999999999999999994   459999999999999999999999999987653211


Q ss_pred             ---------cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccc
Q 006559          490 ---------FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       490 ---------~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  559 (640)
                               ..+..|+|||++       ....++.++|||||||++|||+| |+.||.....  .++.+........   
T Consensus       162 ~~~~~~~~~~~~~~y~~PE~~-------~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~--~~~~~~i~~~~~~---  229 (268)
T cd05063         162 EGTYTTSGGKIPIRWTAPEAI-------AYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSN--HEVMKAINDGFRL---  229 (268)
T ss_pred             ccceeccCCCcCceecCHHHh-------hcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCH--HHHHHHHhcCCCC---
Confidence                     113469999954       34567789999999999999998 9999864321  1222222111000   


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                              +...+....+.+++.+||+.+|++||+|.+|++.|+++
T Consensus       230 --------~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         230 --------PAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL  267 (268)
T ss_pred             --------CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence                    00012234577889999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=9.5e-36  Score=302.45  Aligned_cols=245  Identities=22%  Similarity=0.352  Sum_probs=188.3

Q ss_pred             hccccccCcceEEEEEeCC----CcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCe------EE
Q 006559          338 AELLGKGCVGATYKVVLDG----GDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDE------LF  403 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~----~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~------~~  403 (640)
                      .+.||+|+||.||+|....    +..||+|+++...    ....+..|++.++.++||||+++++++...+.      .+
T Consensus         4 ~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~   83 (273)
T cd05035           4 GKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKPM   83 (273)
T ss_pred             ccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCcccE
Confidence            4679999999999998642    3679999987542    12457788999999999999999999876544      79


Q ss_pred             EEEeccCCCCHHHhhccCCC-CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcc
Q 006559          404 LVYDYLPHGSLHSLLHGSRG-PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVH  482 (640)
Q Consensus       404 lV~Ey~~~gsL~~~l~~~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~  482 (640)
                      +||||+++|+|..++..... .....+++.....++.|++.||+|||+   .+|+||||||+||++++++.+||+|||++
T Consensus        84 ~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~dfg~~  160 (273)
T cd05035          84 VILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSN---RNFIHRDLAARNCMLREDMTVCVADFGLS  160 (273)
T ss_pred             EEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHh---CCeeccccchheEEECCCCeEEECCccce
Confidence            99999999999999864431 122358899999999999999999994   45999999999999999999999999998


Q ss_pred             cccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcc
Q 006559          483 QLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQD  553 (640)
Q Consensus       483 ~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~  553 (640)
                      +.....        ...+..|+|||.+       ....++.++|||||||++|||++ |..||.+...  .+..+.....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~pe~~-------~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~--~~~~~~~~~~  231 (273)
T cd05035         161 KKIYSGDYYRQGRIAKMPVKWIAIESL-------ADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVEN--HEIYDYLRHG  231 (273)
T ss_pred             eeccccccccccccccCCccccCHhhc-------ccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHcC
Confidence            865322        1124579999954       34556789999999999999999 8889864322  1222222111


Q ss_pred             cccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          554 ESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       554 ~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                      ...      .  ..   .....++.+++.+||+.||++||++.|+++.|+++
T Consensus       232 ~~~------~--~~---~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~  272 (273)
T cd05035         232 NRL------K--QP---EDCLDELYDLMYSCWRADPKDRPTFTKLREVLENI  272 (273)
T ss_pred             CCC------C--CC---cCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            100      0  01   12334677888899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=2.7e-36  Score=297.46  Aligned_cols=259  Identities=21%  Similarity=0.357  Sum_probs=193.6

Q ss_pred             hccccccCcceEEEEE-eCCCcEEEEEEeccccc----hHHHHHHHHHHhccCCCc-ccceeEEEEcCC------eEEEE
Q 006559          338 AELLGKGCVGATYKVV-LDGGDVVVVKRIRERKK----KREVDEWLRVIGGLRHSN-IVSIRAYCNGKD------ELFLV  405 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~~~----~~~~~~e~~~l~~l~H~n-iv~l~~~~~~~~------~~~lV  405 (640)
                      .+.||+|.||+||+|+ ..+|+.||+|+++....    .....+|+-++++++|+| ||.+++++....      .+++|
T Consensus        16 ~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~l~lv   95 (323)
T KOG0594|consen   16 VEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGKLYLV   95 (323)
T ss_pred             HHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccceEEEE
Confidence            4569999999999999 46788999999986533    233568899999999999 999999998876      89999


Q ss_pred             EeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccccc
Q 006559          406 YDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF  485 (640)
Q Consensus       406 ~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~  485 (640)
                      +||+.. +|..++....... ..++-..+..++.|+++||+|||+.   +|+||||||.|||++++|.+||+|||+|+.+
T Consensus        96 fe~~d~-DL~~ymd~~~~~~-~g~~~~~ik~~m~Qll~gl~~~H~~---~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~  170 (323)
T KOG0594|consen   96 FEFLDR-DLKKYMDSLPKKP-QGLPPRLIKSFMRQLLRGLAFLHSH---GILHRDLKPQNLLISSSGVLKLADFGLARAF  170 (323)
T ss_pred             EEeecc-cHHHHHHhccccc-cCCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCcceEEECCCCcEeeeccchHHHh
Confidence            999976 9999987654221 2355578899999999999999954   5999999999999999999999999999876


Q ss_pred             C------CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC-cc-hHHHHHHhhcc-ccc
Q 006559          486 H------TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGE-LG-IVKWVQMMGQD-ESA  556 (640)
Q Consensus       486 ~------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~-~~-~~~~~~~~~~~-~~~  556 (640)
                      .      ++.+.|.+|+|||++.+.      ..|++..||||+||++.||++++.-|.+.. .+ +....+.++.. +..
T Consensus       171 ~ip~~~yt~evvTlWYRaPEvLlGs------~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~e~~  244 (323)
T KOG0594|consen  171 SIPMRTYTPEVVTLWYRAPEVLLGS------TSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPNEKD  244 (323)
T ss_pred             cCCcccccccEEEeeccCHHHhcCC------CcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCCccC
Confidence            5      234568899999997543      346788999999999999999998887432 11 22223333322 222


Q ss_pred             cccc----chh-----hccChHHH----HHHHHHHHHHHHccCCCCCCCCCHHHHHHH--HHHhhc
Q 006559          557 WEVF----DFE-----LIMDKEME----EEMRALLQVALLCLAPLPKDRPNMSIVHRM--IEDIRT  607 (640)
Q Consensus       557 ~~~~----d~~-----~~~~~~~~----~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~--L~~i~~  607 (640)
                      |.-+    +..     ........    ....+..+++..|++.+|++|.|+..++..  +.++..
T Consensus       245 Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h~yf~~~~~  310 (323)
T KOG0594|consen  245 WPGVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTHPYFSELPE  310 (323)
T ss_pred             CCCccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcChhhccccc
Confidence            2211    111     00011111    111367788899999999999999998764  555543

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=3.7e-36  Score=307.68  Aligned_cols=251  Identities=29%  Similarity=0.436  Sum_probs=187.8

Q ss_pred             hccccccCcceEEEEEeC-----CCcEEEEEEecccc--chHHHHHHHHHHhccCCCcccceeEEEEc--CCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVLD-----GGDVVVVKRIRERK--KKREVDEWLRVIGGLRHSNIVSIRAYCNG--KDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-----~~~~vavK~l~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~--~~~~~lV~Ey  408 (640)
                      .+.||+|+||.||++...     ++..||+|++....  ..+.+..|++++++++||||+++.+++..  ....++||||
T Consensus         9 ~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~   88 (284)
T cd05081           9 IQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEY   88 (284)
T ss_pred             eeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceEEEEEe
Confidence            567999999999999753     47789999987552  24567889999999999999999998754  3468999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP  488 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~  488 (640)
                      +++|+|.+++....    ..++|..+..++.|++.||+|||.   .+|+||||||+||++++++.+||+|||+++.....
T Consensus        89 ~~~~~L~~~l~~~~----~~l~~~~~~~~~~~l~~aL~~LH~---~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~  161 (284)
T cd05081          89 LPYGSLRDYLQKHR----ERLDHRKLLLYASQICKGMEYLGS---KRYVHRDLATRNILVESENRVKIGDFGLTKVLPQD  161 (284)
T ss_pred             cCCCCHHHHHHhcC----cCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCCHhhEEECCCCeEEECCCcccccccCC
Confidence            99999999997543    247899999999999999999994   56999999999999999999999999998865321


Q ss_pred             c---------cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccc-
Q 006559          489 F---------FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE-  558 (640)
Q Consensus       489 ~---------~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~-  558 (640)
                      .         ..+..|+|||+.       ....++.++|||||||++|||++|..|+.....   .+.+.......... 
T Consensus       162 ~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~---~~~~~~~~~~~~~~~  231 (284)
T cd05081         162 KEYYKVREPGESPIFWYAPESL-------TESKFSVASDVWSFGVVLYELFTYSDKSCSPPA---EFMRMMGNDKQGQMI  231 (284)
T ss_pred             CcceeecCCCCCceEeeCHHHh-------ccCCcChHHHHHHHHHHHHHHhhcCCcCCCcch---hhhhhcccccccccc
Confidence            1         123358999964       334567899999999999999998877543221   12222111111000 


Q ss_pred             ------ccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          559 ------VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       559 ------~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                            ........ +.......++.+++.+||+.+|++|||+.+|++.|++++
T Consensus       232 ~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~~  284 (284)
T cd05081         232 VYHLIELLKNNGRL-PAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAIR  284 (284)
T ss_pred             hHHHHHHHhcCCcC-CCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhcC
Confidence                  00000000 000122345778888999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-36  Score=319.17  Aligned_cols=229  Identities=21%  Similarity=0.326  Sum_probs=182.4

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ...+||+|.||+|+++..+ +++.+|||.+++.     ..-+..+.|.+++... +||.++.++..|++++++|+||||+
T Consensus       372 ~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~fvmey~  451 (694)
T KOG0694|consen  372 LLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLFFVMEYV  451 (694)
T ss_pred             EEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEEEEEEec
Confidence            3578999999999999975 4778999999876     2234456677766655 5999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccccc----
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF----  485 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~----  485 (640)
                      .+|++..+.+..      .++......||..|+.||+|||   +.+||+||||.+|||||.+|.+||+|||+++..    
T Consensus       452 ~Ggdm~~~~~~~------~F~e~rarfyaAev~l~L~fLH---~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g  522 (694)
T KOG0694|consen  452 AGGDLMHHIHTD------VFSEPRARFYAAEVVLGLQFLH---ENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQG  522 (694)
T ss_pred             CCCcEEEEEecc------cccHHHHHHHHHHHHHHHHHHH---hcCceeeecchhheEEcccCcEEecccccccccCCCC
Confidence            999966555533      4889999999999999999999   556999999999999999999999999999863    


Q ss_pred             --CCCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchh
Q 006559          486 --HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       486 --~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                        +..+++|+.|+|||++       ....|+..+|.|||||+||||+.|+.||.+++.+.+  ..         .|+..+
T Consensus       523 ~~TsTfCGTpey~aPEil-------~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee~--Fd---------sI~~d~  584 (694)
T KOG0694|consen  523 DRTSTFCGTPEFLAPEVL-------TEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEEV--FD---------SIVNDE  584 (694)
T ss_pred             CccccccCChhhcChhhh-------ccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHHH--HH---------HHhcCC
Confidence              2457889999999975       456788999999999999999999999985432111  11         111112


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCH
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNM  595 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~  595 (640)
                      ..++..++   .+.+.++.+.+..+|++|--+
T Consensus       585 ~~yP~~ls---~ea~~il~~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  585 VRYPRFLS---KEAIAIMRRLLRKNPEKRLGS  613 (694)
T ss_pred             CCCCCccc---HHHHHHHHHHhccCcccccCC
Confidence            22333333   345667777999999999876

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=8.8e-36  Score=304.20  Aligned_cols=249  Identities=22%  Similarity=0.326  Sum_probs=193.6

Q ss_pred             hhccccccCcceEEEEEeCC-----CcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEc-CCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVLDG-----GDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNG-KDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~-----~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~-~~~~~lV~E  407 (640)
                      ..++||+|+||.||+|....     +..|++|.+....   ..+.+.+|+.++++++|+||+++++++.. ....++++|
T Consensus        10 ~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~   89 (280)
T cd05043          10 LSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPPFVLYP   89 (280)
T ss_pred             EeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCCEEEEE
Confidence            35789999999999999765     6789999887542   23557788999999999999999999876 468999999


Q ss_pred             ccCCCCHHHhhccCCCC---CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          408 YLPHGSLHSLLHGSRGP---GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~---~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      |+++|+|.+++......   ....+++..+..++.|++.||+|||   +.+++||||||+||++++++.+||+|||+++.
T Consensus        90 ~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH---~~~i~H~di~p~nil~~~~~~~kl~d~g~~~~  166 (280)
T cd05043          90 YMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLH---KRGVIHKDIAARNCVIDEELQVKITDNALSRD  166 (280)
T ss_pred             cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCHhhEEEcCCCcEEECCCCCccc
Confidence            99999999998654311   1235899999999999999999999   45699999999999999999999999999986


Q ss_pred             cCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccc
Q 006559          485 FHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDES  555 (640)
Q Consensus       485 ~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~  555 (640)
                      +...        ...+..|+|||++       ....++.++|||||||++||+++ |+.||....  ..++.........
T Consensus       167 ~~~~~~~~~~~~~~~~~~y~apE~~-------~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~--~~~~~~~~~~~~~  237 (280)
T cd05043         167 LFPMDYHCLGDNENRPVKWMALESL-------VNKEYSSASDVWSFGVLLWELMTLGQTPYVEID--PFEMAAYLKDGYR  237 (280)
T ss_pred             ccCCceEEeCCCCCcchhccCHHHH-------hcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCC--HHHHHHHHHcCCC
Confidence            5321        2235579999964       33456789999999999999999 999997432  2222222211110


Q ss_pred             cccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          556 AWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       556 ~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      .        ...   ......+.+++.+||..+|++|||+.++++.|+++..+
T Consensus       238 ~--------~~~---~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~~~  279 (280)
T cd05043         238 L--------AQP---INCPDELFAVMACCWALDPEERPSFSQLVQCLTDFHAQ  279 (280)
T ss_pred             C--------CCC---CcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhc
Confidence            0        000   11223567888899999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=1.2e-36  Score=317.51  Aligned_cols=234  Identities=21%  Similarity=0.299  Sum_probs=183.1

Q ss_pred             ccccccCcceEEEEEe-CCCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          339 ELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      +.||+|+||.||+++. .++..||+|.+....     ....+..|++++..++||||+++.+++...+..|+||||+++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            3689999999999985 468899999987541     2244567888999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      +|.+++....     .+++..+..++.|++.||+|||+  ..+|+||||||+|||++.++.+||+|||+++....     
T Consensus        81 ~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~~lH~--~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~  153 (325)
T cd05594          81 ELFFHLSRER-----VFSEDRARFYGAEIVSALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATM  153 (325)
T ss_pred             cHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHh--cCCEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCccc
Confidence            9999887543     58899999999999999999995  24699999999999999999999999999875321     


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                       ...++..|+|||++       ....++.++|||||||++|||+||+.||......  ...+.....         ....
T Consensus       154 ~~~~gt~~y~aPE~~-------~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~--~~~~~i~~~---------~~~~  215 (325)
T cd05594         154 KTFCGTPEYLAPEVL-------EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE--KLFELILME---------EIRF  215 (325)
T ss_pred             ccccCCcccCCHHHH-------ccCCCCCccccccccceeeeeccCCCCCCCCCHH--HHHHHHhcC---------CCCC
Confidence             23468899999965       3345678999999999999999999999753321  111111110         0001


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRP-----NMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RP-----s~~~v~~  600 (640)
                      +...   ..++.+++.+|++.||++|+     ++.++++
T Consensus       216 p~~~---~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~  251 (325)
T cd05594         216 PRTL---SPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQ  251 (325)
T ss_pred             CCCC---CHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhc
Confidence            1111   22456677789999999997     8888864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=6.1e-36  Score=305.05  Aligned_cols=236  Identities=18%  Similarity=0.292  Sum_probs=182.3

Q ss_pred             ccccCcceEEEEEe-CCCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          341 LGKGCVGATYKVVL-DGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       341 iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ||+|+||.||+++. .+|+.+|+|.+....     ..+.+..|++++++++||||+++.+++......++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            69999999999985 458899999986431     233455689999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-----c
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-----F  489 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-----~  489 (640)
                      .+++....   ...+++..+..++.|++.||+|||   ..+|+||||||+||+++.++.+||+|||++......     .
T Consensus        81 ~~~~~~~~---~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~  154 (277)
T cd05607          81 KYHIYNVG---ERGLEMERVIHYSAQITCGILHLH---SMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTITQR  154 (277)
T ss_pred             HHHHHhcc---ccCCCHHHHHHHHHHHHHHHHHHH---HCCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCceeecc
Confidence            98886432   235789999999999999999999   456999999999999999999999999998765432     3


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcch--HHHHHHhhcccccccccchhhccC
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGI--VKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      .++..|+|||++       ....++.++||||+||++|||++|+.||.......  ....+.....         .....
T Consensus       155 ~~~~~y~aPE~~-------~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~---------~~~~~  218 (277)
T cd05607         155 AGTNGYMAPEIL-------KEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLED---------EVKFE  218 (277)
T ss_pred             CCCCCccCHHHH-------ccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHhhcc---------ccccc
Confidence            457799999964       33447789999999999999999999997432211  1111111110         00000


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                        ......++.+++..||+.||++||+++|+++
T Consensus       219 --~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~  249 (277)
T cd05607         219 --HQNFTEESKDICRLFLAKKPEDRLGSREKND  249 (277)
T ss_pred             --cccCCHHHHHHHHHHhccCHhhCCCCccchh
Confidence              0112234677788899999999999987653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=5.1e-36  Score=317.68  Aligned_cols=187  Identities=20%  Similarity=0.338  Sum_probs=160.8

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||+||+++.. +++.||||.+....     ....+..|+.++.+++|+||+++++.+.+....|+||||+++
T Consensus         6 ~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~E~~~g   85 (363)
T cd05628           6 LKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIMEFLPG   85 (363)
T ss_pred             eEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEEcCCCC
Confidence            467999999999999854 57899999987531     224567789999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....     .+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....    
T Consensus        86 g~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~~lH~---~givHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~  157 (363)
T cd05628          86 GDMMTLLMKKD-----TLTEEETQFYIAETVLAIDSIHQ---LGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRT  157 (363)
T ss_pred             CcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeEecCCCHHHeEECCCCCEEEeeccCcccccccccc
Confidence            99999997543     58899999999999999999994   5699999999999999999999999999865321    


Q ss_pred             -------------------------------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHH
Q 006559          488 -------------------------------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEIL  530 (640)
Q Consensus       488 -------------------------------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~  530 (640)
                                                           ...+|..|+|||++       ....++.++|||||||++|||+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~-------~~~~~~~~~DvwSlGvil~ell  230 (363)
T cd05628         158 EFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVF-------MQTGYNKLCDWWSLGVIMYEML  230 (363)
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccCCccccCHHHH-------cCCCCCCchhhhhhHHHHHHHH
Confidence                                                 12468899999975       3345778999999999999999


Q ss_pred             hCCCCCCCC
Q 006559          531 TGKMAKGDG  539 (640)
Q Consensus       531 tg~~p~~~~  539 (640)
                      +|+.||...
T Consensus       231 ~G~~Pf~~~  239 (363)
T cd05628         231 IGYPPFCSE  239 (363)
T ss_pred             hCCCCCCCC
Confidence            999999753

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=3e-36  Score=314.93  Aligned_cols=231  Identities=17%  Similarity=0.259  Sum_probs=177.1

Q ss_pred             ccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ++||+|+||.||+++.. +++.||+|.++...     ..+.+..|+.++.++ +||||+++++++...+..|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            36999999999999964 57889999987541     223456777777665 899999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC-----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----  486 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~-----  486 (640)
                      |+|..++....     .+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++...     
T Consensus        81 ~~L~~~~~~~~-----~l~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~  152 (329)
T cd05618          81 GDLMFHMQRQR-----KLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT  152 (329)
T ss_pred             CCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCc
Confidence            99998886543     58889999999999999999995   459999999999999999999999999987532     


Q ss_pred             -CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC------cchHHHHHHhhcccccccc
Q 006559          487 -TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGE------LGIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       487 -~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~------~~~~~~~~~~~~~~~~~~~  559 (640)
                       ....++..|+|||++       ....++.++|||||||++|||+||+.||....      .....++......      
T Consensus       153 ~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~------  219 (329)
T cd05618         153 TSTFCGTPNYIAPEIL-------RGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILE------  219 (329)
T ss_pred             cccccCCccccCHHHH-------cCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhc------
Confidence             123468899999965       34456789999999999999999999995211      1111121111110      


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCH
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNM  595 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~  595 (640)
                        .....+...   ..++.+++.+||+.||++||+.
T Consensus       220 --~~~~~p~~~---~~~~~~ll~~~L~~dP~~R~~~  250 (329)
T cd05618         220 --KQIRIPRSL---SVKAASVLKSFLNKDPKERLGC  250 (329)
T ss_pred             --CCCCCCCCC---CHHHHHHHHHHhcCCHHHcCCC
Confidence              001111111   2345677888999999999983

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-37  Score=309.44  Aligned_cols=234  Identities=21%  Similarity=0.349  Sum_probs=187.2

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccccch---HHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKK---REVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~---~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|.||.||+|.. ..++.||+|.+.....+   +++++|+.++..++|+||.+++|.+..+..++++||||.+|+
T Consensus        18 ~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~~gGs   97 (467)
T KOG0201|consen   18 LELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYCGGGS   97 (467)
T ss_pred             chhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHhcCcc
Confidence            47899999999999994 56889999999866443   457789999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC------C
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH------T  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~------~  487 (640)
                      +.+.++...     .++...+.-+.+++..||.|||+.+   .+|||||+.|||+..+|.+|++|||++....      .
T Consensus        98 v~~lL~~~~-----~~~E~~i~~ilre~l~~l~ylH~~~---kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr~  169 (467)
T KOG0201|consen   98 VLDLLKSGN-----ILDEFEIAVILREVLKGLDYLHSEK---KIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRRK  169 (467)
T ss_pred             hhhhhccCC-----CCccceeeeehHHHHHHhhhhhhcc---eecccccccceeEeccCcEEEEecceeeeeechhhccc
Confidence            999997553     3466667778899999999999654   9999999999999999999999999986653      3


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccch-hhcc
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF-ELIM  566 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~  566 (640)
                      .+++|+.|||||++       ....|+.|+||||+|++.+||++|.+|+.+-+..     +.      ...|... ....
T Consensus       170 tfvGTPfwMAPEVI-------~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPm-----rv------lflIpk~~PP~L  231 (467)
T KOG0201|consen  170 TFVGTPFWMAPEVI-------KQSGYDTKADIWSLGITAIELAKGEPPHSKLHPM-----RV------LFLIPKSAPPRL  231 (467)
T ss_pred             cccccccccchhhh-------ccccccchhhhhhhhHHHHHHhcCCCCCcccCcc-----eE------EEeccCCCCCcc
Confidence            56789999999975       3557889999999999999999999999753210     00      0111110 0011


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      +.   .....+.+++..|++.+|+.||++.++++
T Consensus       232 ~~---~~S~~~kEFV~~CL~k~P~~RpsA~~LLK  262 (467)
T KOG0201|consen  232 DG---DFSPPFKEFVEACLDKNPEFRPSAKELLK  262 (467)
T ss_pred             cc---ccCHHHHHHHHHHhhcCcccCcCHHHHhh
Confidence            11   23334556667799999999999998863

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=1.1e-35  Score=303.29  Aligned_cols=243  Identities=21%  Similarity=0.324  Sum_probs=189.2

Q ss_pred             hccccccCcceEEEEEe-CCCc----EEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVL-DGGD----VVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~----~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .++||+|+||+||+|++ .++.    .||+|.++...   ..+++.+|+.+++.++||||+++++++.. ...+++|||+
T Consensus        12 ~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~l~~~~~   90 (279)
T cd05109          12 VKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLT-STVQLVTQLM   90 (279)
T ss_pred             eeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-CCcEEEEEcC
Confidence            56899999999999985 3444    37999987542   24567788899999999999999999975 4578999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF  489 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~  489 (640)
                      ++|+|.++++...    ..+++...+.++.|++.||+|||+   .+|+||||||+|||+++++.+||+|||+++......
T Consensus        91 ~~g~l~~~l~~~~----~~~~~~~~~~~~~qi~~~L~~lH~---~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~  163 (279)
T cd05109          91 PYGCLLDYVRENK----DRIGSQDLLNWCVQIAKGMSYLEE---VRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDE  163 (279)
T ss_pred             CCCCHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccccceEEEcCCCcEEECCCCceeeccccc
Confidence            9999999997543    248899999999999999999994   569999999999999999999999999988654211


Q ss_pred             --------cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcc-hHHHHHHhhcccccccc
Q 006559          490 --------FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELG-IVKWVQMMGQDESAWEV  559 (640)
Q Consensus       490 --------~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~-~~~~~~~~~~~~~~~~~  559 (640)
                              ..+..|+|||..       ....++.++|||||||++|||+| |+.||...... ...++......      
T Consensus       164 ~~~~~~~~~~~~~y~~PE~~-------~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~------  230 (279)
T cd05109         164 TEYHADGGKVPIKWMALESI-------LHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREIPDLLEKGERL------  230 (279)
T ss_pred             ceeecCCCccchhhCCHHHh-------ccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCcC------
Confidence                    124579999964       34457789999999999999999 89998643221 22222111100      


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG  609 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~  609 (640)
                         .  ..   .....++.+++..||+.||++||++.++++.|+++..+.
T Consensus       231 ---~--~~---~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~~  272 (279)
T cd05109         231 ---P--QP---PICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRMARDP  272 (279)
T ss_pred             ---C--CC---ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcCC
Confidence               0  00   112345677888999999999999999999999887664

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.6e-37  Score=313.88  Aligned_cols=239  Identities=21%  Similarity=0.374  Sum_probs=190.6

Q ss_pred             hhccccccCcceEEEEE-eCCCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVV-LDGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..+.||.|+||.||.++ ..+.++||||++.-.     ....++..|++.|.+++|||+|.+.|+|..+...|||||||-
T Consensus        30 dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEYCl  109 (948)
T KOG0577|consen   30 DLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEYCL  109 (948)
T ss_pred             HHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHHHh
Confidence            34569999999999999 466789999998643     345778999999999999999999999999999999999995


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--C
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--P  488 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--~  488 (640)
                       |+-.+++.-.++    ++....+..|+.+...||+|||+.+   .||||||+.||||.+.|.+|++|||-+....+  .
T Consensus       110 -GSAsDlleVhkK----plqEvEIAAi~~gaL~gLaYLHS~~---~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PAns  181 (948)
T KOG0577|consen  110 -GSASDLLEVHKK----PLQEVEIAAITHGALQGLAYLHSHN---RIHRDIKAGNILLSEPGLVKLADFGSASIMAPANS  181 (948)
T ss_pred             -ccHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHhh---HHhhhccccceEecCCCeeeeccccchhhcCchhc
Confidence             577777754432    5788899999999999999999765   89999999999999999999999999887754  6


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      +++|+.|||||++..    ...+.|+.|+||||+|++..||..+++|....  +...-+-.+.+.       +.......
T Consensus       182 FvGTPywMAPEVILA----MDEGqYdgkvDvWSLGITCIELAERkPPlFnM--NAMSALYHIAQN-------esPtLqs~  248 (948)
T KOG0577|consen  182 FVGTPYWMAPEVILA----MDEGQYDGKVDVWSLGITCIELAERKPPLFNM--NAMSALYHIAQN-------ESPTLQSN  248 (948)
T ss_pred             ccCCccccchhHhee----ccccccCCccceeeccchhhhhhhcCCCccCc--hHHHHHHHHHhc-------CCCCCCCc
Confidence            789999999999763    45578899999999999999999999996532  222211111221       11112223


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVH  599 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~  599 (640)
                      +.++   .+..++-.|++.-|.+|||..+++
T Consensus       249 eWS~---~F~~Fvd~CLqKipqeRptse~ll  276 (948)
T KOG0577|consen  249 EWSD---YFRNFVDSCLQKIPQERPTSEELL  276 (948)
T ss_pred             hhHH---HHHHHHHHHHhhCcccCCcHHHHh
Confidence            3334   455566669999999999988765

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=8.8e-36  Score=300.22  Aligned_cols=239  Identities=27%  Similarity=0.376  Sum_probs=186.9

Q ss_pred             ccccccCcceEEEEEeCC----CcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKGCVGATYKVVLDG----GDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~----~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ++||+|+||.||+|++..    +..+|+|.+....   ..+++..|++++++++|+||+++++++. .+..++||||+++
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~   79 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMELAPL   79 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEeCCC
Confidence            369999999999998532    2579999988653   3456788999999999999999999876 4568999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc--
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF--  489 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~--  489 (640)
                      |+|.+++....     .+++..+..++.|++.||+|||.   .+++||||||+|||++.++.+||+|||+++......  
T Consensus        80 ~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lh~---~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~  151 (257)
T cd05060          80 GPLLKYLKKRR-----EIPVSDLKELAHQVAMGMAYLES---KHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDY  151 (257)
T ss_pred             CcHHHHHHhCC-----CCCHHHHHHHHHHHHHHHHHHhh---cCeeccCcccceEEEcCCCcEEeccccccceeecCCcc
Confidence            99999997543     57899999999999999999994   459999999999999999999999999987653211  


Q ss_pred             -------cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccc
Q 006559          490 -------FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFD  561 (640)
Q Consensus       490 -------~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  561 (640)
                             ..+..|+|||..       ....++.++|||||||++|||++ |+.||.....  .+..+........     
T Consensus       152 ~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~--~~~~~~~~~~~~~-----  217 (257)
T cd05060         152 YRATTAGRWPLKWYAPECI-------NYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKG--AEVIAMLESGERL-----  217 (257)
T ss_pred             cccccCccccccccCHHHh-------cCCCCCccchHHHHHHHHHHHHcCCCCCcccCCH--HHHHHHHHcCCcC-----
Confidence                   112469999954       34557789999999999999998 9999974322  1122211111100     


Q ss_pred             hhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       562 ~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                         ...   ......+.+++.+||..+|++||++.++++.|+++.
T Consensus       218 ---~~~---~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~~  256 (257)
T cd05060         218 ---PRP---EECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRDP  256 (257)
T ss_pred             ---CCC---CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhcc
Confidence               001   112345778888999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=1.1e-35  Score=299.49  Aligned_cols=241  Identities=24%  Similarity=0.345  Sum_probs=189.9

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEE-cCCeEEEEEeccCCCCHHH
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCN-GKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~-~~~~~~lV~Ey~~~gsL~~  416 (640)
                      .+.||+|+||.||++..+ +..||+|.++.....+.+..|+.++++++|+|++++++++. ..+..++||||+++|+|.+
T Consensus        11 ~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~L~~   89 (256)
T cd05082          11 LQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVD   89 (256)
T ss_pred             eeeecccCCCeEEEEEEc-CCcEEEEEeCCCchHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECCCCCcHHH
Confidence            567999999999999865 67789999877666677889999999999999999999865 4567899999999999999


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---Cccccc
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---PFFIND  493 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---~~~~~~  493 (640)
                      +++....   ..+++..++.++.|++.||+|||+   .+|+||||||+||++++++.+||+|||+++....   ....+.
T Consensus        90 ~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  163 (256)
T cd05082          90 YLRSRGR---SVLGGDCLLKFSLDVCEAMEYLEA---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV  163 (256)
T ss_pred             HHHhcCC---CCCCHHHHHHHHHHHHHHHHHHHh---CCEeccccchheEEEcCCCcEEecCCccceeccccCCCCccce
Confidence            9875432   247899999999999999999994   4599999999999999999999999999876532   222355


Q ss_pred             cccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHH
Q 006559          494 AYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEE  572 (640)
Q Consensus       494 ~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  572 (640)
                      .|+|||+.       ....++.++|||||||++|||++ |+.||.....  ............ .     .  ..   ..
T Consensus       164 ~y~aPE~~-------~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~--~~~~~~~~~~~~-~-----~--~~---~~  223 (256)
T cd05082         164 KWTAPEAL-------REKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL--KDVVPRVEKGYK-M-----D--AP---DG  223 (256)
T ss_pred             eecCHHHH-------ccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHhcCCC-C-----C--CC---CC
Confidence            79999964       33456789999999999999998 9999864322  222222111100 0     0  00   12


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          573 EMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       573 ~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                      ....+.+++.+||+.+|++|||+.++.+.|+++
T Consensus       224 ~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~~  256 (256)
T cd05082         224 CPPVVYDVMKQCWHLDAATRPSFLQLREQLEHI  256 (256)
T ss_pred             CCHHHHHHHHHHhcCChhhCcCHHHHHHHHhcC
Confidence            234567788899999999999999999999764

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=1.1e-35  Score=303.96  Aligned_cols=245  Identities=22%  Similarity=0.355  Sum_probs=189.3

Q ss_pred             hhccccccCcceEEEEEeCC------CcEEEEEEeccccc---hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVLDG------GDVVVVKRIRERKK---KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~------~~~vavK~l~~~~~---~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||.||+|+..+      +..||+|+++....   .+.+.+|+.++++++||||+++++++...+..++++|
T Consensus         9 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~e   88 (283)
T cd05091           9 FMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMIFS   88 (283)
T ss_pred             HHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEEEEE
Confidence            35679999999999998643      46799999975532   3557789999999999999999999999999999999


Q ss_pred             ccCCCCHHHhhccCC-----------CCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEE
Q 006559          408 YLPHGSLHSLLHGSR-----------GPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACI  476 (640)
Q Consensus       408 y~~~gsL~~~l~~~~-----------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl  476 (640)
                      |+++++|.+++....           ......+++..+.+++.|++.||+|||+   .+|+||||||+||++++++.+||
T Consensus        89 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~---~gi~H~dlkp~Nil~~~~~~~kl  165 (283)
T cd05091          89 YCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSS---HHVVHKDLATRNVLVFDKLNVKI  165 (283)
T ss_pred             cCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHH---cCccccccchhheEecCCCceEe
Confidence            999999999985321           0112357888999999999999999994   56999999999999999999999


Q ss_pred             ccCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHH
Q 006559          477 SDIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWV  547 (640)
Q Consensus       477 ~DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~  547 (640)
                      +|||+++.....        ...+..|+|||.+       ....++.++|||||||++|||+| |..||.+..  ...+.
T Consensus       166 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~--~~~~~  236 (283)
T cd05091         166 SDLGLFREVYAADYYKLMGNSLLPIRWMSPEAI-------MYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS--NQDVI  236 (283)
T ss_pred             cccccccccccchheeeccCccCCccccCHHHH-------hcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCC--HHHHH
Confidence            999998765321        1235679999964       33456789999999999999998 888886432  22233


Q ss_pred             HHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 006559          548 QMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIED  604 (640)
Q Consensus       548 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~  604 (640)
                      +........        ...   ......+.+++..||+.+|++||++.+|+..|+.
T Consensus       237 ~~i~~~~~~--------~~~---~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~~  282 (283)
T cd05091         237 EMIRNRQVL--------PCP---DDCPAWVYTLMLECWNEFPSRRPRFKDIHSRLRT  282 (283)
T ss_pred             HHHHcCCcC--------CCC---CCCCHHHHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence            222221100        001   1233446778889999999999999999998863

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=4e-36  Score=312.27  Aligned_cols=231  Identities=22%  Similarity=0.311  Sum_probs=176.6

Q ss_pred             ccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHh-ccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIG-GLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~-~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ++||+|+||.||+|+.. +++.||||.++...     ..+.+..|.+++. ..+||||+++++++...+..|+||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36999999999999965 47789999987541     1223344555555 35899999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....     .+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....    
T Consensus        81 g~L~~~~~~~~-----~~~~~~~~~~~~qi~~al~~LH~---~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~  152 (316)
T cd05592          81 GDLMFHIQSSG-----RFDEARARFYAAEIICGLQFLHK---KGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGK  152 (316)
T ss_pred             CcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCCc
Confidence            99999987543     47888899999999999999995   5699999999999999999999999999875421    


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                        ...++..|+|||++       ....++.++|||||||++|||++|+.||......  +........         ...
T Consensus       153 ~~~~~gt~~y~aPE~~-------~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~~--~~~~~i~~~---------~~~  214 (316)
T cd05592         153 ASTFCGTPDYIAPEIL-------KGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDED--ELFDSILND---------RPH  214 (316)
T ss_pred             cccccCCccccCHHHH-------cCCCCCCcccchhHHHHHHHHHhCCCCCCCCCHH--HHHHHHHcC---------CCC
Confidence              23468899999965       3445778999999999999999999999754321  111111111         000


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHH-HH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMS-IV  598 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~-~v  598 (640)
                      .+...   ..++.+++..||+.+|++||++. ++
T Consensus       215 ~~~~~---~~~~~~ll~~~l~~~P~~R~~~~~~l  245 (316)
T cd05592         215 FPRWI---SKEAKDCLSKLFERDPTKRLGVDGDI  245 (316)
T ss_pred             CCCCC---CHHHHHHHHHHccCCHHHcCCChHHH
Confidence            11111   22355677789999999999975 44

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=5.2e-36  Score=311.38  Aligned_cols=232  Identities=23%  Similarity=0.324  Sum_probs=178.7

Q ss_pred             ccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhc-cCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGG-LRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~-l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      +.||+|+||.||+|+.. ++..||||.++...     ..+.+..|.+++.. ++||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            36899999999999965 47889999987541     22334556666664 5899999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC-----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----  486 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~-----  486 (640)
                      |+|.+++....     .+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++...     
T Consensus        81 g~L~~~l~~~~-----~~~~~~~~~~~~qi~~al~~LH~---~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  152 (316)
T cd05619          81 GDLMFHIQSCH-----KFDLPRATFYAAEIICGLQFLHS---KGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAK  152 (316)
T ss_pred             CcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCc
Confidence            99999987542     47888999999999999999994   569999999999999999999999999987532     


Q ss_pred             -CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          487 -TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       487 -~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                       ....++..|+|||++       ....++.++|||||||++|||+||+.||.....  ....+......       +.  
T Consensus       153 ~~~~~gt~~y~aPE~~-------~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~--~~~~~~i~~~~-------~~--  214 (316)
T cd05619         153 TCTFCGTPDYIAPEIL-------LGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDE--EELFQSIRMDN-------PC--  214 (316)
T ss_pred             eeeecCCccccCHHHH-------cCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhCC-------CC--
Confidence             123457899999965       334577899999999999999999999975332  11111111100       00  


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHH-HHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMS-IVH  599 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~-~v~  599 (640)
                      .+....   .++.+++.+||+.||++||++. ++.
T Consensus       215 ~~~~~~---~~~~~li~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05619         215 YPRWLT---REAKDILVKLFVREPERRLGVKGDIR  246 (316)
T ss_pred             CCccCC---HHHHHHHHHHhccCHhhcCCChHHHH
Confidence            111112   2456677889999999999997 553

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=2.9e-36  Score=313.95  Aligned_cols=228  Identities=21%  Similarity=0.303  Sum_probs=177.8

Q ss_pred             ccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ++||+|+||.||+|+.. +++.||||.++...     ..+.+..|.+++..+ +||||+++++++...+..|+||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            36899999999999964 57899999987531     223455677777765 699999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC-----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----  486 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~-----  486 (640)
                      |+|.+++....     .+++..+..++.|++.||+|||   ..+|+||||||+|||++.++.+||+|||+++...     
T Consensus        81 g~L~~~i~~~~-----~l~~~~~~~~~~ql~~~L~~lH---~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~  152 (320)
T cd05590          81 GDLMFHIQKSR-----RFDEARARFYAAEITSALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKT  152 (320)
T ss_pred             chHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCc
Confidence            99999987543     4788999999999999999999   4569999999999999999999999999987532     


Q ss_pred             -CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          487 -TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       487 -~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                       ....++..|+|||++       ....++.++|||||||++|||+||+.||.....  ....+......         ..
T Consensus       153 ~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~--~~~~~~i~~~~---------~~  214 (320)
T cd05590         153 TSTFCGTPDYIAPEIL-------QEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENE--DDLFEAILNDE---------VV  214 (320)
T ss_pred             ccccccCccccCHHHH-------cCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH--HHHHHHHhcCC---------CC
Confidence             123468899999965       334567899999999999999999999975332  11122211110         01


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNM  595 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~  595 (640)
                      .+...   ..++.+++..|++.||++||++
T Consensus       215 ~~~~~---~~~~~~li~~~L~~dP~~R~~~  241 (320)
T cd05590         215 YPTWL---SQDAVDILKAFMTKNPTMRLGS  241 (320)
T ss_pred             CCCCC---CHHHHHHHHHHcccCHHHCCCC
Confidence            11111   2245667788999999999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=1.7e-35  Score=298.75  Aligned_cols=240  Identities=22%  Similarity=0.397  Sum_probs=188.2

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHH
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~  416 (640)
                      .+.||+|+||.||++...++..+|+|.+... ...+.+.+|++++++++|+|++++++++. .+..++||||+++|+|.+
T Consensus        11 ~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~L~~   89 (260)
T cd05069          11 DVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTEFMGKGSLLD   89 (260)
T ss_pred             eeeecCcCCCeEEEEEEcCCceEEEEEcccCCccHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEEcCCCCCHHH
Confidence            4679999999999999888778999988754 34466888999999999999999999875 456899999999999999


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-------c
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-------F  489 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-------~  489 (640)
                      +++...   ...++|..+..++.|++.||+|||   +.+++||||||+||++++++.+||+|||+++.....       .
T Consensus        90 ~~~~~~---~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  163 (260)
T cd05069          90 FLKEGD---GKYLKLPQLVDMAAQIADGMAYIE---RMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGA  163 (260)
T ss_pred             HHhhCC---CCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccCcceEEEcCCCeEEECCCccceEccCCcccccCCC
Confidence            997543   124789999999999999999999   456999999999999999999999999998765322       1


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..+..|+|||..       ....++.++|||||||++|||+| |+.||.+....  +..+.......        .... 
T Consensus       164 ~~~~~y~~Pe~~-------~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~--~~~~~~~~~~~--------~~~~-  225 (260)
T cd05069         164 KFPIKWTAPEAA-------LYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNR--EVLEQVERGYR--------MPCP-  225 (260)
T ss_pred             ccchhhCCHHHh-------ccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCCC--------CCCC-
Confidence            224579999953       34567789999999999999999 89998653211  11111111100        0011 


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIED  604 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~  604 (640)
                        ......+.+++.+||+.+|++||++.+|.+.|++
T Consensus       226 --~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         226 --QGCPESLHELMKLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             --cccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence              1223456777888999999999999999999975

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=2.8e-36  Score=314.29  Aligned_cols=232  Identities=20%  Similarity=0.315  Sum_probs=179.8

Q ss_pred             ccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ++||+|+||.||+|+.. +++.||||.++...     ..+.+..|.+++..+ +||||+++++++...+..|+||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            36999999999999865 47889999987541     223455677777755 799999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC-----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----  486 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~-----  486 (640)
                      |+|..++....     .+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++...     
T Consensus        81 ~~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~  152 (321)
T cd05591          81 GDLMFQIQRSR-----KFDEPRSRFYAAEVTLALMFLHR---HGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVT  152 (321)
T ss_pred             CcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEEeecccceecccCCcc
Confidence            99999887543     47889999999999999999994   559999999999999999999999999987532     


Q ss_pred             -CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          487 -TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       487 -~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                       ....++..|+|||++       ....++.++|||||||++|||+||+.||.....  ....+......         ..
T Consensus       153 ~~~~~gt~~y~aPE~~-------~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~--~~~~~~i~~~~---------~~  214 (321)
T cd05591         153 TTTFCGTPDYIAPEIL-------QELEYGPSVDWWALGVLMYEMMAGQPPFEADNE--DDLFESILHDD---------VL  214 (321)
T ss_pred             ccccccCccccCHHHH-------cCCCCCCccceechhHHHHHHhcCCCCCCCCCH--HHHHHHHHcCC---------CC
Confidence             123457899999964       344677899999999999999999999975332  11111111111         00


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCC-------CHHHHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRP-------NMSIVH  599 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RP-------s~~~v~  599 (640)
                      .+...   ..++.+++..|++.||++||       ++.++.
T Consensus       215 ~p~~~---~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~  252 (321)
T cd05591         215 YPVWL---SKEAVSILKAFMTKNPNKRLGCVASQGGEDAIK  252 (321)
T ss_pred             CCCCC---CHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHh
Confidence            11111   13456677889999999999       666665

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=4.4e-36  Score=313.82  Aligned_cols=230  Identities=18%  Similarity=0.261  Sum_probs=178.1

Q ss_pred             ccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ++||+|+||.||+++.. ++..||||.++...     ..+.+..|..++.++ +||||+++++++...+..|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            36899999999999864 57889999997541     223466788888887 799999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC-----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----  486 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~-----  486 (640)
                      |+|.+++....     .+++..+..++.|++.||+|||   ..+|+||||||+|||++.++.+||+|||+++...     
T Consensus        81 g~L~~~~~~~~-----~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~  152 (329)
T cd05588          81 GDLMFHMQRQR-----KLPEEHARFYSAEISLALNFLH---ERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDT  152 (329)
T ss_pred             CCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEECcCccccccccCCCc
Confidence            99999886543     5889999999999999999999   4569999999999999999999999999987521     


Q ss_pred             -CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC------cchHHHHHHhhcccccccc
Q 006559          487 -TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGE------LGIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       487 -~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~------~~~~~~~~~~~~~~~~~~~  559 (640)
                       ....++..|+|||++       ....++.++|||||||++|||+||+.||....      .....+.......      
T Consensus       153 ~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~------  219 (329)
T cd05588         153 TSTFCGTPNYIAPEIL-------RGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILE------  219 (329)
T ss_pred             cccccCCccccCHHHH-------cCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHc------
Confidence             123468899999965       33456789999999999999999999996311      1111121111111      


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCC
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPN  594 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs  594 (640)
                        .....+...   ..++.+++.+|++.||++||+
T Consensus       220 --~~~~~p~~~---~~~~~~li~~~L~~dP~~R~~  249 (329)
T cd05588         220 --KQIRIPRSL---SVKASSVLKGFLNKDPKERLG  249 (329)
T ss_pred             --CCCCCCCCC---CHHHHHHHHHHhccCHHHcCC
Confidence              011111111   234667788899999999997

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=1.6e-35  Score=305.07  Aligned_cols=251  Identities=22%  Similarity=0.349  Sum_probs=191.3

Q ss_pred             hccccccCcceEEEEEeCC-Cc--EEEEEEeccc---cchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLDG-GD--VVVVKRIRER---KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-~~--~vavK~l~~~---~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      .++||+|+||.||+|+..+ +.  .+++|.++..   ...+.+..|++++.++ +||||+++++++...+..++||||++
T Consensus         7 ~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~   86 (297)
T cd05089           7 EDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIAIEYAP   86 (297)
T ss_pred             eeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEEEEecC
Confidence            5679999999999998654 32  4788887743   2335678899999998 79999999999999999999999999


Q ss_pred             CCCHHHhhccCCCC-----------CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccC
Q 006559          411 HGSLHSLLHGSRGP-----------GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDI  479 (640)
Q Consensus       411 ~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~Df  479 (640)
                      +|+|.++++.....           ....+++..+..++.|++.||+|||   +.+|+||||||+|||+++++.+||+||
T Consensus        87 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~kl~df  163 (297)
T cd05089          87 YGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLS---EKQFIHRDLAARNVLVGENLASKIADF  163 (297)
T ss_pred             CCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCcCCcceEEECCCCeEEECCc
Confidence            99999999754210           1124788999999999999999999   456999999999999999999999999


Q ss_pred             CcccccCCC-----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcc
Q 006559          480 GVHQLFHTP-----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQD  553 (640)
Q Consensus       480 Gl~~~~~~~-----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~  553 (640)
                      |++......     ...+..|+|||+.       ....++.++|||||||++|||+| |+.||.....  ..........
T Consensus       164 g~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~--~~~~~~~~~~  234 (297)
T cd05089         164 GLSRGEEVYVKKTMGRLPVRWMAIESL-------NYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTC--AELYEKLPQG  234 (297)
T ss_pred             CCCccccceeccCCCCcCccccCchhh-------ccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH--HHHHHHHhcC
Confidence            998653211     1124469999954       34557789999999999999998 9999964322  1112211111


Q ss_pred             cccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCCC
Q 006559          554 ESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSI  611 (640)
Q Consensus       554 ~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~~  611 (640)
                      .      ...  ...   .....+.+++.+||+.+|.+||++.++++.|+++..+...
T Consensus       235 ~------~~~--~~~---~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~~~~  281 (297)
T cd05089         235 Y------RME--KPR---NCDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEARKA  281 (297)
T ss_pred             C------CCC--CCC---CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhcc
Confidence            0      000  011   1223567788899999999999999999999998866543

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=1.2e-35  Score=303.37  Aligned_cols=232  Identities=19%  Similarity=0.243  Sum_probs=178.7

Q ss_pred             ccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          341 LGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       341 iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ||+|+||+||++... +++.||||.+....     ..+.+..|++++++++|+||+++.+++......++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            699999999999854 67899999986542     124456789999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------C
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------P  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------~  488 (640)
                      .+++..... ....+++..+..++.|++.||+|||+   .+|+||||||+||++++++.+||+|||+++....      .
T Consensus        81 ~~~~~~~~~-~~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~  156 (280)
T cd05608          81 RYHIYNVDE-ENPGFPEPRACFYTAQIISGLEHLHQ---RRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKG  156 (280)
T ss_pred             HHHHHhccc-cCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCccccc
Confidence            988754321 12358899999999999999999994   5699999999999999999999999999876532      2


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcch--HHHHHHhhcccccccccchhhcc
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGI--VKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                      ..++..|+|||++       ....++.++|||||||++|||+||+.||.......  ....+..         .......
T Consensus       157 ~~g~~~y~aPE~~-------~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~---------~~~~~~~  220 (280)
T cd05608         157 YAGTPGFMAPELL-------QGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRI---------LNDSVTY  220 (280)
T ss_pred             cCCCcCccCHHHh-------cCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHHhh---------cccCCCC
Confidence            3457789999964       34466789999999999999999999997532211  1111111         1111111


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNM  595 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~  595 (640)
                      +.   .....+.+++..||+.||++||++
T Consensus       221 ~~---~~~~~~~~li~~~l~~~P~~R~~~  246 (280)
T cd05608         221 PD---KFSPASKSFCEALLAKDPEKRLGF  246 (280)
T ss_pred             cc---cCCHHHHHHHHHHhcCCHHHhcCC
Confidence            11   122346677788999999999944

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=2.5e-35  Score=298.94  Aligned_cols=251  Identities=20%  Similarity=0.251  Sum_probs=181.0

Q ss_pred             cccccCcceEEEEEeCCCc---EEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          340 LLGKGCVGATYKVVLDGGD---VVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~~~~---~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .||+|+||.||++...++.   .+++|.+....   ..+.+.+|+.+++.++||||++++++|......|+||||+++|+
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   81 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGD   81 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCc
Confidence            5899999999999854433   45677665432   34567888899999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC-------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-------  486 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~-------  486 (640)
                      |.++++..... ...+++.....++.|+++||+|||+   .+++||||||+|||++.++.+||+|||++....       
T Consensus        82 L~~~l~~~~~~-~~~~~~~~~~~~~~~i~~al~~lH~---~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~  157 (268)
T cd05086          82 LKSYLSQEQWH-RRNSQLLLLQRMACEIAAGVTHMHK---HNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIET  157 (268)
T ss_pred             HHHHHHhhhcc-cccccHHHHHHHHHHHHHHHHHHHH---CCeeccCCccceEEEcCCccEEecccccccccCcchhhhc
Confidence            99999754321 2245677788999999999999994   559999999999999999999999999976421       


Q ss_pred             -CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          487 -TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       487 -~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                       ....++..|+|||+............++.++|||||||++|||++ |+.||....  ..+........ ......++.+
T Consensus       158 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~--~~~~~~~~~~~-~~~~~~~~~~  234 (268)
T cd05086         158 EDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLS--DREVLNHVIKD-QQVKLFKPQL  234 (268)
T ss_pred             ccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHhh-cccccCCCcc
Confidence             122346789999976432211223356789999999999999997 566775422  11212111111 1111222222


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIE  603 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~  603 (640)
                      ...  ..+   ++.+++..|| .+|++||++++|++.|.
T Consensus       235 ~~~--~~~---~~~~l~~~c~-~~P~~Rp~~~~i~~~l~  267 (268)
T cd05086         235 ELP--YSE---RWYEVLQFCW-LSPEKRATAEEVHRLLT  267 (268)
T ss_pred             CCC--CcH---HHHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence            111  122   3455666799 57999999999998874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=1.6e-35  Score=298.93  Aligned_cols=241  Identities=23%  Similarity=0.391  Sum_probs=190.1

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ..+.||+|+||.||+|...++..+|+|.+... ...+.+.+|+.++++++|+|++++++++. ....++||||+++++|.
T Consensus        10 ~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~~~~~L~   88 (260)
T cd05070          10 LIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVTEYMSKGSLL   88 (260)
T ss_pred             hhheeccccCceEEEEEecCCceeEEEEecCCCCCHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEEEecCCCcHH
Confidence            35679999999999999888888999998764 34567889999999999999999999875 45689999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc------
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------  489 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~------  489 (640)
                      ++++...   ...+++..+..++.|++.||+|||+   .+|+||||||+||++++++.+||+|||++.......      
T Consensus        89 ~~~~~~~---~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~  162 (260)
T cd05070          89 DFLKDGE---GRALKLPNLVDMAAQVAAGMAYIER---MNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQG  162 (260)
T ss_pred             HHHHhcC---CCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCccceEEEeCCceEEeCCceeeeeccCcccccccC
Confidence            9997542   1247899999999999999999994   559999999999999999999999999987654321      


Q ss_pred             -cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          490 -FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       490 -~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                       ..+..|+|||+.       ....++.++|||||||++|||++ |+.||.+...  .+..+.......      ..  ..
T Consensus       163 ~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~--~~~~~~~~~~~~------~~--~~  225 (260)
T cd05070         163 AKFPIKWTAPEAA-------LYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNN--REVLEQVERGYR------MP--CP  225 (260)
T ss_pred             CCCCccccChHHH-------hcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCH--HHHHHHHHcCCC------CC--CC
Confidence             123469999964       33457789999999999999999 8899864321  111221111100      00  01


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIED  604 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~  604 (640)
                         ......+.+++.+|+..+|++|||+.++.+.|++
T Consensus       226 ---~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         226 ---QDCPISLHELMLQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             ---CcCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence               1223457788899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=1.4e-35  Score=303.42  Aligned_cols=245  Identities=24%  Similarity=0.385  Sum_probs=188.1

Q ss_pred             HhhccccccCcceEEEEEe-----CCCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcC--CeEEEE
Q 006559          336 SSAELLGKGCVGATYKVVL-----DGGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGK--DELFLV  405 (640)
Q Consensus       336 ~~~~~iG~G~fg~Vy~~~~-----~~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lV  405 (640)
                      ...+.||+|+||.||++++     .++..||+|.++..   .....+.+|++++++++||||+++.+++...  ...++|
T Consensus         7 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv   86 (284)
T cd05079           7 KRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLI   86 (284)
T ss_pred             hhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceEEE
Confidence            4456799999999999984     34678999998744   2235678899999999999999999998875  568999


Q ss_pred             EeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccccc
Q 006559          406 YDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF  485 (640)
Q Consensus       406 ~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~  485 (640)
                      |||+++++|.+++....    ..++|..+..++.|++.||+|||   ..+|+||||||+||+++.++.+||+|||+++..
T Consensus        87 ~e~~~g~~L~~~l~~~~----~~~~~~~~~~i~~~i~~aL~~lH---~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~  159 (284)
T cd05079          87 MEFLPSGSLKEYLPRNK----NKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAI  159 (284)
T ss_pred             EEccCCCCHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccchheEEEcCCCCEEECCCcccccc
Confidence            99999999999986542    24789999999999999999999   456999999999999999999999999998765


Q ss_pred             CCC---------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-------------h
Q 006559          486 HTP---------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-------------I  543 (640)
Q Consensus       486 ~~~---------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-------------~  543 (640)
                      ...         ...+..|+|||++       ....++.++|||||||++|||+|++.|.......             .
T Consensus       160 ~~~~~~~~~~~~~~~~~~y~apE~~-------~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~  232 (284)
T cd05079         160 ETDKEYYTVKDDLDSPVFWYAPECL-------IQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTV  232 (284)
T ss_pred             ccCccceeecCCCCCCccccCHHHh-------ccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccH
Confidence            321         2234569999964       3345778999999999999999987764321110             1


Q ss_pred             HHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          544 VKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       544 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                      ..++.......        ....   ......++.+++.+||+.+|++||++.++++.++++
T Consensus       233 ~~~~~~~~~~~--------~~~~---~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         233 TRLVRVLEEGK--------RLPR---PPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             HHHHHHHHcCc--------cCCC---CCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence            11111111000        0000   012334688889999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-36  Score=303.05  Aligned_cols=240  Identities=22%  Similarity=0.271  Sum_probs=184.6

Q ss_pred             hccccccCcceEEEEE-eCCCcEEEEEEeccccc----------------hHHHHHHHHHHhccCCCcccceeEEEEcC-
Q 006559          338 AELLGKGCVGATYKVV-LDGGDVVVVKRIRERKK----------------KREVDEWLRVIGGLRHSNIVSIRAYCNGK-  399 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~~~----------------~~~~~~e~~~l~~l~H~niv~l~~~~~~~-  399 (640)
                      .+.||+|.||.|-+|+ ..+++.||||++.+...                -+.+.+||.+|++++|||||+|+++..+. 
T Consensus       102 ~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~LiEvLDDP~  181 (576)
T KOG0585|consen  102 IKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLIEVLDDPE  181 (576)
T ss_pred             hhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEEEeecCcc
Confidence            4579999999999999 45789999999865311                13577899999999999999999998764 


Q ss_pred             -CeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEcc
Q 006559          400 -DELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISD  478 (640)
Q Consensus       400 -~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~D  478 (640)
                       +.+|||+|||..|.+...-..     ...++..+..+|.+++..||+|||.++   ||||||||+|+||+++|++||+|
T Consensus       182 s~~~YlVley~s~G~v~w~p~d-----~~els~~~Ar~ylrDvv~GLEYLH~Qg---iiHRDIKPsNLLl~~~g~VKIsD  253 (576)
T KOG0585|consen  182 SDKLYLVLEYCSKGEVKWCPPD-----KPELSEQQARKYLRDVVLGLEYLHYQG---IIHRDIKPSNLLLSSDGTVKISD  253 (576)
T ss_pred             cCceEEEEEeccCCccccCCCC-----cccccHHHHHHHHHHHHHHHHHHHhcC---eeccccchhheEEcCCCcEEeec
Confidence             589999999999987543221     112888999999999999999999654   99999999999999999999999


Q ss_pred             CCcccccCC-----------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHH
Q 006559          479 IGVHQLFHT-----------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWV  547 (640)
Q Consensus       479 fGl~~~~~~-----------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~  547 (640)
                      ||.+..+..           ...+|+.|+|||+.++...   ....+.+.||||+||+||-|+.|+.||-++.  ..+..
T Consensus       254 FGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~---~~~~g~a~DiWalGVTLYCllfG~~PF~~~~--~~~l~  328 (576)
T KOG0585|consen  254 FGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNS---FSYSGFALDIWALGVTLYCLLFGQLPFFDDF--ELELF  328 (576)
T ss_pred             cceeeecccCCccccHHHHhhcCCCccccchHhhcCCCC---ccccchhhhhhhhhhhHHHhhhccCCcccch--HHHHH
Confidence            999886621           2357999999998765321   1223467899999999999999999997532  11111


Q ss_pred             HHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          548 QMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       548 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                               ..|+...+..+ ..++...++.+++.++|.+||++|.+..+|..
T Consensus       329 ---------~KIvn~pL~fP-~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~  371 (576)
T KOG0585|consen  329 ---------DKIVNDPLEFP-ENPEINEDLKDLIKRLLEKDPEQRITLPDIKL  371 (576)
T ss_pred             ---------HHHhcCcccCC-CcccccHHHHHHHHHHhhcChhheeehhhhee
Confidence                     12223233222 22244456677788899999999999888864

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=1.2e-35  Score=305.20  Aligned_cols=247  Identities=22%  Similarity=0.379  Sum_probs=190.6

Q ss_pred             hhccccccCcceEEEEEeCC------CcEEEEEEeccccc---hHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEE
Q 006559          337 SAELLGKGCVGATYKVVLDG------GDVVVVKRIRERKK---KREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVY  406 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~------~~~vavK~l~~~~~---~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~  406 (640)
                      ..+.||+|+||.||++...+      ...+|+|.+.....   ..++.+|+.++.++ +|+||+++++++...+..++||
T Consensus        16 ~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~li~   95 (293)
T cd05053          16 LGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGPLYVVV   95 (293)
T ss_pred             EeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCCCeEEEE
Confidence            35679999999999998642      35789999875422   24567889999999 8999999999999999999999


Q ss_pred             eccCCCCHHHhhccCCC-----------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeE
Q 006559          407 DYLPHGSLHSLLHGSRG-----------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNAC  475 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~-----------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~k  475 (640)
                      ||+++|+|.++++....           .....+++..+++++.|++.||+|||   ..+|+||||||+||+++.++.+|
T Consensus        96 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~Nil~~~~~~~k  172 (293)
T cd05053          96 EYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLA---SKKCIHRDLAARNVLVTEDHVMK  172 (293)
T ss_pred             EeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---HCCccccccceeeEEEcCCCeEE
Confidence            99999999999864320           11236889999999999999999999   45699999999999999999999


Q ss_pred             EccCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHH
Q 006559          476 ISDIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKW  546 (640)
Q Consensus       476 l~DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~  546 (640)
                      |+|||+++.....        ...+..|+|||+.       ....++.++|||||||++|||++ |..||......  +.
T Consensus       173 L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~  243 (293)
T cd05053         173 IADFGLARDIHHIDYYRKTTNGRLPVKWMAPEAL-------FDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVE--EL  243 (293)
T ss_pred             eCccccccccccccceeccCCCCCCccccCHHHh-------ccCCcCcccceeehhhHHHHHhcCCCCCCCCCCHH--HH
Confidence            9999998865421        1124569999954       34567789999999999999998 88998643211  11


Q ss_pred             HHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          547 VQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       547 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                      .+........        ...   .....++.+++.+||+.+|++|||+.++++.|+++.
T Consensus       244 ~~~~~~~~~~--------~~~---~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~~  292 (293)
T cd05053         244 FKLLKEGYRM--------EKP---QNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRML  292 (293)
T ss_pred             HHHHHcCCcC--------CCC---CCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHhh
Confidence            1111111000        000   122345778899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=2.2e-35  Score=305.09  Aligned_cols=249  Identities=20%  Similarity=0.357  Sum_probs=192.3

Q ss_pred             hhccccccCcceEEEEEeC--------CCcEEEEEEeccc---cchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEE
Q 006559          337 SAELLGKGCVGATYKVVLD--------GGDVVVVKRIRER---KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFL  404 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~--------~~~~vavK~l~~~---~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  404 (640)
                      ..+.||+|+||.||+++..        ++..||+|.+...   ...+.+.+|+.+++.+ +||||+++++++...+..++
T Consensus        19 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~l   98 (304)
T cd05101          19 LGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYV   98 (304)
T ss_pred             ecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecCCceEE
Confidence            3578999999999999742        2347999988754   2235678899999999 89999999999999999999


Q ss_pred             EEeccCCCCHHHhhccCCCC-----------CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC
Q 006559          405 VYDYLPHGSLHSLLHGSRGP-----------GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN  473 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~  473 (640)
                      ||||+++|+|.+++......           ....++|..++.++.|++.||+|||+   .+|+||||||+||+++.++.
T Consensus        99 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~---~givH~dlkp~Nili~~~~~  175 (304)
T cd05101          99 IVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLAS---QKCIHRDLAARNVLVTENNV  175 (304)
T ss_pred             EEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHH---CCeeecccccceEEEcCCCc
Confidence            99999999999999754321           12357889999999999999999994   56999999999999999999


Q ss_pred             eEEccCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchH
Q 006559          474 ACISDIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIV  544 (640)
Q Consensus       474 ~kl~DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~  544 (640)
                      +||+|||+++.....        ...+..|+|||++       ....++.++|||||||++|||+| |..||....  ..
T Consensus       176 ~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~--~~  246 (304)
T cd05101         176 MKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEAL-------FDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP--VE  246 (304)
T ss_pred             EEECCCccceecccccccccccCCCCCceeeCchhh-------ccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC--HH
Confidence            999999998765321        1224579999964       33457789999999999999999 788886432  22


Q ss_pred             HHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          545 KWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       545 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ++.+........        ...   ......+.+++.+||+.+|++||+|.++++.|+++...
T Consensus       247 ~~~~~~~~~~~~--------~~~---~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~  299 (304)
T cd05101         247 ELFKLLKEGHRM--------DKP---ANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRILTL  299 (304)
T ss_pred             HHHHHHHcCCcC--------CCC---CCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHHHh
Confidence            222222211100        001   12234567788889999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=9.6e-36  Score=299.82  Aligned_cols=239  Identities=23%  Similarity=0.328  Sum_probs=187.7

Q ss_pred             ccccccCcceEEEEEeCC--Cc--EEEEEEeccccc---hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKGCVGATYKVVLDG--GD--VVVVKRIRERKK---KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~--~~--~vavK~l~~~~~---~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ++||+|+||.||+|.+..  +.  .||||.+.....   .+.+..|++++++++||||+++++++.. ...++||||+++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAPL   79 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecCC
Confidence            468999999999998643  32  589999986633   4567889999999999999999999988 899999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---  488 (640)
                      |+|.+++.....   ..++|.....++.|++.||+|||   ..+++||||||+||+++.++.+||+|||+++.....   
T Consensus        80 ~~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~  153 (257)
T cd05040          80 GSLLDRLRKDAL---GHFLISTLCDYAVQIANGMRYLE---SKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDH  153 (257)
T ss_pred             CcHHHHHHhccc---ccCcHHHHHHHHHHHHHHHHHHH---hCCccccccCcccEEEecCCEEEeccccccccccccccc
Confidence            999999976431   35899999999999999999999   456999999999999999999999999998765431   


Q ss_pred             ------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccc
Q 006559          489 ------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFD  561 (640)
Q Consensus       489 ------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  561 (640)
                            ...+..|+|||.+       ....++.++|||||||++|||+| |+.||.....  .+..+........     
T Consensus       154 ~~~~~~~~~~~~y~~pE~~-------~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~--~~~~~~~~~~~~~-----  219 (257)
T cd05040         154 YVMEEHLKVPFAWCAPESL-------RTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSG--SQILKKIDKEGER-----  219 (257)
T ss_pred             eecccCCCCCceecCHHHh-------cccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHhcCCc-----
Confidence                  2235679999953       44567789999999999999999 9999864221  1111111111100     


Q ss_pred             hhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 006559          562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIE  603 (640)
Q Consensus       562 ~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~  603 (640)
                        ....   ......+.+++.+||+.+|++||++.++++.|.
T Consensus       220 --~~~~---~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  256 (257)
T cd05040         220 --LERP---EACPQDIYNVMLQCWAHNPADRPTFAALREFLP  256 (257)
T ss_pred             --CCCC---ccCCHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence              0001   112345777888999999999999999998875

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=1.3e-35  Score=301.20  Aligned_cols=241  Identities=23%  Similarity=0.388  Sum_probs=189.0

Q ss_pred             hhccccccCcceEEEEEeCC-C---cEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLDG-G---DVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~-~---~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ..+.||+|+||.||+|.... +   ..||||.+...   ...+++..|+.++++++||||+++.+++......++||||+
T Consensus         8 ~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~   87 (269)
T cd05065           8 IEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIITEFM   87 (269)
T ss_pred             EEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEEEecC
Confidence            35789999999999998643 3   36999998754   23457888999999999999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF  489 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~  489 (640)
                      ++|+|.+++....+    .+++..++.++.|++.||+|||+   .+++||||||+||+++.++.+|++|||+++......
T Consensus        88 ~~~~L~~~l~~~~~----~~~~~~~~~i~~~l~~al~~lH~---~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~  160 (269)
T cd05065          88 ENGALDSFLRQNDG----QFTVIQLVGMLRGIAAGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDT  160 (269)
T ss_pred             CCCcHHHHHhhCCC----CCCHHHHHHHHHHHHHHHHHHHH---CCEeecccChheEEEcCCCcEEECCCccccccccCc
Confidence            99999999875432    47899999999999999999994   569999999999999999999999999987653211


Q ss_pred             -----c------ccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCc-chHHHHHHhhccccc
Q 006559          490 -----F------INDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGEL-GIVKWVQMMGQDESA  556 (640)
Q Consensus       490 -----~------~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~-~~~~~~~~~~~~~~~  556 (640)
                           .      .+..|+|||.+       ....++.++|||||||++||+++ |+.||..... ....++.   ...  
T Consensus       161 ~~~~~~~~~~~~~~~~y~~PE~~-------~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~~~~~~i~---~~~--  228 (269)
T cd05065         161 SDPTYTSSLGGKIPIRWTAPEAI-------AYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVINAIE---QDY--  228 (269)
T ss_pred             cccccccccCCCcceeecCHhHh-------ccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHH---cCC--
Confidence                 1      12369999953       44567889999999999999987 9999864321 1222221   110  


Q ss_pred             ccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          557 WEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       557 ~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                            .....   .+....+.+++..||+.+|++||+|.+|...|+++
T Consensus       229 ------~~~~~---~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         229 ------RLPPP---MDCPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             ------cCCCc---ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence                  00011   12234567788889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=2.3e-35  Score=297.17  Aligned_cols=236  Identities=26%  Similarity=0.368  Sum_probs=183.0

Q ss_pred             ccccccCcceEEEEEeCCCc-----------EEEEEEeccccc-hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEE
Q 006559          339 ELLGKGCVGATYKVVLDGGD-----------VVVVKRIRERKK-KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVY  406 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~~-----------~vavK~l~~~~~-~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~  406 (640)
                      +.||+|+||.||+|...+..           .+++|.+..... ...+.+|+.++++++||||+++++++.. +..++||
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv~   79 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKHLVKLYGVCVR-DENIMVE   79 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCCCcchhheeeEEec-CCcEEEE
Confidence            46899999999999975433           477787765533 5678889999999999999999999988 7889999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC-------CeEEccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG-------NACISDI  479 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~-------~~kl~Df  479 (640)
                      ||+++|+|.+++.....    .+++..++.++.|++.||+|||+   .+|+||||||+|||++.++       .+||+||
T Consensus        80 e~~~~~~L~~~l~~~~~----~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Df  152 (259)
T cd05037          80 EYVKFGPLDVFLHREKN----NVSLHWKLDVAKQLASALHYLED---KKLVHGNVCGKNILVARYGLNEGYVPFIKLSDP  152 (259)
T ss_pred             EcCCCCcHHHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHhh---CCeecccCccceEEEecCccccCCceeEEeCCC
Confidence            99999999999976432    57889999999999999999994   5699999999999999888       7999999


Q ss_pred             CcccccCC--CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhccccc
Q 006559          480 GVHQLFHT--PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESA  556 (640)
Q Consensus       480 Gl~~~~~~--~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~  556 (640)
                      |+++....  ....+..|+|||++...     ...++.++|||||||++|||++ |..|+....  ...+........  
T Consensus       153 g~a~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~--~~~~~~~~~~~~--  223 (259)
T cd05037         153 GIPITVLSREERVERIPWIAPECIRNG-----QASLTIAADKWSFGTTLLEICSNGEEPLSTLS--SSEKERFYQDQH--  223 (259)
T ss_pred             CcccccccccccccCCCccChhhhcCC-----CCCcchhhHHHHHHHHHHHHHhCCCCCcccCC--chhHHHHHhcCC--
Confidence            99887543  23346679999965321     1356789999999999999999 577775432  111111111100  


Q ss_pred             ccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 006559          557 WEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMI  602 (640)
Q Consensus       557 ~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L  602 (640)
                            ..... .    ...+.+++.+||..+|++||++.++++.|
T Consensus       224 ------~~~~~-~----~~~~~~li~~~l~~~p~~Rpt~~~il~~l  258 (259)
T cd05037         224 ------RLPMP-D----CAELANLINQCWTYDPTKRPSFRAILRDL  258 (259)
T ss_pred             ------CCCCC-C----chHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence                  00000 0    14677888999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=2.5e-35  Score=306.61  Aligned_cols=191  Identities=23%  Similarity=0.401  Sum_probs=155.9

Q ss_pred             hccccccCcceEEEEEeC---CCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEc--CCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD---GGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNG--KDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~---~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~--~~~~~lV~Ey~~~g  412 (640)
                      ..+||+|+||+||+|+..   .+..||+|.+........+.+|++++++++||||+++++++..  ....++||||+. +
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~-~   84 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE-H   84 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCCcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC-C
Confidence            457999999999999864   4578999999766556667889999999999999999999864  456899999986 4


Q ss_pred             CHHHhhccCCC----CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE----CCCCCeEEccCCcccc
Q 006559          413 SLHSLLHGSRG----PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV----DQLGNACISDIGVHQL  484 (640)
Q Consensus       413 sL~~~l~~~~~----~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl----~~~~~~kl~DfGl~~~  484 (640)
                      +|.+++.....    .....+++..+..++.|++.||+|||+   .+|+||||||+|||+    +.++.+||+|||+++.
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~  161 (317)
T cd07868          85 DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPERGRVKIADMGFARL  161 (317)
T ss_pred             CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHh---CCEEcCCCCHHHEEEecCCCCcCcEEEeecCceec
Confidence            88887753321    112358888999999999999999995   459999999999999    4668999999999987


Q ss_pred             cCC---------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCC
Q 006559          485 FHT---------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD  538 (640)
Q Consensus       485 ~~~---------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~  538 (640)
                      ...         ...+|..|+|||++.+      ...++.++||||+||++|||+||+.||..
T Consensus       162 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~------~~~~~~~~DiwslG~il~el~~g~~~f~~  218 (317)
T cd07868         162 FNSPLKPLADLDPVVVTFWYRAPELLLG------ARHYTKAIDIWAIGCIFAELLTSEPIFHC  218 (317)
T ss_pred             cCCCCccccccCCccccccccCCHHHcC------CCCcCchhhHHHHHHHHHHHHhCCCCccC
Confidence            542         2345788999997532      23467899999999999999999999974

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=2.3e-35  Score=303.54  Aligned_cols=249  Identities=21%  Similarity=0.325  Sum_probs=188.6

Q ss_pred             hccccccCcceEEEEEeCC-----------------CcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEE
Q 006559          338 AELLGKGCVGATYKVVLDG-----------------GDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCN  397 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-----------------~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~  397 (640)
                      .+.||+|+||.||+++..+                 +..||+|.+....   ..+++.+|++++++++||||+++++++.
T Consensus        10 ~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~   89 (296)
T cd05051          10 VEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARLLGVCT   89 (296)
T ss_pred             cccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEEEEEEe
Confidence            5679999999999988543                 2458999987652   3456788999999999999999999999


Q ss_pred             cCCeEEEEEeccCCCCHHHhhccCCCC------CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC
Q 006559          398 GKDELFLVYDYLPHGSLHSLLHGSRGP------GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL  471 (640)
Q Consensus       398 ~~~~~~lV~Ey~~~gsL~~~l~~~~~~------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~  471 (640)
                      ..+..++||||+++++|.+++......      ....+++..++.++.|++.||+|||+   .+|+||||||+||+++.+
T Consensus        90 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~---~~i~H~dlkp~Nili~~~  166 (296)
T cd05051          90 VDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLES---LNFVHRDLATRNCLVGKN  166 (296)
T ss_pred             cCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHH---cCccccccchhceeecCC
Confidence            999999999999999999999765421      12258999999999999999999995   459999999999999999


Q ss_pred             CCeEEccCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh--CCCCCCCCCc
Q 006559          472 GNACISDIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT--GKMAKGDGEL  541 (640)
Q Consensus       472 ~~~kl~DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t--g~~p~~~~~~  541 (640)
                      +.++|+|||+++.....        ...+..|+|||++       ....++.++|||||||++|||++  |..||.....
T Consensus       167 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~  239 (296)
T cd05051         167 YTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESV-------LLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTD  239 (296)
T ss_pred             CceEEccccceeecccCcceeecCcCCCCceecCHHHh-------hcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcCh
Confidence            99999999998764321        1235579999964       33457789999999999999998  6777754221


Q ss_pred             -chHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 006559          542 -GIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIE  603 (640)
Q Consensus       542 -~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~  603 (640)
                       ....................    ..   .....++.+++.+||+.+|++||++.++++.|+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~  295 (296)
T cd05051         240 QQVIENAGHFFRDDGRQIYLP----RP---PNCPKDIYELMLECWRRDEEDRPTFREIHLFLQ  295 (296)
T ss_pred             HHHHHHHHhccccccccccCC----Cc---cCCCHHHHHHHHHHhccChhcCCCHHHHHHHhc
Confidence             11111111111000000000    00   112246788999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=1.8e-35  Score=303.57  Aligned_cols=249  Identities=21%  Similarity=0.312  Sum_probs=178.3

Q ss_pred             hccccccCcceEEEEEe--CCCcEEEEEEecccc----chHHHHHHHHHHhc---cCCCcccceeEEEEc-----CCeEE
Q 006559          338 AELLGKGCVGATYKVVL--DGGDVVVVKRIRERK----KKREVDEWLRVIGG---LRHSNIVSIRAYCNG-----KDELF  403 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~--~~~~~vavK~l~~~~----~~~~~~~e~~~l~~---l~H~niv~l~~~~~~-----~~~~~  403 (640)
                      .+.||+|+||.||+|+.  .++..||||.++...    ....+.+|+.+++.   ++||||++++++|..     ....+
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~~~~~   85 (290)
T cd07862           6 VAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLT   85 (290)
T ss_pred             eeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCCCcEE
Confidence            46799999999999985  346789999886432    22345556665554   479999999999852     35689


Q ss_pred             EEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccc
Q 006559          404 LVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ  483 (640)
Q Consensus       404 lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~  483 (640)
                      +||||++ ++|.+++.....   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++
T Consensus        86 lv~e~~~-~~l~~~~~~~~~---~~~~~~~~~~i~~qi~~aL~~lH~---~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~  158 (290)
T cd07862          86 LVFEHVD-QDLTTYLDKVPE---PGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLAR  158 (290)
T ss_pred             EEEccCC-CCHHHHHHhCCC---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEEcCCCCEEEccccceE
Confidence            9999996 699999875432   247899999999999999999994   559999999999999999999999999987


Q ss_pred             ccCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHHHHH-Hhhcc---
Q 006559          484 LFHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVKWVQ-MMGQD---  553 (640)
Q Consensus       484 ~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~~~~-~~~~~---  553 (640)
                      ....     ...++..|+|||++.       ...++.++|||||||++|||++|+.||..... +....+. .....   
T Consensus       159 ~~~~~~~~~~~~~~~~y~aPE~~~-------~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~~~~~~~  231 (290)
T cd07862         159 IYSFQMALTSVVVTLWYRAPEVLL-------QSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEE  231 (290)
T ss_pred             eccCCcccccccccccccChHHHh-------CCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChh
Confidence            6542     234578899999653       34567899999999999999999999975321 1111111 11100   


Q ss_pred             ccccc------ccchhhccC--hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          554 ESAWE------VFDFELIMD--KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       554 ~~~~~------~~d~~~~~~--~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .....      .+.......  .........+.+++.+|++.||++|||+.|+++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  286 (290)
T cd07862         232 DWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  286 (290)
T ss_pred             hchhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence            00000      000000000  000112235667889999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.2e-35  Score=303.75  Aligned_cols=250  Identities=21%  Similarity=0.326  Sum_probs=185.8

Q ss_pred             hccccccCcceEEEEEeCC---------------CcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcC
Q 006559          338 AELLGKGCVGATYKVVLDG---------------GDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGK  399 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~---------------~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~  399 (640)
                      .+.||+|+||.||+++..+               ...||+|.++...   ....+.+|++++++++|+||+++++++...
T Consensus        10 ~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~   89 (295)
T cd05097          10 KEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGVCVSD   89 (295)
T ss_pred             hhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEcCC
Confidence            5679999999999987542               2248999987542   234688899999999999999999999999


Q ss_pred             CeEEEEEeccCCCCHHHhhccCCC-------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC
Q 006559          400 DELFLVYDYLPHGSLHSLLHGSRG-------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG  472 (640)
Q Consensus       400 ~~~~lV~Ey~~~gsL~~~l~~~~~-------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~  472 (640)
                      +..++||||+++++|.+++.....       .....++|..++.++.|++.||+|||+   .+++||||||+||++++++
T Consensus        90 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~---~~i~H~dlkp~Nill~~~~  166 (295)
T cd05097          90 DPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLAS---LNFVHRDLATRNCLVGNHY  166 (295)
T ss_pred             CccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHh---cCeeccccChhhEEEcCCC
Confidence            999999999999999999864321       011247889999999999999999994   4599999999999999999


Q ss_pred             CeEEccCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh--CCCCCCCCCc-
Q 006559          473 NACISDIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT--GKMAKGDGEL-  541 (640)
Q Consensus       473 ~~kl~DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t--g~~p~~~~~~-  541 (640)
                      .+||+|||+++.....        ...+..|+|||+.       ....++.++|||||||++|||++  |..||..... 
T Consensus       167 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~  239 (295)
T cd05097         167 TIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESI-------LLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDE  239 (295)
T ss_pred             cEEecccccccccccCcceeccCcCcCceeecChhhh-------ccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChH
Confidence            9999999998764321        1224579999964       33457789999999999999998  5667753211 


Q ss_pred             chHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 006559          542 GIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIED  604 (640)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~  604 (640)
                      ............... ...   ....+   .....+.+++.+||+.+|++||+|.+|++.|++
T Consensus       240 ~~~~~~~~~~~~~~~-~~~---~~~~~---~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~~  295 (295)
T cd05097         240 QVIENTGEFFRNQGR-QIY---LSQTP---LCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLRE  295 (295)
T ss_pred             HHHHHHHHhhhhccc-ccc---CCCCC---CCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhC
Confidence            111111110100000 000   00001   122467889999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.8e-35  Score=315.46  Aligned_cols=244  Identities=18%  Similarity=0.238  Sum_probs=182.4

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ..+.||+|+||.||++.. ..++.||+|...    ...+.+|++++++++|||||++++++......++|+||+. ++|.
T Consensus        96 ~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~----~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~~-~~L~  170 (391)
T PHA03212         96 ILETFTPGAEGFAFACIDNKTCEHVVIKAGQ----RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRYK-TDLY  170 (391)
T ss_pred             EEEEEcCCCCeEEEEEEECCCCCEEEEechh----hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecCC-CCHH
Confidence            356799999999999985 567889999754    2346789999999999999999999999999999999995 7898


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-------C
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-------P  488 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-------~  488 (640)
                      +++....     .+++..++.++.|++.||+|||+   .+||||||||+|||++.++.+||+|||+++....       .
T Consensus       171 ~~l~~~~-----~l~~~~~~~i~~qi~~aL~ylH~---~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~  242 (391)
T PHA03212        171 CYLAAKR-----NIAICDILAIERSVLRAIQYLHE---NRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYG  242 (391)
T ss_pred             HHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChHhEEEcCCCCEEEEeCCccccccccccccccc
Confidence            8886543     47899999999999999999995   4699999999999999999999999999875321       2


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc---------chHHHHHHhhcccccc--
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL---------GIVKWVQMMGQDESAW--  557 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~---------~~~~~~~~~~~~~~~~--  557 (640)
                      ..+|..|+|||++       ....++.++|||||||++|||+||+.|+.....         .+...++..+......  
T Consensus       243 ~~gt~~y~aPE~~-------~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~  315 (391)
T PHA03212        243 WAGTIATNAPELL-------ARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPI  315 (391)
T ss_pred             ccCccCCCChhhh-------cCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCc
Confidence            3568899999965       334577899999999999999999987643210         0111111111100000  


Q ss_pred             ---cccc-------------hhh-ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          558 ---EVFD-------------FEL-IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       558 ---~~~d-------------~~~-~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                         ...+             +.. ...........++.+++.+|++.||++|||+.|+++
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~  375 (391)
T PHA03212        316 DAQANLDEIYIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLD  375 (391)
T ss_pred             chhHHHHHHHHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhc
Confidence               0000             000 000111223446788899999999999999999974

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=3.4e-36  Score=313.96  Aligned_cols=229  Identities=20%  Similarity=0.294  Sum_probs=177.0

Q ss_pred             ccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHH-HHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWL-RVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~-~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ++||+|+||+||+|+.. +|+.||+|.+....     ..+++..|. .+++.++||||+++++++...+..|+||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            36999999999999964 68899999987541     122333343 356789999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....     .+++.....++.||+.||+|||+   .+|+||||||+|||++.++.+||+|||+++....    
T Consensus        81 g~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~---~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~  152 (323)
T cd05575          81 GELFFHLQRER-----SFPEPRARFYAAEIASALGYLHS---LNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKT  152 (323)
T ss_pred             CCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCCc
Confidence            99999987543     57888999999999999999994   4599999999999999999999999999875321    


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                        ...++..|+|||++       ....++.++|||||||++|||++|+.||.....  .+..+.....         ...
T Consensus       153 ~~~~~gt~~y~aPE~~-------~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~--~~~~~~i~~~---------~~~  214 (323)
T cd05575         153 TSTFCGTPEYLAPEVL-------RKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDT--AEMYDNILNK---------PLR  214 (323)
T ss_pred             cccccCChhhcChhhh-------cCCCCCccccccccchhhhhhhcCCCCCCCCCH--HHHHHHHHcC---------CCC
Confidence              23468899999964       334577899999999999999999999975322  1211111111         011


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMS  596 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~  596 (640)
                      ..+..   ...+.+++.+|++.||++||++.
T Consensus       215 ~~~~~---~~~~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         215 LKPNI---SVSARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             CCCCC---CHHHHHHHHHHhhcCHHhCCCCC
Confidence            11111   23456677789999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=2.4e-35  Score=297.53  Aligned_cols=241  Identities=23%  Similarity=0.412  Sum_probs=190.8

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ..++||+|+||.||+|...+++.||+|.+... ....++.+|+.++++++|+||+++++++. .+..++||||+++|+|.
T Consensus        10 ~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~L~   88 (260)
T cd05067          10 LVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVT-QEPIYIITEYMENGSLV   88 (260)
T ss_pred             eeeeeccCccceEEeeecCCCceEEEEEecCCCCcHHHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcEEEEEcCCCCCHH
Confidence            35689999999999999888999999998865 34567889999999999999999999874 56789999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-------
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-------  488 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-------  488 (640)
                      +++....+   ..+++..+..++.|++.||+|||+   .+++||||||+||++++++.++|+|||+++.....       
T Consensus        89 ~~~~~~~~---~~~~~~~~~~i~~~i~~al~~LH~---~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~  162 (260)
T cd05067          89 DFLKTPEG---IKLTINKLIDMAAQIAEGMAFIER---KNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREG  162 (260)
T ss_pred             HHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHhc---CCeecccccHHhEEEcCCCCEEEccCcceeecCCCCcccccC
Confidence            99875432   258899999999999999999994   56999999999999999999999999998765421       


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      ...+..|+|||+.       ....++.++|||||||++|||++ |+.||.....  ....+.......        ....
T Consensus       163 ~~~~~~y~~pe~~-------~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~~~~~--------~~~~  225 (260)
T cd05067         163 AKFPIKWTAPEAI-------NYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTN--PEVIQNLERGYR--------MPRP  225 (260)
T ss_pred             CcccccccCHHHh-------ccCCcCcccchHHHHHHHHHHHhCCCCCCCCCCh--HHHHHHHHcCCC--------CCCC
Confidence            1224579999964       34456789999999999999999 9999974321  122222211100        0001


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIED  604 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~  604 (640)
                      .   ....++.+++.+||+.+|++||+++++.+.|+.
T Consensus       226 ~---~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         226 D---NCPEELYELMRLCWKEKPEERPTFEYLRSVLED  259 (260)
T ss_pred             C---CCCHHHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence            1   122357778889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=1.7e-35  Score=306.35  Aligned_cols=249  Identities=21%  Similarity=0.367  Sum_probs=191.8

Q ss_pred             hhccccccCcceEEEEEeCC--------CcEEEEEEecccc---chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEE
Q 006559          337 SAELLGKGCVGATYKVVLDG--------GDVVVVKRIRERK---KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFL  404 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~--------~~~vavK~l~~~~---~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  404 (640)
                      ..+.||+|+||.||+++..+        +..+|+|.++...   ...++..|+.++.++ +||||+++++++...+..|+
T Consensus        22 i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~l  101 (307)
T cd05098          22 LGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYV  101 (307)
T ss_pred             EeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEE
Confidence            35689999999999997532        3469999987542   234577789999998 79999999999999999999


Q ss_pred             EEeccCCCCHHHhhccCCCC-----------CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC
Q 006559          405 VYDYLPHGSLHSLLHGSRGP-----------GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN  473 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~  473 (640)
                      ||||+++|+|.+++......           ....++|..+++++.|++.||+|||   +.+++||||||+||+++.++.
T Consensus       102 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~gi~H~dlkp~Nill~~~~~  178 (307)
T cd05098         102 IVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNV  178 (307)
T ss_pred             EEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH---HCCcccccccHHheEEcCCCc
Confidence            99999999999999764321           1125889999999999999999999   456999999999999999999


Q ss_pred             eEEccCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchH
Q 006559          474 ACISDIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIV  544 (640)
Q Consensus       474 ~kl~DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~  544 (640)
                      +||+|||+++.....        ...+..|+|||.+       ....++.++|||||||++|||++ |+.||....  ..
T Consensus       179 ~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~--~~  249 (307)
T cd05098         179 MKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEAL-------FDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP--VE  249 (307)
T ss_pred             EEECCCcccccccccchhhccccCCCccceeChHHh-------ccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCC--HH
Confidence            999999998754321        1123579999964       33456789999999999999998 888886432  22


Q ss_pred             HHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          545 KWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       545 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ...+...... .       ....   .....++.+++.+||+.+|++||+|.+|++.|+++...
T Consensus       250 ~~~~~~~~~~-~-------~~~~---~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~~~  302 (307)
T cd05098         250 ELFKLLKEGH-R-------MDKP---SNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILAL  302 (307)
T ss_pred             HHHHHHHcCC-C-------CCCC---CcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHHH
Confidence            2222221111 0       0001   12234566788899999999999999999999998765

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=1.8e-35  Score=305.63  Aligned_cols=249  Identities=23%  Similarity=0.367  Sum_probs=190.0

Q ss_pred             hhccccccCcceEEEEEeC-CCc--EEEEEEecccc---chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLD-GGD--VVVVKRIRERK---KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~--~vavK~l~~~~---~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ..+.||+|+||.||+|... ++.  .+++|.++...   ..+.+.+|+.++.++ +||||+++++++...+..|+||||+
T Consensus        11 ~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~   90 (303)
T cd05088          11 FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYA   90 (303)
T ss_pred             eeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEEEEeC
Confidence            3578999999999999864 343  46777776432   335677899999999 8999999999999999999999999


Q ss_pred             CCCCHHHhhccCCC-----------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEcc
Q 006559          410 PHGSLHSLLHGSRG-----------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISD  478 (640)
Q Consensus       410 ~~gsL~~~l~~~~~-----------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~D  478 (640)
                      ++|+|.++++....           .....+++..++.++.|++.||+|||   ..+|+||||||+|||+++++.+||+|
T Consensus        91 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~gi~H~dlkp~Nili~~~~~~kl~d  167 (303)
T cd05088          91 PHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIAD  167 (303)
T ss_pred             CCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHH---hCCccccccchheEEecCCCcEEeCc
Confidence            99999999975431           11125789999999999999999999   45699999999999999999999999


Q ss_pred             CCcccccCC---C--ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhc
Q 006559          479 IGVHQLFHT---P--FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQ  552 (640)
Q Consensus       479 fGl~~~~~~---~--~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~  552 (640)
                      ||+++....   .  ...+..|+|||+.       ....++.++|||||||++|||+| |..||.....  .+..+....
T Consensus       168 fg~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~~~~~~~  238 (303)
T cd05088         168 FGLSRGQEVYVKKTMGRLPVRWMAIESL-------NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC--AELYEKLPQ  238 (303)
T ss_pred             cccCcccchhhhcccCCCcccccCHHHH-------hccCCcccccchhhhhHHHHHHhcCCCCcccCCh--HHHHHHHhc
Confidence            999864321   1  1124569999954       33456789999999999999998 9999864321  111221111


Q ss_pred             ccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          553 DESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       553 ~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ..      ...  ...   .....+.+++.+||+.+|++||++.++++.|+++..+
T Consensus       239 ~~------~~~--~~~---~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~~  283 (303)
T cd05088         239 GY------RLE--KPL---NCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE  283 (303)
T ss_pred             CC------cCC--CCC---CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            10      000  000   1223467788899999999999999999999998654

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=1.2e-35  Score=309.94  Aligned_cols=228  Identities=20%  Similarity=0.303  Sum_probs=176.5

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHH---HhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRV---IGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~---l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      .+.||+|+||.||+|... +++.||||.++...     ..+.+..|+++   ++.++||||+++++++...+..|+||||
T Consensus         4 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv~E~   83 (324)
T cd05589           4 LAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFVMEY   83 (324)
T ss_pred             EEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEEEcC
Confidence            457999999999999864 58899999997541     12344555554   4577899999999999999999999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC--
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH--  486 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~--  486 (640)
                      +++|+|..+++..      .+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++...  
T Consensus        84 ~~~~~L~~~~~~~------~l~~~~~~~~~~qi~~al~~lH~---~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~  154 (324)
T cd05589          84 AAGGDLMMHIHTD------VFSEPRAVFYAACVVLGLQYLHE---NKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGF  154 (324)
T ss_pred             CCCCcHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHHh---CCeEecCCCHHHeEECCCCcEEeCcccCCccCCCC
Confidence            9999999888643      48899999999999999999994   569999999999999999999999999986532  


Q ss_pred             ----CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccch
Q 006559          487 ----TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       487 ----~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                          ....++..|+|||++       ....++.++|||||||++|||++|+.||......  ..........        
T Consensus       155 ~~~~~~~~g~~~y~aPE~~-------~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~--~~~~~i~~~~--------  217 (324)
T cd05589         155 GDRTSTFCGTPEFLAPEVL-------TETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEE--EVFDSIVNDE--------  217 (324)
T ss_pred             CCcccccccCccccCHhHh-------cCCCCCcccchhhHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhCC--------
Confidence                123468899999964       3445778999999999999999999999754321  1111111110        


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCH
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNM  595 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~  595 (640)
                       ...+...   ...+.+++.+||+.||++||++
T Consensus       218 -~~~p~~~---~~~~~~li~~~L~~dP~~R~~~  246 (324)
T cd05589         218 -VRYPRFL---SREAISIMRRLLRRNPERRLGS  246 (324)
T ss_pred             -CCCCCCC---CHHHHHHHHHHhhcCHhHcCCC
Confidence             0011111   2345678888999999999953

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=1.8e-35  Score=301.56  Aligned_cols=243  Identities=23%  Similarity=0.332  Sum_probs=187.3

Q ss_pred             hccccccCcceEEEEEeCC------CcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVLDG------GDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~------~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      .+.||+|+||.||+|...+      +..||+|.+....   ....+..|+.++++++|+||+++++++.+.+..++||||
T Consensus        11 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   90 (277)
T cd05036          11 LRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLPRFILLEL   90 (277)
T ss_pred             eeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCcEEEEec
Confidence            5679999999999999754      4578899876442   234578899999999999999999999999999999999


Q ss_pred             cCCCCHHHhhccCCCC--CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC---CeEEccCCccc
Q 006559          409 LPHGSLHSLLHGSRGP--GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG---NACISDIGVHQ  483 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~--~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~---~~kl~DfGl~~  483 (640)
                      +++|+|.+++...+..  ....++|..+++++.||+.||+|||+   .+++||||||+||+++.++   .+||+|||+++
T Consensus        91 ~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~  167 (277)
T cd05036          91 MAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEE---NHFIHRDIAARNCLLTCKGPGRVAKIADFGMAR  167 (277)
T ss_pred             CCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccchheEEEeccCCCcceEeccCcccc
Confidence            9999999998765321  12358999999999999999999995   4599999999999998654   69999999988


Q ss_pred             ccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhccc
Q 006559          484 LFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDE  554 (640)
Q Consensus       484 ~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~  554 (640)
                      .....        ...+..|+|||++       ....++.++|||||||++|||+| |+.||......  ...+......
T Consensus       168 ~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~--~~~~~~~~~~  238 (277)
T cd05036         168 DIYRASYYRKGGRAMLPIKWMPPEAF-------LDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQ--EVMEFVTGGG  238 (277)
T ss_pred             ccCCccceecCCCCCccHhhCCHHHH-------hcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHH--HHHHHHHcCC
Confidence            65321        1123569999964       34567889999999999999997 99998743211  1122211111


Q ss_pred             ccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 006559          555 SAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIE  603 (640)
Q Consensus       555 ~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~  603 (640)
                      ..        ..+.   .....+.+++.+||+.+|++||++.+|++.|+
T Consensus       239 ~~--------~~~~---~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~  276 (277)
T cd05036         239 RL--------DPPK---GCPGPVYRIMTDCWQHTPEDRPNFATILERIQ  276 (277)
T ss_pred             cC--------CCCC---CCCHHHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence            00        0011   12245777888999999999999999999886

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.6e-36  Score=310.32  Aligned_cols=239  Identities=20%  Similarity=0.288  Sum_probs=194.3

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCe-EEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDE-LFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~-~~lV~Ey~~  410 (640)
                      ..+++|+|+||.++.++.+ ++..+|+|++.-.    ..++...+|+.++++++|||||.+.+.|..++. .+|||+||+
T Consensus         8 ~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm~Y~e   87 (426)
T KOG0589|consen    8 VLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVMEYCE   87 (426)
T ss_pred             hhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEEeecC
Confidence            3578999999999998854 4667999988754    234466789999999999999999999999888 999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC--
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP--  488 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~--  488 (640)
                      +|++.+.+...++   ..++.+++.+++.|++.|+.|||   +.+|+|||||+.||++..++.+||.|||+++.+++.  
T Consensus        88 Gg~l~~~i~~~k~---~~f~E~~i~~~~~Q~~~av~ylH---~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~  161 (426)
T KOG0589|consen   88 GGDLAQLIKEQKG---VLFPEERILKWFVQILLAVNYLH---ENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDS  161 (426)
T ss_pred             CCCHHHHHHHHhh---ccccHHHHHHHHHHHHHHHHHHH---hhhhhcccchhhhhhccccCceeecchhhhhhcCCchh
Confidence            9999999987752   36899999999999999999999   556999999999999999999999999999998764  


Q ss_pred             ----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          489 ----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       489 ----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                          ..+|+.|+.||++       ....|..|+||||+||++|||++-+++|...+.....  ..         ++... 
T Consensus       162 ~a~tvvGTp~YmcPEil-------~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~~Li--~k---------i~~~~-  222 (426)
T KOG0589|consen  162 LASTVVGTPYYMCPEIL-------SDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNMSELI--LK---------INRGL-  222 (426)
T ss_pred             hhheecCCCcccCHHHh-------CCCCCCccCcchhhcchHHHHHhcccccCccchHHHH--HH---------Hhhcc-
Confidence                4679999999975       4566778999999999999999999999865433221  11         11111 


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                       ..+-......++..++..|+..+|+.||++.+++.+
T Consensus       223 -~~Plp~~ys~el~~lv~~~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  223 -YSPLPSMYSSELRSLVKSMLRKNPEHRPSALELLRR  258 (426)
T ss_pred             -CCCCCccccHHHHHHHHHHhhcCCccCCCHHHHhhC
Confidence             011112233456667778999999999999999864

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=8.7e-36  Score=309.74  Aligned_cols=232  Identities=22%  Similarity=0.296  Sum_probs=178.5

Q ss_pred             ccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhc-cCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGG-LRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~-l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ++||+|+||.||+|+.. +|..||+|.++...     ..+....|.+++.. .+||||+++++++...+..|+||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            36999999999999965 57889999987541     22344556666654 5899999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC-----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----  486 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~-----  486 (640)
                      |+|.+++....     .+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++...     
T Consensus        81 g~L~~~i~~~~-----~~~~~~~~~~~~qi~~~l~~lH~---~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  152 (316)
T cd05620          81 GDLMFHIQDKG-----RFDLYRATFYAAEIVCGLQFLHS---KGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNR  152 (316)
T ss_pred             CcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEECCCCCEEeCccCCCeecccCCCc
Confidence            99999987543     47888999999999999999994   569999999999999999999999999987431     


Q ss_pred             -CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          487 -TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       487 -~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                       ....++..|+|||++       ....++.++|||||||++|||++|+.||.....  .+..+......       +.  
T Consensus       153 ~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~--~~~~~~~~~~~-------~~--  214 (316)
T cd05620         153 ASTFCGTPDYIAPEIL-------QGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDE--DELFESIRVDT-------PH--  214 (316)
T ss_pred             eeccCCCcCccCHHHH-------cCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH--HHHHHHHHhCC-------CC--
Confidence             123468899999965       344577899999999999999999999975432  11111111100       00  


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHH-HHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMS-IVH  599 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~-~v~  599 (640)
                      .+...   ..++.+++.+|++.||++||++. ++.
T Consensus       215 ~~~~~---~~~~~~li~~~l~~dP~~R~~~~~~~~  246 (316)
T cd05620         215 YPRWI---TKESKDILEKLFERDPTRRLGVVGNIR  246 (316)
T ss_pred             CCCCC---CHHHHHHHHHHccCCHHHcCCChHHHH
Confidence            01111   22455677789999999999984 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=1.8e-35  Score=302.00  Aligned_cols=244  Identities=23%  Similarity=0.348  Sum_probs=187.8

Q ss_pred             hhccccccCcceEEEEEeC------CCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          337 SAELLGKGCVGATYKVVLD------GGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~------~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      ..++||+|+||.||++...      .+..+|+|.+...  .....+.+|++++++++|+||+++++++...+..++||||
T Consensus         9 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   88 (280)
T cd05092           9 LKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLMVFEY   88 (280)
T ss_pred             eccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEEEEec
Confidence            3568999999999999742      3557899988754  2345688899999999999999999999999999999999


Q ss_pred             cCCCCHHHhhccCCC----------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEcc
Q 006559          409 LPHGSLHSLLHGSRG----------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISD  478 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~----------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~D  478 (640)
                      +++|+|.+++.....          .....+++..++.++.|++.||+|||   ..+++||||||+|||+++++.+||+|
T Consensus        89 ~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~nil~~~~~~~kL~d  165 (280)
T cd05092          89 MRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLA---SLHFVHRDLATRNCLVGQGLVVKIGD  165 (280)
T ss_pred             CCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHH---HCCeecccccHhhEEEcCCCCEEECC
Confidence            999999999875431          01124789999999999999999999   45699999999999999999999999


Q ss_pred             CCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHH
Q 006559          479 IGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQM  549 (640)
Q Consensus       479 fGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~  549 (640)
                      ||+++.....        ...+..|+|||..       ....++.++|||||||++|||+| |+.||.....  ......
T Consensus       166 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~--~~~~~~  236 (280)
T cd05092         166 FGMSRDIYSTDYYRVGGRTMLPIRWMPPESI-------LYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSN--TEAIEC  236 (280)
T ss_pred             CCceeEcCCCceeecCCCccccccccCHHHh-------ccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCH--HHHHHH
Confidence            9998754321        1224579999954       34557789999999999999999 8999864221  111111


Q ss_pred             hhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 006559          550 MGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIE  603 (640)
Q Consensus       550 ~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~  603 (640)
                      .......        ....   .....+.+++.+||+.||++||++.+|.+.|+
T Consensus       237 ~~~~~~~--------~~~~---~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~  279 (280)
T cd05092         237 ITQGREL--------ERPR---TCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQ  279 (280)
T ss_pred             HHcCccC--------CCCC---CCCHHHHHHHHHHccCChhhCCCHHHHHHHHh
Confidence            1111000        0001   12234667888899999999999999999886

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=3.8e-35  Score=302.15  Aligned_cols=249  Identities=22%  Similarity=0.342  Sum_probs=187.3

Q ss_pred             hhccccccCcceEEEEEeC-----------------CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEE
Q 006559          337 SAELLGKGCVGATYKVVLD-----------------GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYC  396 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-----------------~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~  396 (640)
                      ..+.||+|+||.||++...                 ++..||+|.+....   ...++.+|++++++++|+||+++++++
T Consensus         9 ~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~   88 (296)
T cd05095           9 FKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRLLAVC   88 (296)
T ss_pred             eeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEE
Confidence            3567999999999998532                 23468999987542   245688999999999999999999999


Q ss_pred             EcCCeEEEEEeccCCCCHHHhhccCCCC------CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC
Q 006559          397 NGKDELFLVYDYLPHGSLHSLLHGSRGP------GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ  470 (640)
Q Consensus       397 ~~~~~~~lV~Ey~~~gsL~~~l~~~~~~------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~  470 (640)
                      ...+..++||||+++|+|.+++......      ....+++.....++.|++.||+|||+   .+++||||||+|||++.
T Consensus        89 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~---~~i~H~dlkp~Nili~~  165 (296)
T cd05095          89 ITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSS---LNFVHRDLATRNCLVGK  165 (296)
T ss_pred             ecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHH---CCeecccCChheEEEcC
Confidence            9999999999999999999998754311      11247888999999999999999995   45999999999999999


Q ss_pred             CCCeEEccCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh--CCCCCCCCC
Q 006559          471 LGNACISDIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT--GKMAKGDGE  540 (640)
Q Consensus       471 ~~~~kl~DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t--g~~p~~~~~  540 (640)
                      ++.+||+|||+++.+...        ...+..|++||+.       ....++.++|||||||++|||+|  |..||....
T Consensus       166 ~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~-------~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~  238 (296)
T cd05095         166 NYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESI-------LLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLS  238 (296)
T ss_pred             CCCEEeccCcccccccCCcceeccCcCcCccccCCHHHH-------hcCCccchhhhhHHHHHHHHHHHhCCCCCccccC
Confidence            999999999998765321        1224578999954       33457789999999999999998  678886321


Q ss_pred             cchHHHHHHhhc---ccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 006559          541 LGIVKWVQMMGQ---DESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIED  604 (640)
Q Consensus       541 ~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~  604 (640)
                        ..+++.....   .... ....+   ..   ..+...+.+++.+||+.||++||+|.+|++.|++
T Consensus       239 --~~~~~~~~~~~~~~~~~-~~~~~---~~---~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  296 (296)
T cd05095         239 --DEQVIENTGEFFRDQGR-QVYLP---KP---ALCPDSLYKLMLSCWRRNAKERPSFQEIHATLLE  296 (296)
T ss_pred             --hHHHHHHHHHHHhhccc-cccCC---CC---CCCCHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence              1121111110   0000 00000   00   1123467788899999999999999999998863

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=7.5e-36  Score=301.02  Aligned_cols=236  Identities=22%  Similarity=0.314  Sum_probs=180.4

Q ss_pred             ccccccCcceEEEEEeCC--------CcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          339 ELLGKGCVGATYKVVLDG--------GDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~--------~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      +.||+|+||.||+|....        ...|++|.+...  ...+.+.+|+.+++.++||||+++++++...+..++||||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   80 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEY   80 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEec
Confidence            469999999999998532        224788877644  2235678889999999999999999999998999999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC--------eEEccCC
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN--------ACISDIG  480 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~--------~kl~DfG  480 (640)
                      +++|+|.++++....    .+++..++.++.|++.||+|||   ..+|+||||||+||+++.++.        ++++|||
T Consensus        81 ~~~g~L~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~lH---~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g  153 (258)
T cd05078          81 VKFGSLDTYLKKNKN----LINISWKLEVAKQLAWALHFLE---DKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPG  153 (258)
T ss_pred             CCCCcHHHHHhcCCC----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEEEecccccccCCCceEEecccc
Confidence            999999999976432    4789999999999999999999   456999999999999987765        5999999


Q ss_pred             cccccCC--CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCC-CCCCCCCcchHHHHHHhhcccccc
Q 006559          481 VHQLFHT--PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELGIVKWVQMMGQDESAW  557 (640)
Q Consensus       481 l~~~~~~--~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~-~p~~~~~~~~~~~~~~~~~~~~~~  557 (640)
                      ++.....  ....+..|+|||++.      ....++.++|||||||++|||++|. .|+...+.  ...........   
T Consensus       154 ~~~~~~~~~~~~~~~~y~aPE~~~------~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~--~~~~~~~~~~~---  222 (258)
T cd05078         154 ISITVLPKEILLERIPWVPPECIE------NPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDS--QKKLQFYEDRH---  222 (258)
T ss_pred             cccccCCchhccccCCccCchhcc------CCCCCCchhhHHHHHHHHHHHHcCCCCChhhccH--HHHHHHHHccc---
Confidence            9876543  234577899999652      2234678899999999999999985 55543221  11111111100   


Q ss_pred             cccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 006559          558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMI  602 (640)
Q Consensus       558 ~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L  602 (640)
                           .  .+.   ....++.+++.+||+.+|++|||++++++.|
T Consensus       223 -----~--~~~---~~~~~~~~li~~~l~~~p~~Rps~~~il~~l  257 (258)
T cd05078         223 -----Q--LPA---PKWTELANLINQCMDYEPDFRPSFRAIIRDL  257 (258)
T ss_pred             -----c--CCC---CCcHHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence                 0  011   1123467788889999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=5.4e-36  Score=312.68  Aligned_cols=232  Identities=19%  Similarity=0.266  Sum_probs=176.7

Q ss_pred             ccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHH-HHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEW-LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e-~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      +.||+|+||.||+|+.. ++..||+|.+....     ....+..| ..+++.++||||+++++++...+..|+||||+++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            36999999999999965 56789999987542     12233333 3456789999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC-----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----  486 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~-----  486 (640)
                      |+|.+++....     .+.......++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++...     
T Consensus        81 ~~L~~~~~~~~-----~~~~~~~~~~~~qi~~~L~~lH~---~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~~  152 (325)
T cd05602          81 GELFYHLQRER-----CFLEPRARFYAAEIASALGYLHS---LNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGT  152 (325)
T ss_pred             CcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEECCCCCEEEccCCCCcccccCCCC
Confidence            99999997543     46777888899999999999995   559999999999999999999999999987532     


Q ss_pred             -CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          487 -TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       487 -~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                       ....++..|+|||++       ....++.++|||||||++|||++|+.||.....  .+..+.....         ...
T Consensus       153 ~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~--~~~~~~i~~~---------~~~  214 (325)
T cd05602         153 TSTFCGTPEYLAPEVL-------HKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT--AEMYDNILNK---------PLQ  214 (325)
T ss_pred             cccccCCccccCHHHH-------cCCCCCCccccccccHHHHHHhcCCCCCCCCCH--HHHHHHHHhC---------CcC
Confidence             123468899999965       334577899999999999999999999975322  1111111111         011


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVH  599 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~  599 (640)
                      ..+...   ..+.+++..|++.+|++||++.+.+
T Consensus       215 ~~~~~~---~~~~~li~~~l~~~p~~R~~~~~~~  245 (325)
T cd05602         215 LKPNIT---NSARHLLEGLLQKDRTKRLGAKDDF  245 (325)
T ss_pred             CCCCCC---HHHHHHHHHHcccCHHHCCCCCCCH
Confidence            111122   2355667779999999999977443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.6e-35  Score=295.56  Aligned_cols=242  Identities=24%  Similarity=0.338  Sum_probs=191.9

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccccc-hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERKK-KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~-~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ..+.||+|+||.||+|... ++.||+|.+..... .+.+..|+.++++++|+||+++++++...+..++||||+++++|.
T Consensus        10 ~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~   88 (256)
T cd05039          10 LGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLV   88 (256)
T ss_pred             ceeeeecCCCceEEEEEec-CcEEEEEEeccchhHHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEecCCCcHH
Confidence            3578999999999999875 68899999987643 567888999999999999999999999889999999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---cccc
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---FFIN  492 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---~~~~  492 (640)
                      +++.....   ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||.++.....   ...+
T Consensus        89 ~~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lh~---~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~~~~~~  162 (256)
T cd05039          89 DYLRSRGR---AVITLAQQLGFALDVCEGMEYLEE---KNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGKLP  162 (256)
T ss_pred             HHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHHh---CCccchhcccceEEEeCCCCEEEcccccccccccccccCCCc
Confidence            99975431   258899999999999999999994   55999999999999999999999999998876432   1224


Q ss_pred             ccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHH
Q 006559          493 DAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEME  571 (640)
Q Consensus       493 ~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  571 (640)
                      ..|+|||..       ....++.++||||||+++||+++ |+.||.......  ......... ..     .  ..   .
T Consensus       163 ~~~~ape~~-------~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~--~~~~~~~~~-~~-----~--~~---~  222 (256)
T cd05039         163 VKWTAPEAL-------REKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD--VVPHVEKGY-RM-----E--AP---E  222 (256)
T ss_pred             ccccCchhh-------cCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHHH--HHHHHhcCC-CC-----C--Cc---c
Confidence            579999954       34456789999999999999998 999986432111  111111100 00     0  01   1


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          572 EEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       572 ~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                      .....+.+++.+||..+|++||++.+++++|+.+
T Consensus       223 ~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~~  256 (256)
T cd05039         223 GCPPEVYKVMKDCWELDPAKRPTFKQLREQLALI  256 (256)
T ss_pred             CCCHHHHHHHHHHhccChhhCcCHHHHHHHHhcC
Confidence            1234577788889999999999999999999764

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.8e-36  Score=315.30  Aligned_cols=237  Identities=21%  Similarity=0.318  Sum_probs=185.6

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+.. +++.||||+++..     .....+.+|++++..++||||+++++++.+.+..|+||||+++
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   85 (350)
T cd05573           6 IKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVMEYMPG   85 (350)
T ss_pred             EEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEEcCCCC
Confidence            467999999999999965 6889999998754     2234577899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---  488 (640)
                      |+|.+++....     .+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++.....   
T Consensus        86 ~~L~~~l~~~~-----~l~~~~~~~i~~qi~~aL~~LH~---~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~  157 (350)
T cd05573          86 GDLMNLLIRKD-----VFPEETARFYIAELVLALDSVHK---LGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDR  157 (350)
T ss_pred             CCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEeecCCCCccCcccCcc
Confidence            99999997652     57888999999999999999994   56999999999999999999999999998765322   


Q ss_pred             --------------------------------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCC
Q 006559          489 --------------------------------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAK  536 (640)
Q Consensus       489 --------------------------------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~  536 (640)
                                                      ..++..|+|||++       ....++.++|||||||++|||++|+.||
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwSlG~il~ell~g~~Pf  230 (350)
T cd05573         158 EYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVL-------RGTPYGLECDWWSLGVILYEMLYGFPPF  230 (350)
T ss_pred             cccccccccccccccccccccccccccccccccccCccccCHHHH-------cCCCCCCceeeEecchhhhhhccCCCCC
Confidence                                            2357889999975       3346778999999999999999999999


Q ss_pred             CCCCcchHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCC-HHHHHH
Q 006559          537 GDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPN-MSIVHR  600 (640)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs-~~~v~~  600 (640)
                      ...... ..+.+........      .......   ...++.+++..|+. +|++||+ +.++++
T Consensus       231 ~~~~~~-~~~~~i~~~~~~~------~~p~~~~---~~~~~~~li~~ll~-dp~~R~~s~~~ll~  284 (350)
T cd05573         231 YSDTLQ-ETYNKIINWKESL------RFPPDPP---VSPEAIDLICRLLC-DPEDRLGSFEEIKS  284 (350)
T ss_pred             CCCCHH-HHHHHHhccCCcc------cCCCCCC---CCHHHHHHHHHHcc-ChhhcCCCHHHHhc
Confidence            754321 1111111100000      0000011   12345566777997 9999999 999976

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=2.1e-35  Score=299.17  Aligned_cols=243  Identities=20%  Similarity=0.321  Sum_probs=186.2

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      .+.||+|+||.||+|+. .++..||+|.+...  .....+.+|+.++++++||||+++++++...+..++||||+++|+|
T Consensus        14 ~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~~~~~~L   93 (267)
T cd06646          14 IQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYCGGGSL   93 (267)
T ss_pred             hheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeCCCCCcH
Confidence            56799999999999995 56788999998754  2334577899999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------C
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------P  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------~  488 (640)
                      .++++...     ++++..+..++.|++.||+|||+   .+|+||||||+||++++++.+||+|||+++....      .
T Consensus        94 ~~~~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~  165 (267)
T cd06646          94 QDIYHVTG-----PLSELQIAYVCRETLQGLAYLHS---KGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAKRKS  165 (267)
T ss_pred             HHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEECCCCCEEECcCccceeecccccccCc
Confidence            99987542     57889999999999999999994   5699999999999999999999999999876532      1


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..++..|+|||.+...    ....++.++|||||||++|||++|+.|+....... . .......    ....+...   
T Consensus       166 ~~~~~~y~~PE~~~~~----~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~-~-~~~~~~~----~~~~~~~~---  232 (267)
T cd06646         166 FIGTPYWMAPEVAAVE----KNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMR-A-LFLMSKS----NFQPPKLK---  232 (267)
T ss_pred             cccCccccCHhHcccc----cCCCCcchhhHHHHHHHHHHHHhCCCCccccchhh-h-heeeecC----CCCCCCCc---
Confidence            2346789999965321    23346779999999999999999999985321100 0 0000000    00000010   


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                      ........+.+++.+||..+|++||+++++++.
T Consensus       233 ~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  265 (267)
T cd06646         233 DKTKWSSTFHNFVKISLTKNPKKRPTAERLLTH  265 (267)
T ss_pred             cccccCHHHHHHHHHHhhCChhhCcCHHHHhcC
Confidence            011223456778888999999999999998764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=5.3e-35  Score=294.02  Aligned_cols=237  Identities=27%  Similarity=0.379  Sum_probs=187.9

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|+.. ++..|++|.+...    ...+++..|++++++++||||+++++++...+..++||||++++
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (256)
T cd08529           5 LNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEYAENG   84 (256)
T ss_pred             eEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEeCCCC
Confidence            467999999999999864 6788999988643    23456778899999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.++++....   ..+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||+++.....    
T Consensus        85 ~L~~~l~~~~~---~~~~~~~~~~i~~~l~~al~~lH---~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~~  158 (256)
T cd08529          85 DLHKLLKMQRG---RPLPEDQVWRFFIQILLGLAHLH---SKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFA  158 (256)
T ss_pred             cHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEeCCCCEEEcccccceeccCccchh
Confidence            99999976421   25889999999999999999999   456999999999999999999999999998765432    


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                        ..++..|+|||+.       ....++.++|||||||++|||+||+.||.....  ....+...... ..     ..  
T Consensus       159 ~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~~~-~~-----~~--  221 (256)
T cd08529         159 NTIVGTPYYLSPELC-------EDKPYNEKSDVWALGVVLYECCTGKHPFDANNQ--GALILKIIRGV-FP-----PV--  221 (256)
T ss_pred             hccccCccccCHHHh-------cCCCCCCccchHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHcCC-CC-----CC--
Confidence              2346789999964       334567899999999999999999999975431  11111111110 00     00  


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                         .......+.+++.+||+.+|++||+|.++++
T Consensus       222 ---~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~  252 (256)
T cd08529         222 ---SQMYSQQLAQLIDQCLTKDYRQRPDTFQLLR  252 (256)
T ss_pred             ---ccccCHHHHHHHHHHccCCcccCcCHHHHhh
Confidence               0122345778888999999999999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=1.5e-35  Score=302.88  Aligned_cols=254  Identities=24%  Similarity=0.389  Sum_probs=191.2

Q ss_pred             hccccccCcceEEEEEeC-----CCcEEEEEEeccccc---hHHHHHHHHHHhccCCCcccceeEEEEc--CCeEEEEEe
Q 006559          338 AELLGKGCVGATYKVVLD-----GGDVVVVKRIRERKK---KREVDEWLRVIGGLRHSNIVSIRAYCNG--KDELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-----~~~~vavK~l~~~~~---~~~~~~e~~~l~~l~H~niv~l~~~~~~--~~~~~lV~E  407 (640)
                      .+.||+|+||.||++++.     .+..+|||.+.....   .+++..|++++++++|+||+++++++..  ....++|||
T Consensus         9 ~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   88 (284)
T cd05038           9 IKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLRLIME   88 (284)
T ss_pred             heeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceEEEEe
Confidence            467999999999999864     367899999986533   5678899999999999999999999887  557999999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      |+++|+|.+++.....    .+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||+|||++.....
T Consensus        89 ~~~~~~l~~~l~~~~~----~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  161 (284)
T cd05038          89 YLPSGSLRDYLQRHRD----QINLKRLLLFSSQICKGMDYLGS---QRYIHRDLAARNILVESEDLVKISDFGLAKVLPE  161 (284)
T ss_pred             cCCCCCHHHHHHhCcc----ccCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHhEEEcCCCCEEEccccccccccc
Confidence            9999999999976431    48899999999999999999994   5699999999999999999999999999887642


Q ss_pred             C---------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccc--
Q 006559          488 P---------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESA--  556 (640)
Q Consensus       488 ~---------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~--  556 (640)
                      .         ...+..|++||..       ....++.++||||||+++|||+||+.|+.........++.........  
T Consensus       162 ~~~~~~~~~~~~~~~~~~~Pe~~-------~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  234 (284)
T cd05038         162 DKDYYYVKEPGESPIFWYAPECL-------RTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTR  234 (284)
T ss_pred             CCcceeccCCCCCcccccCcHHH-------ccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHH
Confidence            1         1123458999954       334567889999999999999999999764322111100000000000  


Q ss_pred             -ccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          557 -WEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       557 -~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                       .+........ +....+..++.+++.+||+.+|++||+|.||+++|++++
T Consensus       235 ~~~~~~~~~~~-~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i~  284 (284)
T cd05038         235 LLELLKEGERL-PRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRLR  284 (284)
T ss_pred             HHHHHHcCCcC-CCCccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhcC
Confidence             0000000000 001122346788999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=2.8e-35  Score=298.34  Aligned_cols=240  Identities=21%  Similarity=0.352  Sum_probs=188.2

Q ss_pred             hccccccCcceEEEEEeC-C---CcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLD-G---GDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~---~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      .+.||+|+||.||+|... +   +..+|+|.++...   ..+.+..|+.++++++||||+++++++...+..++||||++
T Consensus         9 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   88 (267)
T cd05066           9 EKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYME   88 (267)
T ss_pred             eeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcCC
Confidence            568999999999999853 2   3368999887542   23567889999999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc-
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF-  489 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~-  489 (640)
                      +|+|.+++....    ..+++..+..++.|++.||+|||   +.+++||||||+|||++.++.+|++|||+++...... 
T Consensus        89 ~~~L~~~~~~~~----~~~~~~~~~~i~~~i~~~l~~lH---~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~  161 (267)
T cd05066          89 NGSLDAFLRKHD----GQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPE  161 (267)
T ss_pred             CCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---HCCEeehhhchhcEEECCCCeEEeCCCCcccccccccc
Confidence            999999997543    24789999999999999999999   4569999999999999999999999999987654321 


Q ss_pred             --------cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCc-chHHHHHHhhcccccccc
Q 006559          490 --------FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGEL-GIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       490 --------~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~-~~~~~~~~~~~~~~~~~~  559 (640)
                              ..+..|+|||.+       ....++.++|||||||++||+++ |+.||.+... .....+   .....    
T Consensus       162 ~~~~~~~~~~~~~y~~pe~~-------~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~~~~~~---~~~~~----  227 (267)
T cd05066         162 AAYTTRGGKIPIRWTAPEAI-------AYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQDVIKAI---EEGYR----  227 (267)
T ss_pred             eeeecCCCccceeecCHhHh-------ccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHHHHHHHH---hCCCc----
Confidence                    113469999954       44567889999999999999887 9999864321 111111   11100    


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                          ....   ......+.+++.+|++.+|++||+|.++++.|+++
T Consensus       228 ----~~~~---~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         228 ----LPAP---MDCPAALHQLMLDCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             ----CCCC---CCCCHHHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence                0000   11233567788899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=2.8e-35  Score=309.59  Aligned_cols=249  Identities=21%  Similarity=0.339  Sum_probs=188.0

Q ss_pred             hhccccccCcceEEEEEe------CCCcEEEEEEeccccc---hHHHHHHHHHHhcc-CCCcccceeEEEEcC-CeEEEE
Q 006559          337 SAELLGKGCVGATYKVVL------DGGDVVVVKRIRERKK---KREVDEWLRVIGGL-RHSNIVSIRAYCNGK-DELFLV  405 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~------~~~~~vavK~l~~~~~---~~~~~~e~~~l~~l-~H~niv~l~~~~~~~-~~~~lV  405 (640)
                      ..+.||+|+||.||+|+.      .+++.||||.++....   ...+..|+.++.++ +||||++++++|... ...++|
T Consensus        11 ~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv   90 (343)
T cd05103          11 LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVI   90 (343)
T ss_pred             ccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCceEEE
Confidence            467899999999999973      3467899999976432   34577899999999 689999999988654 468999


Q ss_pred             EeccCCCCHHHhhccCCCC-------------------------------------------------------------
Q 006559          406 YDYLPHGSLHSLLHGSRGP-------------------------------------------------------------  424 (640)
Q Consensus       406 ~Ey~~~gsL~~~l~~~~~~-------------------------------------------------------------  424 (640)
                      |||+++|+|.++++.....                                                             
T Consensus        91 ~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (343)
T cd05103          91 VEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAEQED  170 (343)
T ss_pred             EeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhhhhhh
Confidence            9999999999998643210                                                             


Q ss_pred             -CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC--------ccccccc
Q 006559          425 -GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP--------FFINDAY  495 (640)
Q Consensus       425 -~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~--------~~~~~~y  495 (640)
                       ....++|..+.+++.|+++||+|||   ..+|+||||||+|||++.++.+||+|||+++.....        ...+..|
T Consensus       171 ~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y  247 (343)
T cd05103         171 LYKKVLTLEDLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKW  247 (343)
T ss_pred             hhhccCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcce
Confidence             0124688899999999999999999   456999999999999999999999999998764221        1224569


Q ss_pred             cCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHHHH
Q 006559          496 NAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEM  574 (640)
Q Consensus       496 ~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  574 (640)
                      +|||++       ....++.++|||||||++|||++ |..||....... ........... ..       .+..   ..
T Consensus       248 ~aPE~~-------~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~-~~~~~~~~~~~-~~-------~~~~---~~  308 (343)
T cd05103         248 MAPETI-------FDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-EFCRRLKEGTR-MR-------APDY---TT  308 (343)
T ss_pred             ECcHHh-------cCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccH-HHHHHHhccCC-CC-------CCCC---CC
Confidence            999964       33457789999999999999997 899986432211 11111111100 00       0000   11


Q ss_pred             HHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          575 RALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       575 ~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                      .++.+++..||+.+|++||++.|+++.|+.+..
T Consensus       309 ~~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~~  341 (343)
T cd05103         309 PEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  341 (343)
T ss_pred             HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            347788899999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=1.3e-35  Score=325.53  Aligned_cols=240  Identities=20%  Similarity=0.284  Sum_probs=185.2

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCC--------eEE
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKD--------ELF  403 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~--------~~~  403 (640)
                      ..++||+|+||+||+|+. .+++.||||.+....    ....+.+|+..+..++|+||+++.+.+...+        ..+
T Consensus        36 i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~~~~~i~  115 (496)
T PTZ00283         36 ISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPENVLMIA  115 (496)
T ss_pred             EEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcccceEEE
Confidence            357899999999999984 568999999986542    2345677899999999999999887765432        378


Q ss_pred             EEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccc
Q 006559          404 LVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ  483 (640)
Q Consensus       404 lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~  483 (640)
                      +||||+++|+|.++++.... ...++++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++
T Consensus       116 lV~Ey~~~gsL~~~l~~~~~-~~~~l~e~~~~~i~~qll~aL~~lH~---~~IiHrDLKP~NILl~~~~~vkL~DFGls~  191 (496)
T PTZ00283        116 LVLDYANAGDLRQEIKSRAK-TNRTFREHEAGLLFIQVLLAVHHVHS---KHMIHRDIKSANILLCSNGLVKLGDFGFSK  191 (496)
T ss_pred             EEEeCCCCCcHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEeCCCCEEEEecccCe
Confidence            99999999999999875432 22368889999999999999999994   569999999999999999999999999987


Q ss_pred             ccCC--------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccc
Q 006559          484 LFHT--------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDES  555 (640)
Q Consensus       484 ~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~  555 (640)
                      .+..        ...+|..|+|||++       ....++.++|||||||++|||+||+.||.....  ...++...... 
T Consensus       192 ~~~~~~~~~~~~~~~Gt~~Y~aPE~~-------~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~--~~~~~~~~~~~-  261 (496)
T PTZ00283        192 MYAATVSDDVGRTFCGTPYYVAPEIW-------RRKPYSKKADMFSLGVLLYELLTLKRPFDGENM--EEVMHKTLAGR-  261 (496)
T ss_pred             eccccccccccccccCCcceeCHHHh-------CCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHhcCC-
Confidence            6532        23468899999965       334577899999999999999999999975432  22222211110 


Q ss_pred             cccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          556 AWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       556 ~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                          .++   .+.   ....++.+++..||+.+|++||++.++++
T Consensus       262 ----~~~---~~~---~~~~~l~~li~~~L~~dP~~RPs~~ell~  296 (496)
T PTZ00283        262 ----YDP---LPP---SISPEMQEIVTALLSSDPKRRPSSSKLLN  296 (496)
T ss_pred             ----CCC---CCC---CCCHHHHHHHHHHcccChhhCcCHHHHHh
Confidence                000   111   12234667788899999999999999875

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=1.1e-35  Score=309.45  Aligned_cols=233  Identities=23%  Similarity=0.313  Sum_probs=181.4

Q ss_pred             ccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      +.||+|+||.||+|+.. ++..||||.++...     ....+..|.+++..+ +||||+++++++...+..|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36999999999999865 47789999987541     223455677777766 799999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC-----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----  486 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~-----  486 (640)
                      |+|..++....     .+++.....++.|++.||.|||+   .+|+||||||+|||+++++.+||+|||+++...     
T Consensus        81 ~~L~~~~~~~~-----~l~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~  152 (318)
T cd05570          81 GDLMFHIQRSG-----RFDEPRARFYAAEIVLGLQFLHE---RGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVT  152 (318)
T ss_pred             CCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeEccCCCHHHeEECCCCcEEecccCCCeecCcCCCc
Confidence            99999887543     58899999999999999999994   569999999999999999999999999986531     


Q ss_pred             -CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          487 -TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       487 -~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                       ....++..|+|||++       ....++.++|||||||++|||+||+.||.....  ...........         ..
T Consensus       153 ~~~~~g~~~y~aPE~~-------~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~--~~~~~~i~~~~---------~~  214 (318)
T cd05570         153 TSTFCGTPDYIAPEIL-------SYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDE--DELFQSILEDE---------VR  214 (318)
T ss_pred             ccceecCccccCHHHh-------cCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCH--HHHHHHHHcCC---------CC
Confidence             123457889999965       334577899999999999999999999975432  11111111110         00


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCH-----HHHHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNM-----SIVHR  600 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~-----~~v~~  600 (640)
                      .+...   ...+.+++.+||+.||++||++     .+++.
T Consensus       215 ~~~~~---~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~  251 (318)
T cd05570         215 YPRWL---SKEAKSILKSFLTKNPEKRLGCLPTGEQDIKG  251 (318)
T ss_pred             CCCcC---CHHHHHHHHHHccCCHHHcCCCCCCCHHHHhc
Confidence            11111   2346677888999999999998     66653

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=1.5e-35  Score=310.33  Aligned_cols=237  Identities=19%  Similarity=0.243  Sum_probs=181.0

Q ss_pred             hccccccCcceEEEEEe----CCCcEEEEEEecccc------chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEE
Q 006559          338 AELLGKGCVGATYKVVL----DGGDVVVVKRIRERK------KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~----~~~~~vavK~l~~~~------~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~  406 (640)
                      .+.||+|+||.||+++.    .++..||+|.+....      ..+.+..|++++..+ +|+||+++++++...+..++||
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~   84 (332)
T cd05614           5 LKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKLHLIL   84 (332)
T ss_pred             EEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEEEEEE
Confidence            46799999999999885    357889999986431      224466788899998 4899999999999999999999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||+++|+|.+++....     .+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++.+.
T Consensus        85 e~~~~g~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~---~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~  156 (332)
T cd05614          85 DYVSGGEMFTHLYQRD-----NFSEDEVRFYSGEIILALEHLHK---LGIVYRDIKLENILLDSEGHVVLTDFGLSKEFL  156 (332)
T ss_pred             eCCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCcEecCCCHHHeEECCCCCEEEeeCcCCcccc
Confidence            9999999999987543     47889999999999999999994   559999999999999999999999999987642


Q ss_pred             C-------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-c-hHHHHHHhhcccccc
Q 006559          487 T-------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-G-IVKWVQMMGQDESAW  557 (640)
Q Consensus       487 ~-------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~-~~~~~~~~~~~~~~~  557 (640)
                      .       ...++..|+|||++.+      ...++.++|||||||++|||+||+.||..... . .....+.....    
T Consensus       157 ~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~----  226 (332)
T cd05614         157 SEEKERTYSFCGTIEYMAPEIIRG------KGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKC----  226 (332)
T ss_pred             ccCCCccccccCCccccCHHHhcC------CCCCCCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHHHHhcC----
Confidence            2       2346889999997532      22356789999999999999999999964221 1 11111111110    


Q ss_pred             cccchhhccChHHHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 006559          558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRP-----NMSIVHR  600 (640)
Q Consensus       558 ~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RP-----s~~~v~~  600 (640)
                         ++.  .....   ...+.+++.+||+.||++||     ++.++++
T Consensus       227 ---~~~--~~~~~---~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~  266 (332)
T cd05614         227 ---DPP--FPSFI---GPEAQDLLHKLLRKDPKKRLGAGPQGASEIKE  266 (332)
T ss_pred             ---CCC--CCCCC---CHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHc
Confidence               111  11111   22356677789999999999     5666653

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=9.1e-36  Score=310.43  Aligned_cols=229  Identities=20%  Similarity=0.290  Sum_probs=176.3

Q ss_pred             ccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHH-HHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWL-RVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~-~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ++||+|+||.||+|+.. ++..||+|.+....     ....+..|. .+++.++||||+++++++...+..|+||||+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36999999999999964 57889999987541     122334444 467889999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|..++....     .++......++.||+.||+|||+   .+|+||||||+||+++.++.+||+|||+++....    
T Consensus        81 ~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~L~~lH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~  152 (321)
T cd05603          81 GELFFHLQRER-----CFLEPRARFYAAEVASAIGYLHS---LNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEET  152 (321)
T ss_pred             CCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCCc
Confidence            99998886543     47778888899999999999994   4599999999999999999999999999875321    


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                        ...++..|+|||++       ....++.++|||||||++|||++|+.||...+.  ....+.....         ...
T Consensus       153 ~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~--~~~~~~i~~~---------~~~  214 (321)
T cd05603         153 TSTFCGTPEYLAPEVL-------RKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDV--SQMYDNILHK---------PLQ  214 (321)
T ss_pred             cccccCCcccCCHHHh-------cCCCCCCcCcccccchhhhhhhcCCCCCCCCCH--HHHHHHHhcC---------CCC
Confidence              23457889999964       344577899999999999999999999975432  1111111111         111


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMS  596 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~  596 (640)
                      .+..   ...++.+++..|++.+|++||+..
T Consensus       215 ~~~~---~~~~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         215 LPGG---KTVAACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             CCCC---CCHHHHHHHHHHccCCHhhcCCCC
Confidence            1111   123466778889999999999764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.2e-35  Score=298.56  Aligned_cols=242  Identities=23%  Similarity=0.352  Sum_probs=188.4

Q ss_pred             hccccccCcceEEEEEeCC------CcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVLDG------GDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~------~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      .+.||+|+||.||+|...+      +..||+|.+....   ....+.+|+.+++.++||||+++++++......++||||
T Consensus        11 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   90 (277)
T cd05032          11 IRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPTLVVMEL   90 (277)
T ss_pred             EeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCcEEEEec
Confidence            5679999999999998643      3579999987552   234677889999999999999999999999999999999


Q ss_pred             cCCCCHHHhhccCCCC-----CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccc
Q 006559          409 LPHGSLHSLLHGSRGP-----GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ  483 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~-----~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~  483 (640)
                      +++|+|.+++......     ....++|..++.++.|++.||.|||   ..+|+||||||+||+++.++.+||+|||+++
T Consensus        91 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~di~p~nill~~~~~~kl~dfg~~~  167 (277)
T cd05032          91 MAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLA---AKKFVHRDLAARNCMVAEDLTVKIGDFGMTR  167 (277)
T ss_pred             CCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccChheEEEcCCCCEEECCcccch
Confidence            9999999998754311     1224788999999999999999999   4569999999999999999999999999987


Q ss_pred             ccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcc-hHHHHHHhhcc
Q 006559          484 LFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELG-IVKWVQMMGQD  553 (640)
Q Consensus       484 ~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~-~~~~~~~~~~~  553 (640)
                      .....        ...+..|+|||.+       ....++.++|||||||++||++| |+.||...... ...+..   ..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~---~~  237 (277)
T cd05032         168 DIYETDYYRKGGKGLLPVRWMAPESL-------KDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEEVLKFVI---DG  237 (277)
T ss_pred             hhccCcccccCCCCCccccccCHHHH-------hcCCCCcccchHHHHHHHHHhhccCCCCCccCCHHHHHHHHh---cC
Confidence            54321        2235679999964       34457789999999999999999 89998643211 111111   11


Q ss_pred             cccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 006559          554 ESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIE  603 (640)
Q Consensus       554 ~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~  603 (640)
                       ....       .+.   ....++.+++.+||+.+|++|||+.++++.|+
T Consensus       238 -~~~~-------~~~---~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~  276 (277)
T cd05032         238 -GHLD-------LPE---NCPDKLLELMRMCWQYNPKMRPTFLEIVSSLK  276 (277)
T ss_pred             -CCCC-------CCC---CCCHHHHHHHHHHcCCChhhCCCHHHHHHHhc
Confidence             0000       011   12345778888999999999999999999886

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=6.7e-35  Score=293.49  Aligned_cols=238  Identities=23%  Similarity=0.425  Sum_probs=190.0

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHH
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~  416 (640)
                      .+.||+|+||.||++...++..+|+|.+... ....++.+|++++++++||||+++++++......++||||+++|+|.+
T Consensus         9 ~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~   88 (256)
T cd05112           9 VQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEHGCLSD   88 (256)
T ss_pred             EeeecCcccceEEEEEEeCCCeEEEEECCCCCCCHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCCCCcHHH
Confidence            4679999999999999877888999998755 335678899999999999999999999999899999999999999999


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-------c
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-------F  489 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-------~  489 (640)
                      ++....+    .+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||+|||+++.....       .
T Consensus        89 ~~~~~~~----~~~~~~~~~~~~~l~~~l~~lH~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~  161 (256)
T cd05112          89 YLRAQRG----KFSQETLLGMCLDVCEGMAYLES---SNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGT  161 (256)
T ss_pred             HHHhCcc----CCCHHHHHHHHHHHHHHHHHHHH---CCccccccccceEEEcCCCeEEECCCcceeecccCcccccCCC
Confidence            9875432    47899999999999999999994   45999999999999999999999999998754322       1


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..+..|+|||+.       ....++.++|||||||++|||++ |+.||.....  ....+......   ....+..    
T Consensus       162 ~~~~~~~aPe~~-------~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~~~~---~~~~~~~----  225 (256)
T cd05112         162 KFPVKWSSPEVF-------SFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSN--SEVVETINAGF---RLYKPRL----  225 (256)
T ss_pred             ccchhhcCHhHh-------ccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCH--HHHHHHHhCCC---CCCCCCC----
Confidence            124579999954       34557789999999999999998 9999874332  12222211110   0011111    


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMI  602 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L  602 (640)
                          ....+.+++.+||+.+|++||++.+|++.|
T Consensus       226 ----~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l  255 (256)
T cd05112         226 ----ASQSVYELMQHCWKERPEDRPSFSLLLHQL  255 (256)
T ss_pred             ----CCHHHHHHHHHHcccChhhCCCHHHHHHhh
Confidence                124577889999999999999999999886

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=2.3e-35  Score=332.06  Aligned_cols=249  Identities=21%  Similarity=0.280  Sum_probs=191.0

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .++||+|+||.||+|+.. +++.||+|+++..     ...+.+.+|++++++++||||+++++++...+..++||||+++
T Consensus         7 i~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVMEY~eG   86 (932)
T PRK13184          7 IRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTMPYIEG   86 (932)
T ss_pred             EEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEEEcCCC
Confidence            467999999999999864 5889999998754     1235678899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCC------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccccc
Q 006559          412 GSLHSLLHGSRG------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF  485 (640)
Q Consensus       412 gsL~~~l~~~~~------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~  485 (640)
                      |+|.+++.....      .....+++..+++++.|+++||+|||+   .+|+||||||+|||++.++.+||+|||+++..
T Consensus        87 GSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs---~GIIHRDLKPeNILLd~dg~vKLiDFGLAk~i  163 (932)
T PRK13184         87 YTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHS---KGVLHRDLKPDNILLGLFGEVVILDWGAAIFK  163 (932)
T ss_pred             CCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHH---CCccccCCchheEEEcCCCCEEEEecCcceec
Confidence            999999864211      112246678889999999999999994   56999999999999999999999999998765


Q ss_pred             CC------------------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc
Q 006559          486 HT------------------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL  541 (640)
Q Consensus       486 ~~------------------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~  541 (640)
                      ..                        ...+|..|+|||+.       ....++.++|||||||++|||+||+.||.....
T Consensus       164 ~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l-------~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~  236 (932)
T PRK13184        164 KLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERL-------LGVPASESTDIYALGVILYQMLTLSFPYRRKKG  236 (932)
T ss_pred             ccccccccccccccccccccccccCCCCCCCCCCCCHHHh-------cCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcch
Confidence            10                        12468899999964       344567899999999999999999999975322


Q ss_pred             chHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCC-CHHHHHHHHHHhhc
Q 006559          542 GIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRP-NMSIVHRMIEDIRT  607 (640)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RP-s~~~v~~~L~~i~~  607 (640)
                      ....+....         .++....  ...+....+.+++.+|++.||++|| +++++.+.|+....
T Consensus       237 ~ki~~~~~i---------~~P~~~~--p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~~lq  292 (932)
T PRK13184        237 RKISYRDVI---------LSPIEVA--PYREIPPFLSQIAMKALAVDPAERYSSVQELKQDLEPHLQ  292 (932)
T ss_pred             hhhhhhhhc---------cChhhcc--ccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence            211111110         0100000  0112234567788899999999996 57788888888654

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=3.2e-35  Score=307.19  Aligned_cols=190  Identities=20%  Similarity=0.248  Sum_probs=156.3

Q ss_pred             hcccccc--CcceEEEEEe-CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          338 AELLGKG--CVGATYKVVL-DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G--~fg~Vy~~~~-~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      .++||+|  +|++||+++. .+|+.||+|++....    ..+.+.+|+++++.++||||++++++|..++..++||||++
T Consensus         3 ~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~   82 (327)
T cd08227           3 LTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMA   82 (327)
T ss_pred             hhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccC
Confidence            4579999  6889999985 568899999987542    23456778999999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC----
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH----  486 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~----  486 (640)
                      +|+|.+++.....   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.++++|||......    
T Consensus        83 ~~~l~~~~~~~~~---~~l~~~~~~~i~~qi~~~L~~LH~---~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~  156 (327)
T cd08227          83 YGSAKDLICTHFM---DGMSELAIAYILQGVLKALDYIHH---MGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQ  156 (327)
T ss_pred             CCcHHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCChhhEEEecCCcEEEcccchhhccccccc
Confidence            9999999865321   147899999999999999999995   459999999999999999999999998643221    


Q ss_pred             ---------CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCC
Q 006559          487 ---------TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD  538 (640)
Q Consensus       487 ---------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~  538 (640)
                               .....+..|+|||++..     ....++.++|||||||++|||+||+.||..
T Consensus       157 ~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~~~DiwslG~il~el~~g~~pf~~  212 (327)
T cd08227         157 RLRVVHDFPKYSVKVLPWLSPEVLQQ-----NLQGYDAKSDIYSVGITACELANGHVPFKD  212 (327)
T ss_pred             cccccccccccccceecccChHHhhc-----ccCCCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence                     01123567999997532     113467899999999999999999999974

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.3e-35  Score=302.13  Aligned_cols=239  Identities=19%  Similarity=0.224  Sum_probs=184.4

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .++||+|+||.||++.. .++..||||.+....     ....+.+|++++++++||||+++++.+...+..++||||+++
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~   84 (285)
T cd05605           5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNG   84 (285)
T ss_pred             EEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEeccCC
Confidence            46799999999999985 468899999987542     123466799999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....   ...+++..+..++.|++.||+|||+   .+|+||||||+||++++++.++|+|||+++....    
T Consensus        85 ~~L~~~~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~  158 (285)
T cd05605          85 GDLKFHIYNMG---NPGFDEERAVFYAAEITCGLEDLHR---ERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGETI  158 (285)
T ss_pred             CcHHHHHHhcC---cCCCCHHHHHHHHHHHHHHHHHHHH---CCcEecCCCHHHEEECCCCCEEEeeCCCceecCCCCcc
Confidence            99998886432   1258899999999999999999995   4599999999999999999999999999876532    


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchH-HHHHHhhcccccccccchhhc
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIV-KWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~  565 (640)
                       ...++..|+|||++       ....++.++|||||||++|||++|+.||........ +.+.....        .....
T Consensus       159 ~~~~~~~~y~aPE~~-------~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~--------~~~~~  223 (285)
T cd05605         159 RGRVGTVGYMAPEVV-------KNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVK--------EDQEE  223 (285)
T ss_pred             ccccCCCCccCcHHh-------cCCCCCccccchhHHHHHHHHHHCCCCCCCCchhhHHHHHHHHhh--------hcccc
Confidence             12457889999964       344567899999999999999999999975332111 11111000        00000


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRP-----NMSIVHR  600 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RP-----s~~~v~~  600 (640)
                      ...   .....+.+++..||+.||++||     ++.++.+
T Consensus       224 ~~~---~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~  260 (285)
T cd05605         224 YSE---KFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKA  260 (285)
T ss_pred             cCc---ccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhc
Confidence            111   1223466788889999999999     6667643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=4.6e-35  Score=302.41  Aligned_cols=244  Identities=20%  Similarity=0.320  Sum_probs=188.6

Q ss_pred             hhccccccCcceEEEEEeC------CCcEEEEEEecccc---chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEE
Q 006559          337 SAELLGKGCVGATYKVVLD------GGDVVVVKRIRERK---KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVY  406 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~------~~~~vavK~l~~~~---~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~  406 (640)
                      ..+.||+|+||.||++...      .+..||||.++...   ..+.+.+|+++++++ +||||+++++++...+..++||
T Consensus        39 ~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~  118 (302)
T cd05055          39 FGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGPILVIT  118 (302)
T ss_pred             EcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCceEEEE
Confidence            4678999999999999742      24579999887542   234578899999999 7999999999999999999999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||+++|+|.++++....   ..+++.++..++.|++.||+|||+   .+|+|+||||+|||++.++.+|++|||+++...
T Consensus       119 e~~~~~~L~~~i~~~~~---~~l~~~~~~~i~~~i~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~  192 (302)
T cd05055         119 EYCCYGDLLNFLRRKRE---SFLTLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNVLLTHGKIVKICDFGLARDIM  192 (302)
T ss_pred             EcCCCCcHHHHHHhCCC---CCCCHHHHHHHHHHHHHHHHHHHH---CCeehhhhccceEEEcCCCeEEECCCccccccc
Confidence            99999999999975432   237999999999999999999994   459999999999999999999999999987643


Q ss_pred             CC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccc
Q 006559          487 TP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAW  557 (640)
Q Consensus       487 ~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  557 (640)
                      ..        ...+..|+|||.+       ....++.++|||||||++|||+| |+.||....... ...+..... .  
T Consensus       193 ~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~-~~~~~~~~~-~--  261 (302)
T cd05055         193 NDSNYVVKGNARLPVKWMAPESI-------FNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDS-KFYKLIKEG-Y--  261 (302)
T ss_pred             CCCceeecCCCCcccccCCHhhh-------ccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchH-HHHHHHHcC-C--
Confidence            21        1234579999964       33456789999999999999998 999986433211 111111100 0  


Q ss_pred             cccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       558 ~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                      .     .....   ....++.+++.+||+.+|++||++.++++.|+++
T Consensus       262 ~-----~~~~~---~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~  301 (302)
T cd05055         262 R-----MAQPE---HAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ  301 (302)
T ss_pred             c-----CCCCC---CCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence            0     00001   1123577788889999999999999999999874

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=4.2e-35  Score=304.80  Aligned_cols=191  Identities=23%  Similarity=0.419  Sum_probs=155.3

Q ss_pred             hccccccCcceEEEEEeCC---CcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEc--CCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLDG---GDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNG--KDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~---~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~--~~~~~lV~Ey~~~g  412 (640)
                      ..+||+|+||.||+|+..+   +..||+|.+........+.+|++++++++||||+++++++..  ....++||||+++ 
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~-   84 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEH-   84 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCCcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCC-
Confidence            3579999999999999653   467999998766555677889999999999999999999854  4578999999875 


Q ss_pred             CHHHhhccCCC----CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE----CCCCCeEEccCCcccc
Q 006559          413 SLHSLLHGSRG----PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV----DQLGNACISDIGVHQL  484 (640)
Q Consensus       413 sL~~~l~~~~~----~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl----~~~~~~kl~DfGl~~~  484 (640)
                      +|.+++.....    .....+++..+..++.|++.||+|||+   .+|+||||||+|||+    +.++.+||+|||+++.
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~  161 (317)
T cd07867          85 DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPERGRVKIADMGFARL  161 (317)
T ss_pred             cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHh---CCEEcCCCCHHHEEEccCCCCCCcEEEeeccceec
Confidence            77777653211    122358889999999999999999995   459999999999999    5678999999999986


Q ss_pred             cCCC---------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCC
Q 006559          485 FHTP---------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD  538 (640)
Q Consensus       485 ~~~~---------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~  538 (640)
                      ....         ..++..|+|||++.+      ...++.++|||||||++|||+||+.||..
T Consensus       162 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~------~~~~~~~~DiwSlG~il~el~tg~~~f~~  218 (317)
T cd07867         162 FNSPLKPLADLDPVVVTFWYRAPELLLG------ARHYTKAIDIWAIGCIFAELLTSEPIFHC  218 (317)
T ss_pred             cCCCcccccccCcceecccccCcHHhcC------CCccCcHHHHHhHHHHHHHHHhCCCCccc
Confidence            5421         234778999997532      23467899999999999999999999974

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=2e-35  Score=313.61  Aligned_cols=241  Identities=18%  Similarity=0.264  Sum_probs=184.4

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+++.. ++..||+|.+...     ...+.+.+|+.+++.++||||+++++++...+..|+||||+++
T Consensus        48 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~lv~Ey~~g  127 (370)
T cd05596          48 IKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYMVMEYMPG  127 (370)
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEEcCCCC
Confidence            567999999999999864 5789999998643     1234467889999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++...      .++......++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....    
T Consensus       128 g~L~~~l~~~------~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~  198 (370)
T cd05596         128 GDLVNLMSNY------DIPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMV  198 (370)
T ss_pred             CcHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEcCCCCEEEEeccceeeccCCCcc
Confidence            9999998753      36677788899999999999994   5699999999999999999999999999876532    


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         ...++..|+|||++....   ....++.++|||||||++|||+||+.||...... ..+.+....... .     ..
T Consensus       199 ~~~~~~gt~~y~aPE~~~~~~---~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~-~~~~~i~~~~~~-~-----~~  268 (370)
T cd05596         199 RCDTAVGTPDYISPEVLKSQG---GDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLV-GTYSKIMDHKNS-L-----TF  268 (370)
T ss_pred             cCCCCCCCcCeECHHHhccCC---CCCCCCCceeeeehhHHHHHHHhCCCCcCCCCHH-HHHHHHHcCCCc-C-----CC
Confidence               234688999999764321   1234678999999999999999999999754321 111111111000 0     00


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCC--CCCHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKD--RPNMSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~--RPs~~~v~~  600 (640)
                      ......   ..++.+++..|++.+|++  ||++.++++
T Consensus       269 ~~~~~~---s~~~~~li~~~L~~~p~r~~R~s~~ell~  303 (370)
T cd05596         269 PDDIEI---SKQAKDLICAFLTDREVRLGRNGVDEIKS  303 (370)
T ss_pred             CCcCCC---CHHHHHHHHHHccChhhccCCCCHHHHhc
Confidence            000111   234556777799999988  999999964

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.4e-35  Score=295.05  Aligned_cols=241  Identities=24%  Similarity=0.424  Sum_probs=192.4

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHH
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~  416 (640)
                      .+.||+|+||.||++..+++..||||.+... ...+++.+|+.++++++|+||+++++++......++||||+++++|.+
T Consensus        11 ~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~   90 (261)
T cd05034          11 ERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLD   90 (261)
T ss_pred             eeeeccCcceEEEEEEEcCCceEEEEEecCCccCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEeccCCCCHHH
Confidence            5679999999999999888888999998865 345678899999999999999999999998889999999999999999


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-------c
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-------F  489 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-------~  489 (640)
                      ++....+   ..+++..+..++.|++.||+|||.   .+++|+||||+||++++++.+|++|||+++.....       .
T Consensus        91 ~i~~~~~---~~~~~~~~~~~~~~i~~al~~lh~---~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~  164 (261)
T cd05034          91 FLKSGEG---KKLRLPQLVDMAAQIAEGMAYLES---RNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGA  164 (261)
T ss_pred             HHhcccc---CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcchheEEEcCCCCEEECccccceeccchhhhhhhcc
Confidence            9976431   258899999999999999999994   45999999999999999999999999998765421       1


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..+..|+|||.+       ....++.++|||||||++||++| |+.||......  ...+......        ....+.
T Consensus       165 ~~~~~y~~PE~~-------~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~--~~~~~~~~~~--------~~~~~~  227 (261)
T cd05034         165 KFPIKWTAPEAA-------NYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNR--EVLEQVERGY--------RMPRPP  227 (261)
T ss_pred             CCCccccCHHHh-------ccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCC--------CCCCCC
Confidence            224579999964       34456789999999999999999 99998643211  1111111100        000011


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIED  604 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~  604 (640)
                         ....++.+++.+|++.+|++||++.++.+.|+.
T Consensus       228 ---~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         228 ---NCPEELYDLMLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             ---CCCHHHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence               113357778889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.5e-35  Score=314.32  Aligned_cols=237  Identities=17%  Similarity=0.276  Sum_probs=181.3

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+.. +++.||||++...     .....+.+|++++..++||||+++++++...+..|+||||+++
T Consensus         6 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~   85 (364)
T cd05599           6 IKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIMEYLPG   85 (364)
T ss_pred             EEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEECCCCC
Confidence            568999999999999964 5889999999753     1234567899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....     .+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++.+..    
T Consensus        86 g~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~  157 (364)
T cd05599          86 GDMMTLLMKKD-----TFTEEETRFYIAETILAIDSIHK---LGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRT  157 (364)
T ss_pred             cHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeEECCCCCEEEeecccceeccccccc
Confidence            99999997543     48889999999999999999994   5599999999999999999999999999865321    


Q ss_pred             ----------------------------------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHH
Q 006559          488 ----------------------------------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLL  527 (640)
Q Consensus       488 ----------------------------------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~  527 (640)
                                                              ...+|..|+|||++       ....++.++|||||||++|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwSlG~il~  230 (364)
T cd05599         158 EFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVF-------LQTGYNKECDWWSLGVIMY  230 (364)
T ss_pred             cccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHH-------cCCCCCCeeeeecchhHHH
Confidence                                                    12368899999964       3456778999999999999


Q ss_pred             HHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCC---HHHHHH
Q 006559          528 EILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPN---MSIVHR  600 (640)
Q Consensus       528 el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs---~~~v~~  600 (640)
                      ||++|+.||......  +..+.........     .........+.   +.+++.+|+. +|.+|++   +.++++
T Consensus       231 el~~G~~Pf~~~~~~--~~~~~i~~~~~~~-----~~~~~~~~s~~---~~~li~~ll~-~p~~R~~~~~~~~ll~  295 (364)
T cd05599         231 EMLVGYPPFCSDNPQ--ETYRKIINWKETL-----QFPDEVPLSPE---AKDLIKRLCC-EAERRLGNNGVNEIKS  295 (364)
T ss_pred             HhhcCCCCCCCCCHH--HHHHHHHcCCCcc-----CCCCCCCCCHH---HHHHHHHHcc-CHhhcCCCCCHHHHhc
Confidence            999999999754321  1111111100000     00001112233   3445555775 8999998   777754

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=5.8e-35  Score=299.54  Aligned_cols=246  Identities=22%  Similarity=0.330  Sum_probs=188.1

Q ss_pred             hccccccCcceEEEEEeCC------CcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVLDG------GDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~------~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      .+.||+|+||.||+|..++      +..||+|.+....   ....+.+|+.++++++||||+++++++...+..++||||
T Consensus        11 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   90 (288)
T cd05061          11 LRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMEL   90 (288)
T ss_pred             eeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEeC
Confidence            5689999999999997532      4579999886542   234567788999999999999999999999999999999


Q ss_pred             cCCCCHHHhhccCCC-----CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccc
Q 006559          409 LPHGSLHSLLHGSRG-----PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ  483 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~-----~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~  483 (640)
                      +++|+|.+++.....     .+...+++..+..++.|++.||+|||   ..+|+||||||+||++++++.+||+|||+++
T Consensus        91 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dikp~nili~~~~~~~L~Dfg~~~  167 (288)
T cd05061          91 MAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTR  167 (288)
T ss_pred             CCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCCChheEEEcCCCcEEECcCCccc
Confidence            999999999975321     11234677888999999999999999   4569999999999999999999999999987


Q ss_pred             ccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhccc
Q 006559          484 LFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDE  554 (640)
Q Consensus       484 ~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~  554 (640)
                      .....        ...+..|+|||.+       ....++.++|||||||++|||++ |+.||.....  .++.+......
T Consensus       168 ~~~~~~~~~~~~~~~~~~~y~~pE~~-------~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~--~~~~~~~~~~~  238 (288)
T cd05061         168 DIYETDYYRKGGKGLLPVRWMAPESL-------KDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSN--EQVLKFVMDGG  238 (288)
T ss_pred             cccccccccccCCCcccccccCHHHh-------ccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHcCC
Confidence            54321        1224569999954       34456789999999999999999 7888864221  12222211111


Q ss_pred             ccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          555 SAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       555 ~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                      ..      .  ..   ......+.+++.+|++.+|++||++.++++.|++..
T Consensus       239 ~~------~--~~---~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~  279 (288)
T cd05061         239 YL------D--QP---DNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL  279 (288)
T ss_pred             CC------C--CC---CCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhc
Confidence            00      0  00   112345778888999999999999999999988754

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=3.5e-35  Score=301.11  Aligned_cols=244  Identities=21%  Similarity=0.376  Sum_probs=189.1

Q ss_pred             hccccccCcceEEEEEeC------CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVLD------GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~------~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      .+.||+|+||.||+++..      ++..||+|.+....   ..+++.+|+.++++++||||+++++++...+..++||||
T Consensus        10 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   89 (288)
T cd05050          10 VRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPMCLLFEY   89 (288)
T ss_pred             cccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCccEEEEec
Confidence            467999999999999864      35789999987542   245688899999999999999999999998999999999


Q ss_pred             cCCCCHHHhhccCCC-----------------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC
Q 006559          409 LPHGSLHSLLHGSRG-----------------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL  471 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~-----------------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~  471 (640)
                      +++|+|.+++.....                 .....+++..++.++.|++.||+|||.   .+++||||||+||+++++
T Consensus        90 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~---~~i~H~dl~p~nil~~~~  166 (288)
T cd05050          90 MAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSE---RKFVHRDLATRNCLVGEN  166 (288)
T ss_pred             CCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHh---CCeecccccHhheEecCC
Confidence            999999999874321                 112357889999999999999999994   569999999999999999


Q ss_pred             CCeEEccCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcc
Q 006559          472 GNACISDIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELG  542 (640)
Q Consensus       472 ~~~kl~DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~  542 (640)
                      +.+||+|||+++.....        ...+..|+|||..       ....++.++|||||||++|||++ |..||....  
T Consensus       167 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~--  237 (288)
T cd05050         167 MVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESI-------FYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMA--  237 (288)
T ss_pred             CceEECccccceecccCccccccCCCccChhhcCHHHH-------hcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC--
Confidence            99999999998754221        1224569999953       34567789999999999999998 888885321  


Q ss_pred             hHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 006559          543 IVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIED  604 (640)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~  604 (640)
                      ..++........ ...       .+   .....++.+++.+||+.+|++||++.|+++.|++
T Consensus       238 ~~~~~~~~~~~~-~~~-------~~---~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~~  288 (288)
T cd05050         238 HEEVIYYVRDGN-VLS-------CP---DNCPLELYNLMRLCWSKLPSDRPSFASINRILQR  288 (288)
T ss_pred             HHHHHHHHhcCC-CCC-------CC---CCCCHHHHHHHHHHcccCcccCCCHHHHHHHhhC
Confidence            122222221111 000       01   1223457788999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=4.9e-35  Score=301.31  Aligned_cols=236  Identities=20%  Similarity=0.308  Sum_probs=185.7

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      .+.||+|+||.||+|+. .++..|++|.+...  ...+.+.+|+.+++.++|+||+++++.+......++||||+++|+|
T Consensus        25 ~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~~~~~L  104 (296)
T cd06654          25 FEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL  104 (296)
T ss_pred             EEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecccCCCCH
Confidence            45799999999999985 56789999988754  3345677899999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------C
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------P  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------~  488 (640)
                      .+++...      .+++.++..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++....      .
T Consensus       105 ~~~~~~~------~~~~~~~~~i~~ql~~aL~~LH~---~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~  175 (296)
T cd06654         105 TDVVTET------CMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST  175 (296)
T ss_pred             HHHHHhc------CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCCEEECccccchhccccccccCc
Confidence            9998643      37888999999999999999995   4599999999999999999999999999875432      2


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..++..|+|||.+       ....++.++|||||||++|||+||+.||...... ..+..... ..      .+.+... 
T Consensus       176 ~~~~~~y~aPE~~-------~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~-~~~~~~~~-~~------~~~~~~~-  239 (296)
T cd06654         176 MVGTPYWMAPEVV-------TRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL-RALYLIAT-NG------TPELQNP-  239 (296)
T ss_pred             ccCCccccCHHHH-------cCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHH-HhHHHHhc-CC------CCCCCCc-
Confidence            2456789999964       3345678999999999999999999999754321 11111110 00      0000011 


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                        ......+.+++.+||..+|++||++.++++
T Consensus       240 --~~~~~~l~~li~~~l~~~p~~Rpt~~eil~  269 (296)
T cd06654         240 --EKLSAIFRDFLNRCLDMDVEKRGSAKELLQ  269 (296)
T ss_pred             --cccCHHHHHHHHHHCcCCcccCcCHHHHhh
Confidence              112234667888999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=6.5e-36  Score=312.09  Aligned_cols=231  Identities=19%  Similarity=0.276  Sum_probs=178.0

Q ss_pred             ccccccCcceEEEEEe-CCCcEEEEEEecccc-----chHHHHHHH-HHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-----KKREVDEWL-RVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----~~~~~~~e~-~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ++||+|+||.||+|+. .+|+.+|+|.+....     ..+.+..|. .+++.++||||+++++++...+..|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            3699999999999985 468899999987541     223344444 357789999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC-----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----  486 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~-----  486 (640)
                      |+|..++....     .+++.....++.||+.||+|||+   .+|+||||||+|||+++++.+||+|||+++...     
T Consensus        81 ~~L~~~l~~~~-----~~~~~~~~~~~~qi~~al~~lH~---~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~  152 (325)
T cd05604          81 GELFFHLQRER-----SFPEPRARFYAAEIASALGYLHS---INIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDT  152 (325)
T ss_pred             CCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCCC
Confidence            99998887543     57889999999999999999994   559999999999999999999999999987532     


Q ss_pred             -CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          487 -TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       487 -~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                       ....++..|+|||++       ....++.++|||||||++|||++|+.||......  +..+.....         ...
T Consensus       153 ~~~~~gt~~y~aPE~~-------~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~--~~~~~~~~~---------~~~  214 (325)
T cd05604         153 TTTFCGTPEYLAPEVI-------RKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVA--EMYDNILHK---------PLV  214 (325)
T ss_pred             cccccCChhhCCHHHH-------cCCCCCCcCccccccceehhhhcCCCCCCCCCHH--HHHHHHHcC---------Ccc
Confidence             123467889999965       3345678999999999999999999999754321  111111111         111


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIV  598 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v  598 (640)
                      ..+.   ....+.+++..|++.+|++||++++.
T Consensus       215 ~~~~---~~~~~~~ll~~ll~~~p~~R~~~~~~  244 (325)
T cd05604         215 LRPG---ASLTAWSILEELLEKDRQRRLGAKED  244 (325)
T ss_pred             CCCC---CCHHHHHHHHHHhccCHHhcCCCCCC
Confidence            1111   12345567788999999999988643

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=1.5e-35  Score=316.30  Aligned_cols=187  Identities=23%  Similarity=0.356  Sum_probs=159.2

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .++||+|+||.||+|+. .+++.||+|.+....     ..+.+.+|++++++++|||||++++++.+.+..|+|||||++
T Consensus         6 ~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E~~~g   85 (382)
T cd05625           6 IKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIPG   85 (382)
T ss_pred             EEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEeCCCC
Confidence            46799999999999985 457889999987542     234577899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC-----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----  486 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~-----  486 (640)
                      |+|.+++....     .+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++.+.     
T Consensus        86 g~L~~~l~~~~-----~~~e~~~~~~~~qi~~al~~lH~---~~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~  157 (382)
T cd05625          86 GDMMSLLIRMG-----IFPEDLARFYIAELTCAVESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDS  157 (382)
T ss_pred             CcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEEeECCCCccccccccc
Confidence            99999987543     47788888899999999999995   459999999999999999999999999974321     


Q ss_pred             ------------------------------------------------CCccccccccCCccccCCCCccccCCCCCccc
Q 006559          487 ------------------------------------------------TPFFINDAYNAPELKFNNNNNYSQRKFWQRCD  518 (640)
Q Consensus       487 ------------------------------------------------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~D  518 (640)
                                                                      ....+|..|+|||++.       ...++.++|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~-------~~~~~~~~D  230 (382)
T cd05625         158 KYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLL-------RTGYTQLCD  230 (382)
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhc-------CCCCCCeee
Confidence                                                            0124578899999753       345778999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCC
Q 006559          519 VYSFGVVLLEILTGKMAKGDG  539 (640)
Q Consensus       519 V~SfGvvl~el~tg~~p~~~~  539 (640)
                      ||||||++|||+||+.||...
T Consensus       231 iwSlGvil~elltG~~Pf~~~  251 (382)
T cd05625         231 WWSVGVILYEMLVGQPPFLAQ  251 (382)
T ss_pred             EEechHHHHHHHhCCCCCCCC
Confidence            999999999999999999753

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-35  Score=316.30  Aligned_cols=187  Identities=23%  Similarity=0.362  Sum_probs=159.5

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+++. .+++.||||.+....     ..+.+..|++++++++||||+++++++.+.+..|+||||+++
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~E~~~g   85 (377)
T cd05629           6 VKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIMEFLPG   85 (377)
T ss_pred             eEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEEeCCCC
Confidence            46799999999999985 468899999986531     224567899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....     .+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++.+..    
T Consensus        86 g~L~~~l~~~~-----~~~~~~~~~~~~ql~~aL~~LH~---~givHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~  157 (377)
T cd05629          86 GDLMTMLIKYD-----TFSEDVTRFYMAECVLAIEAVHK---LGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDS  157 (377)
T ss_pred             CcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEECCCCCEEEeeccccccccccccc
Confidence            99999987543     47888888999999999999994   5599999999999999999999999999863210    


Q ss_pred             -------------------------------------------------CccccccccCCccccCCCCccccCCCCCccc
Q 006559          488 -------------------------------------------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCD  518 (640)
Q Consensus       488 -------------------------------------------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~D  518 (640)
                                                                       ...+|..|+|||++       ....++.++|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~~~D  230 (377)
T cd05629         158 AYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIF-------LQQGYGQECD  230 (377)
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHH-------ccCCCCCcee
Confidence                                                             12467889999964       3445778999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCC
Q 006559          519 VYSFGVVLLEILTGKMAKGDG  539 (640)
Q Consensus       519 V~SfGvvl~el~tg~~p~~~~  539 (640)
                      ||||||++|||+||+.||...
T Consensus       231 iwSlGvil~elltG~~Pf~~~  251 (377)
T cd05629         231 WWSLGAIMFECLIGWPPFCSE  251 (377)
T ss_pred             eEecchhhhhhhcCCCCCCCC
Confidence            999999999999999999753

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=8.2e-35  Score=293.14  Aligned_cols=242  Identities=28%  Similarity=0.396  Sum_probs=191.2

Q ss_pred             ccccccCcceEEEEEeCC----CcEEEEEEeccccc---hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKGCVGATYKVVLDG----GDVVVVKRIRERKK---KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~----~~~vavK~l~~~~~---~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      +.||+|+||.||+|....    +..|++|.+.....   .+.+.+|++.++.++|+||+++++++......++||||+++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG   80 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC
Confidence            469999999999999654    77899999986633   46788899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCC----CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          412 GSLHSLLHGSRGP----GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       412 gsL~~~l~~~~~~----~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      |+|.+++......    ....+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||+|||.++....
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~  157 (262)
T cd00192          81 GDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLAS---KKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYD  157 (262)
T ss_pred             CcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHc---CCcccCccCcceEEECCCCcEEEccccccccccc
Confidence            9999999864210    01368999999999999999999994   5699999999999999999999999999887643


Q ss_pred             C--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhccccccc
Q 006559          488 P--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWE  558 (640)
Q Consensus       488 ~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~  558 (640)
                      .        ...+..|+|||.+       ....++.++||||+||++|||++ |+.||....  .....+.......   
T Consensus       158 ~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~--~~~~~~~~~~~~~---  225 (262)
T cd00192         158 DDYYRKKTGGKLPIRWMAPESL-------KDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLS--NEEVLEYLRKGYR---  225 (262)
T ss_pred             ccccccccCCCcCccccCHHHh-------ccCCcchhhccHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHHHcCCC---
Confidence            2        2346789999964       33367789999999999999999 699987542  1222222211100   


Q ss_pred             ccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 006559          559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIE  603 (640)
Q Consensus       559 ~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~  603 (640)
                           .....   ....++.+++.+||+.+|++||++.++++.|+
T Consensus       226 -----~~~~~---~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~  262 (262)
T cd00192         226 -----LPKPE---YCPDELYELMLSCWQLDPEDRPTFSELVERLE  262 (262)
T ss_pred             -----CCCCc---cCChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence                 00111   11345777888899999999999999998773

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=1.9e-35  Score=308.66  Aligned_cols=232  Identities=18%  Similarity=0.259  Sum_probs=178.3

Q ss_pred             ccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ++||+|+||.||+|+.. ++..||+|.++...     ..+.+..|+.++.++ +||||+++++++...+..|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            36999999999999964 57889999997542     223466788888777 699999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC-----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----  486 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~-----  486 (640)
                      |+|..++....     .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++...     
T Consensus        81 ~~L~~~~~~~~-----~l~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~  152 (327)
T cd05617          81 GDLMFHMQRQR-----KLPEEHARFYAAEICIALNFLHE---RGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDT  152 (327)
T ss_pred             CcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEeCCCCEEEeccccceeccCCCCc
Confidence            99999886543     58899999999999999999995   459999999999999999999999999987531     


Q ss_pred             -CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC----CcchHHHHHHhhcccccccccc
Q 006559          487 -TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG----ELGIVKWVQMMGQDESAWEVFD  561 (640)
Q Consensus       487 -~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~----~~~~~~~~~~~~~~~~~~~~~d  561 (640)
                       ....++..|+|||++       ....++.++|||||||++|||+||+.||...    ......+.......        
T Consensus       153 ~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~--------  217 (327)
T cd05617         153 TSTFCGTPNYIAPEIL-------RGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILE--------  217 (327)
T ss_pred             eecccCCcccCCHHHH-------CCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHh--------
Confidence             123468899999964       3456678999999999999999999999631    11111111111110        


Q ss_pred             hhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHH
Q 006559          562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMS  596 (640)
Q Consensus       562 ~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~  596 (640)
                      .....+...+   ..+.+++.+|++.||++||++.
T Consensus       218 ~~~~~p~~~~---~~~~~li~~~L~~dP~~R~~~~  249 (327)
T cd05617         218 KPIRIPRFLS---VKASHVLKGFLNKDPKERLGCQ  249 (327)
T ss_pred             CCCCCCCCCC---HHHHHHHHHHhccCHHHcCCCC
Confidence            0011111112   2356677889999999999853

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=6.8e-35  Score=296.21  Aligned_cols=243  Identities=19%  Similarity=0.306  Sum_probs=184.7

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-cchHHHHHHHHHHhcc-CCCcccceeEEEEcC------CeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGK------DELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~------~~~~lV~Ey  408 (640)
                      .+.||+|+||.||+|... .++.||+|.+... .....+..|+.++.++ +|+||+++.+++...      ...|+||||
T Consensus        11 ~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~   90 (272)
T cd06637          11 VELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEF   90 (272)
T ss_pred             HHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcEEEEEEEc
Confidence            467999999999999864 5788999998654 3345677888888888 699999999998753      468999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-  487 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-  487 (640)
                      +++|+|.+++....   ...+++..+..++.|++.||+|||+   .+|+||||||+||++++++.+||+|||+++.... 
T Consensus        91 ~~~~~L~~~l~~~~---~~~l~~~~~~~~~~qi~~~l~~LH~---~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~~~  164 (272)
T cd06637          91 CGAGSVTDLIKNTK---GNTLKEEWIAYICREILRGLSHLHQ---HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRT  164 (272)
T ss_pred             CCCCcHHHHHHhcc---CCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHEEECCCCCEEEccCCCceecccc
Confidence            99999999987543   2358899999999999999999995   4599999999999999999999999999876532 


Q ss_pred             -----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccch
Q 006559          488 -----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       488 -----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                           ...++..|+|||++....  .....++.++|||||||++|||++|+.||.+...... .... ...      ...
T Consensus       165 ~~~~~~~~g~~~y~aPE~~~~~~--~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~~-~~~~-~~~------~~~  234 (272)
T cd06637         165 VGRRNTFIGTPYWMAPEVIACDE--NPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRA-LFLI-PRN------PAP  234 (272)
T ss_pred             cccCCcccccccccCHhHhcccc--CcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHHHH-HHHH-hcC------CCC
Confidence                 124577899999764321  1134577899999999999999999999964321111 1100 000      000


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .. ...   ....++.+++.+||..+|.+||++.++++
T Consensus       235 ~~-~~~---~~~~~~~~li~~~l~~~p~~Rpt~~~il~  268 (272)
T cd06637         235 RL-KSK---KWSKKFQSFIESCLVKNHSQRPTTEQLMK  268 (272)
T ss_pred             CC-CCC---CcCHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence            11 011   12235677888999999999999999864

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=2.3e-35  Score=313.78  Aligned_cols=248  Identities=17%  Similarity=0.256  Sum_probs=183.4

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCC-----eEEEEEe
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKD-----ELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~-----~~~lV~E  407 (640)
                      .+.||+|+||.||+++. .+++.||||++...    ...+.+.+|+++++.++|+||+++++++...+     ..|+|||
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e   84 (372)
T cd07853           5 DRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIYVVTE   84 (372)
T ss_pred             cceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEEEEee
Confidence            56799999999999995 56889999998653    22356778999999999999999999998776     7999999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      |+. ++|.+++....     .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....
T Consensus        85 ~~~-~~l~~~~~~~~-----~l~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~  155 (372)
T cd07853          85 LMQ-SDLHKIIVSPQ-----PLSSDHVKVFLYQILRGLKYLHS---AGILHRDIKPGNLLVNSNCVLKICDFGLARVEEP  155 (372)
T ss_pred             ccc-cCHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChHHEEECCCCCEEeccccceeeccc
Confidence            997 58888876432     58899999999999999999995   4599999999999999999999999999876432


Q ss_pred             -------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHhhcccccccc
Q 006559          488 -------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQDESAWEV  559 (640)
Q Consensus       488 -------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~~~~  559 (640)
                             ....+..|+|||++.+      ...++.++|||||||++|||++|+.||...... ....+............
T Consensus       156 ~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~  229 (372)
T cd07853         156 DESKHMTQEVVTQYYRAPEILMG------SRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAM  229 (372)
T ss_pred             CccccCCCCCcCCCcCCHHHHcC------CCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHH
Confidence                   2234778999997532      234678999999999999999999999753211 11111100000000000


Q ss_pred             ----------cchhhccChH-------HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 ----------FDFELIMDKE-------MEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 ----------~d~~~~~~~~-------~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                                +.......+.       ......++.+++.+|++.||++|||+.|+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~  287 (372)
T cd07853         230 RSACEGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALA  287 (372)
T ss_pred             HHhhHHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhc
Confidence                      0000000000       0011345678888999999999999999875

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=1.2e-35  Score=310.75  Aligned_cols=244  Identities=20%  Similarity=0.271  Sum_probs=186.1

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+++. .+++.||+|.++...     ..+.+.+|+.+++.++|+||+++++++...+..++||||+++
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   85 (330)
T cd05601           6 KSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVMEYQPG   85 (330)
T ss_pred             EEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEECCCCC
Confidence            56799999999999985 468899999997542     234577889999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---  488 (640)
                      |+|.+++....    ..+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++.....   
T Consensus        86 ~~L~~~l~~~~----~~l~~~~~~~~~~qi~~aL~~lH~---~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~  158 (330)
T cd05601          86 GDLLSLLNRYE----DQFDEDMAQFYLAELVLAIHSVHQ---MGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMV  158 (330)
T ss_pred             CCHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCeEcccCchHheEECCCCCEEeccCCCCeECCCCCce
Confidence            99999997642    258889999999999999999994   55999999999999999999999999998765421   


Q ss_pred             ----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          489 ----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       489 ----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                          ..++..|+|||++...... ....++.++|||||||++|||+||+.||.....  ...............     .
T Consensus       159 ~~~~~~gt~~y~aPE~~~~~~~~-~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~--~~~~~~i~~~~~~~~-----~  230 (330)
T cd05601         159 NSKLPVGTPDYIAPEVLTTMNGD-GKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTS--AKTYNNIMNFQRFLK-----F  230 (330)
T ss_pred             eeecccCCccccCHHHhcccccc-ccCCCCCcceeecccceeeeeccCCCCCCCCCH--HHHHHHHHcCCCccC-----C
Confidence                2457889999976432111 244677899999999999999999999975322  111111111100000     0


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .......   .++.+++..|+. +|++||++.+++.
T Consensus       231 ~~~~~~~---~~~~~li~~ll~-~p~~R~t~~~l~~  262 (330)
T cd05601         231 PEDPKVS---SDFLDLIQSLLC-GQKERLGYEGLCC  262 (330)
T ss_pred             CCCCCCC---HHHHHHHHHHcc-ChhhCCCHHHHhC
Confidence            0011112   234556666887 9999999998874

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=1.6e-34  Score=302.89  Aligned_cols=253  Identities=21%  Similarity=0.367  Sum_probs=194.5

Q ss_pred             hhccccccCcceEEEEEeCC--------CcEEEEEEecccc---chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEE
Q 006559          337 SAELLGKGCVGATYKVVLDG--------GDVVVVKRIRERK---KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFL  404 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~--------~~~vavK~l~~~~---~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  404 (640)
                      ..+.||+|+||.||+++..+        +..||+|.++...   ..+++.+|+++++++ +||||++++++|...+..++
T Consensus        16 i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~l   95 (334)
T cd05100          16 LGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYV   95 (334)
T ss_pred             ecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCCceEE
Confidence            45789999999999997421        2368999887542   235678899999999 79999999999999999999


Q ss_pred             EEeccCCCCHHHhhccCCC-----------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC
Q 006559          405 VYDYLPHGSLHSLLHGSRG-----------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN  473 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~~-----------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~  473 (640)
                      ||||+++|+|.+++.....           .....++|..++.++.|++.||+|||   ..+|+||||||+|||++.++.
T Consensus        96 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~givH~dlkp~Nill~~~~~  172 (334)
T cd05100          96 LVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLA---SQKCIHRDLAARNVLVTEDNV  172 (334)
T ss_pred             EEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH---HCCeeccccccceEEEcCCCc
Confidence            9999999999999875421           11235889999999999999999999   456999999999999999999


Q ss_pred             eEEccCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchH
Q 006559          474 ACISDIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIV  544 (640)
Q Consensus       474 ~kl~DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~  544 (640)
                      +||+|||+++.....        ...+..|+|||++       ....++.++|||||||++|||++ |..||....  ..
T Consensus       173 ~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~--~~  243 (334)
T cd05100         173 MKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEAL-------FDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP--VE  243 (334)
T ss_pred             EEECCcccceecccccccccccCCCcCceEcCHHHh-------ccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCC--HH
Confidence            999999998765321        1123469999964       34456789999999999999999 888886432  22


Q ss_pred             HHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCCCC
Q 006559          545 KWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSID  612 (640)
Q Consensus       545 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~~~  612 (640)
                      ++.+........ .       ..   .....++.+++.+||+.+|++||+|.|+++.|+++......+
T Consensus       244 ~~~~~~~~~~~~-~-------~~---~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~~~~~~~  300 (334)
T cd05100         244 ELFKLLKEGHRM-D-------KP---ANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVLTVTSTD  300 (334)
T ss_pred             HHHHHHHcCCCC-C-------CC---CCCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHhhhcCCC
Confidence            233222211100 0       00   112335778888999999999999999999999998655443

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=6.1e-35  Score=293.58  Aligned_cols=239  Identities=25%  Similarity=0.387  Sum_probs=187.7

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHHh
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSL  417 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~~  417 (640)
                      .+.||+|+||.||++.. .+..||+|.++.......+.+|+.++++++||||+++++++.. +..++||||+++|+|.++
T Consensus        11 ~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~~v~e~~~~~~L~~~   88 (254)
T cd05083          11 GEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDVTAQAFLEETAVMTKLHHKNLVRLLGVILH-NGLYIVMELMSKGNLVNF   88 (254)
T ss_pred             eeeeccCCCCceEeccc-CCCceEEEeecCcchHHHHHHHHHHHHhCCCCCcCeEEEEEcC-CCcEEEEECCCCCCHHHH
Confidence            56899999999999875 5678999998766556678899999999999999999999875 457999999999999999


Q ss_pred             hccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---cccccc
Q 006559          418 LHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---FFINDA  494 (640)
Q Consensus       418 l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---~~~~~~  494 (640)
                      +....   ...+++..+..++.|++.||.|||   +.+++||||||+||+++.++.+||+|||+++.....   ...+..
T Consensus        89 l~~~~---~~~~~~~~~~~~~~qi~~al~~lH---~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  162 (254)
T cd05083          89 LRTRG---RALVSVIQLLQFSLDVAEGMEYLE---SKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVK  162 (254)
T ss_pred             HHhcC---cCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccCcceEEEcCCCcEEECCCccceeccccCCCCCCCce
Confidence            97543   225788999999999999999999   456999999999999999999999999998764322   222457


Q ss_pred             ccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHHH
Q 006559          495 YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEE  573 (640)
Q Consensus       495 y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  573 (640)
                      |+|||.+       ....++.++|||||||++|||++ |+.||.....  ..+........   . .+    ..   ...
T Consensus       163 y~~pe~~-------~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~~~~---~-~~----~~---~~~  222 (254)
T cd05083         163 WTAPEAL-------KHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSL--KEVKECVEKGY---R-ME----PP---EGC  222 (254)
T ss_pred             ecCHHHh-------ccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCH--HHHHHHHhCCC---C-CC----CC---CcC
Confidence            9999954       34467789999999999999998 9999865332  12222211110   0 00    01   112


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 006559          574 MRALLQVALLCLAPLPKDRPNMSIVHRMIED  604 (640)
Q Consensus       574 ~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~  604 (640)
                      ...+.+++.+||+.+|++||++.+++..|++
T Consensus       223 ~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  253 (254)
T cd05083         223 PADVYVLMTSCWETEPKKRPSFHKLREKLEK  253 (254)
T ss_pred             CHHHHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence            3456678889999999999999999998863

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=8.5e-35  Score=293.65  Aligned_cols=240  Identities=21%  Similarity=0.396  Sum_probs=189.6

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEecccc-chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERK-KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~-~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ..+.||+|+||.||++...++..+|+|.+.... ....+.+|++++++++|+||+++.+++.. ...++||||+++|+|.
T Consensus        10 ~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~e~~~~~~L~   88 (260)
T cd05073          10 LEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEFMAKGSLL   88 (260)
T ss_pred             EEeEecCccceEEEEEEecCCccEEEEecCCChhHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEEEeCCCCcHH
Confidence            356799999999999998888889999887653 34568889999999999999999999887 7889999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc------
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------  489 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~------  489 (640)
                      +++.....   ..+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||+|||++.......      
T Consensus        89 ~~~~~~~~---~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~  162 (260)
T cd05073          89 DFLKSDEG---SKQPLPKLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREG  162 (260)
T ss_pred             HHHHhCCc---cccCHHHHHHHHHHHHHHHHHHHh---CCccccccCcceEEEcCCCcEEECCCcceeeccCCCcccccC
Confidence            99976432   257889999999999999999994   569999999999999999999999999987654211      


Q ss_pred             -cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcc-hHHHHHHhhcccccccccchhhcc
Q 006559          490 -FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELG-IVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       490 -~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                       ..+..|+|||++       ....++.++|||||||++||++| |+.||...... ...+..   ...        ....
T Consensus       163 ~~~~~~y~~PE~~-------~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~---~~~--------~~~~  224 (260)
T cd05073         163 AKFPIKWTAPEAI-------NFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALE---RGY--------RMPR  224 (260)
T ss_pred             CcccccccCHhHh-------ccCCcCccccchHHHHHHHHHHhcCCCCCCCCCHHHHHHHHh---CCC--------CCCC
Confidence             123569999964       33456789999999999999999 89998743221 121111   110        0000


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIED  604 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~  604 (640)
                      .   .....++.+++.+||+.+|++||++.++.+.|+.
T Consensus       225 ~---~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         225 P---ENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD  259 (260)
T ss_pred             c---ccCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence            1   1223457778889999999999999999999975

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=8.6e-35  Score=301.27  Aligned_cols=250  Identities=20%  Similarity=0.283  Sum_probs=186.8

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||.||+++.. ++..+|+|.+....   ...++.+|++++.+++||||++++++|...+..++||||+++|+
T Consensus         6 ~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey~~~~~   85 (308)
T cd06615           6 LGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGS   85 (308)
T ss_pred             EeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeeccCCCc
Confidence            567999999999999854 57788999886542   23457789999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----Cc
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----PF  489 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----~~  489 (640)
                      |.++++...     .+++.....++.|+++||.|||+.  .+++||||||+|||++.++.+||+|||++.....    ..
T Consensus        86 L~~~l~~~~-----~~~~~~~~~~~~~i~~~l~~lH~~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~  158 (308)
T cd06615          86 LDQVLKKAG-----RIPENILGKISIAVLRGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSF  158 (308)
T ss_pred             HHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHhh--CCEEECCCChHHEEEecCCcEEEccCCCcccccccccccC
Confidence            999997543     578889999999999999999952  3699999999999999999999999999876532    23


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHhhcccccc-----------
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQDESAW-----------  557 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~~-----------  557 (640)
                      .++..|+|||+.       ....++.++|||||||++|||+||+.||...... ...+...........           
T Consensus       159 ~~~~~~~aPE~~-------~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (308)
T cd06615         159 VGTRSYMSPERL-------QGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVSGHPP  231 (308)
T ss_pred             CCCcCccChhHh-------cCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhhHHHhhcCccccccccCCcccccCCCC
Confidence            457789999964       3345678999999999999999999998643211 111111100000000           


Q ss_pred             ---------cccchhhc-cChHH--HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          558 ---------EVFDFELI-MDKEM--EEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       558 ---------~~~d~~~~-~~~~~--~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                               +..+.... ..+..  .....++.+++.+||+.+|++||++.++++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  287 (308)
T cd06615         232 DSPRPMAIFELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKH  287 (308)
T ss_pred             CccchhhHHHHHHHHhcCCCccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                     00000000 00000  0112357788999999999999999998764

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.3e-34  Score=290.51  Aligned_cols=238  Identities=25%  Similarity=0.385  Sum_probs=188.0

Q ss_pred             ccccccCcceEEEEEeCCCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ++||+|+||.||++...+++.||+|.+....   ....+.+|++++++++|+||+++++++......++||||+++++|.
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~   80 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLL   80 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHH
Confidence            3689999999999998778999999987652   3456888999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-------
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-------  488 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-------  488 (640)
                      +++.....    .+++..+..++.+++.||+|||+   .+++||||||+||+++.++.+||+|||+++.....       
T Consensus        81 ~~l~~~~~----~~~~~~~~~~~~~~~~~l~~lH~---~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~  153 (251)
T cd05041          81 TFLRKKKN----RLTVKKLLQMSLDAAAGMEYLES---KNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDG  153 (251)
T ss_pred             HHHHhcCC----CCCHHHHHHHHHHHHHHHHHHHh---CCEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccc
Confidence            99975431    47888999999999999999994   45999999999999999999999999998765421       


Q ss_pred             -ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          489 -FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 -~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                       ...+..|+|||.+       ....++.++|||||||++|||+| |..||......  ..........        ....
T Consensus       154 ~~~~~~~y~~PE~~-------~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~--~~~~~~~~~~--------~~~~  216 (251)
T cd05041         154 LKQIPIKWTAPEAL-------NYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQ--QTRERIESGY--------RMPA  216 (251)
T ss_pred             cCcceeccCChHhh-------ccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHH--HHHHHHhcCC--------CCCC
Confidence             1124469999964       33456789999999999999999 78888643211  1111111100        0001


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIE  603 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~  603 (640)
                      +   ......+.+++.+|+..+|++||++.|+++.|+
T Consensus       217 ~---~~~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~  250 (251)
T cd05041         217 P---QLCPEEIYRLMLQCWAYDPENRPSFSEIYNELQ  250 (251)
T ss_pred             C---ccCCHHHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence            1   112335777888999999999999999999886

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=2.1e-35  Score=307.96  Aligned_cols=229  Identities=20%  Similarity=0.287  Sum_probs=177.2

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      .+.||+|+||.||+|+.. ++..||||.+....     ..+.+..|.+++..+ +|++|+++.+++...+..|+||||++
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~   84 (323)
T cd05616           5 LMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVMEYVN   84 (323)
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEEcCCC
Confidence            467999999999999865 56789999987542     122345566666665 58999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC----
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH----  486 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~----  486 (640)
                      +|+|.+++....     .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++...    
T Consensus        85 ~g~L~~~~~~~~-----~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~  156 (323)
T cd05616          85 GGDLMYQIQQVG-----RFKEPHAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGV  156 (323)
T ss_pred             CCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCEEecCCCHHHeEECCCCcEEEccCCCceecCCCCC
Confidence            999999987543     47889999999999999999994   569999999999999999999999999987532    


Q ss_pred             --CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          487 --TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       487 --~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                        ....++..|+|||++       ....++.++|||||||++|||+||+.||.......  ..+.....         ..
T Consensus       157 ~~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~~--~~~~i~~~---------~~  218 (323)
T cd05616         157 TTKTFCGTPDYIAPEII-------AYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE--LFQSIMEH---------NV  218 (323)
T ss_pred             ccccCCCChhhcCHHHh-------cCCCCCCccchhchhHHHHHHHhCCCCCCCCCHHH--HHHHHHhC---------CC
Confidence              123468899999965       34557789999999999999999999997543211  11111110         11


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNM  595 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~  595 (640)
                      ..+...   ..++.+++.+|++.+|++|++.
T Consensus       219 ~~p~~~---s~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05616         219 AYPKSM---SKEAVAICKGLMTKHPGKRLGC  246 (323)
T ss_pred             CCCCcC---CHHHHHHHHHHcccCHHhcCCC
Confidence            111112   2345677888999999999984

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=1.4e-35  Score=316.05  Aligned_cols=187  Identities=23%  Similarity=0.361  Sum_probs=159.4

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+++. .+++.||||.+...     .....+.+|++++++++|+||+++++.+...+..|+||||+++
T Consensus         6 ~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~   85 (376)
T cd05598           6 IKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPG   85 (376)
T ss_pred             EEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEeCCCC
Confidence            46799999999999985 45889999998653     1234577899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC-----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----  486 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~-----  486 (640)
                      |+|.+++....     .++......++.||+.||+|||+   .+|+||||||+|||++.++.+||+|||++..+.     
T Consensus        86 g~L~~~i~~~~-----~~~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~  157 (376)
T cd05598          86 GDMMSLLIRLG-----IFEEDLARFYIAELTCAIESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDS  157 (376)
T ss_pred             CcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHHHEEECCCCCEEEEeCCCCccccccccc
Confidence            99999997543     47788888899999999999994   559999999999999999999999999974221     


Q ss_pred             --------------------------------------------CCccccccccCCccccCCCCccccCCCCCccchHHH
Q 006559          487 --------------------------------------------TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSF  522 (640)
Q Consensus       487 --------------------------------------------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~Sf  522 (640)
                                                                  ....+|..|+|||++       ....++.++|||||
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwSl  230 (376)
T cd05598         158 KYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVL-------LRTGYTQLCDWWSV  230 (376)
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHH-------cCCCCCcceeeeec
Confidence                                                        012467889999975       33456789999999


Q ss_pred             HHHHHHHHhCCCCCCCC
Q 006559          523 GVVLLEILTGKMAKGDG  539 (640)
Q Consensus       523 Gvvl~el~tg~~p~~~~  539 (640)
                      ||++|||+||+.||...
T Consensus       231 Gvilyell~G~~Pf~~~  247 (376)
T cd05598         231 GVILYEMLVGQPPFLAD  247 (376)
T ss_pred             cceeeehhhCCCCCCCC
Confidence            99999999999999754

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=1.1e-34  Score=300.63  Aligned_cols=249  Identities=17%  Similarity=0.309  Sum_probs=184.2

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||.||+|+.. ++..||+|.++..   .....+.+|++++++++||||+++++++..++..++||||+++ +
T Consensus        11 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~   89 (309)
T cd07872          11 LEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEYLDK-D   89 (309)
T ss_pred             EEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeCCCC-C
Confidence            467999999999999864 5778999998744   2234567899999999999999999999999999999999975 8


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------  487 (640)
                      |.+++....    ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....      
T Consensus        90 l~~~~~~~~----~~~~~~~~~~~~~qi~~aL~~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~  162 (309)
T cd07872          90 LKQYMDDCG----NIMSMHNVKIFLYQILRGLAYCHR---RKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYS  162 (309)
T ss_pred             HHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEECccccceecCCCccccc
Confidence            888876543    247888899999999999999994   5699999999999999999999999999876432      


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHH-HHHHhhcc-ccccccc----
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVK-WVQMMGQD-ESAWEVF----  560 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~-~~~~~~~~-~~~~~~~----  560 (640)
                      ....+..|+|||++.+      ...++.++|||||||++|||+||+.||...... ... ..+..... ...+...    
T Consensus       163 ~~~~~~~y~aPE~~~~------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (309)
T cd07872         163 NEVVTLWYRPPDVLLG------SSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSND  236 (309)
T ss_pred             cccccccccCCHHHhC------CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchh
Confidence            1234778999997532      235678999999999999999999999754321 111 11111110 0001000    


Q ss_pred             ---chhhc--cC----hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          561 ---DFELI--MD----KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       561 ---d~~~~--~~----~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                         +....  ..    ........++.+++.+|++.||++|||+.|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~  285 (309)
T cd07872         237 EFKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMK  285 (309)
T ss_pred             hhhhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhc
Confidence               00000  00    000112235677888999999999999999875

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=8.2e-35  Score=292.63  Aligned_cols=239  Identities=21%  Similarity=0.326  Sum_probs=188.9

Q ss_pred             hhccccccCcceEEEEEeCC-CcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          337 SAELLGKGCVGATYKVVLDG-GDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ..+.||+|+||.||+|+... +..+++|.+......+++.+|++++++++|+||+++++++......|+++||+++++|.
T Consensus         7 ~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~   86 (256)
T cd06612           7 ILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYCGAGSVS   86 (256)
T ss_pred             hhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecCCCCcHH
Confidence            35679999999999999765 78899999876655678899999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC------c
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP------F  489 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~------~  489 (640)
                      +++....    ..+++.....++.|++.||.|||+   .+++||||+|+||++++++.+||+|||++......      .
T Consensus        87 ~~l~~~~----~~l~~~~~~~~~~~l~~~l~~lh~---~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~  159 (256)
T cd06612          87 DIMKITN----KTLTEEEIAAILYQTLKGLEYLHS---NKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTV  159 (256)
T ss_pred             HHHHhCc----cCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEECCCCcEEEcccccchhcccCccccccc
Confidence            9986533    258999999999999999999994   45999999999999999999999999998765432      2


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChH
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKE  569 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  569 (640)
                      .++..|+|||++       ....++.++|||||||++|||+||+.||....... ... .....      ........  
T Consensus       160 ~~~~~y~~PE~~-------~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~-~~~-~~~~~------~~~~~~~~--  222 (256)
T cd06612         160 IGTPFWMAPEVI-------QEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMR-AIF-MIPNK------PPPTLSDP--  222 (256)
T ss_pred             cCCccccCHHHH-------hcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhh-hhh-hhccC------CCCCCCch--
Confidence            346789999964       33467789999999999999999999987432110 000 00000      00000011  


Q ss_pred             HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          570 MEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       570 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       ......+.+++.+||+.+|++||++.+|++
T Consensus       223 -~~~~~~~~~~i~~~l~~~P~~Rps~~~il~  252 (256)
T cd06612         223 -EKWSPEFNDFVKKCLVKDPEERPSAIQLLQ  252 (256)
T ss_pred             -hhcCHHHHHHHHHHHhcChhhCcCHHHHhc
Confidence             112235677788899999999999999875

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=1.2e-34  Score=294.20  Aligned_cols=244  Identities=20%  Similarity=0.320  Sum_probs=189.4

Q ss_pred             hhccccccCcceEEEEEeCCC----cEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLDGG----DVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~----~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ..+.||+|+||.||+|...+.    ..||||......   ..+.+.+|++++++++||||+++++++.. +..++||||+
T Consensus        10 ~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~lv~e~~   88 (270)
T cd05056          10 LGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPVWIVMELA   88 (270)
T ss_pred             eeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCcEEEEEcC
Confidence            356899999999999986432    468899887543   34568889999999999999999999875 5678999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-  488 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-  488 (640)
                      ++|+|.+++....    ..+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||+|||+++..... 
T Consensus        89 ~~~~L~~~l~~~~----~~~~~~~~~~~~~~l~~~l~~lH~---~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~  161 (270)
T cd05056          89 PLGELRSYLQVNK----YSLDLASLILYSYQLSTALAYLES---KRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDES  161 (270)
T ss_pred             CCCcHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccChheEEEecCCCeEEccCceeeeccccc
Confidence            9999999997543    247899999999999999999994   55999999999999999999999999998765322 


Q ss_pred             ------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcc-hHHHHHHhhccccccccc
Q 006559          489 ------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELG-IVKWVQMMGQDESAWEVF  560 (640)
Q Consensus       489 ------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~  560 (640)
                            ...+..|+|||..       ....++.++|||||||++||+++ |+.||...... ...+..   .....    
T Consensus       162 ~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~---~~~~~----  227 (270)
T cd05056         162 YYKASKGKLPIKWMAPESI-------NFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVIGRIE---NGERL----  227 (270)
T ss_pred             ceecCCCCccccccChhhh-------ccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH---cCCcC----
Confidence                  1123469999953       34567789999999999999996 99999753221 111111   11000    


Q ss_pred             chhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 006559          561 DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG  609 (640)
Q Consensus       561 d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~  609 (640)
                          ....   .....+.+++.+|+..+|++|||+.++++.|+++..+.
T Consensus       228 ----~~~~---~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~~~~  269 (270)
T cd05056         228 ----PMPP---NCPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDILQEE  269 (270)
T ss_pred             ----CCCC---CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence                0111   12235677888899999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=1.3e-34  Score=300.78  Aligned_cols=249  Identities=20%  Similarity=0.384  Sum_probs=190.5

Q ss_pred             hhccccccCcceEEEEEeC--------CCcEEEEEEeccccc---hHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEE
Q 006559          337 SAELLGKGCVGATYKVVLD--------GGDVVVVKRIRERKK---KREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFL  404 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~--------~~~~vavK~l~~~~~---~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  404 (640)
                      ..+.||+|+||.||+++..        ....+|+|.++....   ..++..|+++++++ +||||+++++++...+..++
T Consensus        16 ~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~l   95 (314)
T cd05099          16 LGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQEGPLYV   95 (314)
T ss_pred             eeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccCCceEE
Confidence            3578999999999999742        245689998875432   34567889999988 69999999999998899999


Q ss_pred             EEeccCCCCHHHhhccCCCC-----------CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC
Q 006559          405 VYDYLPHGSLHSLLHGSRGP-----------GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN  473 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~  473 (640)
                      ||||+++|+|.+++......           ....++|..+++++.|++.||+|||   ..+|+||||||+|||++.++.
T Consensus        96 v~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~gi~H~dlkp~Nill~~~~~  172 (314)
T cd05099          96 IVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLE---SRRCIHRDLAARNVLVTEDNV  172 (314)
T ss_pred             EEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHH---HCCeeeccccceeEEEcCCCc
Confidence            99999999999999754310           1135889999999999999999999   456999999999999999999


Q ss_pred             eEEccCCcccccCCC------c--cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchH
Q 006559          474 ACISDIGVHQLFHTP------F--FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIV  544 (640)
Q Consensus       474 ~kl~DfGl~~~~~~~------~--~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~  544 (640)
                      +||+|||+++.....      .  ..+..|+|||++       ....++.++|||||||++|||++ |..||.....  .
T Consensus       173 ~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~--~  243 (314)
T cd05099         173 MKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEAL-------FDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPV--E  243 (314)
T ss_pred             EEEccccccccccccccccccccCCCCccccCHHHH-------ccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCH--H
Confidence            999999999765321      1  123469999964       33456789999999999999999 8889864321  1


Q ss_pred             HHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          545 KWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       545 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      .......... ..   +    ..   .....++.+++.+||+.+|++||++.++++.|+++...
T Consensus       244 ~~~~~~~~~~-~~---~----~~---~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~~~  296 (314)
T cd05099         244 ELFKLLREGH-RM---D----KP---SNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVLAA  296 (314)
T ss_pred             HHHHHHHcCC-CC---C----CC---CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHH
Confidence            1111111110 00   0    01   11223566788899999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=1.8e-34  Score=294.88  Aligned_cols=244  Identities=18%  Similarity=0.270  Sum_probs=186.1

Q ss_pred             hhccccccCcceEEEEEeCC-CcEEEEEEecccc--chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          337 SAELLGKGCVGATYKVVLDG-GDVVVVKRIRERK--KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      ..+.||+|+||.||+|.... +..+++|.+....  ..+.+..|+++++.++||||+++++++...+..++||||+++|+
T Consensus         9 i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~~~   88 (282)
T cd06643           9 IIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGA   88 (282)
T ss_pred             HHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCCCc
Confidence            34679999999999999654 6778888886542  33567788999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------  487 (640)
                      |..++....    .++++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++....      
T Consensus        89 l~~~~~~~~----~~l~~~~~~~~~~qi~~~L~~LH~---~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~  161 (282)
T cd06643          89 VDAVMLELE----RPLTEPQIRVVCKQTLEALNYLHE---NKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRD  161 (282)
T ss_pred             HHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCcccEEEccCCCEEEccccccccccccccccc
Confidence            999876432    258999999999999999999994   5699999999999999999999999999865432      


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      ...++..|+|||++....  .....++.++|||||||++|||++|+.||.....  ...+.......      .+....+
T Consensus       162 ~~~~~~~y~aPE~~~~~~--~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~--~~~~~~~~~~~------~~~~~~~  231 (282)
T cd06643         162 SFIGTPYWMAPEVVMCET--SKDRPYDYKADVWSLGITLIEMAQIEPPHHELNP--MRVLLKIAKSE------PPTLAQP  231 (282)
T ss_pred             cccccccccCHhhccccC--CCCCCCCccchhhhHHHHHHHHccCCCCccccCH--HHHHHHHhhcC------CCCCCCc
Confidence            234577899999764221  1234567899999999999999999999864321  11111111100      0000111


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..   ...++.+++..||+.+|.+||++.++++
T Consensus       232 ~~---~~~~~~~li~~~l~~~p~~Rp~~~~il~  261 (282)
T cd06643         232 SR---WSSEFKDFLKKCLEKNVDARWTTTQLLQ  261 (282)
T ss_pred             cc---cCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            11   1234667788899999999999988753

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=1e-34  Score=294.33  Aligned_cols=241  Identities=23%  Similarity=0.293  Sum_probs=183.7

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ...||+|+||.||+|+.. ++..|++|.+...  ...+.+.+|+.++++++|+||+++++++...+..++|+||+++++|
T Consensus        13 ~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L   92 (268)
T cd06624          13 RVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIFMEQVPGGSL   92 (268)
T ss_pred             eEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEEEecCCCCCH
Confidence            347999999999999954 5678999988755  2345788899999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC-CCCeEEccCCcccccCC------
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ-LGNACISDIGVHQLFHT------  487 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~-~~~~kl~DfGl~~~~~~------  487 (640)
                      .++++....  ....++..+..++.|++.||+|||+   .+|+||||||+||+++. ++.+||+|||++.....      
T Consensus        93 ~~~l~~~~~--~~~~~~~~~~~~~~qi~~al~~lH~---~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~  167 (268)
T cd06624          93 SALLRSKWG--PLKDNEQTIIFYTKQILEGLKYLHD---NQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTE  167 (268)
T ss_pred             HHHHHHhcc--cCCCcHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEcCCCCeEEEecchhheecccCCCccc
Confidence            999975432  1112778888999999999999994   56999999999999986 67999999999876432      


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcch-HHHHHHhhcccccccccchhhcc
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGI-VKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                      ...++..|+|||++..     ....++.++|||||||++|||++|+.||....... ..|.......       .+.  .
T Consensus       168 ~~~~~~~~~aPE~~~~-----~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~~~~~~~~~~-------~~~--~  233 (268)
T cd06624         168 TFTGTLQYMAPEVIDK-----GPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFKVGMFKI-------HPE--I  233 (268)
T ss_pred             cCCCCccccChhhhcc-----ccccCCchhhhHHHHHHHHHHHhCCCCCccccChhhhHhhhhhhcc-------CCC--C
Confidence            1234678999997522     12346789999999999999999999986432211 1111110000       000  1


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      +.   ....++.+++.+||+.+|++||++.+++.
T Consensus       234 ~~---~~~~~~~~li~~~l~~~p~~Rpt~~~ll~  264 (268)
T cd06624         234 PE---SLSAEAKNFILRCFEPDPDKRASAHDLLQ  264 (268)
T ss_pred             Cc---ccCHHHHHHHHHHcCCCchhCCCHHHHHh
Confidence            11   12234667788899999999999999875

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=7.9e-35  Score=295.20  Aligned_cols=242  Identities=25%  Similarity=0.394  Sum_probs=186.1

Q ss_pred             cccccCcceEEEEEeCC-------CcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          340 LLGKGCVGATYKVVLDG-------GDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~~-------~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .||+|+||.||+|+..+       +..+|+|.+....   ...++.+|+.+++.++||||+++++++...+..++||||+
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   81 (269)
T cd05044           2 FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMELM   81 (269)
T ss_pred             ccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEecc
Confidence            68999999999998643       2468999876542   3456788999999999999999999999989999999999


Q ss_pred             CCCCHHHhhccCCCC--CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC-----CeEEccCCcc
Q 006559          410 PHGSLHSLLHGSRGP--GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG-----NACISDIGVH  482 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~--~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~-----~~kl~DfGl~  482 (640)
                      ++|+|.+++......  ....+++..++.++.|++.||+|||+   .+++|+||||+||+++.++     .+|++|||++
T Consensus        82 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~  158 (269)
T cd05044          82 EGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQ---MHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLA  158 (269)
T ss_pred             CCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHh---CCcccCCCChheEEEecCCCCCCcceEECCcccc
Confidence            999999999753211  12347899999999999999999994   5599999999999999877     8999999998


Q ss_pred             cccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcc
Q 006559          483 QLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQD  553 (640)
Q Consensus       483 ~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~  553 (640)
                      +.....        ...+..|+|||++       ....++.++|||||||++|||+| |+.||.....  .+........
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~--~~~~~~~~~~  229 (269)
T cd05044         159 RDIYKSDYYRKEGEGLLPVRWMAPESL-------LDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNN--QEVLQHVTAG  229 (269)
T ss_pred             cccccccccccCcccCCCccccCHHHH-------ccCCcccchhHHHHHHHHHHHHHcCCCCCcccCH--HHHHHHHhcC
Confidence            754221        1225679999964       34557789999999999999998 9999864321  1111111111


Q ss_pred             cccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 006559          554 ESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIED  604 (640)
Q Consensus       554 ~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~  604 (640)
                      .        ......   .....+.+++.+||+.+|++||++.++.+.|++
T Consensus       230 ~--------~~~~~~---~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  269 (269)
T cd05044         230 G--------RLQKPE---NCPDKIYQLMTNCWAQDPSERPTFDRIQEILQN  269 (269)
T ss_pred             C--------ccCCcc---cchHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            0        000111   123456778889999999999999999998863

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=3.9e-35  Score=306.06  Aligned_cols=229  Identities=20%  Similarity=0.286  Sum_probs=177.3

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCC-cccceeEEEEcCCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHS-NIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~-niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      .+.||+|+||.||+|+.. +++.||||.+...     ...+.+..|.+++..++|+ +|+++++++...+..|+||||++
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~   84 (324)
T cd05587           5 LMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVN   84 (324)
T ss_pred             EEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEEcCCC
Confidence            467999999999999865 4678999998754     1234466788888888765 58889999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                      +|+|.+++....     .+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....   
T Consensus        85 ~g~L~~~~~~~~-----~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~  156 (324)
T cd05587          85 GGDLMYHIQQVG-----KFKEPHAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGK  156 (324)
T ss_pred             CCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCC
Confidence            999999987543     47889999999999999999994   5699999999999999999999999999875321   


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         ...++..|+|||++       ....++.++|||||||++|||+||+.||......  ...+.....         ..
T Consensus       157 ~~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~--~~~~~i~~~---------~~  218 (324)
T cd05587         157 TTRTFCGTPDYIAPEII-------AYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDED--ELFQSIMEH---------NV  218 (324)
T ss_pred             ceeeecCCccccChhhh-------cCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHH--HHHHHHHcC---------CC
Confidence               23468899999965       3345678999999999999999999999754321  111111110         00


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNM  595 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~  595 (640)
                      ..+...   ..++.+++.+|++.||++||+.
T Consensus       219 ~~~~~~---~~~~~~li~~~l~~~P~~R~~~  246 (324)
T cd05587         219 SYPKSL---SKEAVSICKGLLTKHPAKRLGC  246 (324)
T ss_pred             CCCCCC---CHHHHHHHHHHhhcCHHHcCCC
Confidence            011111   2245677788999999999986

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=3.6e-35  Score=318.07  Aligned_cols=258  Identities=18%  Similarity=0.337  Sum_probs=182.9

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcC--------CeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGK--------DELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--------~~~~lV~E  407 (640)
                      ..++||+|+||.||+|+. ..+..||||++....  ....+|+.+++.++|||||++++++...        ..+++|||
T Consensus        70 ~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~--~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l~lvmE  147 (440)
T PTZ00036         70 LGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP--QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLNVVME  147 (440)
T ss_pred             EeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc--chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceEEEEEEe
Confidence            357899999999999986 467899999886432  2345789999999999999999887432        24679999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC-CeEEccCCcccccC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG-NACISDIGVHQLFH  486 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~-~~kl~DfGl~~~~~  486 (640)
                      |+++ +|.+++..... ....+++.....++.|++.||+|||+   .+|+||||||+|||++.++ .+||+|||+++.+.
T Consensus       148 ~~~~-~l~~~~~~~~~-~~~~l~~~~~~~~~~qi~~gL~yLH~---~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~  222 (440)
T PTZ00036        148 FIPQ-TVHKYMKHYAR-NNHALPLFLVKLYSYQLCRALAYIHS---KFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLL  222 (440)
T ss_pred             cCCc-cHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCcCHHHEEEcCCCCceeeeccccchhcc
Confidence            9985 77776643211 12258889999999999999999995   4599999999999999664 79999999998653


Q ss_pred             C-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc--chHHHHHHhhcccc-ccc
Q 006559          487 T-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL--GIVKWVQMMGQDES-AWE  558 (640)
Q Consensus       487 ~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~--~~~~~~~~~~~~~~-~~~  558 (640)
                      .     ...++..|+|||++.      ....++.++|||||||++|||+||++||.+...  .+...++..+.... ...
T Consensus       223 ~~~~~~~~~~t~~y~aPE~~~------~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~~  296 (440)
T PTZ00036        223 AGQRSVSYICSRFYRAPELML------GATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLK  296 (440)
T ss_pred             CCCCcccCCCCcCccCHHHhc------CCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHH
Confidence            2     234578899999753      223577899999999999999999999975321  11222222111100 000


Q ss_pred             ccchhh-------ccChHHH-----HHHHHHHHHHHHccCCCCCCCCCHHHHH--HHHHHhhc
Q 006559          559 VFDFEL-------IMDKEME-----EEMRALLQVALLCLAPLPKDRPNMSIVH--RMIEDIRT  607 (640)
Q Consensus       559 ~~d~~~-------~~~~~~~-----~~~~~l~~l~~~Cl~~~P~~RPs~~~v~--~~L~~i~~  607 (640)
                      ...+..       .......     ....++.+++.+||..||++|||+.|++  ..++++..
T Consensus       297 ~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~hp~f~~~~~  359 (440)
T PTZ00036        297 EMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALADPFFDDLRD  359 (440)
T ss_pred             HhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCChhHHhhhc
Confidence            000000       0000111     1224677888999999999999999987  45555543

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=1.5e-34  Score=298.85  Aligned_cols=243  Identities=22%  Similarity=0.341  Sum_probs=187.6

Q ss_pred             hccccccCcceEEEEEeC-CCc----EEEEEEeccccc---hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVLD-GGD----VVVVKRIRERKK---KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~----~vavK~l~~~~~---~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .+.||+|+||.||+|... ++.    .||+|.+.....   ..++.+|+.++++++||||++++|+|... ..++|+||+
T Consensus        12 ~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~~v~e~~   90 (303)
T cd05110          12 VKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQLVTQLM   90 (303)
T ss_pred             ccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-Cceeeehhc
Confidence            467999999999999853 343    478888875432   33677889999999999999999998754 577999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-  488 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-  488 (640)
                      ++|+|.+++....    ..+++..+..++.|++.||+|||+   .+|+||||||+||++++++.+||+|||+++..... 
T Consensus        91 ~~g~l~~~~~~~~----~~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~  163 (303)
T cd05110          91 PHGCLLDYVHEHK----DNIGSQLLLNWCVQIAKGMMYLEE---RRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDE  163 (303)
T ss_pred             CCCCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHhh---cCeeccccccceeeecCCCceEEccccccccccCcc
Confidence            9999999987543    247889999999999999999994   56999999999999999999999999999865321 


Q ss_pred             -------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCc-chHHHHHHhhcccccccc
Q 006559          489 -------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGEL-GIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       489 -------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~-~~~~~~~~~~~~~~~~~~  559 (640)
                             ...+..|+|||.+       ....++.++|||||||++|||+| |+.||.+... ....+++   .....   
T Consensus       164 ~~~~~~~~~~~~~y~~PE~~-------~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~~~~~~~~---~~~~~---  230 (303)
T cd05110         164 KEYNADGGKMPIKWMALECI-------HYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLE---KGERL---  230 (303)
T ss_pred             cccccCCCccccccCCHHHh-------ccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH---CCCCC---
Confidence                   1224579999954       34557789999999999999998 8999864321 1222221   11100   


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG  609 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~  609 (640)
                           ...   .....++.+++..||..+|++||+|.++++.|+++..+.
T Consensus       231 -----~~~---~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~~~  272 (303)
T cd05110         231 -----PQP---PICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRMARDP  272 (303)
T ss_pred             -----CCC---CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhch
Confidence                 000   112235677888999999999999999999999986553

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=4.1e-35  Score=310.90  Aligned_cols=190  Identities=19%  Similarity=0.295  Sum_probs=160.9

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+++.. +++.+|+|.+...     ...+.+.+|+.+++.++||||+++++++..++..|+||||+++
T Consensus        48 ~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~g  127 (370)
T cd05621          48 VKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYMVMEYMPG  127 (370)
T ss_pred             EEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEcCCCC
Confidence            467999999999999965 5788999998643     1234567889999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++...      .+++.....++.|++.||+|||+   .+|+||||||+|||+++++.+||+|||+++....    
T Consensus       128 g~L~~~l~~~------~~~~~~~~~~~~qil~aL~~LH~---~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~  198 (370)
T cd05621         128 GDLVNLMSNY------DVPEKWAKFYTAEVVLALDAIHS---MGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMV  198 (370)
T ss_pred             CcHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHEEECCCCCEEEEecccceecccCCce
Confidence            9999999643      36778888999999999999994   5699999999999999999999999999886532    


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG  539 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~  539 (640)
                         ...+|..|+|||++....   ....++.++||||+||++|||+||+.||...
T Consensus       199 ~~~~~~gt~~Y~aPE~~~~~~---~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~  250 (370)
T cd05621         199 RCDTAVGTPDYISPEVLKSQG---GDGYYGRECDWWSVGVFLFEMLVGDTPFYAD  250 (370)
T ss_pred             ecccCCCCcccCCHHHHhccC---CCCCCCcccCEEeehHHHHHHHhCCCCCCCC
Confidence               234688999999864321   1123678999999999999999999999754

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.8e-34  Score=293.00  Aligned_cols=243  Identities=22%  Similarity=0.353  Sum_probs=190.1

Q ss_pred             hccccccCcceEEEEEeCC-Cc----EEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVLDG-GD----VVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-~~----~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .+.||+|+||.||+|.... |.    .+|+|.+....   ...++.+|+..+++++||||+++++++.. ...++||||+
T Consensus        12 ~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~   90 (279)
T cd05057          12 IKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQVQLITQLM   90 (279)
T ss_pred             cceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CceEEEEecC
Confidence            5689999999999998643 33    58899887653   23567789999999999999999999987 7899999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF  489 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~  489 (640)
                      ++|+|.+++.....    .+++.....++.|++.||+|||+   .+|+||||||+||++++++.+||+|||+++......
T Consensus        91 ~~g~L~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~LH~---~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~  163 (279)
T cd05057          91 PLGCLLDYVRNHKD----NIGSQYLLNWCVQIAKGMSYLEE---KRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDE  163 (279)
T ss_pred             CCCcHHHHHHhccC----CCCHHHHHHHHHHHHHHHHHHHh---CCEEecccCcceEEEcCCCeEEECCCcccccccCcc
Confidence            99999999976432    48899999999999999999995   569999999999999999999999999987654221


Q ss_pred             --------cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhccccccccc
Q 006559          490 --------FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVF  560 (640)
Q Consensus       490 --------~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  560 (640)
                              ..+..|+|||..       ....++.++|||||||++||++| |+.||.....  .++.+.......     
T Consensus       164 ~~~~~~~~~~~~~y~~PE~~-------~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~~~~~-----  229 (279)
T cd05057         164 KEYHAEGGKVPIKWMALESI-------LHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPA--VEIPDLLEKGER-----  229 (279)
T ss_pred             cceecCCCcccccccCHHHh-------hcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCH--HHHHHHHhCCCC-----
Confidence                    113469999953       34556789999999999999999 9999975322  222222211100     


Q ss_pred             chhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          561 DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       561 d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                         ...+.   .+..++.+++.+||..+|++||++.++++.|.++..+
T Consensus       230 ---~~~~~---~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~~~  271 (279)
T cd05057         230 ---LPQPP---ICTIDVYMVLVKCWMIDAESRPTFKELINEFSKMARD  271 (279)
T ss_pred             ---CCCCC---CCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhC
Confidence               00011   1123466778899999999999999999999998654

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-34  Score=292.47  Aligned_cols=238  Identities=21%  Similarity=0.309  Sum_probs=185.1

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEecccc-------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      ..+.||+|+||.||++.. .++..||+|.+....       ..+.+.+|++++++++||||+++++++...+..++||||
T Consensus         6 ~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   85 (263)
T cd06625           6 RGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSIFMEY   85 (263)
T ss_pred             ccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEEEEEE
Confidence            357899999999999985 468899999886431       124577899999999999999999999999999999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-  487 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-  487 (640)
                      +++++|.+++....     .+++.....++.|++.||.|||+   .+|+||||+|+||++++++.++|+|||+++.... 
T Consensus        86 ~~~~~l~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~  157 (263)
T cd06625          86 MPGGSVKDQLKAYG-----ALTETVTRKYTRQILEGVEYLHS---NMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTI  157 (263)
T ss_pred             CCCCcHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeecccceecccc
Confidence            99999999987543     47888899999999999999994   5699999999999999999999999999875432 


Q ss_pred             --------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccc
Q 006559          488 --------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       488 --------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  559 (640)
                              ...++..|+|||++.       ...++.++|||||||++|||++|+.||...+..... .+.... ...   
T Consensus       158 ~~~~~~~~~~~~~~~y~aPE~~~-------~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~-~~~~~~-~~~---  225 (263)
T cd06625         158 CSSGTGMKSVTGTPYWMSPEVIS-------GEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAAI-FKIATQ-PTN---  225 (263)
T ss_pred             ccccccccCCCcCccccCcceec-------cCCCCchhhhHHHHHHHHHHHhCCCCccccchHHHH-HHHhcc-CCC---
Confidence                    123456899999753       344778999999999999999999999653221111 111110 000   


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                          ...+.   .....+.+++.+||..+|++||++.++++.
T Consensus       226 ----~~~~~---~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  260 (263)
T cd06625         226 ----PQLPS---HVSPDARNFLRRTFVENAKKRPSAEELLRH  260 (263)
T ss_pred             ----CCCCc---cCCHHHHHHHHHHhhcCcccCCCHHHHhhC
Confidence                00111   122346677788999999999999998763

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=1.2e-34  Score=295.30  Aligned_cols=235  Identities=21%  Similarity=0.359  Sum_probs=185.5

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ..+.||+|+||.||+|... ++..||+|.+....   ..+.+..|++++++++||||+++++++...+..++||||++++
T Consensus         8 ~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   87 (277)
T cd06642           8 KLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLGGG   87 (277)
T ss_pred             HHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEccCCC
Confidence            3467999999999999854 57789999887442   2346788999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.+++...      .+++..+..++.|+++|+.|||+   .+++|+||+|+||++++++.+|++|||+++.....    
T Consensus        88 ~L~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH~---~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~  158 (277)
T cd06642          88 SALDLLKPG------PLEETYIATILREILKGLDYLHS---ERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKR  158 (277)
T ss_pred             cHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHhc---CCeeccCCChheEEEeCCCCEEEccccccccccCcchhh
Confidence            999998642      47889999999999999999994   56999999999999999999999999998765432    


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                        ..++..|+|||..       ....++.++|||||||++|||+||+.|+.......  +........      .+.+  
T Consensus       159 ~~~~~~~~y~aPE~~-------~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~--~~~~~~~~~------~~~~--  221 (277)
T cd06642         159 NTFVGTPFWMAPEVI-------KQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMR--VLFLIPKNS------PPTL--  221 (277)
T ss_pred             hcccCcccccCHHHh-------CcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhh--HHhhhhcCC------CCCC--
Confidence              2346689999964       34456789999999999999999999986422111  111111000      0000  


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .   ......+.+++.+||+.+|++||+|.++++
T Consensus       222 ~---~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  252 (277)
T cd06642         222 E---GQYSKPFKEFVEACLNKDPRFRPTAKELLK  252 (277)
T ss_pred             C---cccCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence            0   122345677888899999999999999987

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=9e-35  Score=297.49  Aligned_cols=245  Identities=23%  Similarity=0.332  Sum_probs=190.9

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ..+.||+|+||+||++... ++..||+|.+...   ...+.+..|+++++.++||||+++++++...+..++||||+++|
T Consensus         9 ~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   88 (284)
T cd06620           9 TISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEFMDCG   88 (284)
T ss_pred             HHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEecCCCC
Confidence            3567999999999999854 6888999987644   23466888999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----C
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----P  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----~  488 (640)
                      +|.+++....     ++++.....++.+++.||.|||+.  .+++||||||+||++++++.++|+|||++.....    .
T Consensus        89 ~L~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~LH~~--~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~~~~  161 (284)
T cd06620          89 SLDRIYKKGG-----PIPVEILGKIAVAVVEGLTYLYNV--HRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIADT  161 (284)
T ss_pred             CHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHHHh--cCeeccCCCHHHEEECCCCcEEEccCCcccchhhhccCc
Confidence            9999987543     578999999999999999999952  3599999999999999999999999999865422    2


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc---------hHHHHHHhhcccccccc
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG---------IVKWVQMMGQDESAWEV  559 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~---------~~~~~~~~~~~~~~~~~  559 (640)
                      ..++..|+|||++       ....++.++|||||||++|||+||+.||......         ...+.+......     
T Consensus       162 ~~~~~~~~aPE~~-------~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  229 (284)
T cd06620         162 FVGTSTYMSPERI-------QGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEP-----  229 (284)
T ss_pred             cccCcccCCHHHH-------ccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhcc-----
Confidence            3457889999964       2346678999999999999999999999743211         111221111110     


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                       .+.+  .  ..+...++.+++.+||+.||++||++.|+.++.--+
T Consensus       230 -~~~~--~--~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~~~~  270 (284)
T cd06620         230 -PPRL--P--SSDFPEDLRDFVDACLLKDPTERPTPQQLCAMPPFI  270 (284)
T ss_pred             -CCCC--C--chhcCHHHHHHHHHHhcCCcccCcCHHHHhcCcccc
Confidence             0000  0  011334577788889999999999999998864333

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=1.5e-34  Score=290.73  Aligned_cols=238  Identities=19%  Similarity=0.310  Sum_probs=186.3

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||.||+++.. ++..+|+|.++..   ...+.+..|+.+++.++|+||+++.+++...+..|+||||+++|+
T Consensus         5 ~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   84 (255)
T cd08219           5 LRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYCDGGD   84 (255)
T ss_pred             EEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeCCCCc
Confidence            467999999999999854 5788999988643   233567788999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-----
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-----  488 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-----  488 (640)
                      |.+++.....   ..++......++.|++.||.|||   ..+|+|+||||+||++++++.++++|||+++.....     
T Consensus        85 l~~~~~~~~~---~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~  158 (255)
T cd08219          85 LMQKIKLQRG---KLFPEDTILQWFVQMCLGVQHIH---EKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYAC  158 (255)
T ss_pred             HHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCcceEEECCCCcEEEcccCcceeecccccccc
Confidence            9998865332   24788899999999999999999   456999999999999999999999999998765432     


Q ss_pred             -ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          489 -FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       489 -~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                       ..++..|+|||++       ....++.++||||||+++|||++|+.||........  ........ ...       .+
T Consensus       159 ~~~~~~~~~aPE~~-------~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~--~~~~~~~~-~~~-------~~  221 (255)
T cd08219         159 TYVGTPYYVPPEIW-------ENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKNL--ILKVCQGS-YKP-------LP  221 (255)
T ss_pred             cccCCccccCHHHH-------ccCCcCchhhhhhhchhheehhhccCCCCCCCHHHH--HHHHhcCC-CCC-------CC
Confidence             3456779999964       334577899999999999999999999975432111  11111110 000       01


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                      .   .....+.+++.+||+.||++||++.+++..
T Consensus       222 ~---~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         222 S---HYSYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             c---ccCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence            1   112346677888999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=2e-34  Score=294.86  Aligned_cols=251  Identities=21%  Similarity=0.325  Sum_probs=185.1

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|+.. ++..||+|.++..    ...+.+.+|+.++++++||||+++++++..++..++||||++ +
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~-~   83 (285)
T cd07861           5 IEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEFLS-M   83 (285)
T ss_pred             eeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEecCC-C
Confidence            457999999999999964 6889999998643    123567789999999999999999999999999999999997 6


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.+++.....  ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++.....    
T Consensus        84 ~l~~~~~~~~~--~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~  158 (285)
T cd07861          84 DLKKYLDSLPK--GQYMDAELVKSYLYQILQGILFCHS---RRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRVY  158 (285)
T ss_pred             CHHHHHhcCCC--CCcCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCCHHHEEEcCCCcEEECcccceeecCCCcccc
Confidence            89888865331  2358899999999999999999994   56999999999999999999999999998765322    


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcch--HHHHHHhhcc-ccccc----c
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGI--VKWVQMMGQD-ESAWE----V  559 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~--~~~~~~~~~~-~~~~~----~  559 (640)
                        ...+..|+|||++.+      ...++.++|||||||++|||+||+.||.......  ....+..... +..+.    .
T Consensus       159 ~~~~~~~~y~aPE~~~~------~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (285)
T cd07861         159 THEVVTLWYRAPEVLLG------SPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSL  232 (285)
T ss_pred             cCCcccccccChHHhcC------CCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhh
Confidence              234678999996532      2345788999999999999999999997532211  1111111100 00000    0


Q ss_pred             cchhhccC--------hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 FDFELIMD--------KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 ~d~~~~~~--------~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .+.....+        ........++.+++.+||+.||++|||+.+|++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~  281 (285)
T cd07861         233 PDYKNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALN  281 (285)
T ss_pred             HHHHhhccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence            00000000        000112245667888999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=1.5e-34  Score=292.82  Aligned_cols=243  Identities=20%  Similarity=0.315  Sum_probs=185.8

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEecccc--chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERK--KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      ..+.||+|+||.||+|+. .++..||+|.++...  ....+.+|+.+++.++||||+++++++...+..++||||+++++
T Consensus        13 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~   92 (267)
T cd06645          13 LIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFCGGGS   92 (267)
T ss_pred             HHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEeccCCCc
Confidence            456799999999999985 468889999987542  23456778999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------  487 (640)
                      |.+++....     .+++.....++.|++.||.|||+   .+|+|+||||+||+++.++.+||+|||++.....      
T Consensus        93 L~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~  164 (267)
T cd06645          93 LQDIYHVTG-----PLSESQIAYVSRETLQGLYYLHS---KGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRK  164 (267)
T ss_pred             HHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEECcceeeeEccCcccccc
Confidence            999987543     57889999999999999999995   4599999999999999999999999999865432      


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      ...++..|+|||++...    ....++.++|||||||++|||++|+.||.........+..  .......    +...  
T Consensus       165 ~~~~~~~y~aPE~~~~~----~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~~~~~--~~~~~~~----~~~~--  232 (267)
T cd06645         165 SFIGTPYWMAPEVAAVE----RKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLM--TKSNFQP----PKLK--  232 (267)
T ss_pred             cccCcccccChhhhccc----cCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhhHHhh--hccCCCC----Cccc--
Confidence            23457789999975211    2344678999999999999999999998643211111110  0000000    0000  


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       ........+.+++.+|++.+|++||++.+++.
T Consensus       233 -~~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~  264 (267)
T cd06645         233 -DKMKWSNSFHHFVKMALTKNPKKRPTAEKLLQ  264 (267)
T ss_pred             -ccCCCCHHHHHHHHHHccCCchhCcCHHHHhc
Confidence             00011224667888899999999999998864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=7.4e-35  Score=297.36  Aligned_cols=235  Identities=20%  Similarity=0.318  Sum_probs=182.4

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .++||+|+||.||+|+. .++..||+|.+...   ...+++..|++++++++||||+++++++...+..++||||+++|+
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   85 (279)
T cd06619           6 QEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFMDGGS   85 (279)
T ss_pred             eeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecCCCCC
Confidence            46799999999999985 56788999998644   223567889999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----Cc
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----PF  489 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----~~  489 (640)
                      |..+.         .+++.....++.|++.||+|||   ..+|+|+||||+|||++.++.+||+|||++.....    ..
T Consensus        86 l~~~~---------~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~~~~~  153 (279)
T cd06619          86 LDVYR---------KIPEHVLGRIAVAVVKGLTYLW---SLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIAKTY  153 (279)
T ss_pred             hHHhh---------cCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCCHHHEEECCCCCEEEeeCCcceecccccccCC
Confidence            97552         3577888899999999999999   45699999999999999999999999999876533    23


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-----hHHHHHHhhcccccccccchhh
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-----IVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                      .++..|+|||++       ....++.++|||||||++|||+||+.||......     ...+.+......      ....
T Consensus       154 ~~~~~y~aPE~~-------~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~------~~~~  220 (279)
T cd06619         154 VGTNAYMAPERI-------SGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDED------PPVL  220 (279)
T ss_pred             CCChhhcCceee-------cCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccC------CCCC
Confidence            457789999964       3345678999999999999999999998632110     111111111100      0000


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                      ..    .....++.+++.+|++.+|++||++.|+++.
T Consensus       221 ~~----~~~~~~~~~li~~~l~~~P~~Rp~~~eil~~  253 (279)
T cd06619         221 PV----GQFSEKFVHFITQCMRKQPKERPAPENLMDH  253 (279)
T ss_pred             CC----CcCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence            00    1112346778888999999999999998753

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=9e-35  Score=294.21  Aligned_cols=237  Identities=21%  Similarity=0.345  Sum_probs=184.5

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEecccc--------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERK--------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~--------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .+.||+|+||.||+|...+++.+|||.++...        ....+.+|++++++++|+||+++.+++...+..++||||+
T Consensus         5 ~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   84 (265)
T cd06631           5 GEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFMEFV   84 (265)
T ss_pred             cceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEEecC
Confidence            46799999999999998888999999886431        1234678899999999999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--  487 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--  487 (640)
                      ++|+|.+++....     ++++..+..++.|++.||+|||+   .+|+|+||+|+||++++++.+||+|||+++....  
T Consensus        85 ~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~  156 (265)
T cd06631          85 PGGSISSILNRFG-----PLPEPVFCKYTKQILDGVAYLHN---NCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVG  156 (265)
T ss_pred             CCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcCHHhEEECCCCeEEeccchhhHhhhhcc
Confidence            9999999997543     47888999999999999999995   4599999999999999999999999999875421  


Q ss_pred             ----------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccc
Q 006559          488 ----------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAW  557 (640)
Q Consensus       488 ----------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  557 (640)
                                ...++..|+|||+.       ....++.++|||||||++|||+||+.||...+... .......... . 
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~pe~~-------~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~-~~~~~~~~~~-~-  226 (265)
T cd06631         157 LHGTHSNMLKSMHGTPYWMAPEVI-------NESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLA-AMFYIGAHRG-L-  226 (265)
T ss_pred             ccccccccccccCCCccccChhhh-------cCCCCcchhhHHHHHHHHHHHHhCCCccccCChHH-HHHHhhhccC-C-
Confidence                      12346789999964       34456789999999999999999999997432111 1111000000 0 


Q ss_pred             cccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       558 ~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                         .+..  +.   ....++.+++.+||+.+|++||++.++++
T Consensus       227 ---~~~~--~~---~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~  261 (265)
T cd06631         227 ---MPRL--PD---SFSAAAIDFVTSCLTRDQHERPSALQLLR  261 (265)
T ss_pred             ---CCCC--CC---CCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence               0001  11   12234667788899999999999998864

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=2.1e-34  Score=296.06  Aligned_cols=243  Identities=16%  Similarity=0.273  Sum_probs=186.6

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc--chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK--KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      .+.||+|+||.||+|+.. ++..+++|.+....  ..+.+.+|+.++++++||||+++++++......++||||+++++|
T Consensus        17 ~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l   96 (292)
T cd06644          17 IGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFCPGGAV   96 (292)
T ss_pred             hheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecCCCCcH
Confidence            567999999999999965 47889999987542  345677899999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------C
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------P  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------~  488 (640)
                      ..++....    ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||++.....      .
T Consensus        97 ~~~~~~~~----~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~  169 (292)
T cd06644          97 DAIMLELD----RGLTEPQIQVICRQMLEALQYLHS---MKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRDS  169 (292)
T ss_pred             HHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHhc---CCeeecCCCcceEEEcCCCCEEEccCccceeccccccccce
Confidence            98876432    248899999999999999999994   5699999999999999999999999999765432      1


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ...+..|+|||++....  .....++.++|||||||++|||+||+.||.....  ...........      .+..... 
T Consensus       170 ~~~~~~y~aPE~~~~~~--~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~--~~~~~~~~~~~------~~~~~~~-  238 (292)
T cd06644         170 FIGTPYWMAPEVVMCET--MKDTPYDYKADIWSLGITLIEMAQIEPPHHELNP--MRVLLKIAKSE------PPTLSQP-  238 (292)
T ss_pred             ecCCccccCceeecccc--ccCCCCCchhhhHhHHHHHHHHhcCCCCCccccH--HHHHHHHhcCC------CccCCCC-
Confidence            23467899999764321  1234467899999999999999999999865321  11111111110      0011111 


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                        .....++.+++.+||+.+|++||++.++++
T Consensus       239 --~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  268 (292)
T cd06644         239 --SKWSMEFRDFLKTALDKHPETRPSAAQLLE  268 (292)
T ss_pred             --cccCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence              112234667888899999999999998864

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=1.5e-34  Score=326.65  Aligned_cols=249  Identities=18%  Similarity=0.296  Sum_probs=187.3

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEc--CCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNG--KDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~--~~~~~lV~Ey~~  410 (640)
                      .+.||+|+||.||+++.. .+..||+|.+...    .....+..|+.++++++|||||+++++|..  ...+||||||++
T Consensus        18 l~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~lyIVMEY~~   97 (1021)
T PTZ00266         18 IKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKLYILMEFCD   97 (1021)
T ss_pred             EEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEEEEEEeCCC
Confidence            567999999999999964 4678899988643    224567889999999999999999998864  357999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCC----CCceecCCCCCCeEECC----------------
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNK----AHLFHGHLSSSNIVVDQ----------------  470 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~----~~ivHrdlk~~NILl~~----------------  470 (640)
                      +|+|.++|..... ....+++..++.|+.||+.||+|||....    .+||||||||+||||+.                
T Consensus        98 gGSL~~lL~k~~~-~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~n  176 (1021)
T PTZ00266         98 AGDLSRNIQKCYK-MFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLN  176 (1021)
T ss_pred             CCcHHHHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccccccccC
Confidence            9999999875321 11258999999999999999999996431    45999999999999964                


Q ss_pred             -CCCeEEccCCcccccCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchH
Q 006559          471 -LGNACISDIGVHQLFHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIV  544 (640)
Q Consensus       471 -~~~~kl~DfGl~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~  544 (640)
                       ...+||+|||+++....     ...++..|+|||++..     ....++.++|||||||+||||+||+.||.... ...
T Consensus       177 g~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~g-----e~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~-~~~  250 (1021)
T PTZ00266        177 GRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLH-----ETKSYDDKSDMWALGCIIYELCSGKTPFHKAN-NFS  250 (1021)
T ss_pred             CCCceEEccCCccccccccccccccCCCccccCHHHHhc-----cCCCCCchhHHHHHHHHHHHHHHCCCCCCcCC-cHH
Confidence             23589999999886542     2356889999997632     22456789999999999999999999997432 222


Q ss_pred             HHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHH--HHHHHh
Q 006559          545 KWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVH--RMIEDI  605 (640)
Q Consensus       545 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~--~~L~~i  605 (640)
                      ..+..+....        .+..    .....++.+++..||+.+|++||++.+++  ..+..+
T Consensus       251 qli~~lk~~p--------~lpi----~~~S~eL~dLI~~~L~~dPeeRPSa~QlL~h~~ik~i  301 (1021)
T PTZ00266        251 QLISELKRGP--------DLPI----KGKSKELNILIKNLLNLSAKERPSALQCLGYQIIKNV  301 (1021)
T ss_pred             HHHHHHhcCC--------CCCc----CCCCHHHHHHHHHHhcCChhHCcCHHHHhccHHHhhc
Confidence            2222211110        0100    01123567788889999999999999997  445444

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=1.6e-34  Score=297.58  Aligned_cols=236  Identities=21%  Similarity=0.314  Sum_probs=185.0

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      .+.||+|+||.||+++. .++..||+|.+...  ...+.+.+|+.+++.++|+||+++++++...+..++||||+++++|
T Consensus        24 ~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L  103 (297)
T cd06656          24 FEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL  103 (297)
T ss_pred             eeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeecccCCCCH
Confidence            46799999999999995 57889999998754  2345577889999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------C
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------P  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------~  488 (640)
                      .+++...      .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||++.....      .
T Consensus       104 ~~~~~~~------~~~~~~~~~~~~~l~~~L~~LH~---~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~  174 (297)
T cd06656         104 TDVVTET------CMDEGQIAAVCRECLQALDFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST  174 (297)
T ss_pred             HHHHHhC------CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEECcCccceEccCCccCcCc
Confidence            9998643      47888999999999999999994   5699999999999999999999999999876432      2


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..++..|+|||..       ....++.++|||||||++|||+||+.||........  .......      ..+..... 
T Consensus       175 ~~~~~~y~aPE~~-------~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~--~~~~~~~------~~~~~~~~-  238 (297)
T cd06656         175 MVGTPYWMAPEVV-------TRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA--LYLIATN------GTPELQNP-  238 (297)
T ss_pred             ccCCccccCHHHH-------cCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchh--eeeeccC------CCCCCCCc-
Confidence            2456789999964       345567899999999999999999999964321100  0000000      00000011 


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                        ......+.+++.+||+.+|++||++.++++
T Consensus       239 --~~~~~~~~~li~~~l~~~p~~Rps~~~il~  268 (297)
T cd06656         239 --ERLSAVFRDFLNRCLEMDVDRRGSAKELLQ  268 (297)
T ss_pred             --cccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence              112234567788899999999999999987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=2.5e-34  Score=304.42  Aligned_cols=244  Identities=21%  Similarity=0.305  Sum_probs=180.1

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCC------eEEEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKD------ELFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~------~~~lV~  406 (640)
                      .+.||+|+||.||+++. ..|..||||++...    .....+.+|+.+++.++||||+++++++...+      ..|+||
T Consensus        26 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~  105 (359)
T cd07876          26 LKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQDVYLVM  105 (359)
T ss_pred             EEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccceeEEEE
Confidence            56899999999999985 45889999998643    23455678899999999999999999986543      579999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||+++ +|.+.++.       .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++...
T Consensus       106 e~~~~-~l~~~~~~-------~~~~~~~~~~~~qi~~~L~~LH~---~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~  174 (359)
T cd07876         106 ELMDA-NLCQVIHM-------ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAC  174 (359)
T ss_pred             eCCCc-CHHHHHhc-------cCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEEecCCCccccc
Confidence            99975 56666642       36788888999999999999994   569999999999999999999999999987653


Q ss_pred             C-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccc-ccc-
Q 006559          487 T-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESA-WEV-  559 (640)
Q Consensus       487 ~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~-~~~-  559 (640)
                      .     ...++..|+|||++       ....++.++|||||||++|||+||+.||...+. ...|.......... ... 
T Consensus       175 ~~~~~~~~~~t~~y~aPE~~-------~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~-~~~~~~~~~~~~~~~~~~~  246 (359)
T cd07876         175 TNFMMTPYVVTRYYRAPEVI-------LGMGYKENVDIWSVGCIMGELVKGSVIFQGTDH-IDQWNKVIEQLGTPSAEFM  246 (359)
T ss_pred             cCccCCCCcccCCCCCchhc-------cCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHhcCCCcHHHH
Confidence            2     23457889999965       334577899999999999999999999975321 22222111110000 000 


Q ss_pred             ----------cc--h------------hhccCh---HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 ----------FD--F------------ELIMDK---EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 ----------~d--~------------~~~~~~---~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                                ..  +            ....+.   .......++.+++.+|++.||++|||+.|+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~  314 (359)
T cd07876         247 NRLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALR  314 (359)
T ss_pred             HHHHHHHHHHHhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhc
Confidence                      00  0            000000   00011235678888999999999999999976

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.5e-35  Score=295.45  Aligned_cols=237  Identities=21%  Similarity=0.332  Sum_probs=195.6

Q ss_pred             hhccccccCcceEEEEE-eCCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          337 SAELLGKGCVGATYKVV-LDGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ..+.||+|.|++|-+++ .-.|..||||++.+.+    ....+.+|++.|+-++|||||+||++......+|||+|.-.+
T Consensus        22 LekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLELGD~  101 (864)
T KOG4717|consen   22 LEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILELGDG  101 (864)
T ss_pred             hhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEEecCC
Confidence            35679999999999988 4579999999997652    345678899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE-CCCCCeEEccCCcccccCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV-DQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl-~~~~~~kl~DfGl~~~~~~---  487 (640)
                      |+|++|+-+...    -+.+....+++.||..|+.|+|   +.++|||||||+||.+ ..-|-+|+.|||++..+.+   
T Consensus       102 GDl~DyImKHe~----Gl~E~La~kYF~QI~~AI~YCH---qLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~k  174 (864)
T KOG4717|consen  102 GDLFDYIMKHEE----GLNEDLAKKYFAQIVHAISYCH---QLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKK  174 (864)
T ss_pred             chHHHHHHhhhc----cccHHHHHHHHHHHHHHHHHHh---hhhhhcccCCcceeEEeeecCceEeeeccccccCCCcch
Confidence            999999976542    3778888999999999999999   6679999999999976 5678999999999987764   


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                        ..+++..|-|||++.+..+.      .+++||||+||+||-|+.|+.||++...           .+....|.|-...
T Consensus       175 L~TsCGSLAYSAPEILLGDsYD------APAVDiWSLGVILyMLVCGq~PFqeAND-----------SETLTmImDCKYt  237 (864)
T KOG4717|consen  175 LTTSCGSLAYSAPEILLGDSYD------APAVDIWSLGVILYMLVCGQPPFQEAND-----------SETLTMIMDCKYT  237 (864)
T ss_pred             hhcccchhhccCchhhhcCccC------CcchhhhHHHHHHHHHHhCCCccccccc-----------hhhhhhhhccccc
Confidence              45778899999998766433      2689999999999999999999985321           2233445666666


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .+.....+.++   ++..|+..||++|.+..||+.
T Consensus       238 vPshvS~eCrd---LI~sMLvRdPkkRAslEeI~s  269 (864)
T KOG4717|consen  238 VPSHVSKECRD---LIQSMLVRDPKKRASLEEIVS  269 (864)
T ss_pred             CchhhhHHHHH---HHHHHHhcCchhhccHHHHhc
Confidence            66666665555   555699999999999888864

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=4.3e-34  Score=292.68  Aligned_cols=248  Identities=21%  Similarity=0.307  Sum_probs=189.6

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ..+.||+|+||.||+++.. .+..||+|.++...   ....+.+|+.++++++|+||+++++++...+..++||||++++
T Consensus         5 ~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (286)
T cd06622           5 VLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYMDAG   84 (286)
T ss_pred             hhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEeecCCC
Confidence            3567999999999999975 68899999887542   2356778999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----C
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----P  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----~  488 (640)
                      +|.+++....  ....+++..+..++.|++.||.|||+  ..+|+||||||+||+++.++.+||+|||++..+..    .
T Consensus        85 ~l~~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~LH~--~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~  160 (286)
T cd06622          85 SLDKLYAGGV--ATEGIPEDVLRRITYAVVKGLKFLKE--EHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLAKT  160 (286)
T ss_pred             CHHHHHHhcc--ccCCCCHHHHHHHHHHHHHHHHHHHh--cCCEeeCCCCHHHEEECCCCCEEEeecCCcccccCCcccc
Confidence            9999987532  12258999999999999999999995  23699999999999999999999999999876532    2


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchH-HHHHHhhcccccccccchhhccC
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIV-KWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      ..++..|+|||++...... ....++.++|||||||++|||+||+.||........ ......... ..     +.  ..
T Consensus       161 ~~~~~~y~aPE~~~~~~~~-~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~-~~-----~~--~~  231 (286)
T cd06622         161 NIGCQSYMAPERIKSGGPN-QNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANIFAQLSAIVDG-DP-----PT--LP  231 (286)
T ss_pred             CCCccCccCcchhcCCCCC-ccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhhHHHHHHHHhhc-CC-----CC--CC
Confidence            2346689999976433211 234567899999999999999999999964322111 111111000 00     00  11


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                         .....++.+++.+||+.+|++||++.+++.
T Consensus       232 ---~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  261 (286)
T cd06622         232 ---SGYSDDAQDFVAKCLNKIPNRRPTYAQLLE  261 (286)
T ss_pred             ---cccCHHHHHHHHHHcccCcccCCCHHHHhc
Confidence               123345667888899999999999999876

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=3.6e-34  Score=293.01  Aligned_cols=249  Identities=22%  Similarity=0.323  Sum_probs=186.5

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|+.. +++.||+|++....    ..+.+.+|+.++++++|+||+++++++......++||||++++
T Consensus         6 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~   85 (286)
T cd07847           6 LSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEYCDHT   85 (286)
T ss_pred             eeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEeccCcc
Confidence            457999999999999975 58899999886442    2355778999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      .|..++....     .+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||+|||++......    
T Consensus        86 ~l~~~~~~~~-----~~~~~~~~~~~~ql~~~l~~LH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~  157 (286)
T cd07847          86 VLNELEKNPR-----GVPEHLIKKIIWQTLQAVNFCHK---HNCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDDY  157 (286)
T ss_pred             HHHHHHhCCC-----CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCChhhEEEcCCCcEEECccccceecCCCcccc
Confidence            8888775432     48899999999999999999995   56999999999999999999999999998865432    


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcch-HHH-HHHhhccc-ccccc----
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGI-VKW-VQMMGQDE-SAWEV----  559 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~-~~~-~~~~~~~~-~~~~~----  559 (640)
                        ...+..|+|||++.+      ...++.++|||||||++|||+||+.||.+..... ... .+...... .....    
T Consensus       158 ~~~~~~~~~~aPE~~~~------~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (286)
T cd07847         158 TDYVATRWYRAPELLVG------DTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTN  231 (286)
T ss_pred             cCcccccccCCHHHHhC------CCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcccc
Confidence              234678999996522      2346789999999999999999999997533211 111 11110000 00000    


Q ss_pred             --------cchhhccC--hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 --------FDFELIMD--KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 --------~d~~~~~~--~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                              .++....+  .........+.+++.+||+.+|++||++.|++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  282 (286)
T cd07847         232 QFFKGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLE  282 (286)
T ss_pred             cccccccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence                    00000000  001112346778899999999999999998864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=5.9e-34  Score=290.37  Aligned_cols=236  Identities=20%  Similarity=0.348  Sum_probs=186.4

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ..+.||+|+||.||+|... ++..||+|.+....   ....+..|+.++++++||||+++++++......++||||+++|
T Consensus         8 ~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   87 (277)
T cd06640           8 KLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYLGGG   87 (277)
T ss_pred             hhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecCCCC
Confidence            3467999999999999864 57889999887542   2345778899999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.+++...      ++++.....++.|++.||+|||+   .+++|+||+|+||+++.++.++|+|||++......    
T Consensus        88 ~L~~~i~~~------~l~~~~~~~~~~~l~~~l~~lh~---~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~  158 (277)
T cd06640          88 SALDLLRAG------PFDEFQIATMLKEILKGLDYLHS---EKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKR  158 (277)
T ss_pred             cHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHh---CCccCcCCChhhEEEcCCCCEEEcccccceeccCCcccc
Confidence            999998643      47888899999999999999994   56999999999999999999999999998765321    


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                        ...+..|+|||++       ....++.++|||||||++|||+||+.||......  ......... .          .
T Consensus       159 ~~~~~~~~y~apE~~-------~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~--~~~~~~~~~-~----------~  218 (277)
T cd06640         159 NTFVGTPFWMAPEVI-------QQSAYDSKADIWSLGITAIELAKGEPPNSDMHPM--RVLFLIPKN-N----------P  218 (277)
T ss_pred             ccccCcccccCHhHh-------ccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChH--hHhhhhhcC-C----------C
Confidence              2346679999964       3345678999999999999999999998643211  111111000 0          0


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                      +.........+.+++.+||+.+|++||++.++++.
T Consensus       219 ~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06640         219 PTLTGEFSKPFKEFIDACLNKDPSFRPTAKELLKH  253 (277)
T ss_pred             CCCchhhhHHHHHHHHHHcccCcccCcCHHHHHhC
Confidence            00112334567788889999999999999999653

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.9e-35  Score=305.57  Aligned_cols=228  Identities=19%  Similarity=0.277  Sum_probs=171.9

Q ss_pred             ccccCcceEEEEEeC-CCcEEEEEEecccc--ch---HHHHHHHHHHhcc---CCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          341 LGKGCVGATYKVVLD-GGDVVVVKRIRERK--KK---REVDEWLRVIGGL---RHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       341 iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~--~~---~~~~~e~~~l~~l---~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ||+|+||+||+|+.. ++..||||++....  ..   .....|..++...   +||||+++++++...+..|+||||+++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            799999999999854 58899999986431  11   2233444555544   699999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....     .+++.....++.||+.||+|||+   .+|+||||||+|||++.++.+||+|||+++....    
T Consensus        81 g~L~~~l~~~~-----~~~~~~~~~~~~qil~al~~LH~---~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~  152 (330)
T cd05586          81 GELFWHLQKEG-----RFSEDRAKFYIAELVLALEHLHK---YDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKT  152 (330)
T ss_pred             ChHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCC
Confidence            99999987543     47889999999999999999995   4599999999999999999999999999875321    


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                        ...++..|+|||++..      ...++.++|||||||++|||+||+.||......  +..+......       ..+.
T Consensus       153 ~~~~~gt~~y~aPE~~~~------~~~~~~~~DvwslGvil~elltG~~Pf~~~~~~--~~~~~i~~~~-------~~~~  217 (330)
T cd05586         153 TNTFCGTTEYLAPEVLLD------EKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQ--QMYRNIAFGK-------VRFP  217 (330)
T ss_pred             ccCccCCccccCHHHHcC------CCCCCCccceeccccEEEEeccCCCCCCCCCHH--HHHHHHHcCC-------CCCC
Confidence              2346889999997532      234678999999999999999999999754321  1111111110       0000


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNM  595 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~  595 (640)
                       ....   ..++.+++.+||+.||++||++
T Consensus       218 -~~~~---~~~~~~li~~~L~~~P~~R~~~  243 (330)
T cd05586         218 -KNVL---SDEGRQFVKGLLNRNPQHRLGA  243 (330)
T ss_pred             -CccC---CHHHHHHHHHHcCCCHHHCCCC
Confidence             0111   2235567778999999999954

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=2.9e-34  Score=293.94  Aligned_cols=234  Identities=19%  Similarity=0.246  Sum_probs=181.1

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||+||++.. .+++.||+|.+....     ....+.+|++++++++|+||+++.+++..++..++||||+++
T Consensus         5 ~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~   84 (285)
T cd05632           5 YRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTIMNG   84 (285)
T ss_pred             EEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEeccC
Confidence            35799999999999986 468899999986542     123466799999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....   ...+++..+..++.|++.||+|||+   .+|+||||||+||++++++.+||+|||++.....    
T Consensus        85 ~~L~~~~~~~~---~~~~~~~~~~~~~~ql~~~l~~lH~---~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~  158 (285)
T cd05632          85 GDLKFHIYNMG---NPGFEEERALFYAAEILCGLEDLHR---ENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGESI  158 (285)
T ss_pred             ccHHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCCHHHEEECCCCCEEEecCCcceecCCCCcc
Confidence            99998886432   1258999999999999999999994   5699999999999999999999999999865432    


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcch--HHHHHHhhcccccccccchhh
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGI--VKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~  564 (640)
                       ...++..|+|||++       ....++.++|||||||++|||+||+.||.......  ..+......         ...
T Consensus       159 ~~~~g~~~~~aPE~~-------~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~~~~~~~~~~---------~~~  222 (285)
T cd05632         159 RGRVGTVGYMAPEVL-------NNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLE---------TEE  222 (285)
T ss_pred             cCCCCCcCccChHHh-------cCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhhc---------ccc
Confidence             23457899999964       34557789999999999999999999997432211  111111110         000


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMS  596 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~  596 (640)
                      .....   ....+.+++..|++.||++||++.
T Consensus       223 ~~~~~---~~~~~~~li~~~l~~~P~~R~~~~  251 (285)
T cd05632         223 VYSAK---FSEEAKSICKMLLTKDPKQRLGCQ  251 (285)
T ss_pred             ccCcc---CCHHHHHHHHHHccCCHhHcCCCc
Confidence            11111   123456777889999999999943

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.4e-35  Score=277.10  Aligned_cols=245  Identities=18%  Similarity=0.291  Sum_probs=192.5

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEecccc------c----hHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEE
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERK------K----KREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFL  404 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~------~----~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  404 (640)
                      ..+++|+|..++|-++.. .+|...|+|++....      .    .++..+|+.+|+++ .||+|+++.++|..+...++
T Consensus        21 pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~sF~Fl  100 (411)
T KOG0599|consen   21 PKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDAFVFL  100 (411)
T ss_pred             hHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcchhhh
Confidence            357899999999988774 568889999886431      1    23345688899987 59999999999999999999


Q ss_pred             EEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          405 VYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      |+|.|+.|.|.++|...-     .++.++..+|+.|+..|++|||.   ..||||||||+|||+|++..+||+|||.+..
T Consensus       101 VFdl~prGELFDyLts~V-----tlSEK~tR~iMrqlfegVeylHa---~~IVHRDLKpENILlddn~~i~isDFGFa~~  172 (411)
T KOG0599|consen  101 VFDLMPRGELFDYLTSKV-----TLSEKETRRIMRQLFEGVEYLHA---RNIVHRDLKPENILLDDNMNIKISDFGFACQ  172 (411)
T ss_pred             hhhhcccchHHHHhhhhe-----eecHHHHHHHHHHHHHHHHHHHH---hhhhhcccChhheeeccccceEEeccceeec
Confidence            999999999999998654     68899999999999999999995   4599999999999999999999999999988


Q ss_pred             cCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccc
Q 006559          485 FHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       485 ~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  559 (640)
                      +..     ..++|++|.|||.+....+ -....|+..+|+||.||+||-|+.|.+||......+  .+++....  ..+.
T Consensus       173 l~~GekLrelCGTPgYLAPEtikC~m~-e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQml--MLR~ImeG--kyqF  247 (411)
T KOG0599|consen  173 LEPGEKLRELCGTPGYLAPETIKCSMY-ENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQML--MLRMIMEG--KYQF  247 (411)
T ss_pred             cCCchhHHHhcCCCcccChhheeeecc-cCCCCccchhhHHHHHHHHHHHHcCCCchhHHHHHH--HHHHHHhc--cccc
Confidence            765     3578999999998754432 245678899999999999999999999996321111  11111111  0111


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      -      .++..+....+.+++.+|++.||++|.|.+|++.
T Consensus       248 ~------speWadis~~~KdLIsrlLqVdp~~Ritake~La  282 (411)
T KOG0599|consen  248 R------SPEWADISATVKDLISRLLQVDPTKRITAKEALA  282 (411)
T ss_pred             C------CcchhhccccHHHHHHHHHeeCchhcccHHHHhc
Confidence            1      1233344455667788899999999999999864

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=1.4e-34  Score=307.02  Aligned_cols=190  Identities=19%  Similarity=0.281  Sum_probs=160.3

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+++.. +++.+|+|.+...     ...+.+.+|+.+++.++||||+++++++...+..|+||||+++
T Consensus        48 ~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~g  127 (371)
T cd05622          48 VKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPG  127 (371)
T ss_pred             EEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCC
Confidence            567999999999999965 5788999998643     1234467889999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++...      .++......++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....    
T Consensus       128 g~L~~~~~~~------~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~~  198 (371)
T cd05622         128 GDLVNLMSNY------DVPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMV  198 (371)
T ss_pred             CcHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHHH---CCEEeCCCCHHHEEECCCCCEEEEeCCceeEcCcCCcc
Confidence            9999998743      36777888899999999999994   5699999999999999999999999999876532    


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG  539 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~  539 (640)
                         ...+|..|+|||++....   ....++.++|||||||++|||++|+.||...
T Consensus       199 ~~~~~~gt~~y~aPE~l~~~~---~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  250 (371)
T cd05622         199 RCDTAVGTPDYISPEVLKSQG---GDGYYGRECDWWSVGVFLYEMLVGDTPFYAD  250 (371)
T ss_pred             cccCcccCccccCHHHHhccC---CCccCCCccceeehhHHHHHHHhCCCCCCCC
Confidence               234688999999864321   1234678999999999999999999999754

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=2.2e-34  Score=294.87  Aligned_cols=239  Identities=19%  Similarity=0.254  Sum_probs=184.0

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .++||+|+||.||++... +++.||||.+....     ..+.+..|+.++++++|+||+++.+.+...+..++||||+++
T Consensus         5 ~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g   84 (285)
T cd05630           5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNG   84 (285)
T ss_pred             eEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEecCC
Confidence            467999999999999854 57899999986542     123466789999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....   ...+++..+..++.|++.||.|||   ..+|+||||||+||+++.++.++|+|||++.....    
T Consensus        85 ~~L~~~l~~~~---~~~l~~~~~~~~~~qi~~~l~~lH---~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~  158 (285)
T cd05630          85 GDLKFHIYHMG---EAGFEEGRAVFYAAEICCGLEDLH---QERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTI  158 (285)
T ss_pred             CcHHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHEEECCCCCEEEeeccceeecCCCccc
Confidence            99999886432   225888999999999999999999   45699999999999999999999999999876432    


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchH-HHHHHhhcccccccccchhhc
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIV-KWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~  565 (640)
                       ...++..|+|||++       ....++.++|||||||++|||++|+.||........ .-.......        ....
T Consensus       159 ~~~~g~~~y~aPE~~-------~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~~~~--------~~~~  223 (285)
T cd05630         159 KGRVGTVGYMAPEVV-------KNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKE--------VQEE  223 (285)
T ss_pred             cCCCCCccccChHHH-------cCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHhhhhh--------hhhh
Confidence             12457789999964       345677899999999999999999999975322110 000000000        0000


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPN-----MSIVHR  600 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs-----~~~v~~  600 (640)
                      ...   ....++.+++..||+.||++||+     +.|+.+
T Consensus       224 ~~~---~~~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~  260 (285)
T cd05630         224 YSE---KFSPDARSLCKMLLCKDPKERLGCQGGGAREVKE  260 (285)
T ss_pred             cCc---cCCHHHHHHHHHHhhcCHHHccCCCCCchHHHHc
Confidence            011   12234667788899999999999     677765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=2.5e-34  Score=292.17  Aligned_cols=245  Identities=21%  Similarity=0.366  Sum_probs=185.6

Q ss_pred             hccccccCcceEEEEEeC----CCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCC------eEE
Q 006559          338 AELLGKGCVGATYKVVLD----GGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKD------ELF  403 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~----~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~------~~~  403 (640)
                      .++||+|+||.||+|.+.    .+..||||.+...    ...+++.+|++++++++||||+++++++...+      ..+
T Consensus         4 ~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   83 (273)
T cd05074           4 GRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLPIPM   83 (273)
T ss_pred             hhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcccceE
Confidence            467999999999999853    3578999998754    22345778999999999999999999886532      357


Q ss_pred             EEEeccCCCCHHHhhccCC-CCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcc
Q 006559          404 LVYDYLPHGSLHSLLHGSR-GPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVH  482 (640)
Q Consensus       404 lV~Ey~~~gsL~~~l~~~~-~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~  482 (640)
                      +++||+++|+|.+++.... ......+++....+++.|++.||+|||+   .+|+||||||+||+++.++.+|++|||++
T Consensus        84 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~nili~~~~~~kl~dfg~~  160 (273)
T cd05074          84 VILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSS---KNFIHRDLAARNCMLNENMTVCVADFGLS  160 (273)
T ss_pred             EEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccchhhEEEcCCCCEEECccccc
Confidence            8999999999998875332 1122357888999999999999999995   45999999999999999999999999998


Q ss_pred             cccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCc-chHHHHHHhhc
Q 006559          483 QLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGEL-GIVKWVQMMGQ  552 (640)
Q Consensus       483 ~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~-~~~~~~~~~~~  552 (640)
                      +.....        ...+..|++||.+       ....++.++|||||||++|||++ |+.||..... ....+..   .
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~pe~~-------~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~~~~~~~~---~  230 (273)
T cd05074         161 KKIYSGDYYRQGCASKLPVKWLALESL-------ADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEIYNYLI---K  230 (273)
T ss_pred             ccccCCcceecCCCccCchhhcCHhHH-------hcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHH---c
Confidence            865321        1224568888853       44556789999999999999999 8888864321 1111111   1


Q ss_pred             ccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          553 DESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       553 ~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                      ...        ....   ......+.+++.+||+.+|++||++.++.+.|+++.
T Consensus       231 ~~~--------~~~~---~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~~  273 (273)
T cd05074         231 GNR--------LKQP---PDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLELIW  273 (273)
T ss_pred             CCc--------CCCC---CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhhC
Confidence            100        0000   122346788899999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.2e-34  Score=299.12  Aligned_cols=193  Identities=19%  Similarity=0.283  Sum_probs=161.1

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+++.. +++.||+|.+...     ...+.+.+|+.++..++|+||+++++++...+..|+||||+++
T Consensus         6 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g   85 (331)
T cd05597           6 LKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVMDYYVG   85 (331)
T ss_pred             EEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEEecCCC
Confidence            467999999999999964 5889999998642     1234577888999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---  488 (640)
                      |+|.+++....    ..+++..+..++.||+.||+|||   ..+|+||||||+|||++.++.+||+|||++......   
T Consensus        86 ~~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~  158 (331)
T cd05597          86 GDLLTLLSKFE----DRLPEDMARFYLAEMVLAIDSVH---QLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTV  158 (331)
T ss_pred             CcHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH---hCCeEECCCCHHHEEECCCCCEEEEECCceeecCCCCCc
Confidence            99999997532    14788889999999999999999   456999999999999999999999999998764321   


Q ss_pred             ----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 006559          489 ----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG  539 (640)
Q Consensus       489 ----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~  539 (640)
                          ..++..|+|||++....  .....++.++|||||||++|||++|+.||...
T Consensus       159 ~~~~~~gt~~y~aPE~~~~~~--~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~  211 (331)
T cd05597         159 QSNVAVGTPDYISPEILQAME--DGKGRYGPECDWWSLGVCMYEMLYGETPFYAE  211 (331)
T ss_pred             cccceeccccccCHHHHhhcc--ccccCCCCcceeehhhhHHHHHhhCCCCCCCC
Confidence                24688999999763211  11245678999999999999999999999753

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=1e-34  Score=302.74  Aligned_cols=229  Identities=19%  Similarity=0.285  Sum_probs=177.7

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhccC-CCcccceeEEEEcCCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      .++||+|+||.||+|+.. ++..||+|.+....     ..+.+..|.+++..+. |++|+++.+++...+..|+||||++
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~Ey~~   84 (323)
T cd05615           5 LMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVMEYVN   84 (323)
T ss_pred             EEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEEcCCC
Confidence            467999999999999854 68899999987541     2234566777887775 5778889999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                      +|+|.+++....     .+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....   
T Consensus        85 ~g~L~~~i~~~~-----~l~~~~~~~i~~qi~~al~~lH~---~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~  156 (323)
T cd05615          85 GGDLMYHIQQVG-----KFKEPQAVFYAAEISVGLFFLHR---RGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGV  156 (323)
T ss_pred             CCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEEeccccccccCCCCc
Confidence            999999987543     58899999999999999999994   5699999999999999999999999999875321   


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         ...++..|+|||++       ....++.++|||||||++|||+||+.||......  ...+.....         ..
T Consensus       157 ~~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~--~~~~~i~~~---------~~  218 (323)
T cd05615         157 TTRTFCGTPDYIAPEII-------AYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDED--ELFQSIMEH---------NV  218 (323)
T ss_pred             cccCccCCccccCHHHH-------cCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHH--HHHHHHHhC---------CC
Confidence               23468899999965       3345678999999999999999999999754321  111111110         11


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNM  595 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~  595 (640)
                      ..+...   ..++.+++.+|++.+|++|++.
T Consensus       219 ~~p~~~---~~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05615         219 SYPKSL---SKEAVSICKGLMTKHPSKRLGC  246 (323)
T ss_pred             CCCccC---CHHHHHHHHHHcccCHhhCCCC
Confidence            111111   2345677888999999999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=4.1e-34  Score=294.47  Aligned_cols=236  Identities=21%  Similarity=0.334  Sum_probs=185.3

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      .+.||.|+||.||+|+. .+++.|++|.+...  ...+.+.+|+.+++.++||||+++++++...+..++|+||+++++|
T Consensus        24 ~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L  103 (296)
T cd06655          24 YEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYLAGGSL  103 (296)
T ss_pred             EEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEecCCCcH
Confidence            45799999999999984 56889999988654  2345677899999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------C
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------P  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------~  488 (640)
                      .+++...      .+++..+..++.|++.||+|||+   .+++||||||+||+++.++.+||+|||++.....      .
T Consensus       104 ~~~~~~~------~l~~~~~~~i~~~l~~al~~LH~---~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~  174 (296)
T cd06655         104 TDVVTET------CMDEAQIAAVCRECLQALEFLHA---NQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRST  174 (296)
T ss_pred             HHHHHhc------CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEccCccchhcccccccCCC
Confidence            9998643      47899999999999999999994   5699999999999999999999999999876532      1


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..++..|+|||.+       ....++.++|||||||++|||+||+.||......  .......... .     +.+....
T Consensus       175 ~~~~~~y~aPE~~-------~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~--~~~~~~~~~~-~-----~~~~~~~  239 (296)
T cd06655         175 MVGTPYWMAPEVV-------TRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPL--RALYLIATNG-T-----PELQNPE  239 (296)
T ss_pred             cCCCccccCcchh-------cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhcC-C-----cccCCcc
Confidence            2356789999954       3455778999999999999999999999753221  1111111000 0     0000111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                         .....+.+++.+||..+|++||++.+++.
T Consensus       240 ---~~~~~~~~li~~~l~~dp~~Rpt~~~il~  268 (296)
T cd06655         240 ---KLSPIFRDFLNRCLEMDVEKRGSAKELLQ  268 (296)
T ss_pred             ---cCCHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence               11234666788899999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-34  Score=294.06  Aligned_cols=244  Identities=19%  Similarity=0.289  Sum_probs=187.9

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc--chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK--KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      ..+.||+|+||.||+++.. ++..+|+|.+....  ..+.+..|+.++++++||||+++++++...+..|+||||+++|+
T Consensus         9 i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   88 (280)
T cd06611           9 IIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEFCDGGA   88 (280)
T ss_pred             HHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeeccCCCc
Confidence            3567999999999999964 57889999986542  33567789999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-----
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-----  488 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-----  488 (640)
                      |.+++....    .++++.....++.|++.||.|||+   .+|+|+||||+||+++.++.++|+|||++......     
T Consensus        89 L~~~~~~~~----~~l~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~  161 (280)
T cd06611          89 LDSIMLELE----RGLTEPQIRYVCRQMLEALNFLHS---HKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRD  161 (280)
T ss_pred             HHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEECCCCCEEEccCccchhhcccccccc
Confidence            999987543    258899999999999999999995   45999999999999999999999999987654321     


Q ss_pred             -ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          489 -FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       489 -~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                       ..++..|++||++...  ......++.++|||||||++|||++|+.||.....  ............      +.+..+
T Consensus       162 ~~~~~~~y~~PE~~~~~--~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~~~~------~~~~~~  231 (280)
T cd06611         162 TFIGTPYWMAPEVVACE--TFKDNPYDYKADIWSLGITLIELAQMEPPHHELNP--MRVLLKILKSEP------PTLDQP  231 (280)
T ss_pred             eeecchhhcCHHHHhhc--ccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCH--HHHHHHHhcCCC------CCcCCc
Confidence             2357789999975422  12234567899999999999999999999975321  111111111100      001011


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .   ....++.+++..||+.+|++||++.++++
T Consensus       232 ~---~~~~~~~~li~~~l~~~p~~Rps~~~il~  261 (280)
T cd06611         232 S---KWSSSFNDFLKSCLVKDPDDRPTAAELLK  261 (280)
T ss_pred             c---cCCHHHHHHHHHHhccChhhCcCHHHHhc
Confidence            1   11234667788899999999999999865

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-36  Score=284.46  Aligned_cols=238  Identities=20%  Similarity=0.316  Sum_probs=196.4

Q ss_pred             HhhccccccCcceEEEEEe-CCCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          336 SSAELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       336 ~~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ...++||+|+||.||++.+ ..|+++|||++....+-+++.+|+.++++.+.|++|+++|.|.....+|+|||||-.|++
T Consensus        36 Di~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCGAGSi  115 (502)
T KOG0574|consen   36 DIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDTDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCGAGSI  115 (502)
T ss_pred             HHHHHhcCCcchHHHHHHHhccCcEEEEEecCccchHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcCCCcH
Confidence            4566899999999999985 569999999999888889999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------C
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------P  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------~  488 (640)
                      .+.++..+    .++...++-.+....++||+|||.   .+-||||||+.||||+.+|.+|++|||++-.+..      .
T Consensus       116 SDI~R~R~----K~L~E~EIs~iL~~TLKGL~YLH~---~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAKRNT  188 (502)
T KOG0574|consen  116 SDIMRARR----KPLSEQEISAVLRDTLKGLQYLHD---LKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAKRNT  188 (502)
T ss_pred             HHHHHHhc----CCccHHHHHHHHHHHHhHHHHHHH---HHHHHhhcccccEEEcccchhhhhhccccchhhhhHHhhCc
Confidence            99998654    378999999999999999999994   4578999999999999999999999999877643      4


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccccc-chhhccC
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVF-DFELIMD  567 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~  567 (640)
                      ..+|+.|||||++       ....|++++||||+|+...||..|++||.+-+-.-+           +.-+- .+.. .-
T Consensus       189 VIGTPFWMAPEVI-------~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMRA-----------IFMIPT~PPP-TF  249 (502)
T KOG0574|consen  189 VIGTPFWMAPEVI-------EEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRA-----------IFMIPTKPPP-TF  249 (502)
T ss_pred             cccCcccccHHHH-------HHhccchhhhHhhhcchhhhhhcCCCCcccccccce-----------eEeccCCCCC-CC
Confidence            5679999999975       445678999999999999999999999975221100           00000 0111 11


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVH  599 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~  599 (640)
                      ...++...++-+++..|+-..|++|-|+.+++
T Consensus       250 ~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~  281 (502)
T KOG0574|consen  250 KKPEEWSSEFNDFIRSCLIKKPEERKTALRLC  281 (502)
T ss_pred             CChHhhhhHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            12245566788889999999999999887765

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-33  Score=285.05  Aligned_cols=243  Identities=22%  Similarity=0.358  Sum_probs=187.4

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      .+.||+|+||.||+|... ++..+++|.+...  ...+.+.+|+.++++++||||+++++++...+..|++|||+++++|
T Consensus         8 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~~~~~~l   87 (262)
T cd06613           8 IQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEYCGGGSL   87 (262)
T ss_pred             EEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeCCCCCcH
Confidence            467999999999999864 5778999998754  2346788899999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------C
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------P  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------~  488 (640)
                      .+++....    ..++...+..++.|++.||+|||.   .+|+|+||||+||++++++.+||+|||++.....      .
T Consensus        88 ~~~~~~~~----~~l~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~  160 (262)
T cd06613          88 QDIYQVTR----GPLSELQIAYVCRETLKGLAYLHE---TGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKS  160 (262)
T ss_pred             HHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHHh---CCceecCCChhhEEECCCCCEEECccccchhhhhhhhcccc
Confidence            99987542    257889999999999999999994   4599999999999999999999999999876532      1


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ...+..|+|||+....    ....++.++|||||||++|||+||+.||.+......  ........     +.+....  
T Consensus       161 ~~~~~~y~~Pe~~~~~----~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~--~~~~~~~~-----~~~~~~~--  227 (262)
T cd06613         161 FIGTPYWMAPEVAAVE----RKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRA--LFLISKSN-----FPPPKLK--  227 (262)
T ss_pred             ccCCccccCchhhccc----ccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHH--HHHHHhcc-----CCCcccc--
Confidence            2346679999964221    112667899999999999999999999875321111  10111000     0000000  


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .......++.+++.+||..+|.+||++.+|+.
T Consensus       228 ~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  259 (262)
T cd06613         228 DKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQ  259 (262)
T ss_pred             chhhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            11123345778888999999999999999874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=5.2e-34  Score=294.41  Aligned_cols=249  Identities=16%  Similarity=0.281  Sum_probs=184.0

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||.||+|+.. ++..||+|.++..   .....+.+|++++++++||||+++++++...+..++||||++ ++
T Consensus        11 ~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~~~-~~   89 (301)
T cd07873          11 LDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD-KD   89 (301)
T ss_pred             eeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEeccc-cC
Confidence            467999999999999865 5788999998643   223456789999999999999999999999999999999997 58


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------  487 (640)
                      |.+++....    ..+++.....++.|+++||+|||+   .+|+||||||+||++++++.+||+|||+++....      
T Consensus        90 l~~~l~~~~----~~~~~~~~~~~~~qi~~aL~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~  162 (301)
T cd07873          90 LKQYLDDCG----NSINMHNVKLFLFQLLRGLNYCHR---RKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYS  162 (301)
T ss_pred             HHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHHHEEECCCCcEEECcCcchhccCCCCCccc
Confidence            998887543    247888999999999999999994   5699999999999999999999999999876432      


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHhhc--ccccccc-----
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQ--DESAWEV-----  559 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~~~--~~~~~~~-----  559 (640)
                      ....+..|+|||++.+      ...++.++|||||||++|||+||+.||...... ....+.....  ....+..     
T Consensus       163 ~~~~~~~y~~PE~~~~------~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (301)
T cd07873         163 NEVVTLWYRPPDILLG------STDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNE  236 (301)
T ss_pred             ccceeecccCcHHHhC------CCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhccc
Confidence            1234678999997532      234667899999999999999999999754321 1111111100  0000100     


Q ss_pred             ----cchhhccChH----HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 ----FDFELIMDKE----MEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 ----~d~~~~~~~~----~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                          .+........    .......+.+++.+|++.||++|||+.|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~  285 (301)
T cd07873         237 EFKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMK  285 (301)
T ss_pred             cccccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence                0000000000    0011234667888999999999999999875

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2e-34  Score=321.84  Aligned_cols=246  Identities=25%  Similarity=0.402  Sum_probs=194.6

Q ss_pred             hhccccccCcceEEEEEeCC--------CcEEEEEEecccc---chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEE
Q 006559          337 SAELLGKGCVGATYKVVLDG--------GDVVVVKRIRERK---KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFL  404 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~--------~~~vavK~l~~~~---~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  404 (640)
                      ..+.+|+|.||.|++|...+        ...||||.++...   ..+.+..|+.+|+.+ +|+||+.++|+|..++..++
T Consensus       300 ~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~~~~~  379 (609)
T KOG0200|consen  300 LGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQDGPLYV  379 (609)
T ss_pred             ccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccCCceEE
Confidence            34589999999999998431        3469999998763   346788899999887 59999999999999999999


Q ss_pred             EEeccCCCCHHHhhccCC---------CCCC--CCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC
Q 006559          405 VYDYLPHGSLHSLLHGSR---------GPGR--MPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN  473 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~---------~~~~--~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~  473 (640)
                      |+||+..|+|.++|+..+         ....  ..++..+.+.++.|||.||+||+   ..++|||||.++|||+.++..
T Consensus       380 v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~---~~~~vHRDLAaRNVLi~~~~~  456 (609)
T KOG0200|consen  380 IVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLA---SVPCVHRDLAARNVLITKNKV  456 (609)
T ss_pred             EEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHh---hCCccchhhhhhhEEecCCCE
Confidence            999999999999998776         1111  23888999999999999999999   455999999999999999999


Q ss_pred             eEEccCCcccccCC-Ccc--------ccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC--Cc
Q 006559          474 ACISDIGVHQLFHT-PFF--------INDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDG--EL  541 (640)
Q Consensus       474 ~kl~DfGl~~~~~~-~~~--------~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~--~~  541 (640)
                      +||+|||+++.... .++        ....|||||       ......|+.|+|||||||+||||+| |..|+.+-  ..
T Consensus       457 ~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApE-------sl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~  529 (609)
T KOG0200|consen  457 IKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPE-------SLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPTE  529 (609)
T ss_pred             EEEccccceeccCCCCceEecCCCCccceeecCHH-------HhccCcccccchhhHHHHHHHHHhhCCCCCCCCCCcHH
Confidence            99999999985432 111        123588888       4556789999999999999999999 88998751  12


Q ss_pred             chHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          542 GIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                      ++.++++...+.              +....+..+++++|..||+.+|++||++.++++.++...
T Consensus       530 ~l~~~l~~G~r~--------------~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~l  580 (609)
T KOG0200|consen  530 ELLEFLKEGNRM--------------EQPEHCSDEIYDLMKSCWNADPEDRPTFSECVEFFEKHL  580 (609)
T ss_pred             HHHHHHhcCCCC--------------CCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHH
Confidence            222222221111              111233456778999999999999999999999999954

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=3e-34  Score=303.37  Aligned_cols=244  Identities=20%  Similarity=0.261  Sum_probs=180.0

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcC------CeEEEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGK------DELFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------~~~~lV~  406 (640)
                      .+.||+|+||.||++.. ..+..||||++...    ...+.+.+|+.+++.++||||+++++++...      ...|+||
T Consensus        22 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~  101 (355)
T cd07874          22 LKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEFQDVYLVM  101 (355)
T ss_pred             EEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccccceeEEEh
Confidence            46799999999999985 45788999998753    2234566789999999999999999988643      3579999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||+++ ++.+.+..       .+++..+..++.|++.||+|||   ..+|+||||||+|||++.++.+||+|||+++...
T Consensus       102 e~~~~-~l~~~~~~-------~l~~~~~~~~~~qi~~aL~~LH---~~givHrDikp~Nill~~~~~~kl~Dfg~~~~~~  170 (355)
T cd07874         102 ELMDA-NLCQVIQM-------ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  170 (355)
T ss_pred             hhhcc-cHHHHHhh-------cCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHHEEECCCCCEEEeeCcccccCC
Confidence            99975 67666642       3778889999999999999999   4569999999999999999999999999998754


Q ss_pred             C-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccc-------
Q 006559          487 T-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDE-------  554 (640)
Q Consensus       487 ~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~-------  554 (640)
                      .     ...++..|+|||++       ....++.++|||||||++|||++|+.||..... ...|......-.       
T Consensus       171 ~~~~~~~~~~t~~y~aPE~~-------~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~  242 (355)
T cd07874         171 TSFMMTPYVVTRYYRAPEVI-------LGMGYKENVDIWSVGCIMGEMVRHKILFPGRDY-IDQWNKVIEQLGTPCPEFM  242 (355)
T ss_pred             CccccCCccccCCccCHHHH-------cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHHH
Confidence            3     23468899999965       334577899999999999999999999975331 111111111000       


Q ss_pred             ---------------ccccccchhh------ccCh-HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          555 ---------------SAWEVFDFEL------IMDK-EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       555 ---------------~~~~~~d~~~------~~~~-~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                                     .......+..      ..+. .......++.+++.+|++.||++|||+.|+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~  310 (355)
T cd07874         243 KKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQ  310 (355)
T ss_pred             HhhcHHHHHHHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhc
Confidence                           0000000000      0000 00111245678889999999999999999986

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=2.1e-34  Score=294.64  Aligned_cols=248  Identities=19%  Similarity=0.300  Sum_probs=182.6

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|+.. +|..||+|.++...    ....+.+|++++++++||||+++++++.+....++|+||++ +
T Consensus         5 ~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~   83 (284)
T cd07839           5 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEYCD-Q   83 (284)
T ss_pred             EEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEecCC-C
Confidence            467999999999999964 68899999986431    23456789999999999999999999999999999999997 5


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      +|.+++....    ..+++.....++.||++||.|||+   .+|+||||||+||+++.++.+||+|||+++....     
T Consensus        84 ~l~~~~~~~~----~~~~~~~~~~~~~qi~~al~~LH~---~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~  156 (284)
T cd07839          84 DLKKYFDSCN----GDIDPEIVKSFMFQLLKGLAFCHS---HNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCY  156 (284)
T ss_pred             CHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEEcCCCcEEECccchhhccCCCCCCc
Confidence            8888776432    248899999999999999999994   5599999999999999999999999999876542     


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHh----hc-ccccc----
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMM----GQ-DESAW----  557 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~----~~-~~~~~----  557 (640)
                       ....+..|+|||++.+      ...++.++|||||||++|||+||+.|+....... +..+..    .. ....+    
T Consensus       157 ~~~~~~~~y~aPE~~~~------~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  229 (284)
T cd07839         157 SAEVVTLWYRPPDVLFG------AKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVD-DQLKRIFRLLGTPTEESWPGVS  229 (284)
T ss_pred             CCCccccCCcChHHHhC------CcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHH-HHHHHHHHHhCCCChHHhHHhh
Confidence             1234678999997532      2345789999999999999999998864322111 111110    00 00000    


Q ss_pred             cccch--------hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          558 EVFDF--------ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       558 ~~~d~--------~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ...+.        .............++.+++.+||+.||++|||+.++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~  280 (284)
T cd07839         230 KLPDYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQ  280 (284)
T ss_pred             hcccccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhc
Confidence            00000        00000001112345667888899999999999999865

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=4.9e-34  Score=289.06  Aligned_cols=235  Identities=23%  Similarity=0.363  Sum_probs=183.0

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc-----------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-----------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLV  405 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV  405 (640)
                      ...||+|+||.||+|.. .++..+|+|.+....           ..+.+.+|+.++++++||||+++++++...+..++|
T Consensus         5 ~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   84 (267)
T cd06628           5 GALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHLNIF   84 (267)
T ss_pred             cceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCccEEE
Confidence            45799999999999985 457889999886431           113567889999999999999999999999999999


Q ss_pred             EeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccccc
Q 006559          406 YDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF  485 (640)
Q Consensus       406 ~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~  485 (640)
                      |||+++++|.+++....     .+++..+..++.|++.||+|||+   .+++||||+|+||++++++.+||+|||+++..
T Consensus        85 ~e~~~~~~L~~~l~~~~-----~l~~~~~~~~~~~l~~~l~~lH~---~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~  156 (267)
T cd06628          85 LEYVPGGSVAALLNNYG-----AFEETLVRNFVRQILKGLNYLHN---RGIIHRDIKGANILVDNKGGIKISDFGISKKL  156 (267)
T ss_pred             EEecCCCCHHHHHHhcc-----CccHHHHHHHHHHHHHHHHHHHh---cCcccccCCHHHEEEcCCCCEEecccCCCccc
Confidence            99999999999997543     57888999999999999999994   45999999999999999999999999998766


Q ss_pred             CCC------------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcc
Q 006559          486 HTP------------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQD  553 (640)
Q Consensus       486 ~~~------------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~  553 (640)
                      ...            ..++..|+|||.+       ....++.++|||||||++|||+||+.||......  .-+......
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~y~~pe~~-------~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~  227 (267)
T cd06628         157 EANSLSTKTNGARPSLQGSVFWMAPEVV-------KQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQL--QAIFKIGEN  227 (267)
T ss_pred             ccccccCCccccccccCCCcCccChhHh-------ccCCCCchhhhHHHHHHHHHHhhCCCCCCCccHH--HHHHHHhcc
Confidence            421            1245679999964       3445678899999999999999999999753211  111110000


Q ss_pred             cccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          554 ESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       554 ~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                            ..+..  +.   .....+.+++.+||+.+|++||++.++++
T Consensus       228 ------~~~~~--~~---~~~~~~~~li~~~l~~~p~~Rp~~~~il~  263 (267)
T cd06628         228 ------ASPEI--PS---NISSEAIDFLEKTFEIDHNKRPTAAELLK  263 (267)
T ss_pred             ------CCCcC--Cc---ccCHHHHHHHHHHccCCchhCcCHHHHhh
Confidence                  00111  11   12234666778899999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=7.3e-34  Score=285.92  Aligned_cols=238  Identities=20%  Similarity=0.280  Sum_probs=187.4

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .++||+|+||.||.++. .++..+++|.+...    ...+.+.+|++++++++|+||+++++++...+..++||||+++|
T Consensus         5 ~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~~~~~   84 (256)
T cd08221           5 IRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYANGG   84 (256)
T ss_pred             eeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEecCCC
Confidence            46799999999999884 55788999987643    23456778999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.+++....   ...+++..+..++.|++.||+|||+   .+++|+||||+||++++++.+||+|||+++.....    
T Consensus        85 ~L~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~~~  158 (256)
T cd08221          85 TLYDKIVRQK---GQLFEEEMVLWYLFQIVSAVSYIHK---AGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMA  158 (256)
T ss_pred             cHHHHHHhcc---ccCCCHHHHHHHHHHHHHHHHHHHh---CCccccCCChHhEEEeCCCCEEECcCcceEEcccccccc
Confidence            9999997543   1257899999999999999999995   45999999999999999999999999998765332    


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                        ..++..|.|||+..       ...++.++||||||+++|||++|+.||.....  .+......... ...        
T Consensus       159 ~~~~~~~~y~ape~~~-------~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~--~~~~~~~~~~~-~~~--------  220 (256)
T cd08221         159 ETVVGTPYYMSPELCQ-------GVKYNFKSDIWALGCVLYELLTLKRTFDATNP--LNLVVKIVQGN-YTP--------  220 (256)
T ss_pred             cccCCCccccCHhhcC-------CCCCCCcchhHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHcCC-CCC--------
Confidence              34577899999642       33466789999999999999999999965322  12221111110 000        


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                        .......++.+++..||+.+|++||++.++++.
T Consensus       221 --~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~  253 (256)
T cd08221         221 --VVSVYSSELISLVHSLLQQDPEKRPTADEVLDQ  253 (256)
T ss_pred             --CccccCHHHHHHHHHHcccCcccCCCHHHHhhC
Confidence              001223456677888999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=9.2e-35  Score=307.77  Aligned_cols=187  Identities=20%  Similarity=0.352  Sum_probs=160.3

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+++.. ++..||+|.++..     .....+..|+.++..++||||+++++.+...+..|+||||+++
T Consensus         6 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~E~~~g   85 (360)
T cd05627           6 LKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIMEFLPG   85 (360)
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCCC
Confidence            467999999999999864 5889999998743     1234567789999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....     .+++.....++.|++.||+|||   ..+|+||||||+|||++.++.+||+|||+++....    
T Consensus        86 g~L~~~l~~~~-----~l~~~~~~~~~~qi~~~L~~lH---~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~  157 (360)
T cd05627          86 GDMMTLLMKKD-----TLSEEATQFYIAETVLAIDAIH---QLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRT  157 (360)
T ss_pred             ccHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCeEccCCCHHHEEECCCCCEEEeeccCCccccccccc
Confidence            99999997543     4788899999999999999999   45699999999999999999999999999764321    


Q ss_pred             -------------------------------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHH
Q 006559          488 -------------------------------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEIL  530 (640)
Q Consensus       488 -------------------------------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~  530 (640)
                                                           ...+|..|+|||++       ....++.++|||||||++|||+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~-------~~~~~~~~~DiwSlGvilyel~  230 (360)
T cd05627         158 EFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVF-------MQTGYNKLCDWWSLGVIMYEML  230 (360)
T ss_pred             ccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHH-------cCCCCCCcceeccccceeeecc
Confidence                                                 12467889999975       3455778999999999999999


Q ss_pred             hCCCCCCCC
Q 006559          531 TGKMAKGDG  539 (640)
Q Consensus       531 tg~~p~~~~  539 (640)
                      ||+.||...
T Consensus       231 tG~~Pf~~~  239 (360)
T cd05627         231 IGYPPFCSE  239 (360)
T ss_pred             cCCCCCCCC
Confidence            999999754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=2.8e-34  Score=295.11  Aligned_cols=236  Identities=18%  Similarity=0.286  Sum_probs=182.9

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ...||+|+||.||++.. .++..||||.+...  ...+.+.+|+..+++++|+||+++++.+...+..++||||+++++|
T Consensus        27 ~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L  106 (292)
T cd06658          27 FIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGAL  106 (292)
T ss_pred             hhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCCCcH
Confidence            35699999999999985 45788999998654  2345577899999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------C
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------P  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------~  488 (640)
                      .+++...      .+++..+..++.|++.||+|||+   .+|+||||||+||++++++.+||+|||++.....      .
T Consensus       107 ~~~~~~~------~l~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~  177 (292)
T cd06658         107 TDIVTHT------RMNEEQIATVCLSVLRALSYLHN---QGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKS  177 (292)
T ss_pred             HHHHhcC------CCCHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEcCCCCEEEccCcchhhcccccccCce
Confidence            9988543      37889999999999999999995   4599999999999999999999999999875432      1


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..++..|+|||+.       ....++.++|||||||++|||++|+.||......  .-......      ..........
T Consensus       178 ~~~~~~y~aPE~~-------~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~--~~~~~~~~------~~~~~~~~~~  242 (292)
T cd06658         178 LVGTPYWMAPEVI-------SRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPL--QAMRRIRD------NLPPRVKDSH  242 (292)
T ss_pred             eecCccccCHHHH-------ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHh------cCCCcccccc
Confidence            2356789999964       3345678999999999999999999998743211  11111110      0011111111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ....   .+.+++..||..||++|||+.++++
T Consensus       243 ~~~~---~~~~li~~~l~~~P~~Rpt~~~il~  271 (292)
T cd06658         243 KVSS---VLRGFLDLMLVREPSQRATAQELLQ  271 (292)
T ss_pred             ccCH---HHHHHHHHHccCChhHCcCHHHHhh
Confidence            1122   3555677799999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=5.7e-34  Score=288.61  Aligned_cols=235  Identities=22%  Similarity=0.374  Sum_probs=177.8

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc-------cchHHHHHHHHHHhccCCCcccceeEEEEc--CCeEEEEEe
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER-------KKKREVDEWLRVIGGLRHSNIVSIRAYCNG--KDELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-------~~~~~~~~e~~~l~~l~H~niv~l~~~~~~--~~~~~lV~E  407 (640)
                      .+.||+|+||.||+|.. ..+..|++|++...       ...+.+.+|+.++++++||||+++++++..  ....+++||
T Consensus         7 ~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l~~e   86 (266)
T cd06651           7 GKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLTIFME   86 (266)
T ss_pred             cceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEEEEEe
Confidence            56899999999999986 45889999988633       112457789999999999999999999875  357899999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      |+++++|.+++....     .+++.....++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++....
T Consensus        87 ~~~~~~L~~~l~~~~-----~l~~~~~~~~~~qi~~~l~~LH~---~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~  158 (266)
T cd06651          87 YMPGGSVKDQLKAYG-----ALTESVTRKYTRQILEGMSYLHS---NMIVHRDIKGANILRDSAGNVKLGDFGASKRLQT  158 (266)
T ss_pred             CCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEccCCCcccccc
Confidence            999999999997543     47888899999999999999994   5599999999999999999999999999875432


Q ss_pred             ---------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccc
Q 006559          488 ---------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE  558 (640)
Q Consensus       488 ---------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  558 (640)
                               ....+..|+|||.+       ....++.++|||||||++|||+||+.||.....  ...+.......    
T Consensus       159 ~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~--~~~~~~~~~~~----  225 (266)
T cd06651         159 ICMSGTGIRSVTGTPYWMSPEVI-------SGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEA--MAAIFKIATQP----  225 (266)
T ss_pred             ccccCCccccCCccccccCHHHh-------CCCCCCchhhhHHHHHHHHHHHHCCCCccccch--HHHHHHHhcCC----
Confidence                     12346689999964       344567899999999999999999999974321  11111111100    


Q ss_pred             ccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       559 ~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       ..+..  +....+..   .++ ..||..+|++||+|.||++
T Consensus       226 -~~~~~--~~~~~~~~---~~l-i~~~~~~p~~Rp~~~eil~  260 (266)
T cd06651         226 -TNPQL--PSHISEHA---RDF-LGCIFVEARHRPSAEELLR  260 (266)
T ss_pred             -CCCCC--chhcCHHH---HHH-HHHhcCChhhCcCHHHHhc
Confidence             00111  11112222   223 3688899999999999964

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=2.8e-34  Score=293.87  Aligned_cols=248  Identities=25%  Similarity=0.380  Sum_probs=186.1

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|..+ +++.||+|.+....    ..+.+.+|+++++.++||||+++++++..++..++||||++++
T Consensus         6 ~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   85 (286)
T cd07846           6 LGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEFVDHT   85 (286)
T ss_pred             eeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEecCCcc
Confidence            467999999999999975 58899999876542    2346778999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      +|.++.....     .++|..+..++.|++.||+|||+   .+|+|+||+|+||++++++.+||+|||++.....     
T Consensus        86 ~l~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~LH~---~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~  157 (286)
T cd07846          86 VLDDLEKYPN-----GLDESRVRKYLFQILRGIEFCHS---HNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVY  157 (286)
T ss_pred             HHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEECCCCcEEEEeeeeeeeccCCcccc
Confidence            9988775432     47899999999999999999995   4599999999999999999999999999876532     


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccc----cccc--
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESA----WEVF--  560 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~----~~~~--  560 (640)
                       ....+..|+|||++.      ....++.++|||||||++|||++|+.||..... ...+.+........    ....  
T Consensus       158 ~~~~~~~~y~aPE~~~------~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  230 (286)
T cd07846         158 TDYVATRWYRAPELLV------GDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSD-IDQLYHIIKCLGNLIPRHQEIFQK  230 (286)
T ss_pred             CcccceeeccCcHHhc------cccccCchHhHHHHHHHHHHHHcCCCCCCCCch-HHHHHHHHHHhCCCchhhHHHhcc
Confidence             123467899999752      223456789999999999999999999864321 11111111000000    0000  


Q ss_pred             --------chhhccChH----HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          561 --------DFELIMDKE----MEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       561 --------d~~~~~~~~----~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                              .+.......    .......+.+++.+||+.+|++||++.++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  282 (286)
T cd07846         231 NPLFAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLH  282 (286)
T ss_pred             chHhhccccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhc
Confidence                    000000000    0122346788899999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=6.4e-34  Score=293.19  Aligned_cols=248  Identities=20%  Similarity=0.368  Sum_probs=186.0

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccccc-------hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERKK-------KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~-------~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .+.||+|+||.||+|... +++.||||.++....       ...+..|++++++++|+||+++++++...+..++||||+
T Consensus         5 ~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~   84 (298)
T cd07841           5 GKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVFEFM   84 (298)
T ss_pred             eeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEEccc
Confidence            457999999999999964 688999999875422       234567899999999999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-  488 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-  488 (640)
                       +|+|.+++....    ..+++..+..++.|+++||+|||+   .+|+|+||||+||+++.++.+||+|||+++..... 
T Consensus        85 -~~~L~~~i~~~~----~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~  156 (298)
T cd07841          85 -ETDLEKVIKDKS----IVLTPADIKSYMLMTLRGLEYLHS---NWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPN  156 (298)
T ss_pred             -CCCHHHHHhccC----CCCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCChhhEEEcCCCCEEEccceeeeeccCCC
Confidence             899999997543    258999999999999999999995   45999999999999999999999999998876432 


Q ss_pred             -----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHH---hhcc-cccc--
Q 006559          489 -----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQM---MGQD-ESAW--  557 (640)
Q Consensus       489 -----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~---~~~~-~~~~--  557 (640)
                           ...+..|+|||.+.      ....++.++|||||||++|||++|.+||.... ......+.   .... ...+  
T Consensus       157 ~~~~~~~~~~~y~aPE~~~------~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  229 (298)
T cd07841         157 RKMTHQVVTRWYRAPELLF------GARHYGVGVDMWSVGCIFAELLLRVPFLPGDS-DIDQLGKIFEALGTPTEENWPG  229 (298)
T ss_pred             ccccccccceeeeCHHHHh------CCCCCCcHHHHHHHHHHHHHHHcCCccccCCc-cHHHHHHHHHHcCCCchhhhhh
Confidence                 12356799999652      23456789999999999999999987776432 11111111   1000 0000  


Q ss_pred             -----cccchhhcc----ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          558 -----EVFDFELIM----DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       558 -----~~~d~~~~~----~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                           .........    .........++.+++.+||+.+|++|||+.|+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~  281 (298)
T cd07841         230 VTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALE  281 (298)
T ss_pred             cccccccccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhh
Confidence                 000000000    0001122356788899999999999999999987

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=7.4e-34  Score=291.69  Aligned_cols=249  Identities=20%  Similarity=0.332  Sum_probs=183.4

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||.||+|+.. +++.||+|.+....   ....+.+|++++++++|+||+++++++...+..++||||++ ++
T Consensus        10 ~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~   88 (291)
T cd07844          10 LDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEYLD-TD   88 (291)
T ss_pred             EEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEecCC-CC
Confidence            467999999999999965 67899999986542   23456679999999999999999999999999999999998 49


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------  487 (640)
                      |.+++.....    .+++.....++.|+++||.|||+   .+|+||||||+||+++.++.+||+|||+++....      
T Consensus        89 L~~~~~~~~~----~~~~~~~~~~~~ql~~al~~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~  161 (291)
T cd07844          89 LKQYMDDCGG----GLSMHNVRLFLFQLLRGLAYCHQ---RRVLHRDLKPQNLLISERGELKLADFGLARAKSVPSKTYS  161 (291)
T ss_pred             HHHHHHhCCC----CCCHHHHHHHHHHHHHHHHHHHh---CCeecccCCHHHEEEcCCCCEEECccccccccCCCCcccc
Confidence            9998875432    57889999999999999999994   5599999999999999999999999999865431      


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHH---HHhhc-cccccc-----
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWV---QMMGQ-DESAWE-----  558 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~---~~~~~-~~~~~~-----  558 (640)
                      ....+..|+|||++.+      ...++.++|||||||++|||++|+.||.........+.   +.... ....+.     
T Consensus       162 ~~~~~~~~~aPE~~~~------~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (291)
T cd07844         162 NEVVTLWYRPPDVLLG------STEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSN  235 (291)
T ss_pred             ccccccccCCcHHhhc------CcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhc
Confidence            1224667999996532      23467899999999999999999999965431111110   00000 000000     


Q ss_pred             --ccc--hhhccChHHH------HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          559 --VFD--FELIMDKEME------EEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       559 --~~d--~~~~~~~~~~------~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                        ...  ..........      ....++.+++.+|++.+|++||++.++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~  287 (291)
T cd07844         236 PEFKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMK  287 (291)
T ss_pred             cccccccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhc
Confidence              000  0000000000      01145678889999999999999998864

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=5.9e-34  Score=286.60  Aligned_cols=236  Identities=25%  Similarity=0.353  Sum_probs=185.1

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc-------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .+.||+|+||.||+|... ++..|++|.+....       ..+.+..|+.++++++|+||+++++++...+..++||||+
T Consensus         5 ~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~   84 (258)
T cd06632           5 GELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFLELV   84 (258)
T ss_pred             cceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEEEec
Confidence            467999999999999975 78899999886432       2356778999999999999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--  487 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--  487 (640)
                      ++++|.+++....     ++++..+..++.|++.||+|||+   .+|+|+||+|+||+++.++.+||+|||++.....  
T Consensus        85 ~~~~L~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~  156 (258)
T cd06632          85 PGGSLAKLLKKYG-----SFPEPVIRLYTRQILLGLEYLHD---RNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFS  156 (258)
T ss_pred             CCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEccCccceeccccc
Confidence            9999999997542     47899999999999999999995   4599999999999999999999999999876432  


Q ss_pred             ---CccccccccCCccccCCCCccccC-CCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQR-KFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~-~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                         ...++..|++||...       .. .++.++|||||||++|||++|+.||.....  ...............     
T Consensus       157 ~~~~~~~~~~y~~pe~~~-------~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~--~~~~~~~~~~~~~~~-----  222 (258)
T cd06632         157 FAKSFKGSPYWMAPEVIA-------QQGGYGLAADIWSLGCTVLEMATGKPPWSQLEG--VAAVFKIGRSKELPP-----  222 (258)
T ss_pred             cccccCCCcceeCHHHhc-------CCCCCCchhhhHHHHHHHHHHHhCCCCcccCcH--HHHHHHHHhcccCCC-----
Confidence               233567799999642       22 367889999999999999999999975431  111111111000000     


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                        ...   ....++.+++.+||+.+|++||++.+++.
T Consensus       223 --~~~---~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  254 (258)
T cd06632         223 --IPD---HLSDEAKDFILKCLQRDPSLRPTAAELLE  254 (258)
T ss_pred             --cCC---CcCHHHHHHHHHHhhcCcccCcCHHHHhc
Confidence              011   11234566788899999999999999874

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=4.6e-34  Score=292.73  Aligned_cols=249  Identities=21%  Similarity=0.296  Sum_probs=178.6

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhc---cCCCcccceeEEEEc-----CCeEEE
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGG---LRHSNIVSIRAYCNG-----KDELFL  404 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~---l~H~niv~l~~~~~~-----~~~~~l  404 (640)
                      .+.||+|+||.||+|+.. +++.||+|.++...    ....+.+|+++++.   ++||||+++++++..     ....++
T Consensus         5 ~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~~~l   84 (288)
T cd07863           5 VAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETKVTL   84 (288)
T ss_pred             eeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCceEEE
Confidence            457999999999999864 68899999987531    22345566665554   479999999998864     245899


Q ss_pred             EEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          405 VYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      ||||++ ++|.+++.....   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++.
T Consensus        85 v~e~~~-~~l~~~~~~~~~---~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dikp~Nili~~~~~~kl~dfg~~~~  157 (288)
T cd07863          85 VFEHVD-QDLRTYLDKVPP---PGLPAETIKDLMRQFLRGLDFLHA---NCIVHRDLKPENILVTSGGQVKLADFGLARI  157 (288)
T ss_pred             EEcccc-cCHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEECccCcccc
Confidence            999998 489888875431   247899999999999999999995   4599999999999999999999999999876


Q ss_pred             cCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc--hHHHHHHhhccc---
Q 006559          485 FHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG--IVKWVQMMGQDE---  554 (640)
Q Consensus       485 ~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~--~~~~~~~~~~~~---  554 (640)
                      ...     ...++..|+|||++.       ...++.++|||||||++|||++|++||......  ..+.........   
T Consensus       158 ~~~~~~~~~~~~~~~y~aPE~~~-------~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~  230 (288)
T cd07863         158 YSCQMALTPVVVTLWYRAPEVLL-------QSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDD  230 (288)
T ss_pred             ccCcccCCCccccccccCchHhh-------CCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCCChhh
Confidence            542     234577899999753       345778999999999999999999998643221  111111111000   


Q ss_pred             cccc------ccchhhcc--ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          555 SAWE------VFDFELIM--DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       555 ~~~~------~~d~~~~~--~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ....      .+......  .....+...++.+++.+|++.||++|||+.+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~  284 (288)
T cd07863         231 WPRDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQ  284 (288)
T ss_pred             CcccccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence            0000      00000000  0000112345678888999999999999998864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=3.5e-34  Score=295.10  Aligned_cols=236  Identities=17%  Similarity=0.281  Sum_probs=184.4

Q ss_pred             ccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          339 ELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ..||+|+||.||++.. .++..||+|.+...  ...+.+.+|+.+++.++||||+++++++...+..++||||+++++|.
T Consensus        27 ~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~L~  106 (297)
T cd06659          27 IKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGALT  106 (297)
T ss_pred             hhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCCCCHH
Confidence            3699999999999985 46889999998644  33456778899999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------Cc
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------PF  489 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------~~  489 (640)
                      +++...      .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++....      ..
T Consensus       107 ~~~~~~------~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~  177 (297)
T cd06659         107 DIVSQT------RLNEEQIATVCESVLQALCYLHS---QGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSL  177 (297)
T ss_pred             HHHhhc------CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHeEEccCCcEEEeechhHhhcccccccccce
Confidence            987542      47899999999999999999994   4599999999999999999999999999875432      23


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChH
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKE  569 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  569 (640)
                      .++..|+|||++       ....++.++|||||||++|||++|+.||......  ...+........      ...... 
T Consensus       178 ~~~~~y~aPE~~-------~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~--~~~~~~~~~~~~------~~~~~~-  241 (297)
T cd06659         178 VGTPYWMAPEVI-------SRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPV--QAMKRLRDSPPP------KLKNAH-  241 (297)
T ss_pred             ecCccccCHHHH-------ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHhccCCC------CccccC-
Confidence            457789999965       3345678999999999999999999998643211  111111111000      000001 


Q ss_pred             HHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          570 MEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       570 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                        .....+.+++..||+.+|++||++.++++.
T Consensus       242 --~~~~~l~~~i~~~l~~~P~~Rps~~~ll~~  271 (297)
T cd06659         242 --KISPVLRDFLERMLTREPQERATAQELLDH  271 (297)
T ss_pred             --CCCHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence              112345677888999999999999999873

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=3.9e-34  Score=292.96  Aligned_cols=247  Identities=21%  Similarity=0.290  Sum_probs=184.0

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc-chHHHHHHHHHHhcc-CCCcccceeEEEE-----cCCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-KKREVDEWLRVIGGL-RHSNIVSIRAYCN-----GKDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-~~~~~~~e~~~l~~l-~H~niv~l~~~~~-----~~~~~~lV~Ey~  409 (640)
                      .+.||+|+||.||+++. .+++.+|+|.+.... ...++..|+.+++++ +||||+++++++.     ..+..++||||+
T Consensus        23 ~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~  102 (286)
T cd06638          23 IETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQLWLVLELC  102 (286)
T ss_pred             eeeeccCCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCCCCeEEEEEeec
Confidence            46799999999999985 457889999886542 345677888999998 6999999999884     345689999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--  487 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--  487 (640)
                      ++|+|.++++.... ....+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+++....  
T Consensus       103 ~~~~L~~~l~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~  178 (286)
T cd06638         103 NGGSVTDLVKGFLK-RGERMEEPIIAYILHEALMGLQHLHV---NKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTR  178 (286)
T ss_pred             CCCCHHHHHHHhhc-cCccccHHHHHHHHHHHHHHHHHHHh---CCccccCCCHHhEEECCCCCEEEccCCceeecccCC
Confidence            99999998764321 12257888999999999999999994   4599999999999999999999999999876532  


Q ss_pred             ----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchh
Q 006559          488 ----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       488 ----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                          ...++..|+|||++....  .....++.++|||||||++|||+||+.|+..... .....+. ...      ..+.
T Consensus       179 ~~~~~~~~~~~y~aPE~~~~~~--~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~-~~~~~~~-~~~------~~~~  248 (286)
T cd06638         179 LRRNTSVGTPFWMAPEVIACEQ--QLDSTYDARCDVWSLGITAIELGDGDPPLADLHP-MRALFKI-PRN------PPPT  248 (286)
T ss_pred             CccccccCCCcccChhhhchhh--hccccccchhhhhhHHHHHHHHhcCCCCCCCCch-hHHHhhc-ccc------CCCc
Confidence                123577899999753211  1234577899999999999999999999864321 1111110 000      0000


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                      .....   ....++.+++.+||+.+|++||++.|+++.
T Consensus       249 ~~~~~---~~~~~~~~li~~~l~~~p~~Rps~~ell~~  283 (286)
T cd06638         249 LHQPE---LWSNEFNDFIRKCLTKDYEKRPTVSDLLQH  283 (286)
T ss_pred             ccCCC---CcCHHHHHHHHHHccCCcccCCCHHHHhhc
Confidence            10011   112346778889999999999999999764

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=6e-34  Score=289.78  Aligned_cols=244  Identities=22%  Similarity=0.374  Sum_probs=186.9

Q ss_pred             hccccccCcceEEEEEeC------CCcEEEEEEeccccc---hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVLD------GGDVVVVKRIRERKK---KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~------~~~~vavK~l~~~~~---~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      ...||+|+||.||+|+..      +...|++|.+.....   ..++..|++++++++|+||+++++++...+..++||||
T Consensus        10 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   89 (275)
T cd05046          10 ITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHYMILEY   89 (275)
T ss_pred             eeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcceEEEEe
Confidence            456999999999999864      245789998865533   35688899999999999999999999988999999999


Q ss_pred             cCCCCHHHhhccCCCCC----CCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          409 LPHGSLHSLLHGSRGPG----RMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~----~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      +++|+|.+++.......    ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.++++|||+++.
T Consensus        90 ~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~---~~i~H~dlkp~Nili~~~~~~~l~~~~~~~~  166 (275)
T cd05046          90 TDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSN---ARFVHRDLAARNCLVSSQREVKVSLLSLSKD  166 (275)
T ss_pred             cCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhh---cCcccCcCccceEEEeCCCcEEEcccccccc
Confidence            99999999997544111    1258999999999999999999995   4599999999999999999999999999865


Q ss_pred             cCC-------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhccccc
Q 006559          485 FHT-------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESA  556 (640)
Q Consensus       485 ~~~-------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~  556 (640)
                      ...       ....+..|+|||.+       ....++.++|||||||++|||++ |..||.....  ...+.........
T Consensus       167 ~~~~~~~~~~~~~~~~~y~~PE~~-------~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~--~~~~~~~~~~~~~  237 (275)
T cd05046         167 VYNSEYYKLRNALIPLRWLAPEAV-------QEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSD--EEVLNRLQAGKLE  237 (275)
T ss_pred             cCcccccccCCceeEEeecChhhh-------ccCCCCchhhHHHHHHHHHHHHhCCCCCccccch--HHHHHHHHcCCcC
Confidence            422       12235569999964       23345678999999999999999 7888853211  1111111111100


Q ss_pred             ccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 006559          557 WEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIE  603 (640)
Q Consensus       557 ~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~  603 (640)
                      +.       ...   .....+.+++.+||+.+|++||++.+++..|.
T Consensus       238 ~~-------~~~---~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~  274 (275)
T cd05046         238 LP-------VPE---GCPSRLYKLMTRCWAVNPKDRPSFSELVSALG  274 (275)
T ss_pred             CC-------CCC---CCCHHHHHHHHHHcCCCcccCCCHHHHHHHhc
Confidence            10       011   12235777888999999999999999999875

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=5.5e-34  Score=286.81  Aligned_cols=237  Identities=22%  Similarity=0.367  Sum_probs=187.3

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+++. .++..||+|.+...    ...+++.+|++++++++||||+++.+++...+..++||||++++
T Consensus         5 ~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (256)
T cd08218           5 VKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDYCEGG   84 (256)
T ss_pred             EEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEecCCCC
Confidence            56799999999999985 46789999998643    23356788999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.+++.....   ..+++..++.++.|++.||+|||+   .+++|+||+|+||+++.++.++|+|||++......    
T Consensus        85 ~l~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~  158 (256)
T cd08218          85 DLYKKINAQRG---VLFPEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELA  158 (256)
T ss_pred             cHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCEEEeeccceeecCcchhhh
Confidence            99999875431   247889999999999999999995   46999999999999999999999999998766432    


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                        ..++..|+|||++       .....+.++|||||||+++||+||+.||.....  ...+....... .     +.  .
T Consensus       159 ~~~~~~~~~~~pe~~-------~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~--~~~~~~~~~~~-~-----~~--~  221 (256)
T cd08218         159 RTCIGTPYYLSPEIC-------ENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNM--KNLVLKIIRGS-Y-----PP--V  221 (256)
T ss_pred             hhccCCccccCHHHh-------CCCCCCCccchhHHHHHHHHHHcCCCCccCCCH--HHHHHHHhcCC-C-----CC--C
Confidence              2346679999964       334567899999999999999999999874322  11121111110 0     00  0


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .   .....++.+++.+||+.+|++||+|.+|++
T Consensus       222 ~---~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~  252 (256)
T cd08218         222 S---SHYSYDLRNLVSQLFKRNPRDRPSVNSILE  252 (256)
T ss_pred             c---ccCCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence            1   122345677888899999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=6.6e-34  Score=307.30  Aligned_cols=180  Identities=18%  Similarity=0.241  Sum_probs=152.6

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHH
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~  416 (640)
                      .+.||+|+||.||+++.. .++.||||....    ..+.+|++++++++|+|||++++++...+..++||||+. ++|.+
T Consensus       174 ~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~----~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~~-~~L~~  248 (461)
T PHA03211        174 HRALTPGSEGCVFESSHPDYPQRVVVKAGWY----ASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYR-SDLYT  248 (461)
T ss_pred             EEEEccCCCeEEEEEEECCCCCEEEEecccc----cCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEccC-CCHHH
Confidence            467999999999999965 467899996432    235678999999999999999999999999999999995 78988


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--------C
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--------P  488 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--------~  488 (640)
                      ++....    ..++|..++.++.|+++||+|||+   .+||||||||+|||++.++.+||+|||+++....        .
T Consensus       249 ~l~~~~----~~l~~~~~~~i~~qi~~aL~yLH~---~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~  321 (461)
T PHA03211        249 YLGARL----RPLGLAQVTAVARQLLSAIDYIHG---EGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYG  321 (461)
T ss_pred             HHHhcC----CCCCHHHHHHHHHHHHHHHHHHHH---CCEEECcCCHHHEEECCCCCEEEcccCCceecccccccccccc
Confidence            886532    258999999999999999999995   4599999999999999999999999999876532        1


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCC
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAK  536 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~  536 (640)
                      ..+|..|+|||++       ....++.++|||||||++|||++|..|+
T Consensus       322 ~~GT~~Y~APE~~-------~~~~~~~~sDvwSlGviL~El~~g~~~l  362 (461)
T PHA03211        322 IAGTVDTNAPEVL-------AGDPYTPSVDIWSAGLVIFEAAVHTASL  362 (461)
T ss_pred             cCCCcCCcCHHHH-------cCCCCCchHHHHHHHHHHHHHHHcCCCc
Confidence            2468899999965       3345778999999999999999987654

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=2.2e-34  Score=290.09  Aligned_cols=241  Identities=27%  Similarity=0.445  Sum_probs=185.7

Q ss_pred             hccccccCcceEEEEEeCC-CcEEEEEEeccccchH----HHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLDG-GDVVVVKRIRERKKKR----EVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~~~~~----~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||+||+++... ++.+|+|.+.......    ....|+..+++++||||+++++++......++||||++++
T Consensus         4 ~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~~~~   83 (260)
T PF00069_consen    4 VKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYCPGG   83 (260)
T ss_dssp             EEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEETTE
T ss_pred             eEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccccccccccccccccccccccccccccccc
Confidence            4679999999999999655 5689999998763222    2345889999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC------
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH------  486 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~------  486 (640)
                      +|.+++....     .+++..+..++.|+++||+|||+.   +|+|+||||+||++++++.++|+|||.+....      
T Consensus        84 ~L~~~l~~~~-----~~~~~~~~~~~~qi~~~L~~Lh~~---~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~  155 (260)
T PF00069_consen   84 SLQDYLQKNK-----PLSEEEILKIAYQILEALAYLHSK---GIVHRDIKPENILLDENGEVKLIDFGSSVKLSENNENF  155 (260)
T ss_dssp             BHHHHHHHHS-----SBBHHHHHHHHHHHHHHHHHHHHT---TEEESSBSGGGEEESTTSEEEESSGTTTEESTSTTSEB
T ss_pred             cccccccccc-----cccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccc
Confidence            9999998322     589999999999999999999954   59999999999999999999999999987521      


Q ss_pred             CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHHHHHHhhcccccccccchhhc
Q 006559          487 TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       487 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                      .....+..|+|||+..      ....++.++||||+|+++|||++|+.||..... +............     ......
T Consensus       156 ~~~~~~~~y~aPE~~~------~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~-----~~~~~~  224 (260)
T PF00069_consen  156 NPFVGTPEYMAPEVLQ------QGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKILKRP-----LPSSSQ  224 (260)
T ss_dssp             SSSSSSGGGSCHHHHT------TTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHHHHTH-----HHHHTT
T ss_pred             cccccccccccccccc------ccccccccccccccccccccccccccccccccchhhhhhhhhccccc-----cccccc
Confidence            2334578899999642      245678899999999999999999999975411 1111111100000     000000


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                         ........+.+++..||+.||++||++.++++
T Consensus       225 ---~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~  256 (260)
T PF00069_consen  225 ---QSREKSEELRDLIKKMLSKDPEQRPSAEELLK  256 (260)
T ss_dssp             ---SHTTSHHHHHHHHHHHSSSSGGGSTTHHHHHT
T ss_pred             ---ccchhHHHHHHHHHHHccCChhHCcCHHHHhc
Confidence               00011256788888999999999999999874

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-36  Score=278.32  Aligned_cols=238  Identities=19%  Similarity=0.258  Sum_probs=182.8

Q ss_pred             HhhccccccCcceEEEEE-eCCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          336 SSAELLGKGCVGATYKVV-LDGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       336 ~~~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ...++||+|.|+.||++. .+.|+.+|+|.+..+    ...+++++|+++.+.|+|||||+|.+.+.+....|||+|+|.
T Consensus        14 ~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvFe~m~   93 (355)
T KOG0033|consen   14 DVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVT   93 (355)
T ss_pred             hHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEEeccc
Confidence            346789999999999987 466888888887644    345778899999999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC---CCCeEEccCCcccccCC
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ---LGNACISDIGVHQLFHT  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~---~~~~kl~DfGl~~~~~~  487 (640)
                      +|+|..-+-..     ..+++...-.++.||.++|.|+|.   .+|||||+||+|+||..   .--+|++|||++..+..
T Consensus        94 G~dl~~eIV~R-----~~ySEa~aSH~~rQiLeal~yCH~---n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~  165 (355)
T KOG0033|consen   94 GGELFEDIVAR-----EFYSEADASHCIQQILEALAYCHS---NGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVND  165 (355)
T ss_pred             chHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHh---cCceeccCChhheeeeeccCCCceeecccceEEEeCC
Confidence            99997544321     245666777789999999999995   45999999999999953   34689999999988764


Q ss_pred             -----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC-CcchHHHHHHhhcccccccccc
Q 006559          488 -----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG-ELGIVKWVQMMGQDESAWEVFD  561 (640)
Q Consensus       488 -----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~-~~~~~~~~~~~~~~~~~~~~~d  561 (640)
                           ...+|++|||||++       ....|+..+|||+-||+||-|+.|.+||.++ ...+.+-+....        .|
T Consensus       166 g~~~~G~~GtP~fmaPEvv-------rkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~rlye~I~~g~--------yd  230 (355)
T KOG0033|consen  166 GEAWHGFAGTPGYLSPEVL-------KKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYEQIKAGA--------YD  230 (355)
T ss_pred             ccccccccCCCcccCHHHh-------hcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHHHHHHHHhccc--------cC
Confidence                 24679999999975       4456678899999999999999999999863 322322111100        11


Q ss_pred             hhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 006559          562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVH  599 (640)
Q Consensus       562 ~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~  599 (640)
                      ..-   ++++....+..+++.+|+..||++|.|+.|++
T Consensus       231 ~~~---~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL  265 (355)
T KOG0033|consen  231 YPS---PEWDTVTPEAKSLIRRMLTVNPKKRITADEAL  265 (355)
T ss_pred             CCC---cccCcCCHHHHHHHHHHhccChhhhccHHHHh
Confidence            111   11222223345566779999999999988765

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=3.4e-34  Score=296.42  Aligned_cols=241  Identities=18%  Similarity=0.232  Sum_probs=186.5

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||++... .++.||+|.+....     ....+.+|+++++.++||||+++++.+...+..++||||+++
T Consensus         6 ~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g   85 (305)
T cd05609           6 IKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVMEYVEG   85 (305)
T ss_pred             eeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEecCCC
Confidence            467999999999999864 46789999987542     234567889999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....     .+++.....++.|++.||+|||+   .+++||||||+||+++.++.+||+|||+++....    
T Consensus        86 ~~L~~~l~~~~-----~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~  157 (305)
T cd05609          86 GDCATLLKNIG-----ALPVDMARMYFAETVLALEYLHN---YGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTT  157 (305)
T ss_pred             CcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCchHHEEECCCCCEEEeeCCCccccCcCccc
Confidence            99999997543     57888999999999999999995   4599999999999999999999999999864210    


Q ss_pred             -----------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHh
Q 006559          488 -----------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMM  550 (640)
Q Consensus       488 -----------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~  550 (640)
                                       ...++..|+|||.+       ....++.++|||||||++|||+||+.||.+....  ++.+..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~--~~~~~~  228 (305)
T cd05609         158 NLYEGHIEKDTREFLDKQVCGTPEYIAPEVI-------LRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPE--ELFGQV  228 (305)
T ss_pred             cccccccccchhhccccCCccCccccCchhc-------cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHH
Confidence                             11235679999964       3345778999999999999999999999743221  111111


Q ss_pred             hcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 006559          551 GQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIED  604 (640)
Q Consensus       551 ~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~  604 (640)
                      .....    ..+..  .   .....++.+++.+||+.+|++||++.++.+.|+.
T Consensus       229 ~~~~~----~~~~~--~---~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~  273 (305)
T cd05609         229 ISDDI----EWPEG--D---EALPADAQDLISRLLRQNPLERLGTGGAFEVKQH  273 (305)
T ss_pred             Hhccc----CCCCc--c---ccCCHHHHHHHHHHhccChhhccCccCHHHHHhC
Confidence            11100    00000  0   0123346778888999999999998877777766

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=4.8e-34  Score=300.35  Aligned_cols=247  Identities=19%  Similarity=0.293  Sum_probs=181.3

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcC------CeEEEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGK------DELFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------~~~~lV~  406 (640)
                      .+.||+|+||.||+|.. .++..||||++....    ..+.+.+|++++++++||||+++++++...      ...|+++
T Consensus        20 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~   99 (343)
T cd07878          20 LTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENFNEVYLVT   99 (343)
T ss_pred             heecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccccCcEEEEe
Confidence            46799999999999985 567889999987541    234566899999999999999999887543      3579999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||+ +++|.+++...      .+++..+..++.|++.||+|||+   .+|+||||||+|||+++++.+||+|||+++...
T Consensus       100 ~~~-~~~l~~~~~~~------~l~~~~~~~i~~qi~~aL~~LH~---~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~  169 (343)
T cd07878         100 NLM-GADLNNIVKCQ------KLSDEHVQFLIYQLLRGLKYIHS---AGIIHRDLKPSNVAVNEDCELRILDFGLARQAD  169 (343)
T ss_pred             ecC-CCCHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHH---CCeecccCChhhEEECCCCCEEEcCCccceecC
Confidence            988 77998887642      48899999999999999999995   459999999999999999999999999988764


Q ss_pred             C---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc--hHHHHHHhhccc-ccc-cc
Q 006559          487 T---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG--IVKWVQMMGQDE-SAW-EV  559 (640)
Q Consensus       487 ~---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~--~~~~~~~~~~~~-~~~-~~  559 (640)
                      .   ...++..|+|||++.+      ...++.++|||||||++|||++|+.||......  +..+........ ... .+
T Consensus       170 ~~~~~~~~t~~y~aPE~~~~------~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (343)
T cd07878         170 DEMTGYVATRWYRAPEIMLN------WMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSPEVLKKI  243 (343)
T ss_pred             CCcCCccccccccCchHhcC------CccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhc
Confidence            3   2356889999997532      235678999999999999999999999753211  111111111100 000 00


Q ss_pred             cc-------hhh--ccChHHH----HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 FD-------FEL--IMDKEME----EEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 ~d-------~~~--~~~~~~~----~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..       ..+  .......    .....+.+++.+|++.||++|||+.|++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~  297 (343)
T cd07878         244 SSEHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALA  297 (343)
T ss_pred             chhhHHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            00       000  0000000    01124678888999999999999999974

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=7.5e-34  Score=288.12  Aligned_cols=244  Identities=20%  Similarity=0.326  Sum_probs=185.5

Q ss_pred             hccccccCcceEEEEEeCC--CcEEEEEEecccc------------chHHHHHHHHHHh-ccCCCcccceeEEEEcCCeE
Q 006559          338 AELLGKGCVGATYKVVLDG--GDVVVVKRIRERK------------KKREVDEWLRVIG-GLRHSNIVSIRAYCNGKDEL  402 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~--~~~vavK~l~~~~------------~~~~~~~e~~~l~-~l~H~niv~l~~~~~~~~~~  402 (640)
                      .+.||+|+||.||+|....  +..+|+|.+....            ...++..|+.++. .++||||+++++++...+..
T Consensus         5 ~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~   84 (269)
T cd08528           5 LEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLENDRL   84 (269)
T ss_pred             hhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEccCCeE
Confidence            5679999999999999765  6789999875321            1133556777665 47999999999999999999


Q ss_pred             EEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcc
Q 006559          403 FLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVH  482 (640)
Q Consensus       403 ~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~  482 (640)
                      ++||||+++++|.+++..... ....+++..++.++.|++.||.|||+  ..+++|+||+|+||+++.++.+||+|||++
T Consensus        85 ~lv~e~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~lh~--~~~i~H~dl~~~nil~~~~~~~~l~dfg~~  161 (269)
T cd08528          85 YIVMDLIEGAPLGEHFNSLKE-KKQRFTEERIWNIFVQMVLALRYLHK--EKRIVHRDLTPNNIMLGEDDKVTITDFGLA  161 (269)
T ss_pred             EEEEecCCCCcHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHhcc--CCceeecCCCHHHEEECCCCcEEEecccce
Confidence            999999999999998753221 12358889999999999999999995  245999999999999999999999999998


Q ss_pred             cccCCC-----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccc
Q 006559          483 QLFHTP-----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAW  557 (640)
Q Consensus       483 ~~~~~~-----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  557 (640)
                      ......     ..++..|++||.+       ....++.++||||||+++|||++|+.||.....  ........... ..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~Pe~~-------~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~--~~~~~~~~~~~-~~  231 (269)
T cd08528         162 KQKQPESKLTSVVGTILYSCPEIV-------KNEPYGEKADVWAFGCILYQMCTLQPPFYSTNM--LSLATKIVEAV-YE  231 (269)
T ss_pred             eecccccccccccCcccCcChhhh-------cCCCCchHHHHHHHHHHHHHHHhCCCcccccCH--HHHHHHHhhcc-CC
Confidence            765432     3346789999964       334577899999999999999999999864322  22222211110 00


Q ss_pred             cccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 006559          558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIE  603 (640)
Q Consensus       558 ~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~  603 (640)
                      ..      ..   ......+.+++.+||+.||++||++.||..+++
T Consensus       232 ~~------~~---~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~  268 (269)
T cd08528         232 PL------PE---GMYSEDVTDVITSCLTPDAEARPDIIQVSAMIS  268 (269)
T ss_pred             cC------Cc---ccCCHHHHHHHHHHCCCCCccCCCHHHHHHHhc
Confidence            00      00   012235677888899999999999999999885

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=9.8e-34  Score=285.08  Aligned_cols=237  Identities=22%  Similarity=0.379  Sum_probs=184.2

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEc-CCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNG-KDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~-~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+++.. +++.||+|++...    ...+.+.+|++++++++|+|++++.+.+.. ....++||||+++
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~   84 (257)
T cd08223           5 VRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMGFCEG   84 (257)
T ss_pred             EEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEecccCC
Confidence            467999999999999854 5778999998643    223457788999999999999999998764 4468999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---  488 (640)
                      ++|.+++.....   ..+++.++..++.|++.|++|||+   .+|+||||||+||+++.++.++|+|||+++.....   
T Consensus        85 ~~l~~~l~~~~~---~~l~~~~~~~~~~~l~~~l~~lH~---~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~~  158 (257)
T cd08223          85 GDLYHKLKEQKG---KLLPENQVVEWFVQIAMALQYLHE---KHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDM  158 (257)
T ss_pred             CcHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCchhEEEecCCcEEEecccceEEecccCCc
Confidence            999999975421   257899999999999999999994   56999999999999999999999999998765421   


Q ss_pred             ---ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          489 ---FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       489 ---~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                         ..++..|+|||+.       ....++.++|||||||+++||++|+.||...+.  ..+....... ..     +.  
T Consensus       159 ~~~~~~~~~y~aPE~~-------~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~--~~~~~~~~~~-~~-----~~--  221 (257)
T cd08223         159 ASTLIGTPYYMSPELF-------SNKPYNYKSDVWALGCCVYEMATLKHAFNAKDM--NSLVYRIIEG-KL-----PP--  221 (257)
T ss_pred             cccccCCcCccChhHh-------cCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH--HHHHHHHHhc-CC-----CC--
Confidence               2346789999964       344567899999999999999999999875332  1221111111 00     00  


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..   ......+.+++.+|++.+|++||++.++++
T Consensus       222 ~~---~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  253 (257)
T cd08223         222 MP---KDYSPELGELIATMLSKRPEKRPSVKSILR  253 (257)
T ss_pred             Cc---cccCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence            01   122235677888899999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=1.2e-33  Score=292.67  Aligned_cols=241  Identities=22%  Similarity=0.341  Sum_probs=185.6

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..+.||+|+||.||+|+.. +++.||+|.+...     ...+++.+|+++++.++||||+++.++|...+..++||||++
T Consensus        19 ~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   98 (307)
T cd06607          19 DLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVMEYCL   98 (307)
T ss_pred             hheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEHHhhC
Confidence            3567999999999999864 6889999988643     122457789999999999999999999999999999999997


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--C
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--P  488 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--~  488 (640)
                       |++.+++....    .++++..+..++.|++.||.|||+   .+|+||||+|+||++++++.+||+|||++.....  .
T Consensus        99 -g~l~~~~~~~~----~~l~~~~~~~~~~ql~~~L~~LH~---~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~~  170 (307)
T cd06607          99 -GSASDILEVHK----KPLQEVEIAAICHGALQGLAYLHS---HERIHRDIKAGNILLTEPGTVKLADFGSASLVSPANS  170 (307)
T ss_pred             -CCHHHHHHHcc----cCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcccEEECCCCCEEEeecCcceecCCCCC
Confidence             67777765432    258899999999999999999995   4599999999999999999999999999876543  2


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ...+..|+|||++...    ....++.++|||||||++|||+||+.||.......  ........+.      +.. .  
T Consensus       171 ~~~~~~y~aPE~~~~~----~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~~--~~~~~~~~~~------~~~-~--  235 (307)
T cd06607         171 FVGTPYWMAPEVILAM----DEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS--ALYHIAQNDS------PTL-S--  235 (307)
T ss_pred             ccCCccccCceeeecc----CCCCCCcccchHHHHHHHHHHHcCCCCCCCccHHH--HHHHHhcCCC------CCC-C--
Confidence            3456789999975321    23457789999999999999999999986432111  1111111000      000 0  


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                       .......+.+++.+||+.+|++||+|.+++..
T Consensus       236 -~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  267 (307)
T cd06607         236 -SNDWSDYFRNFVDSCLQKIPQDRPSSEELLKH  267 (307)
T ss_pred             -chhhCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence             11233457788889999999999999999763

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=7.9e-34  Score=303.86  Aligned_cols=246  Identities=17%  Similarity=0.245  Sum_probs=181.8

Q ss_pred             hhccccccCcceEEEEEeCC---CcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          337 SAELLGKGCVGATYKVVLDG---GDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~---~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      ..+.||+|+||.||++...+   +..||||.+...   +...+|++++++++|||||++++++......++||||+. ++
T Consensus        96 i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~---~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~  171 (392)
T PHA03207         96 ILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG---KTPGREIDILKTISHRAIINLIHAYRWKSTVCMVMPKYK-CD  171 (392)
T ss_pred             EEEeecCCCCeEEEEEEEcCCccceeEEEEecccc---ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEehhcC-CC
Confidence            35679999999999997543   467899987643   335678999999999999999999999999999999996 68


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------  487 (640)
                      |.+++....     .+++..++.++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....      
T Consensus       172 l~~~l~~~~-----~l~~~~~~~i~~ql~~aL~~LH~---~givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~  243 (392)
T PHA03207        172 LFTYVDRSG-----PLPLEQAITIQRRLLEALAYLHG---RGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQ  243 (392)
T ss_pred             HHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEcCCCCEEEccCccccccCccccccc
Confidence            888884332     58999999999999999999995   4599999999999999999999999999876532      


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-----hHHHHHHhhccccccc--
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-----IVKWVQMMGQDESAWE--  558 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-----~~~~~~~~~~~~~~~~--  558 (640)
                        ...+|..|+|||++       ....++.++|||||||++|||++|+.||......     +...++..........  
T Consensus       244 ~~~~~gt~~y~aPE~~-------~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~  316 (392)
T PHA03207        244 CYGWSGTLETNSPELL-------ALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQN  316 (392)
T ss_pred             ccccccccCccCHhHh-------cCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCc
Confidence              13468899999965       3345678999999999999999999998643221     1111111111000000  


Q ss_pred             --------------ccchhhccChHH--HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          559 --------------VFDFELIMDKEM--EEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       559 --------------~~d~~~~~~~~~--~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                                    ...+....+...  .....++.+++.+|+..||++||++.|++..
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~  375 (392)
T PHA03207        317 GSTNLCKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSL  375 (392)
T ss_pred             cchhHHHHHHhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhhC
Confidence                          000000000000  0112346677888999999999999998764

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=5.1e-34  Score=312.31  Aligned_cols=254  Identities=18%  Similarity=0.245  Sum_probs=179.2

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc-cchHHHHHHHHHHhccCC------CcccceeEEEEcC-CeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER-KKKREVDEWLRVIGGLRH------SNIVSIRAYCNGK-DELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H------~niv~l~~~~~~~-~~~~lV~E  407 (640)
                      ..++||+|+||+||+|+. ..++.||||+++.. ...++...|+++++.++|      .+++++.+++... ...|+|||
T Consensus       133 i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~~~~iv~~  212 (467)
T PTZ00284        133 ILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETGHMCIVMP  212 (467)
T ss_pred             EEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCCceEEEEEe
Confidence            356899999999999985 45788999999653 233445556666665544      5588888888764 57899999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC---------------
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG---------------  472 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~---------------  472 (640)
                      ++ +++|.+++....     .+++..+..|+.||+.||+|||+.  .+||||||||+|||++.++               
T Consensus       213 ~~-g~~l~~~l~~~~-----~l~~~~~~~i~~qi~~aL~yLH~~--~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~  284 (467)
T PTZ00284        213 KY-GPCLLDWIMKHG-----PFSHRHLAQIIFQTGVALDYFHTE--LHLMHTDLKPENILMETSDTVVDPVTNRALPPDP  284 (467)
T ss_pred             cc-CCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHhc--CCeecCCCCHHHEEEecCCcccccccccccCCCC
Confidence            88 678988887543     588999999999999999999952  4699999999999998765               


Q ss_pred             -CeEEccCCcccccC---CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHHHH
Q 006559          473 -NACISDIGVHQLFH---TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVKWV  547 (640)
Q Consensus       473 -~~kl~DfGl~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~~~  547 (640)
                       .+||+|||.+....   ....+|..|+|||++.       ...++.++|||||||++|||+||+.||..... .....+
T Consensus       285 ~~vkl~DfG~~~~~~~~~~~~~gt~~Y~APE~~~-------~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i  357 (467)
T PTZ00284        285 CRVRICDLGGCCDERHSRTAIVSTRHYRSPEVVL-------GLGWMYSTDMWSMGCIIYELYTGKLLYDTHDNLEHLHLM  357 (467)
T ss_pred             ceEEECCCCccccCccccccccCCccccCcHHhh-------cCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Confidence             49999999876532   2345688999999753       34577899999999999999999999975332 111111


Q ss_pred             -HHhhccccc----------ccc----------cchhhc----cChHHH--HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          548 -QMMGQDESA----------WEV----------FDFELI----MDKEME--EEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       548 -~~~~~~~~~----------~~~----------~d~~~~----~~~~~~--~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       +..+.....          ..+          .++...    ......  .....+.+++..||..||++|||+.|+++
T Consensus       358 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~  437 (467)
T PTZ00284        358 EKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTT  437 (467)
T ss_pred             HHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhc
Confidence             111100000          000          000000    000000  01235678999999999999999999975


Q ss_pred             --HHHHh
Q 006559          601 --MIEDI  605 (640)
Q Consensus       601 --~L~~i  605 (640)
                        .+.+.
T Consensus       438 Hp~~~~~  444 (467)
T PTZ00284        438 HPYVLKY  444 (467)
T ss_pred             Ccccccc
Confidence              45443

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=5.9e-35  Score=304.41  Aligned_cols=236  Identities=22%  Similarity=0.363  Sum_probs=183.9

Q ss_pred             HhhccccccCcceEEEEEeC-CCcEEE---EEEec---cccchHHHHHHHHHHhccCCCcccceeEEEEcCCe--EEEEE
Q 006559          336 SSAELLGKGCVGATYKVVLD-GGDVVV---VKRIR---ERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDE--LFLVY  406 (640)
Q Consensus       336 ~~~~~iG~G~fg~Vy~~~~~-~~~~va---vK~l~---~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~--~~lV~  406 (640)
                      .+.++||+|+|-+||||... .|..||   ||.-.   .....+.|.+|+++|+.|+|||||+++.++.+...  .-+|+
T Consensus        43 k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iT  122 (632)
T KOG0584|consen   43 KFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFIT  122 (632)
T ss_pred             ehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeee
Confidence            34678999999999999853 466666   33211   11233568899999999999999999999987654  88899


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC-CCCCeEEccCCccccc
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIGVHQLF  485 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~-~~~~~kl~DfGl~~~~  485 (640)
                      |.|..|+|+.|+++.+     .++.+...++++||.+||.|||+. .|||||||||-.||+|+ ..|.+||+|+|||...
T Consensus       123 EL~TSGtLr~Y~kk~~-----~vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~  196 (632)
T KOG0584|consen  123 ELFTSGTLREYRKKHR-----RVNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLL  196 (632)
T ss_pred             ecccCCcHHHHHHHhc-----cCCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCCcCceeecchhHHHHh
Confidence            9999999999998776     467788999999999999999997 57899999999999998 5689999999999887


Q ss_pred             CC----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhc---cccccc
Q 006559          486 HT----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQ---DESAWE  558 (640)
Q Consensus       486 ~~----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~---~~~~~~  558 (640)
                      ..    ..++|+.|||||+.        ...|++.+||||||+.++||+|+..||.+-. +.++.-+.+..   ......
T Consensus       197 r~s~aksvIGTPEFMAPEmY--------EE~YnE~VDVYaFGMCmLEMvT~eYPYsEC~-n~AQIYKKV~SGiKP~sl~k  267 (632)
T KOG0584|consen  197 RKSHAKSVIGTPEFMAPEMY--------EENYNELVDVYAFGMCMLEMVTSEYPYSECT-NPAQIYKKVTSGIKPAALSK  267 (632)
T ss_pred             hccccceeccCccccChHHH--------hhhcchhhhhhhhhHHHHHHHhccCChhhhC-CHHHHHHHHHcCCCHHHhhc
Confidence            54    34789999999952        3678899999999999999999999997532 22222222221   111111


Q ss_pred             ccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       559 ~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      +-|             .++.+++-.|+.. .++|||+.|++.
T Consensus       268 V~d-------------Pevr~fIekCl~~-~~~R~sa~eLL~  295 (632)
T KOG0584|consen  268 VKD-------------PEVREFIEKCLAT-KSERLSAKELLK  295 (632)
T ss_pred             cCC-------------HHHHHHHHHHhcC-chhccCHHHHhh
Confidence            111             2355566779999 899999988864

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.5e-33  Score=286.85  Aligned_cols=235  Identities=21%  Similarity=0.361  Sum_probs=186.0

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||.|+||.||+|+.. +++.||+|.+....   ....+.+|++++++++|+||+++.+++.+....++|+||+++++
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~   85 (274)
T cd06609           6 LECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYCGGGS   85 (274)
T ss_pred             hhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEeeCCCc
Confidence            457999999999999964 57889999986542   23467789999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-----
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-----  488 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-----  488 (640)
                      |.+++...      ++++..+..++.|++.||.|||+   .+++||||+|+||++++++.++|+|||+++.....     
T Consensus        86 L~~~~~~~------~~~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~  156 (274)
T cd06609          86 CLDLLKPG------KLDETYIAFILREVLLGLEYLHE---EGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRN  156 (274)
T ss_pred             HHHHHhhc------CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEEcccccceeecccccccc
Confidence            99998753      57899999999999999999994   55999999999999999999999999998776432     


Q ss_pred             -ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          489 -FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       489 -~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                       ..++..|+|||++       ....++.++|||||||++|||+||+.||.....  ...........      .+.+.. 
T Consensus       157 ~~~~~~~y~~PE~~-------~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~--~~~~~~~~~~~------~~~~~~-  220 (274)
T cd06609         157 TFVGTPFWMAPEVI-------KQSGYDEKADIWSLGITAIELAKGEPPLSDLHP--MRVLFLIPKNN------PPSLEG-  220 (274)
T ss_pred             cccCCccccChhhh-------ccCCCCchhhHHHHHHHHHHHHhCCCCcccCch--HHHHHHhhhcC------CCCCcc-
Confidence             2346679999964       334477899999999999999999999964331  11111111110      001000 


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .   ....++.+++.+||..+|++||+++++++
T Consensus       221 ~---~~~~~~~~~l~~~l~~~p~~Rpt~~~il~  250 (274)
T cd06609         221 N---KFSKPFKDFVSLCLNKDPKERPSAKELLK  250 (274)
T ss_pred             c---ccCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence            0   02234667888899999999999999965

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=8.1e-34  Score=289.70  Aligned_cols=236  Identities=19%  Similarity=0.242  Sum_probs=177.2

Q ss_pred             cccccCcceEEEEEe-CCCcEEEEEEecccc----c-hHHHHHHH---HHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          340 LLGKGCVGATYKVVL-DGGDVVVVKRIRERK----K-KREVDEWL---RVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~----~-~~~~~~e~---~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      +||+|+||.||++.. .++..+|+|.+....    . ...+.+|.   +++...+||||+.+.+++...+..++||||++
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            489999999999996 458899999886541    1 12233333   34445579999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                      +|+|.+++....     .+++.....++.|++.||+|||+   .+|+||||||+|||+++++.+||+|||++.....   
T Consensus        81 ~~~L~~~i~~~~-----~l~~~~~~~i~~qi~~al~~lH~---~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~  152 (279)
T cd05633          81 GGDLHYHLSQHG-----VFSEKEMRFYATEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP  152 (279)
T ss_pred             CCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCcCCCCCCHHHEEECCCCCEEEccCCcceeccccCc
Confidence            999999987543     58999999999999999999995   4599999999999999999999999999875432   


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                       ...++..|+|||...      ....++.++|||||||++|||+||+.||.................      .+..  .
T Consensus       153 ~~~~~~~~y~aPE~~~------~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~------~~~~--~  218 (279)
T cd05633         153 HASVGTHGYMAPEVLQ------KGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLT------VNVE--L  218 (279)
T ss_pred             cCcCCCcCccCHHHhc------CCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHHHHHHHhhc------CCcC--C
Confidence             234578999999642      134567899999999999999999999975332222222111110      0000  1


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRP-----NMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RP-----s~~~v~~  600 (640)
                      +..   ...++.+++..|+..||++||     +++|+++
T Consensus       219 ~~~---~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~  254 (279)
T cd05633         219 PDS---FSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKE  254 (279)
T ss_pred             ccc---cCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHh
Confidence            111   223466677889999999999     5777755

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=1.2e-33  Score=284.25  Aligned_cols=239  Identities=27%  Similarity=0.407  Sum_probs=188.0

Q ss_pred             hccccccCcceEEEEEeCC-----CcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVLDG-----GDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-----~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .+.||+|+||.||+++..+     +..||+|.+....   ..+.+..|++.++.++|+||+++++++...+..+++|||+
T Consensus         4 ~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e~~   83 (258)
T smart00219        4 GKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVMEYM   83 (258)
T ss_pred             cceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEecc
Confidence            4679999999999999654     3789999997653   3457888999999999999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-  488 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-  488 (640)
                      ++++|.+++.....   ..+++..+..++.|++.||+|||+   .+++||||||+||++++++.++|+|||+++..... 
T Consensus        84 ~~~~l~~~~~~~~~---~~~~~~~~~~~~~ql~~~l~~lh~---~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~  157 (258)
T smart00219       84 EGGDLLDYLRKNRP---KELSLSDLLSFALQIARGMEYLES---KNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDD  157 (258)
T ss_pred             CCCCHHHHHHhhhh---ccCCHHHHHHHHHHHHHHHHHHhc---CCeeecccccceEEEccCCeEEEcccCCceeccccc
Confidence            99999999975431   127899999999999999999994   46999999999999999999999999998765432 


Q ss_pred             ------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccc
Q 006559          489 ------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFD  561 (640)
Q Consensus       489 ------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  561 (640)
                            ...+..|+|||..       ....++.++||||+||+++||++ |+.||....  .....+........     
T Consensus       158 ~~~~~~~~~~~~y~~Pe~~-------~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~--~~~~~~~~~~~~~~-----  223 (258)
T smart00219      158 YYKKKGGKLPIRWMAPESL-------KDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMS--NEEVLEYLKKGYRL-----  223 (258)
T ss_pred             ccccccCCCcccccChHHh-------ccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHhcCCCC-----
Confidence                  1234679999954       34556789999999999999999 788886422  12222222111100     


Q ss_pred             hhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 006559          562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMI  602 (640)
Q Consensus       562 ~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L  602 (640)
                         ...   .....++.+++.+|+..+|++|||+.++++.|
T Consensus       224 ---~~~---~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      224 ---PKP---ENCPPEIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             ---CCC---CcCCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence               000   11234577788899999999999999998764

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=8.2e-34  Score=297.07  Aligned_cols=193  Identities=21%  Similarity=0.291  Sum_probs=161.0

Q ss_pred             hccccccCcceEEEEEeCC-CcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLDG-GDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .++||+|+||.||+++... +..+|+|.+.+.     .....+.+|+.++..++|+||+++++++...+..|+||||+++
T Consensus         6 ~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~ey~~~   85 (332)
T cd05623           6 LKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVMDYYVG   85 (332)
T ss_pred             EEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEEeccCC
Confidence            4679999999999999654 678999998643     1223467888899999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.++++....    .+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....    
T Consensus        86 g~L~~~l~~~~~----~l~~~~~~~~~~qi~~al~~lH~---~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~  158 (332)
T cd05623          86 GDLLTLLSKFED----RLPEDMARFYLAEMVIAIDSVHQ---LHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTV  158 (332)
T ss_pred             CcHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHEEECCCCCEEEeecchheecccCCcc
Confidence            999999975321    47888899999999999999994   5699999999999999999999999999865421    


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG  539 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~  539 (640)
                         ...+|..|+|||++....  .....++.++|||||||++|||++|+.||...
T Consensus       159 ~~~~~~gt~~y~aPE~~~~~~--~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~  211 (332)
T cd05623         159 QSSVAVGTPDYISPEILQAME--DGKGKYGPECDWWSLGVCMYEMLYGETPFYAE  211 (332)
T ss_pred             eecccccCccccCHHHHhccc--cCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCC
Confidence               134688999999764221  11345778999999999999999999999753

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=5.5e-34  Score=302.35  Aligned_cols=244  Identities=18%  Similarity=0.274  Sum_probs=180.3

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcC------CeEEEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGK------DELFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------~~~~lV~  406 (640)
                      .+.||+|+||.||++.. ..++.||||++...    ...+.+.+|+.+++.++||||+++++++...      ...|+||
T Consensus        29 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~~~~lv~  108 (364)
T cd07875          29 LKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVM  108 (364)
T ss_pred             EEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccccccCeEEEEE
Confidence            56799999999999985 45788999998753    2235567889999999999999999987643      3579999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||+++ +|.+++..       .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++...
T Consensus       109 e~~~~-~l~~~~~~-------~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~  177 (364)
T cd07875         109 ELMDA-NLCQVIQM-------ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  177 (364)
T ss_pred             eCCCC-CHHHHHHh-------cCCHHHHHHHHHHHHHHHHHHhh---CCeecCCCCHHHEEECCCCcEEEEeCCCccccC
Confidence            99975 77777642       36788899999999999999994   569999999999999999999999999998654


Q ss_pred             C-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccc----cc
Q 006559          487 T-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDES----AW  557 (640)
Q Consensus       487 ~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~----~~  557 (640)
                      .     ...++..|+|||++       ....++.++|||||||++|||+||+.||..... ...|.+.......    ..
T Consensus       178 ~~~~~~~~~~t~~y~aPE~~-------~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~  249 (364)
T cd07875         178 TSFMMTPYVVTRYYRAPEVI-------LGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH-IDQWNKVIEQLGTPCPEFM  249 (364)
T ss_pred             CCCcccCCcccCCcCCHHHH-------hCCCCCchhhHHhHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHhcCCCCHHHH
Confidence            3     23557899999975       334577899999999999999999999975321 1111111110000    00


Q ss_pred             cccc----------------------hhhcc--Ch-HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          558 EVFD----------------------FELIM--DK-EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       558 ~~~d----------------------~~~~~--~~-~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ....                      +....  +. .......++.+++.+|++.||++|||+.++++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~  317 (364)
T cd07875         250 KKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ  317 (364)
T ss_pred             HhhhHHHHHHHhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence            0000                      00000  00 00011235678889999999999999999876

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=1.1e-33  Score=289.19  Aligned_cols=245  Identities=20%  Similarity=0.292  Sum_probs=181.9

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc---chHHHHHHHH-HHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK---KKREVDEWLR-VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~---~~~~~~~e~~-~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+++.. +|..||+|+++...   ....+..|+. .++.++||||+++++++...+..|+||||++ |
T Consensus         6 ~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~   84 (283)
T cd06617           6 IEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICMEVMD-T   84 (283)
T ss_pred             EEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhhhhc-c
Confidence            467999999999999965 58999999987542   2233444544 4667789999999999999999999999997 6


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.+++...... ...+++..+..++.|++.||+|||+.  .+++||||||+||+++.++.+||+|||+++.....    
T Consensus        85 ~l~~~l~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~--~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~  161 (283)
T cd06617          85 SLDKFYKKVYDK-GLTIPEDILGKIAVSIVKALEYLHSK--LSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVAKT  161 (283)
T ss_pred             cHHHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeecccccccccccccc
Confidence            888887653321 23689999999999999999999953  26999999999999999999999999998765321    


Q ss_pred             -ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          489 -FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       489 -~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                       ..++..|+|||++.+.   .....++.++|||||||++|||++|+.||.............. ...      .+.... 
T Consensus       162 ~~~~~~~y~aPE~~~~~---~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~-~~~------~~~~~~-  230 (283)
T cd06617         162 IDAGCKPYMAPERINPE---LNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQVV-EEP------SPQLPA-  230 (283)
T ss_pred             cccCCccccChhhcCCc---ccccccCccccchhhHHHHHHHHhCCCCCCccccCHHHHHHHH-hcC------CCCCCc-
Confidence             2346789999975432   1124567899999999999999999999964222111111111 000      001100 


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                         .....++.+++..||+.+|++||++.++++
T Consensus       231 ---~~~~~~l~~li~~~l~~~p~~Rp~~~~il~  260 (283)
T cd06617         231 ---EKFSPEFQDFVNKCLKKNYKERPNYPELLQ  260 (283)
T ss_pred             ---cccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence               012235677888899999999999999875

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=4.5e-34  Score=301.90  Aligned_cols=181  Identities=20%  Similarity=0.324  Sum_probs=151.0

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ..+.||+|+||.||+|+.. .+..||+|......    ...|+.++++++||||+++++++...+..++||||+. |+|.
T Consensus        70 ~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~~----~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~  144 (357)
T PHA03209         70 VIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKGT----TLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHYS-SDLY  144 (357)
T ss_pred             EEEEecCCCCeEEEEEEECCCCceEEEEeCCccc----cHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEEccC-CcHH
Confidence            3568999999999999965 46788998754332    3457889999999999999999999999999999995 6898


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----Ccc
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----PFF  490 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----~~~  490 (640)
                      +++....    .++++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....     ...
T Consensus       145 ~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~  217 (357)
T PHA03209        145 TYLTKRS----RPLPIDQALIIEKQILEGLRYLHA---QRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAPAFLGLA  217 (357)
T ss_pred             HHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEEecCccccccccCccccccc
Confidence            8886533    258999999999999999999995   4599999999999999999999999999875322     234


Q ss_pred             ccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCC
Q 006559          491 INDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAK  536 (640)
Q Consensus       491 ~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~  536 (640)
                      ++..|+|||++       ....++.++|||||||++|||+++..|+
T Consensus       218 gt~~y~aPE~~-------~~~~~~~~~DiwSlGvvl~ell~~~~~~  256 (357)
T PHA03209        218 GTVETNAPEVL-------ARDKYNSKADIWSAGIVLFEMLAYPSTI  256 (357)
T ss_pred             ccccccCCeec-------CCCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence            57889999964       3445778999999999999999965443

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=1.3e-33  Score=286.95  Aligned_cols=242  Identities=23%  Similarity=0.358  Sum_probs=184.8

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc-----c-------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER-----K-------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFL  404 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-----~-------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~l  404 (640)
                      .+.||+|+||.||+|.. .+++.||+|.++..     .       ..+.+..|+.++++++||||+++++++...+..++
T Consensus         6 ~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   85 (272)
T cd06629           6 GELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEYLSI   85 (272)
T ss_pred             cceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCceEE
Confidence            46799999999999985 46889999987532     0       01346778999999999999999999999999999


Q ss_pred             EEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          405 VYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      ||||+++|+|.+++....     ++++..+..++.|++.||.|||+   .+++||||+|+||+++.++.++++|||+++.
T Consensus        86 v~e~~~~~~L~~~l~~~~-----~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~  157 (272)
T cd06629          86 FLEYVPGGSIGSCLRTYG-----RFEEQLVRFFTEQVLEGLAYLHS---KGILHRDLKADNLLVDADGICKISDFGISKK  157 (272)
T ss_pred             EEecCCCCcHHHHHhhcc-----CCCHHHHHHHHHHHHHHHHHHhh---CCeeecCCChhhEEEcCCCeEEEeecccccc
Confidence            999999999999997642     57888999999999999999995   4599999999999999999999999999876


Q ss_pred             cCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccc
Q 006559          485 FHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESA  556 (640)
Q Consensus       485 ~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  556 (640)
                      ....        ..++..|+|||++...     ...++.++||||||+++||+++|+.||...... ..+.+..... ..
T Consensus       158 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~-----~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~-~~~~~~~~~~-~~  230 (272)
T cd06629         158 SDDIYDNDQNMSMQGSVFWMAPEVIHSY-----SQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAI-AAMFKLGNKR-SA  230 (272)
T ss_pred             ccccccccccccccCCccccCHHHhccc-----cCCCCccchhHHHHHHHHHHHhCCCCCcCcchH-HHHHHhhccc-cC
Confidence            5321        2346689999975321     124678999999999999999999999643221 1111111110 00


Q ss_pred             ccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          557 WEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       557 ~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       ..+....     ..+....+.+++..||+.+|++||++.+|++
T Consensus       231 -~~~~~~~-----~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  268 (272)
T cd06629         231 -PPIPPDV-----SMNLSPVALDFLNACFTINPDNRPTARELLQ  268 (272)
T ss_pred             -CcCCccc-----cccCCHHHHHHHHHHhcCChhhCCCHHHHhh
Confidence             0011110     1122345677788899999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=3.4e-33  Score=284.73  Aligned_cols=236  Identities=20%  Similarity=0.368  Sum_probs=186.1

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ..+.||+|+||.||+|.. .++..||+|.+....   ..+.+.+|+.++++++||||+++++++...+..++||||+++|
T Consensus         8 ~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   87 (277)
T cd06641           8 KLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGG   87 (277)
T ss_pred             hheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeCCCC
Confidence            356799999999999985 467889999876442   2346778999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.+++...      .+++.....++.|++.|+.|||   ..+++|+||||+||+++.++.++|+|||+++.....    
T Consensus        88 ~l~~~i~~~------~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~~  158 (277)
T cd06641          88 SALDLLEPG------PLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKR  158 (277)
T ss_pred             cHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHc---cCCeecCCCCHHhEEECCCCCEEEeecccceecccchhhh
Confidence            999998643      4789999999999999999999   456999999999999999999999999998765432    


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                        ..++..|+|||..       ....++.++|||||||++|||++|+.||.....  ..+.........      +.  .
T Consensus       159 ~~~~~~~~y~~PE~~-------~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~--~~~~~~~~~~~~------~~--~  221 (277)
T cd06641         159 NTFVGTPFWMAPEVI-------KQSAYDSKADIWSLGITAIELAKGEPPHSELHP--MKVLFLIPKNNP------PT--L  221 (277)
T ss_pred             ccccCCccccChhhh-------ccCCCCchhhHHHHHHHHHHHHcCCCCCCccch--HHHHHHHhcCCC------CC--C
Confidence              2346789999964       334567899999999999999999999864321  112211111100      00  0


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                      .   .....++.+++.+||+.+|++||++.++++.
T Consensus       222 ~---~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~  253 (277)
T cd06641         222 E---GNYSKPLKEFVEACLNKEPSFRPTAKELLKH  253 (277)
T ss_pred             C---cccCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence            1   1122346677888999999999999999873

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=8.8e-34  Score=291.19  Aligned_cols=246  Identities=22%  Similarity=0.301  Sum_probs=184.4

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc-chHHHHHHHHHHhcc-CCCcccceeEEEEcC-----CeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-KKREVDEWLRVIGGL-RHSNIVSIRAYCNGK-----DELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~-----~~~~lV~Ey~  409 (640)
                      .+.||+|+||.||++.. .+++.+|+|.+.... ...++.+|+.++.++ +|||++++++++...     +..++||||+
T Consensus        27 ~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~~~~~~lv~ey~  106 (291)
T cd06639          27 IETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQLWLVLELC  106 (291)
T ss_pred             EEEeecCCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhcCCCCeEEEEEEEEeccccCCCeeEEEEEEC
Confidence            46799999999999986 568889999987542 345677888888888 899999999998753     3589999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--  487 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--  487 (640)
                      ++|+|.++++.... ....+++..+..++.|++.||+|||.   .+|+||||||+||++++++.+||+|||+++....  
T Consensus       107 ~~~sL~~~~~~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~nili~~~~~~kl~dfg~~~~~~~~~  182 (291)
T cd06639         107 NGGSVTELVKGLLI-CGQRLDEAMISYILYGALLGLQHLHN---NRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTR  182 (291)
T ss_pred             CCCcHHHHHHHhhh-cCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEEcCCCCEEEeecccchhccccc
Confidence            99999998864321 12257899999999999999999994   5699999999999999999999999999876432  


Q ss_pred             ----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchh
Q 006559          488 ----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       488 ----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                          ...++..|+|||++....  .....++.++|||||||++|||++|+.||......  .-+...... ....+.+  
T Consensus       183 ~~~~~~~~~~~y~aPE~~~~~~--~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~--~~~~~~~~~-~~~~~~~--  255 (291)
T cd06639         183 LRRNTSVGTPFWMAPEVIACEQ--QYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPV--KTLFKIPRN-PPPTLLH--  255 (291)
T ss_pred             ccccCccCCccccChhhhcCCC--CcccccCCccchHHHHHHHHHHhhCCCCCCCCcHH--HHHHHHhcC-CCCCCCc--
Confidence                223467899999753321  11234678999999999999999999998643211  101011000 0000101  


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                         .   .+....+.+++.+||+.+|++||++.++++
T Consensus       256 ---~---~~~~~~l~~li~~~l~~~p~~Rps~~~il~  286 (291)
T cd06639         256 ---P---EKWCRSFNHFISQCLIKDFEARPSVTHLLE  286 (291)
T ss_pred             ---c---cccCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence               1   122235777888999999999999999875

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=4e-34  Score=299.23  Aligned_cols=193  Identities=19%  Similarity=0.272  Sum_probs=160.8

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+++.. ++..||+|.+...     .....+.+|..++..++|+||+++++++...+..|+||||+++
T Consensus         6 ~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~Ey~~g   85 (331)
T cd05624           6 IKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVMDYYVG   85 (331)
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCCC
Confidence            467999999999999965 5778999998653     1223467788899999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---  488 (640)
                      |+|.+++....    ..+++.....++.|++.||+|||   ..+|+||||||+|||++.++.+||+|||+++.....   
T Consensus        86 g~L~~~l~~~~----~~l~~~~~~~~~~qi~~~L~~lH---~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~  158 (331)
T cd05624          86 GDLLTLLSKFE----DRLPEDMARFYIAEMVLAIHSIH---QLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTV  158 (331)
T ss_pred             CcHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCchHHEEEcCCCCEEEEeccceeeccCCCce
Confidence            99999997532    14788889999999999999999   456999999999999999999999999998765421   


Q ss_pred             ----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 006559          489 ----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG  539 (640)
Q Consensus       489 ----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~  539 (640)
                          ..++..|+|||++....  .....++.++|||||||++|||+||+.||...
T Consensus       159 ~~~~~~gt~~y~aPE~~~~~~--~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~  211 (331)
T cd05624         159 QSSVAVGTPDYISPEILQAME--DGMGKYGPECDWWSLGVCMYEMLYGETPFYAE  211 (331)
T ss_pred             eeccccCCcccCCHHHHhccc--cCCCCCCCcccEEeeehhhhhhhhCCCCccCC
Confidence                24688999999753211  01135678999999999999999999999753

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=2.5e-33  Score=287.86  Aligned_cols=249  Identities=21%  Similarity=0.333  Sum_probs=180.0

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||.||+|.. .++..||+|.+....   ....+.+|+++++.++|+||+++.+++...+..|+||||++ ++
T Consensus        10 ~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~-~~   88 (291)
T cd07870          10 LEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVFEYMH-TD   88 (291)
T ss_pred             EEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEEeccc-CC
Confidence            46799999999999985 468899999986542   22456788999999999999999999999999999999996 67


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------  487 (640)
                      +.+++....    ..+.+..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+++....      
T Consensus        89 l~~~~~~~~----~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~  161 (291)
T cd07870          89 LAQYMIQHP----GGLHPYNVRLFMFQLLRGLAYIHG---QHILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTYS  161 (291)
T ss_pred             HHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChHHEEEcCCCcEEEeccccccccCCCCCCCC
Confidence            777765432    146778888899999999999995   4599999999999999999999999999875422      


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHH---hhc-ccccccc----
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQM---MGQ-DESAWEV----  559 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~---~~~-~~~~~~~----  559 (640)
                      ....+..|+|||++.+      ...++.++|||||||++|||+||+.||...........+.   ... ....+..    
T Consensus       162 ~~~~~~~y~aPE~~~~------~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (291)
T cd07870         162 SEVVTLWYRPPDVLLG------ATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKL  235 (291)
T ss_pred             CccccccccCCceeec------CCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhhhhhhhc
Confidence            1234678999996532      2345678999999999999999999997432211111110   000 0000000    


Q ss_pred             --cchhhc---cChHHH------HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 --FDFELI---MDKEME------EEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 --~d~~~~---~~~~~~------~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                        ......   ......      .....+.+++.+|++.||++|||+.+++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~  287 (291)
T cd07870         236 PNYKPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALL  287 (291)
T ss_pred             ccccchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhc
Confidence              000000   000000      01235667888899999999999999864

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=2.2e-33  Score=283.36  Aligned_cols=243  Identities=20%  Similarity=0.298  Sum_probs=187.8

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEc--CCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNG--KDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~--~~~~~lV~Ey~~  410 (640)
                      .+.||+|+||.||++.. .++..+|+|.+...    ...+.+..|++++++++||||+++++++..  ....+++|||++
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~e~~~   84 (265)
T cd08217           5 LETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVMEYCE   84 (265)
T ss_pred             eeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEehhcc
Confidence            45799999999999985 46788999988643    223457788999999999999999998764  456899999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCC--CCCceecCCCCCCeEECCCCCeEEccCCcccccCC-
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN--KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~--~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-  487 (640)
                      +++|.+++..... ...++++...+.++.|++.||+|||..+  ..+++|+||||+||+++.++.+||+|||++..... 
T Consensus        85 ~~~L~~~l~~~~~-~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~~  163 (265)
T cd08217          85 GGDLAQLIQKCKK-ERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHD  163 (265)
T ss_pred             CCCHHHHHHHHhh-cccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccccccCC
Confidence            9999999875421 1236899999999999999999999443  45699999999999999999999999999887543 


Q ss_pred             -----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccch
Q 006559          488 -----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       488 -----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                           ...++..|+|||++       ....++.++||||||+++|+|++|+.||....  .....+...... .     +
T Consensus       164 ~~~~~~~~~~~~~~~pE~~-------~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~~~-~-----~  228 (265)
T cd08217         164 SSFAKTYVGTPYYMSPEQL-------NHMSYDEKSDIWSLGCLIYELCALSPPFTARN--QLQLASKIKEGK-F-----R  228 (265)
T ss_pred             cccccccccCCCccChhhh-------cCCCCCchhHHHHHHHHHHHHHHCCCcccCcC--HHHHHHHHhcCC-C-----C
Confidence                 22457789999964       33456789999999999999999999997543  222222211110 0     0


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                      .  ..   .....++.+++.+|++.+|++||++.+|++.
T Consensus       229 ~--~~---~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~  262 (265)
T cd08217         229 R--IP---YRYSSELNEVIKSMLNVDPDKRPSTEELLQL  262 (265)
T ss_pred             C--Cc---cccCHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence            0  11   1223457788889999999999999999763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=1.7e-33  Score=287.96  Aligned_cols=250  Identities=20%  Similarity=0.330  Sum_probs=184.6

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|+.. ++..||||.+....    ....+..|++++++++||||+++++++...+..++||||++ +
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~-~   83 (284)
T cd07860           5 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLH-Q   83 (284)
T ss_pred             eeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeeccc-c
Confidence            457999999999999864 68899999887542    23467889999999999999999999999999999999996 6


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.+++.....   ..+++..+..++.|++.||+|||.   .+++||||+|+||++++++.+||+|||+++.....    
T Consensus        84 ~l~~~~~~~~~---~~l~~~~~~~~~~~i~~~l~~lh~---~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~~~  157 (284)
T cd07860          84 DLKKFMDASPL---SGIPLPLIKSYLFQLLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTY  157 (284)
T ss_pred             CHHHHHHhCCC---CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEEeeccchhhcccCcccc
Confidence            89988865432   258899999999999999999994   55999999999999999999999999998765321    


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc--chHHHHHHhhcccc-cccccch-
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL--GIVKWVQMMGQDES-AWEVFDF-  562 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~--~~~~~~~~~~~~~~-~~~~~d~-  562 (640)
                        ...+..|+|||++.+      ...++.++|||||||++|||+||+.||.....  ...+..+....... .+...+. 
T Consensus       158 ~~~~~~~~y~aPE~~~~------~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (284)
T cd07860         158 THEVVTLWYRAPEILLG------CKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSL  231 (284)
T ss_pred             ccccccccccCCeEEec------CCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhHH
Confidence              223667999996532      23356789999999999999999999874321  11111221111110 0000000 


Q ss_pred             ---hh----ccChHH----HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          563 ---EL----IMDKEM----EEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       563 ---~~----~~~~~~----~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                         ..    ......    .....++.+++.+||+.||++||++.++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~  280 (284)
T cd07860         232 PDYKPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALA  280 (284)
T ss_pred             HHHHhhcccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhc
Confidence               00    000000    011234667888999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=5.7e-34  Score=299.98  Aligned_cols=188  Identities=26%  Similarity=0.400  Sum_probs=161.0

Q ss_pred             hhccccccCcceEEEEE-eCCCcEEEEEEecccc-chHHHHHHHHHHhccC-C-----CcccceeEEEEcCCeEEEEEec
Q 006559          337 SAELLGKGCVGATYKVV-LDGGDVVVVKRIRERK-KKREVDEWLRVIGGLR-H-----SNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~~-~~~~~~~e~~~l~~l~-H-----~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      ..++||+|.||.|.+|. ..+++.||||+++... ..++...|+++|..|+ |     -|+|+++++|...++.|||+|.
T Consensus       190 V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~HlciVfEL  269 (586)
T KOG0667|consen  190 VLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCIVFEL  269 (586)
T ss_pred             EEEEecccccceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceeeeehh
Confidence            46789999999999998 4568999999999774 3456678899999887 4     4899999999999999999998


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC--CCeEEccCCcccccC
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL--GNACISDIGVHQLFH  486 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~--~~~kl~DfGl~~~~~  486 (640)
                      +.. +|+++++.+...   .++...+..|+.||+.||.+||   +.+|||+||||+||||.+.  ..+||+|||.+....
T Consensus       270 L~~-NLYellK~n~f~---Glsl~~ir~~~~Qil~~L~~L~---~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~  342 (586)
T KOG0667|consen  270 LST-NLYELLKNNKFR---GLSLPLVRKFAQQILTALLFLH---ELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFES  342 (586)
T ss_pred             hhh-hHHHHHHhcCCC---CCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCChhheeeccCCcCceeEEecccccccC
Confidence            865 999999977643   4888999999999999999999   5569999999999999754  379999999998765


Q ss_pred             C---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCC
Q 006559          487 T---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD  538 (640)
Q Consensus       487 ~---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~  538 (640)
                      .   .++.+..|+|||++.       +..|+.+.||||||||+.||+||.+-|.+
T Consensus       343 q~vytYiQSRfYRAPEVIL-------GlpY~~~IDmWSLGCIlAEL~tG~PLfpG  390 (586)
T KOG0667|consen  343 QRVYTYIQSRFYRAPEVIL-------GLPYDTAIDMWSLGCILAELFTGEPLFPG  390 (586)
T ss_pred             Ccceeeeeccccccchhhc-------cCCCCCccceeehhhhHHhHhcCccccCC
Confidence            4   345688999999864       45677899999999999999999877764

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-33  Score=292.96  Aligned_cols=253  Identities=21%  Similarity=0.359  Sum_probs=184.9

Q ss_pred             hccccccCcceEEEEEeC---CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcC--CeEEEEEe
Q 006559          338 AELLGKGCVGATYKVVLD---GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGK--DELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~---~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lV~E  407 (640)
                      .+.||+|+||.||+|+..   .+..||+|.+...     ...+.+.+|+.++++++||||+++++++...  +..++|||
T Consensus         5 ~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e   84 (316)
T cd07842           5 EGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYLLFD   84 (316)
T ss_pred             EEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEEEEe
Confidence            456999999999999964   4789999998763     2345677889999999999999999999987  78999999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC----CCCeEEccCCccc
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ----LGNACISDIGVHQ  483 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~----~~~~kl~DfGl~~  483 (640)
                      |+++ ++.+++..........++......++.|++.||+|||+   .+|+||||||+||+++.    ++.+||+|||+++
T Consensus        85 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~  160 (316)
T cd07842          85 YAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHS---NWVLHRDLKPANILVMGEGPERGVVKIGDLGLAR  160 (316)
T ss_pred             CCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHh---CCEeeCCCCHHHEEEcCCCCccceEEECCCcccc
Confidence            9975 67776654332222357888999999999999999994   45999999999999999    9999999999987


Q ss_pred             ccCCC---------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcch-----------
Q 006559          484 LFHTP---------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGI-----------  543 (640)
Q Consensus       484 ~~~~~---------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~-----------  543 (640)
                      .....         ...+..|+|||+..      ....++.++|||||||++|||++|+.||.......           
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~------~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  234 (316)
T cd07842         161 LFNAPLKPLADLDPVVVTIWYRAPELLL------GARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQL  234 (316)
T ss_pred             ccCCCcccccccCCccccccccCHHHHh------CCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHH
Confidence            65321         23467799999642      22346789999999999999999999997433221           


Q ss_pred             HHHHHHhhcccc-cc----------c---ccchhhccChHHH-------HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          544 VKWVQMMGQDES-AW----------E---VFDFELIMDKEME-------EEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       544 ~~~~~~~~~~~~-~~----------~---~~d~~~~~~~~~~-------~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ...+..+..... .+          .   .............       ....++.+++.+|++.||++|||+.|+++
T Consensus       235 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~  312 (316)
T cd07842         235 ERIFEVLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALE  312 (316)
T ss_pred             HHHHHHhCCCchhHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence            111111111000 00          0   0000000000000       12346788999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=2.4e-33  Score=283.57  Aligned_cols=240  Identities=24%  Similarity=0.371  Sum_probs=188.6

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||.||++... +++.+|+|.+....   ..+++.+|++++++++||||+++++++......++|+||+++++
T Consensus         6 ~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~   85 (265)
T cd06605           6 LGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYMDGGS   85 (265)
T ss_pred             HHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEecCCCc
Confidence            467999999999999975 58889999987652   33567789999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----Cc
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----PF  489 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----~~  489 (640)
                      |.+++....    .+++......++.|++.||+|||+  ..+++|+||||+||++++++.+||+|||.+.....    ..
T Consensus        86 L~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~lH~--~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~  159 (265)
T cd06605          86 LDKILKEVQ----GRIPERILGKIAVAVLKGLTYLHE--KHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKTF  159 (265)
T ss_pred             HHHHHHHcc----CCCCHHHHHHHHHHHHHHHHHHcC--CCCeecCCCCHHHEEECCCCCEEEeecccchhhHHHHhhcc
Confidence            999997542    257888999999999999999995  15699999999999999999999999999876532    23


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC---cchHHHHHHhhcccccccccchhhcc
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGE---LGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                      ..+..|+|||.+       ....++.++|||||||++|||++|+.||....   ......++.......      +.  .
T Consensus       160 ~~~~~y~~PE~~-------~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~------~~--~  224 (265)
T cd06605         160 VGTSSYMAPERI-------QGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPP------PR--L  224 (265)
T ss_pred             cCChhccCHHHH-------cCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcCCC------CC--C
Confidence            456789999964       33467789999999999999999999986432   122222222211110      00  0


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ...  ....++.+++..||..+|++||++.+++.
T Consensus       225 ~~~--~~~~~~~~li~~~l~~~p~~Rpt~~~ll~  256 (265)
T cd06605         225 PSG--KFSPDFQDFVNLCLIKDPRERPSYKELLE  256 (265)
T ss_pred             Chh--hcCHHHHHHHHHHcCCCchhCcCHHHHhh
Confidence            010  12345677888899999999999999874

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-33  Score=286.10  Aligned_cols=236  Identities=22%  Similarity=0.371  Sum_probs=185.1

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc---cchHHHHHHHHHHhccC---CCcccceeEEEEcCCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER---KKKREVDEWLRVIGGLR---HSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~---H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      .+.||+|+||.||+|.. .++..||+|.+...   ....++.+|+.++++++   |||++++++++......++||||++
T Consensus         6 ~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~e~~~   85 (277)
T cd06917           6 LELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIMEYAE   85 (277)
T ss_pred             hhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEEecCC
Confidence            46799999999999995 56889999998654   22355778888888886   9999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC--
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP--  488 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~--  488 (640)
                      +++|.+++...      ++++.....++.|++.||.|||+   .+|+|+||+|+||+++.++.++|+|||++......  
T Consensus        86 ~~~L~~~~~~~------~l~~~~~~~i~~~i~~~l~~lh~---~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~  156 (277)
T cd06917          86 GGSVRTLMKAG------PIAEKYISVIIREVLVALKYIHK---VGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSS  156 (277)
T ss_pred             CCcHHHHHHcc------CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcCHHHEEEcCCCCEEEccCCceeecCCCcc
Confidence            99999998643      58899999999999999999994   56999999999999999999999999998765422  


Q ss_pred             ----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          489 ----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       489 ----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                          ..++..|+|||.+.      ....++.++|||||||++|||++|+.||....  ...+.......      ..+.+
T Consensus       157 ~~~~~~~~~~y~aPE~~~------~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~--~~~~~~~~~~~------~~~~~  222 (277)
T cd06917         157 KRSTFVGTPYWMAPEVIT------EGKYYDTKADIWSLGITIYEMATGNPPYSDVD--AFRAMMLIPKS------KPPRL  222 (277)
T ss_pred             ccccccCCcceeCHHHhc------cCCccccchhHHHHHHHHHHHHhCCCCCCCCC--hhhhhhccccC------CCCCC
Confidence                23466799999642      22346789999999999999999999997432  11111111100      00111


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..    .....++.+++.+||+.||++||++.++++
T Consensus       223 ~~----~~~~~~~~~~i~~~l~~~p~~R~~~~~il~  254 (277)
T cd06917         223 ED----NGYSKLLREFVAACLDEEPKERLSAEELLK  254 (277)
T ss_pred             Cc----ccCCHHHHHHHHHHcCCCcccCcCHHHHhh
Confidence            10    012345777888999999999999999976

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-33  Score=285.85  Aligned_cols=246  Identities=22%  Similarity=0.331  Sum_probs=186.7

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc-chHHHHHHHHHHhcc-CCCcccceeEEEEcCC------eEEEEEec
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKD------ELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~------~~~lV~Ey  408 (640)
                      .+.||+|+||.||+|... +++.+++|.+.... ..+.+.+|+.+++++ +|+||+++++++....      ..++||||
T Consensus        11 ~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~   90 (275)
T cd06608          11 VEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQLWLVMEL   90 (275)
T ss_pred             eeeecCCCCeEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceEEEEEEEc
Confidence            567999999999999974 57789999987653 346688899999998 7999999999997544      48999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-  487 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-  487 (640)
                      +++++|.+++..... ....+++..+..++.|++.||+|||+   .+++|+||+|+||++++++.+||+|||++..... 
T Consensus        91 ~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~~ql~~al~~lH~---~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~  166 (275)
T cd06608          91 CGGGSVTDLVKGLRK-KGKRLKEEWIAYILRETLRGLAYLHE---NKVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDST  166 (275)
T ss_pred             CCCCcHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHHHEEEccCCeEEECCCccceecccc
Confidence            999999998865321 12358899999999999999999994   4599999999999999999999999999875432 


Q ss_pred             -----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccch
Q 006559          488 -----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       488 -----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                           ...++..|+|||++....  .....++.++|||||||++|||+||+.||..... .....+. ...      ..+
T Consensus       167 ~~~~~~~~~~~~y~aPE~~~~~~--~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-~~~~~~~-~~~------~~~  236 (275)
T cd06608         167 LGRRNTFIGTPYWMAPEVIACDE--QPDASYDARSDVWSLGITAIELADGKPPLCDMHP-MRALFKI-PRN------PPP  236 (275)
T ss_pred             hhhhcCccccccccCHhHhcccc--cccCCccccccHHHhHHHHHHHHhCCCCccccch-HHHHHHh-hcc------CCC
Confidence                 233577899999764322  1234567899999999999999999999964221 1111111 100      000


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ....   ......++.+++.+||..||++|||+.++++
T Consensus       237 ~~~~---~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~  271 (275)
T cd06608         237 TLKS---PENWSKKFNDFISECLIKNYEQRPFMEELLE  271 (275)
T ss_pred             CCCc---hhhcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence            1111   1123345677888899999999999999875

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=1.7e-33  Score=287.62  Aligned_cols=243  Identities=19%  Similarity=0.316  Sum_probs=183.3

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc-cchHHHHHHHHHHhcc-CCCcccceeEEEEc------CCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER-KKKREVDEWLRVIGGL-RHSNIVSIRAYCNG------KDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~------~~~~~lV~Ey  408 (640)
                      .+.||+|+||.||+|+. ..++.+|+|.+... ....++..|+.++.++ +|+||+++++++..      .+..|+||||
T Consensus        21 ~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~  100 (282)
T cd06636          21 VEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEF  100 (282)
T ss_pred             heeeccCCCeEEEEEEEcCCCcEEEEEEEecChHHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCCCCEEEEEEEe
Confidence            46799999999999996 56788999988654 2345677788888888 69999999999853      4578999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-  487 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-  487 (640)
                      +++|+|.+++.....   ..+++..+..++.|++.||+|||+   .+|+||||||+||++++++.++|+|||++..... 
T Consensus       101 ~~~~~L~~~~~~~~~---~~~~~~~~~~~~~qi~~al~~LH~---~~ivH~dl~~~nili~~~~~~~l~dfg~~~~~~~~  174 (282)
T cd06636         101 CGAGSVTDLVKNTKG---NALKEDWIAYICREILRGLAHLHA---HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRT  174 (282)
T ss_pred             CCCCcHHHHHHHccC---CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEeeCcchhhhhcc
Confidence            999999999875432   247788888999999999999995   4599999999999999999999999999875432 


Q ss_pred             -----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccch
Q 006559          488 -----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       488 -----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                           ...++..|+|||++....  .....++.++|||||||++|||+||+.||...... .. .......      ...
T Consensus       175 ~~~~~~~~~~~~y~aPE~l~~~~--~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~-~~-~~~~~~~------~~~  244 (282)
T cd06636         175 VGRRNTFIGTPYWMAPEVIACDE--NPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPM-RA-LFLIPRN------PPP  244 (282)
T ss_pred             ccCCCcccccccccCHhhcCccc--CcCcCCCcccchhHHHHHHHHHHhCCCCccccCHH-hh-hhhHhhC------CCC
Confidence                 233577899999764221  12345678999999999999999999999643211 00 0000000      000


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ...    ......++.+++.+||..||++||++.|+++
T Consensus       245 ~~~----~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~  278 (282)
T cd06636         245 KLK----SKKWSKKFIDFIEGCLVKNYLSRPSTEQLLK  278 (282)
T ss_pred             CCc----ccccCHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence            000    0122345778888999999999999998864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=2.5e-33  Score=283.99  Aligned_cols=238  Identities=21%  Similarity=0.367  Sum_probs=184.6

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc--------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK--------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~--------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      .+.||+|+||.||+++. .++..||+|.+....        ..+.+..|++.+++++|+||+++++++...+..++||||
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~v~e~   84 (268)
T cd06630           5 GQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNLFVEW   84 (268)
T ss_pred             cceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEEEEec
Confidence            46799999999999984 668899999986432        234677899999999999999999999999999999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC-CeEEccCCcccccCC
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG-NACISDIGVHQLFHT  487 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~-~~kl~DfGl~~~~~~  487 (640)
                      +++++|.+++....     ++++..+..++.|++.||.|||+   .+++|+||||+||+++.++ .+||+|||++.....
T Consensus        85 ~~~~~L~~~l~~~~-----~~~~~~~~~~~~ql~~al~~LH~---~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~  156 (268)
T cd06630          85 MAGGSVSHLLSKYG-----AFKEAVIINYTEQLLRGLSYLHE---NQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAA  156 (268)
T ss_pred             cCCCcHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEEccccccccccc
Confidence            99999999997543     57889999999999999999995   4699999999999998776 599999999876542


Q ss_pred             C----------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHHHHHHhhccccc
Q 006559          488 P----------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVKWVQMMGQDESA  556 (640)
Q Consensus       488 ~----------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~~~~~~~~~~~~  556 (640)
                      .          ..++..|+|||++       ....++.++||||+||++|||++|+.||..... .............  
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~PE~~-------~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--  227 (268)
T cd06630         157 KGTGAGEFQGQLLGTIAFMAPEVL-------RGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASAT--  227 (268)
T ss_pred             ccccCCccccccccccceeCHhHh-------ccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHHHHHHHhccC--
Confidence            1          2346689999964       234567899999999999999999999964322 1111111100000  


Q ss_pred             ccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          557 WEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       557 ~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                         ..  ...+   .....++.+++.+|+..+|++||++.++++
T Consensus       228 ---~~--~~~~---~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~  263 (268)
T cd06630         228 ---TA--PSIP---EHLSPGLRDVTLRCLELQPEDRPPSRELLK  263 (268)
T ss_pred             ---CC--CCCc---hhhCHHHHHHHHHHcCCCcccCcCHHHHhc
Confidence               00  0011   122345677888999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=3.9e-33  Score=281.68  Aligned_cols=230  Identities=19%  Similarity=0.276  Sum_probs=182.4

Q ss_pred             ccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          341 LGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       341 iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ||+|+||.||+++.. ++..+|+|.+....     ..+.+..|+.++++++||||+++++++..+...++||||+++++|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            699999999999975 47889999986532     235678899999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-----c
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-----F  489 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-----~  489 (640)
                      .+++....     .+++..+..++.|++.||+|||+   .+++|+||+|+||+++.++.+||+|||+++.....     .
T Consensus        81 ~~~l~~~~-----~l~~~~~~~~~~~i~~~l~~lH~---~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~~~~~  152 (262)
T cd05572          81 WTILRDRG-----LFDEYTARFYIACVVLAFEYLHN---RGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWTF  152 (262)
T ss_pred             HHHHhhcC-----CCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCHHHEEEcCCCCEEEeeCCcccccCcccccccc
Confidence            99997643     47888999999999999999994   56999999999999999999999999998876432     3


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChH
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKE  569 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  569 (640)
                      .++..|++||.+       ....++.++|+||||+++|||++|+.||.....+.....+.......       ....+..
T Consensus       153 ~~~~~~~~PE~~-------~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  218 (262)
T cd05572         153 CGTPEYVAPEII-------LNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDILKGNG-------KLEFPNY  218 (262)
T ss_pred             cCCcCccChhHh-------cCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHHHHHHHHhccCC-------CCCCCcc
Confidence            347789999964       33456789999999999999999999997544323333222221000       0001111


Q ss_pred             HHHHHHHHHHHHHHccCCCCCCCCCH
Q 006559          570 MEEEMRALLQVALLCLAPLPKDRPNM  595 (640)
Q Consensus       570 ~~~~~~~l~~l~~~Cl~~~P~~RPs~  595 (640)
                         ...++.+++.+||+.+|++||++
T Consensus       219 ---~~~~~~~~i~~~l~~~p~~R~~~  241 (262)
T cd05572         219 ---IDKAAKDLIKQLLRRNPEERLGN  241 (262)
T ss_pred             ---cCHHHHHHHHHHccCChhhCcCC
Confidence               13457788888999999999993

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=3e-33  Score=281.27  Aligned_cols=237  Identities=22%  Similarity=0.315  Sum_probs=185.4

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||++.. .+++.+|+|.+...    ...+.+..|++++++++||||+++++.+...+..++||||++++
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (256)
T cd08220           5 IRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEYAPGG   84 (256)
T ss_pred             EEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEecCCCC
Confidence            46799999999999985 46788999998654    22456788999999999999999999999899999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC-CCeEEccCCcccccCCC---
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL-GNACISDIGVHQLFHTP---  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~-~~~kl~DfGl~~~~~~~---  488 (640)
                      +|.+++....   ...+++..+..++.|++.||+|||+   .+|+|+||||+||+++++ +.+||+|||+++.....   
T Consensus        85 ~L~~~~~~~~---~~~~~~~~~~~~~~~i~~~l~~lh~---~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~  158 (256)
T cd08220          85 TLAEYIQKRC---NSLLDEDTILHFFVQILLALHHVHT---KLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKA  158 (256)
T ss_pred             CHHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCccc
Confidence            9999997543   2257899999999999999999995   469999999999999855 46899999998866432   


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                        ..++..|+|||.+       ....++.++|||||||++|||++|+.||......  ..+....... ...     .  
T Consensus       159 ~~~~~~~~y~aPE~~-------~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~--~~~~~~~~~~-~~~-----~--  221 (256)
T cd08220         159 YTVVGTPCYISPELC-------EGKPYNQKSDIWALGCVLYELASLKRAFEAANLP--ALVLKIMSGT-FAP-----I--  221 (256)
T ss_pred             cccccCCcccCchhc-------cCCCCCcccchHHHHHHHHHHHhCCCCcccCchH--HHHHHHHhcC-CCC-----C--
Confidence              2346789999964       3345678999999999999999999999753321  1111111100 000     0  


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .   .....++.+++..||+.+|++|||+.++++
T Consensus       222 ~---~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~  252 (256)
T cd08220         222 S---DRYSPDLRQLILSMLNLDPSKRPQLSQIMA  252 (256)
T ss_pred             C---CCcCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence            0   112335677888899999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=2e-33  Score=288.94  Aligned_cols=237  Identities=21%  Similarity=0.324  Sum_probs=184.4

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      .+.||+|+||.||++.. .++..||+|.+...  ...+.+..|+.++++++||||+++++++...+..|+|+||+++|+|
T Consensus        24 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L  103 (293)
T cd06647          24 FEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYLAGGSL  103 (293)
T ss_pred             eeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecCCCCcH
Confidence            46799999999999985 46788999998643  3345677889999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC------
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP------  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~------  488 (640)
                      .+++...      .+++..+..++.|++.||.|||   ..+++||||||+||+++.++.+||+|||++......      
T Consensus       104 ~~~~~~~------~l~~~~~~~i~~~l~~al~~LH---~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~~~~  174 (293)
T cd06647         104 TDVVTET------CMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST  174 (293)
T ss_pred             HHHHhhc------CCCHHHHHHHHHHHHHHHHHHH---hCCEeeccCCHHHEEEcCCCCEEEccCcceeccccccccccc
Confidence            9998753      3688899999999999999999   456999999999999999999999999987654321      


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..++..|++||..       ....++.++|||||||++||+++|+.||........  +........      +....  
T Consensus       175 ~~~~~~y~~PE~~-------~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~--~~~~~~~~~------~~~~~--  237 (293)
T cd06647         175 MVGTPYWMAPEVV-------TRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA--LYLIATNGT------PELQN--  237 (293)
T ss_pred             ccCChhhcCchhh-------ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhhh--eeehhcCCC------CCCCC--
Confidence            2346679999964       334567899999999999999999999974321110  000000000      00000  


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                       .......+.+++.+||+.+|++||++.+++..
T Consensus       238 -~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h  269 (293)
T cd06647         238 -PEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH  269 (293)
T ss_pred             -ccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence             11122346678888999999999999999753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.1e-33  Score=279.21  Aligned_cols=237  Identities=23%  Similarity=0.287  Sum_probs=184.4

Q ss_pred             hccccccCcceEEEEEeCC-CcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLDG-GDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||.|.-|+||++++.+ +..+|+|++.+..     .-...+.|.+||+.++||.++.|++.|..+...|+|||||++
T Consensus        82 lk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~meyCpG  161 (459)
T KOG0610|consen   82 LKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVMEYCPG  161 (459)
T ss_pred             HHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEecCCC
Confidence            4579999999999999876 4789999997651     223455678899999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccccc------
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF------  485 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~------  485 (640)
                      |+|+..++.+.+   ..++......++.+|..||+|||   -.+||.|||||+||||.++|++.|+||-|+...      
T Consensus       162 GdL~~LrqkQp~---~~fse~~aRFYaAEvl~ALEYLH---mlGivYRDLKPENILvredGHIMLsDFDLS~~~~~~Pt~  235 (459)
T KOG0610|consen  162 GDLHSLRQKQPG---KRFSESAARFYAAEVLLALEYLH---MLGIVYRDLKPENILVREDGHIMLSDFDLSLRCPVSPTL  235 (459)
T ss_pred             ccHHHHHhhCCC---CccchhhHHHHHHHHHHHHHHHH---hhceeeccCCcceeEEecCCcEEeeeccccccCCCCCee
Confidence            999999987653   25888889999999999999999   556999999999999999999999999974211      


Q ss_pred             -------------------------------C-------------------------CCccccccccCCccccCCCCccc
Q 006559          486 -------------------------------H-------------------------TPFFINDAYNAPELKFNNNNNYS  509 (640)
Q Consensus       486 -------------------------------~-------------------------~~~~~~~~y~aPE~~~~~~~~~~  509 (640)
                                                     .                         ..+++|..|.|||++.       
T Consensus       236 ~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~-------  308 (459)
T KOG0610|consen  236 VKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIR-------  308 (459)
T ss_pred             eccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeee-------
Confidence                                           0                         0123467899999754       


Q ss_pred             cCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCC
Q 006559          510 QRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLP  589 (640)
Q Consensus       510 ~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P  589 (640)
                      +...+.++|+|+|||++|||+.|+.||.+..... .....+.+          .+..+ +..+....+.+++...|.+||
T Consensus       309 G~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~~~-Tl~NIv~~----------~l~Fp-~~~~vs~~akDLIr~LLvKdP  376 (459)
T KOG0610|consen  309 GEGHGSAVDWWTFGIFLYEMLYGTTPFKGSNNKE-TLRNIVGQ----------PLKFP-EEPEVSSAAKDLIRKLLVKDP  376 (459)
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCcCCCCchh-hHHHHhcC----------CCcCC-CCCcchhHHHHHHHHHhccCh
Confidence            4556678999999999999999999998643221 11112221          11111 112334556677788999999


Q ss_pred             CCCCC----HHHHH
Q 006559          590 KDRPN----MSIVH  599 (640)
Q Consensus       590 ~~RPs----~~~v~  599 (640)
                      ++|-.    +.||.
T Consensus       377 ~kRlg~~rGA~eIK  390 (459)
T KOG0610|consen  377 SKRLGSKRGAAEIK  390 (459)
T ss_pred             hhhhccccchHHhh
Confidence            99987    66664

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=8.4e-33  Score=287.59  Aligned_cols=246  Identities=21%  Similarity=0.355  Sum_probs=187.8

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..+.||+|+||.||+++. .++..||+|.+...     .....+..|++++++++|||++++++++...+..++||||++
T Consensus        29 ~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  108 (317)
T cd06635          29 DLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYCL  108 (317)
T ss_pred             hhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeCCC
Confidence            456799999999999995 46789999998643     122457789999999999999999999999999999999997


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--C
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--P  488 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--~  488 (640)
                       |+|.+++....    .+++|..+..++.|++.||.|||+   .+|+||||+|+||+++.++.+||+|||++.....  .
T Consensus       109 -g~l~~~~~~~~----~~l~~~~~~~i~~~i~~~l~~lH~---~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~~~  180 (317)
T cd06635         109 -GSASDLLEVHK----KPLQEVEIAAITHGALQGLAYLHS---HNMIHRDIKAGNILLTEPGQVKLADFGSASIASPANS  180 (317)
T ss_pred             -CCHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcccEEECCCCCEEEecCCCccccCCccc
Confidence             58877775432    258899999999999999999994   5599999999999999999999999999876543  2


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..++..|+|||++..    .....++.++|||||||++|||++|+.||......  ............      ..    
T Consensus       181 ~~~~~~y~aPE~~~~----~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~--~~~~~~~~~~~~------~~----  244 (317)
T cd06635         181 FVGTPYWMAPEVILA----MDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM--SALYHIAQNESP------TL----  244 (317)
T ss_pred             ccCCccccChhhhhc----CCCCCCCccccHHHHHHHHHHHHhCCCCCCCccHH--HHHHHHHhccCC------CC----
Confidence            345778999997532    12345778999999999999999999998643211  111111111000      00    


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                      ........+.+++.+||+.+|++||++.++++..-.+.
T Consensus       245 ~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~  282 (317)
T cd06635         245 QSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHMFVLR  282 (317)
T ss_pred             CCccccHHHHHHHHHHccCCcccCcCHHHHHhChhhhc
Confidence            01122334677888999999999999999987654443

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=4.6e-33  Score=281.61  Aligned_cols=244  Identities=24%  Similarity=0.359  Sum_probs=187.3

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||.||+|.. .++..+++|++....   ..+.+.+|+..++.++|+||+++.+.+...+..++||||+++++
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~~   85 (267)
T cd06610           6 IEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPYLSGGS   85 (267)
T ss_pred             eeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEeccCCCc
Confidence            56799999999999995 467889999986542   34567889999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-----
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-----  488 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-----  488 (640)
                      |.++++....  ...+++.....++.|++.||+|||   ..+|+||||||+||++++++.+||+|||++..+...     
T Consensus        86 l~~~~~~~~~--~~~~~~~~~~~~~~ql~~al~~lh---~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~  160 (267)
T cd06610          86 LLDIMKSSYP--RGGLDEAIIATVLKEVLKGLEYLH---SNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTR  160 (267)
T ss_pred             HHHHHHHhcc--cCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCccccc
Confidence            9999975431  125789999999999999999999   456999999999999999999999999998665321     


Q ss_pred             -----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchh
Q 006559          489 -----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       489 -----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                           ..++..|++||++..      ...++.++|||||||++|||++|+.||...... ....+......       +.
T Consensus       161 ~~~~~~~~~~~y~~Pe~~~~------~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~-~~~~~~~~~~~-------~~  226 (267)
T cd06610         161 KVRKTFVGTPCWMAPEVMEQ------VHGYDFKADIWSFGITAIELATGAAPYSKYPPM-KVLMLTLQNDP-------PS  226 (267)
T ss_pred             cccccccCChhhcChHHHcc------ccCcCcccchHhHhHHHHHHHhCCCCccccChh-hhHHHHhcCCC-------CC
Confidence                 234678999996532      125678999999999999999999999743211 11111111100       01


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .............+.+++..||+.||++||++.++++
T Consensus       227 ~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~  263 (267)
T cd06610         227 LETGADYKKYSKSFRKMISLCLQKDPSKRPTAEELLK  263 (267)
T ss_pred             cCCccccccccHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            1111111122345677888899999999999999875

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=3.4e-33  Score=285.81  Aligned_cols=248  Identities=20%  Similarity=0.348  Sum_probs=186.8

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|+. .++..||+|++....    ....+.+|+.++++++||||+++++++......++||||+ ++
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~-~~   83 (286)
T cd07832           5 LGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEYM-PS   83 (286)
T ss_pred             EeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEeccc-CC
Confidence            46799999999999996 468899999987542    2456888999999999999999999999999999999999 99


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.+++....    .++++..+..++.|+++||+|||+   .+++|+||||+||+++.++.++|+|||++......    
T Consensus        84 ~L~~~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~  156 (286)
T cd07832          84 DLSEVLRDEE----RPLPEAQVKSYMRMLLKGVAYMHA---NGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRL  156 (286)
T ss_pred             CHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCCCc
Confidence            9999987543    258899999999999999999995   45999999999999999999999999998765432    


Q ss_pred             ---ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhh--cccc--cc----
Q 006559          489 ---FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMG--QDES--AW----  557 (640)
Q Consensus       489 ---~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~--~~~~--~~----  557 (640)
                         ..++..|+|||.+.      ....++.++||||+||++|||+||++||.... ....+.+...  ....  .+    
T Consensus       157 ~~~~~~~~~y~aPE~~~------~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  229 (286)
T cd07832         157 YSHQVATRWYRAPELLY------GARKYDPGVDLWAVGCIFAELLNGSPLFPGEN-DIEQLAIVFRTLGTPNEETWPGLT  229 (286)
T ss_pred             cccccCcccccCceeee------ccccCCchhHHHHHHHHHHHHHcCCcCcCCCC-HHHHHHHHHHHcCCCChHHHhhcc
Confidence               23467899999752      23345789999999999999999988876432 1111111111  0000  00    


Q ss_pred             cccch---------hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          558 EVFDF---------ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       558 ~~~d~---------~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      +..+.         .........+....+.+++.+|++.+|++||+++++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~  281 (286)
T cd07832         230 SLPDYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALR  281 (286)
T ss_pred             CcchhhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhh
Confidence            00000         00000001122356778888999999999999999875

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=6.7e-33  Score=280.02  Aligned_cols=241  Identities=24%  Similarity=0.355  Sum_probs=185.8

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|... ++..|++|.++...    ..+.+..|+.++++++|+||+++++++...+..++|+||++++
T Consensus         5 ~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (264)
T cd06626           5 GNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYCSGG   84 (264)
T ss_pred             eeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEecCCCC
Confidence            467999999999999864 68899999987552    3456788999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.+++....     .+++..+..++.|++.||+|||+   .+|+|+||+|+||++++++.+||+|||++......    
T Consensus        85 ~L~~~~~~~~-----~~~~~~~~~i~~~i~~~l~~lh~---~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~  156 (264)
T cd06626          85 TLEELLEHGR-----ILDEHVIRVYTLQLLEGLAYLHS---HGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTM  156 (264)
T ss_pred             cHHHHHhhcC-----CCChHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEcccccccccCCCCCcc
Confidence            9999997542     47888999999999999999994   55999999999999999999999999998765321    


Q ss_pred             ------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccch
Q 006559          489 ------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       489 ------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                            ...+..|++||++....    ...++.++||||||+++||+++|+.||....... .........      ..+
T Consensus       157 ~~~~~~~~~~~~~~~PE~~~~~~----~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~-~~~~~~~~~------~~~  225 (264)
T cd06626         157 GEEVQSLAGTPAYMAPEVITGGK----GKGHGRAADIWSLGCVVLEMATGKRPWSELDNEF-QIMFHVGAG------HKP  225 (264)
T ss_pred             cccccCCcCCcCccChhhccCCC----CCCCCcccchHHHHHHHHHHHhCCCCccCCcchH-HHHHHHhcC------CCC
Confidence                  22366899999753221    1236789999999999999999999996432111 111111100      000


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ...  . .......+.+++..||+.+|++||++.+++.
T Consensus       226 ~~~--~-~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~  260 (264)
T cd06626         226 PIP--D-SLQLSPEGKDFLDRCLESDPKKRPTASELLQ  260 (264)
T ss_pred             CCC--c-ccccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            110  0 0111334567888999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-33  Score=287.68  Aligned_cols=249  Identities=21%  Similarity=0.311  Sum_probs=185.1

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|... +++.||||.++..    ...+.+.+|++++++++|+||+++.+++...+..++||||++++
T Consensus         6 ~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~   85 (288)
T cd07833           6 LGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEYVERT   85 (288)
T ss_pred             EEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEecCCCC
Confidence            567999999999999965 5788999988754    22456788999999999999999999999999999999999987


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      .+..+.....     .+++.....++.|++.||+|||.   .+++|+||+|+||++++++.+||+|||++......    
T Consensus        86 ~l~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~  157 (288)
T cd07833          86 LLELLEASPG-----GLPPDAVRSYIWQLLQAIAYCHS---HNIIHRDIKPENILVSESGVLKLCDFGFARALRARPASP  157 (288)
T ss_pred             HHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCCEEEEeeecccccCCCcccc
Confidence            7776654322     47889999999999999999994   56999999999999999999999999998765432    


Q ss_pred             ---ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHH-HHHhh-c-----------
Q 006559          489 ---FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKW-VQMMG-Q-----------  552 (640)
Q Consensus       489 ---~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~-~~~~~-~-----------  552 (640)
                         ...+..|+|||++...      ..++.++||||||+++|||++|+.||.........| ..... .           
T Consensus       158 ~~~~~~~~~~~~PE~~~~~------~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (288)
T cd07833         158 LTDYVATRWYRAPELLVGD------TNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSS  231 (288)
T ss_pred             ccCcccccCCcCCchhcCC------CCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhccc
Confidence               2346779999975321      256789999999999999999999987432211111 10000 0           


Q ss_pred             ccccccccchhhccChHH-----HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          553 DESAWEVFDFELIMDKEM-----EEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       553 ~~~~~~~~d~~~~~~~~~-----~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ........-+........     .....++.+++.+||..+|++||+++++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  284 (288)
T cd07833         232 NPRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQ  284 (288)
T ss_pred             CccccccccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhc
Confidence            000000000000000000     012456888899999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=3.2e-33  Score=287.53  Aligned_cols=252  Identities=21%  Similarity=0.315  Sum_probs=183.3

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccC-CCcccceeEEEEcCCe-----EEEEE
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLR-HSNIVSIRAYCNGKDE-----LFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~-----~~lV~  406 (640)
                      .+.||+|+||.||+|... +++.||+|.++...    ....+.+|+.++++++ ||||+++++++...+.     .|+||
T Consensus         6 ~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~lv~   85 (295)
T cd07837           6 LEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSLYLVF   85 (295)
T ss_pred             eeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceEEEEe
Confidence            467999999999999964 68899999876542    2356778999999995 6999999999887655     89999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC-CCCeEEccCCccccc
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ-LGNACISDIGVHQLF  485 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~-~~~~kl~DfGl~~~~  485 (640)
                      ||+++ +|.+++..........+++..+..++.||+.||+|||+   .+|+||||||+||+++. ++.+||+|||+++.+
T Consensus        86 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~---~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~~  161 (295)
T cd07837          86 EYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHK---HGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAF  161 (295)
T ss_pred             eccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChHHEEEecCCCeEEEeecccceec
Confidence            99985 89888865432223468999999999999999999994   56999999999999998 899999999998765


Q ss_pred             CCC------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHH---hhcc-cc
Q 006559          486 HTP------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQM---MGQD-ES  555 (640)
Q Consensus       486 ~~~------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~---~~~~-~~  555 (640)
                      ...      ...+..|+|||++.      ....++.++|||||||++|||+||+.||..... .....+.   .... ..
T Consensus       162 ~~~~~~~~~~~~~~~~~aPE~~~------~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~  234 (295)
T cd07837         162 SIPVKSYTHEIVTLWYRAPEVLL------GSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSE-LQQLLHIFKLLGTPTEQ  234 (295)
T ss_pred             CCCccccCCcccccCCCChHHhh------CCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCH-HHHHHHHHHHhCCCChh
Confidence            322      23366799999652      223467899999999999999999999874321 1111111   1000 00


Q ss_pred             ccc-c---cc---hhhccCh----HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          556 AWE-V---FD---FELIMDK----EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       556 ~~~-~---~d---~~~~~~~----~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .+. .   .+   .......    ..+....++.+++.+||+.+|++||++.|++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~  290 (295)
T cd07837         235 VWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT  290 (295)
T ss_pred             hCcchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence            000 0   00   0000000    01122345778889999999999999998864

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=7.4e-33  Score=283.81  Aligned_cols=247  Identities=21%  Similarity=0.262  Sum_probs=185.8

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcC--CeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGK--DELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lV~Ey~~~  411 (640)
                      .+.||+|++|.||++... +++.+|+|.+....   ....+.+|++++++++||||++++++|...  +..++||||+++
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~   85 (287)
T cd06621           6 LSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAMEYCEG   85 (287)
T ss_pred             EEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEEecCC
Confidence            467999999999999974 57889999887542   345678899999999999999999998653  478999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      ++|.+++..... ....+++.....++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++.....    
T Consensus        86 ~~L~~~l~~~~~-~~~~l~~~~~~~i~~~i~~~L~~lH~---~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~  161 (287)
T cd06621          86 GSLDSIYKKVKK-RGGRIGEKVLGKIAESVLKGLSYLHS---RKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLAG  161 (287)
T ss_pred             CCHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEecCCeEEEeeccccccccccccc
Confidence            999988754221 12357888999999999999999995   5599999999999999999999999999875432    


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc---chHHHHHHhhcccccccccchhh
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL---GIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                      ....+..|+|||.+       ....++.++||||+||++|||+||+.||.....   ...+.......... .. .....
T Consensus       162 ~~~~~~~y~~pE~~-------~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~  232 (287)
T cd06621         162 TFTGTSFYMAPERI-------QGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPN-PE-LKDEP  232 (287)
T ss_pred             cccCCccccCHHHh-------cCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcCCc-hh-hccCC
Confidence            22346789999964       344577899999999999999999999975421   11222211111000 00 00000


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ...   ......+.+++.+||+.+|++|||+.|+++
T Consensus       233 ~~~---~~~~~~~~~li~~~l~~~p~~Rpt~~eil~  265 (287)
T cd06621         233 GNG---IKWSEEFKDFIKQCLEKDPTRRPTPWDMLE  265 (287)
T ss_pred             CCC---CchHHHHHHHHHHHcCCCcccCCCHHHHHh
Confidence            000   112345778889999999999999999876

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=4.3e-33  Score=284.40  Aligned_cols=248  Identities=18%  Similarity=0.251  Sum_probs=182.3

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc---chHHHHHHHHHHhccC-CCcccceeEEEEcC--CeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK---KKREVDEWLRVIGGLR-HSNIVSIRAYCNGK--DELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~--~~~~lV~Ey~~  410 (640)
                      .+.||+|+||.||+|+. .++..||+|+++...   .......|+..+.++. |+||+++++++.+.  +..++||||++
T Consensus         4 ~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e~~~   83 (282)
T cd07831           4 LGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFELMD   83 (282)
T ss_pred             EeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEecCC
Confidence            45799999999999985 468899999987541   2223446777888875 99999999999987  88999999997


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                       |+|.+++....    ..++|..+..++.|++.||+|||+   .+++||||||+||+++. +.+||+|||+++....   
T Consensus        84 -~~l~~~l~~~~----~~~~~~~~~~~~~qi~~~L~~LH~---~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~  154 (282)
T cd07831          84 -MNLYELIKGRK----RPLPEKRVKSYMYQLLKSLDHMHR---NGIFHRDIKPENILIKD-DILKLADFGSCRGIYSKPP  154 (282)
T ss_pred             -ccHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHH---CCceecccCHHHEEEcC-CCeEEEecccccccccCCC
Confidence             58888886543    258999999999999999999994   45999999999999999 9999999999876542   


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC-cchHHHHHHhhccccc--c-----
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGE-LGIVKWVQMMGQDESA--W-----  557 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~-~~~~~~~~~~~~~~~~--~-----  557 (640)
                        ....+..|+|||+..      ....++.++|||||||++|||++|+.||...+ .+...+..........  .     
T Consensus       155 ~~~~~~~~~y~aPE~~~------~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (282)
T cd07831         155 YTEYISTRWYRAPECLL------TDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRK  228 (282)
T ss_pred             cCCCCCCcccCChhHhh------cCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcc
Confidence              223467899999642      22346789999999999999999999997432 2222222211110000  0     


Q ss_pred             -cccchhhc--cC----hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          558 -EVFDFELI--MD----KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       558 -~~~d~~~~--~~----~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       ...+....  ..    .........+.+++.+||+++|++||++.++++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~  278 (282)
T cd07831         229 SRHMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALR  278 (282)
T ss_pred             cccccccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhh
Confidence             00000000  00    001123467888999999999999999999875

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=2.5e-33  Score=287.03  Aligned_cols=236  Identities=19%  Similarity=0.280  Sum_probs=185.3

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      .+.||+|++|.||++.. .++..+++|++...  ...+.+.+|+.+++.++||||+++++++...+..++|+||+++++|
T Consensus        24 ~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~~~L  103 (285)
T cd06648          24 FVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEGGAL  103 (285)
T ss_pred             ceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccCCCCH
Confidence            45799999999999985 46788999988644  2344577889999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------C
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------P  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------~  488 (640)
                      .+++...      ++++..+..++.|++.||+|||+   .+|+||||+|+||+++.++.++|+|||++.....      .
T Consensus       104 ~~~~~~~------~~~~~~~~~~~~ql~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~~~~  174 (285)
T cd06648         104 TDIVTHT------RMNEEQIATVCLAVLKALSFLHA---QGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKS  174 (285)
T ss_pred             HHHHHhC------CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCChhhEEEcCCCcEEEcccccchhhccCCccccc
Confidence            9998752      47889999999999999999995   4599999999999999999999999998765432      1


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..++..|+|||..       ....++.++|||||||++|||++|+.||....  .....+...... .     +..... 
T Consensus       175 ~~~~~~y~aPE~~-------~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~--~~~~~~~~~~~~-~-----~~~~~~-  238 (285)
T cd06648         175 LVGTPYWMAPEVI-------SRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEP--PLQAMKRIRDNL-P-----PKLKNL-  238 (285)
T ss_pred             ccCCccccCHHHh-------cCCCCCCcccHHHHHHHHHHHHhCCCCCcCCC--HHHHHHHHHhcC-C-----CCCccc-
Confidence            2357789999964       33456789999999999999999999986432  122222211110 0     000000 


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                        ......+.+++.+||+.+|++||++.++++
T Consensus       239 --~~~~~~l~~li~~~l~~~p~~Rpt~~~il~  268 (285)
T cd06648         239 --HKVSPRLRSFLDRMLVRDPAQRATAAELLN  268 (285)
T ss_pred             --ccCCHHHHHHHHHHcccChhhCcCHHHHcc
Confidence              112235778888899999999999998875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=6e-33  Score=280.92  Aligned_cols=235  Identities=20%  Similarity=0.324  Sum_probs=177.6

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc-------chHHHHHHHHHHhccCCCcccceeEEEEcC--CeEEEEEe
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-------KKREVDEWLRVIGGLRHSNIVSIRAYCNGK--DELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lV~E  407 (640)
                      .++||+|+||.||+|.. .++..||+|.+....       ..+.+.+|++++++++||||+++++++.+.  ..+++|||
T Consensus         7 ~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e   86 (265)
T cd06652           7 GKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTLSIFME   86 (265)
T ss_pred             eeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceEEEEEE
Confidence            56899999999999986 458899999875321       124567799999999999999999988763  46889999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      |+++|+|.+++....     .+++....+++.|++.||+|||+   .+|+|+||||+||+++.++.+||+|||+++....
T Consensus        87 ~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~  158 (265)
T cd06652          87 HMPGGSIKDQLKSYG-----ALTENVTRKYTRQILEGVSYLHS---NMIVHRDIKGANILRDSVGNVKLGDFGASKRLQT  158 (265)
T ss_pred             ecCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEecCCCCEEECcCcccccccc
Confidence            999999999987542     47788889999999999999995   4599999999999999999999999999875431


Q ss_pred             ---------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccc
Q 006559          488 ---------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE  558 (640)
Q Consensus       488 ---------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  558 (640)
                               ...++..|+|||++       ....++.++|||||||++|||++|+.||..... .....+. .....   
T Consensus       159 ~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~-~~~~~~~-~~~~~---  226 (265)
T cd06652         159 ICLSGTGMKSVTGTPYWMSPEVI-------SGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEA-MAAIFKI-ATQPT---  226 (265)
T ss_pred             ccccccccccCCCCccccChhhh-------cCCCCCcchhHHHHHHHHHHHhhCCCCCCccch-HHHHHHH-hcCCC---
Confidence                     12356789999964       334567899999999999999999999964321 1111111 11000   


Q ss_pred             ccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       559 ~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                        .+  ..+.   .....+.+++.+|+. +|++||+++++++
T Consensus       227 --~~--~~~~---~~~~~~~~~i~~~l~-~p~~Rp~~~~il~  260 (265)
T cd06652         227 --NP--VLPP---HVSDHCRDFLKRIFV-EAKLRPSADELLR  260 (265)
T ss_pred             --CC--CCch---hhCHHHHHHHHHHhc-ChhhCCCHHHHhc
Confidence              00  0111   122344556666774 8999999998864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=3.1e-33  Score=281.34  Aligned_cols=237  Identities=23%  Similarity=0.376  Sum_probs=185.6

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|... +|..+|+|.+...    ...+.+.+|+.++++++|+||+++++.+...+..++|+||++++
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (257)
T cd08225           5 IKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEYCDGG   84 (257)
T ss_pred             EEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEecCCCC
Confidence            467999999999999965 5788999998653    23456778999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC-CeEEccCCcccccCCC---
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG-NACISDIGVHQLFHTP---  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~-~~kl~DfGl~~~~~~~---  488 (640)
                      +|.+++....+   ..+++..+..++.|++.||+|||+   .+++|+||||+||++++++ .+||+|||.+......   
T Consensus        85 ~L~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lh~---~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~  158 (257)
T cd08225          85 DLMKRINRQRG---VLFSEDQILSWFVQISLGLKHIHD---RKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMEL  158 (257)
T ss_pred             cHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEEcCCCCeEEecccccchhccCCccc
Confidence            99999875432   247899999999999999999995   4599999999999999885 4699999998765432   


Q ss_pred             ---ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          489 ---FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       489 ---~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                         ..++..|+|||+.       ....++.++|||||||++|||++|+.||....  ..+++.......     ..+   
T Consensus       159 ~~~~~~~~~~~ape~~-------~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~~~-----~~~---  221 (257)
T cd08225         159 AYTCVGTPYYLSPEIC-------QNRPYNNKTDIWSLGCVLYELCTLKHPFEGNN--LHQLVLKICQGY-----FAP---  221 (257)
T ss_pred             ccccCCCccccCHHHH-------cCCCCCchhhHHHHHHHHHHHHhCCCCCCCcc--HHHHHHHHhccc-----CCC---
Confidence               2346679999964       33456789999999999999999999996432  222222221111     000   


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..+   ....++.+++.+||+.+|++|||+.++++
T Consensus       222 ~~~---~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~  253 (257)
T cd08225         222 ISP---NFSRDLRSLISQLFKVSPRDRPSITSILK  253 (257)
T ss_pred             CCC---CCCHHHHHHHHHHhccChhhCcCHHHHhh
Confidence            001   11234667788899999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=4e-33  Score=285.79  Aligned_cols=248  Identities=21%  Similarity=0.265  Sum_probs=181.4

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc---cchHHHHHHHHHHhccC-CCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER---KKKREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+++.. ++..||+|.+...   .....+..|+.++.++. |+||+++++++..++..+++|||++. 
T Consensus         9 ~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~~~~-   87 (288)
T cd06616           9 LGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMELMDI-   87 (288)
T ss_pred             HHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEecccC-
Confidence            467999999999999854 5789999998754   23456778888888886 99999999999998999999999864 


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      ++.++...........+++.....++.|++.||+|||+.  .+|+||||||+||+++.++.+||+|||+++.....    
T Consensus        88 ~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~  165 (288)
T cd06616          88 SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEE--LKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIAKT  165 (288)
T ss_pred             CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhc--CCeeccCCCHHHEEEccCCcEEEeecchhHHhccCCccc
Confidence            554433210000113588999999999999999999953  36999999999999999999999999998765322    


Q ss_pred             -ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          489 -FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       489 -~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                       ..++..|+|||++....    ...++.++|||||||++|||++|+.||.... .....+........      +.+...
T Consensus       166 ~~~~~~~y~aPE~~~~~~----~~~~~~~~Di~slG~il~el~~g~~p~~~~~-~~~~~~~~~~~~~~------~~~~~~  234 (288)
T cd06616         166 RDAGCRPYMAPERIDPSA----RDGYDVRSDVWSLGITLYEVATGKFPYPKWN-SVFDQLTQVVKGDP------PILSNS  234 (288)
T ss_pred             cccCccCccCHHHhcccc----ccCCcchhhhhHHHHHHHHHHhCCCCchhcc-hHHHHHhhhcCCCC------CcCCCc
Confidence             23467899999753211    1357789999999999999999999996432 11111111111000      011000


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       .......++.+++.+||+.+|++||++.+|++
T Consensus       235 -~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~  266 (288)
T cd06616         235 -EEREFSPSFVNFINLCLIKDESKRPKYKELLE  266 (288)
T ss_pred             -CCCccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence             00123345778888999999999999999875

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=6.4e-33  Score=283.48  Aligned_cols=250  Identities=21%  Similarity=0.351  Sum_probs=185.2

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|++|.||+|.. .+|..||+|++....    ....+..|++++++++|||++++++++...+..|+||||++ +
T Consensus         4 ~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~~-~   82 (283)
T cd07835           4 VEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFLD-L   82 (283)
T ss_pred             heEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEeccC-c
Confidence            46799999999999986 468999999986442    23457789999999999999999999999999999999995 6


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.+++.....   ..+++..+..++.|+++||+|||+   .+++||||+|+||+++.++.++|+|||+++.....    
T Consensus        83 ~l~~~~~~~~~---~~~~~~~~~~~~~~i~~~L~~lH~---~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~~  156 (283)
T cd07835          83 DLKKYMDSSPL---TGLDPPLIKSYLYQLLQGIAYCHS---HRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTY  156 (283)
T ss_pred             CHHHHHhhCCC---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCHHHEEEcCCCcEEEeecccccccCCCcccc
Confidence            99999875431   258899999999999999999995   46999999999999999999999999998765321    


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc--hHHHHHHhhccc-cccc----c
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG--IVKWVQMMGQDE-SAWE----V  559 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~--~~~~~~~~~~~~-~~~~----~  559 (640)
                        ...+..|+|||++.+      ...++.++|||||||++|||+||+.||...+..  .....+...... ..+.    .
T Consensus       157 ~~~~~~~~~~aPE~~~~------~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (283)
T cd07835         157 THEVVTLWYRAPEILLG------SRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSL  230 (283)
T ss_pred             CccccccCCCCCceeec------CcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhc
Confidence              223667999996522      234567899999999999999999999753321  111111111100 0000    0


Q ss_pred             cch-----hhcc---ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 FDF-----ELIM---DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 ~d~-----~~~~---~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      -+.     ....   ..........+.+++.+|++.+|++||++.|+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~  279 (283)
T cd07835         231 PDYKPTFPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQ  279 (283)
T ss_pred             hhhhhhcccccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence            000     0000   0000111245778899999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=8.3e-33  Score=289.07  Aligned_cols=257  Identities=19%  Similarity=0.239  Sum_probs=186.7

Q ss_pred             cccccc--CcceEEEEEe-CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKG--CVGATYKVVL-DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G--~fg~Vy~~~~-~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      +.||+|  +||+||+++. ..|+.||+|.+....    ..+.+.+|+.+++.++||||++++++|...+..++||||+++
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~   83 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY   83 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence            356776  8999999986 478999999987542    124577888899999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++.....   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+|++||+.......    
T Consensus        84 ~~l~~~l~~~~~---~~~~~~~~~~~~~qi~~aL~~lH~---~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~  157 (328)
T cd08226          84 GSANSLLKTYFP---EGMSEALIGNILFGALRGLNYLHQ---NGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQK  157 (328)
T ss_pred             CCHHHHHHhhcc---cCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCcc
Confidence            999999875431   247888899999999999999994   5699999999999999999999999975432210    


Q ss_pred             -------C--ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccc-ccc
Q 006559          488 -------P--FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDE-SAW  557 (640)
Q Consensus       488 -------~--~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~-~~~  557 (640)
                             .  ...+..|+|||++...     ...++.++|||||||++|||++|+.||......... ........ ..+
T Consensus       158 ~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~-~~~~~~~~~~~~  231 (328)
T cd08226         158 AKVVYDFPQFSTSVLPWLSPELLRQD-----LYGYNVKSDIYSVGITACELATGRVPFQDMLRTQML-LQKLKGPPYSPL  231 (328)
T ss_pred             ccccccccccccCccCccChhhhcCC-----CCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHH-HHHhcCCCCCCc
Confidence                   0  1124469999975322     134678999999999999999999999743211111 00000000 000


Q ss_pred             ----------------------------------cccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHH--HH
Q 006559          558 ----------------------------------EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVH--RM  601 (640)
Q Consensus       558 ----------------------------------~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~--~~  601 (640)
                                                        .+.+..+ ..+........+.+++.+||+.||++|||+.|++  ..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~~~  310 (328)
T cd08226         232 DITTFPCEESRMKNSQSGVDSGIGESVVAAGMTQTMTSERL-RTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSHAF  310 (328)
T ss_pred             cccccchhhhhhccchhhhhcccccchhccccccccccccc-cchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhCHH
Confidence                                              0000000 0111223445788899999999999999999995  46


Q ss_pred             HHHhhcc
Q 006559          602 IEDIRTK  608 (640)
Q Consensus       602 L~~i~~~  608 (640)
                      ++.+...
T Consensus       311 ~~~~~~~  317 (328)
T cd08226         311 FKQVKEQ  317 (328)
T ss_pred             HHHHHHh
Confidence            6666543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.4e-33  Score=290.43  Aligned_cols=237  Identities=22%  Similarity=0.300  Sum_probs=183.0

Q ss_pred             hccccccCcceEEEEEeCC-CcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLDG-GDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|...+ +..||+|.+....     ..+.+.+|+++++.++|+||+++++.+......|+||||+++
T Consensus         6 ~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~   85 (316)
T cd05574           6 IKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMDYCPG   85 (316)
T ss_pred             eeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEEecCC
Confidence            4579999999999999654 8899999987542     234577889999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      ++|.+++....   ...+++.....++.|++.||+|||.   .+++|+||||+||+++.++.++|+|||++.....    
T Consensus        86 ~~L~~~~~~~~---~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~  159 (316)
T cd05574          86 GELFRLLQRQP---GKCLSEEVARFYAAEVLLALEYLHL---LGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPP  159 (316)
T ss_pred             CCHHHHHHhCC---CCccCHHHHHHHHHHHHHHHHHHHH---CCeeccCCChHHeEEcCCCCEEEeecchhhcccccccc
Confidence            99999987542   1258899999999999999999994   5699999999999999999999999998765421    


Q ss_pred             -------------------------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCC
Q 006559          488 -------------------------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAK  536 (640)
Q Consensus       488 -------------------------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~  536 (640)
                                                     ...++..|+|||++       ....++.++|||||||++|||++|+.||
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~-------~~~~~~~~~Di~slG~ll~~l~~g~~pf  232 (316)
T cd05574         160 VSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVI-------SGDGHGSAVDWWTLGILLYEMLYGTTPF  232 (316)
T ss_pred             cccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHH-------cCCCCCchHHHHHHHHHHHHHhhCCCCC
Confidence                                           11346679999964       3345678999999999999999999999


Q ss_pred             CCCCcchHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 006559          537 GDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVH  599 (640)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~  599 (640)
                      ...... ..+.+.....          ..... .......+.+++.+||+.+|++||++...+
T Consensus       233 ~~~~~~-~~~~~~~~~~----------~~~~~-~~~~~~~~~~li~~~l~~~p~~R~s~~~~~  283 (316)
T cd05574         233 KGSNRD-ETFSNILKKE----------VTFPG-SPPVSSSARDLIRKLLVKDPSKRLGSKRGA  283 (316)
T ss_pred             CCCchH-HHHHHHhcCC----------ccCCC-ccccCHHHHHHHHHHccCCHhHCCCchhhH
Confidence            743321 1111111110          00000 011234577788889999999999944443

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=6.5e-33  Score=282.88  Aligned_cols=236  Identities=20%  Similarity=0.238  Sum_probs=177.6

Q ss_pred             cccccCcceEEEEEe-CCCcEEEEEEeccccc-----hHHHHHH---HHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          340 LLGKGCVGATYKVVL-DGGDVVVVKRIRERKK-----KREVDEW---LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~-----~~~~~~e---~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      +||+|+||.||+++. ..++.||+|.+.....     ...+..|   ++.++...||||+++.+++...+..++||||++
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            489999999999985 4588999998865411     1122233   334555689999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                      +|+|.+++....     .+++..+..++.|+++||+|||+   .+|+||||||+||+++.++.+||+|||+++....   
T Consensus        81 g~~L~~~l~~~~-----~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~  152 (278)
T cd05606          81 GGDLHYHLSQHG-----VFSEAEMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP  152 (278)
T ss_pred             CCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCEEcCCCCHHHEEECCCCCEEEccCcCccccCccCC
Confidence            999999886432     58999999999999999999994   5599999999999999999999999999875532   


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                       ...++..|+|||+..      ....++.++||||+||++|||++|+.||.................      .+..+  
T Consensus       153 ~~~~~~~~y~aPE~~~------~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~------~~~~~--  218 (278)
T cd05606         153 HASVGTHGYMAPEVLQ------KGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLT------MAVEL--  218 (278)
T ss_pred             cCcCCCcCCcCcHHhc------CCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHHHHhhc------cCCCC--
Confidence             234578899999642      123467899999999999999999999975422111111111000      01111  


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRP-----NMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RP-----s~~~v~~  600 (640)
                      +..   ...++.+++.+|+..+|++||     ++.++.+
T Consensus       219 ~~~---~s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~  254 (278)
T cd05606         219 PDS---FSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  254 (278)
T ss_pred             CCc---CCHHHHHHHHHHhhcCHHhccCCCCCCHHHHHh
Confidence            111   123566777889999999999     8888864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=8.1e-33  Score=288.90  Aligned_cols=237  Identities=19%  Similarity=0.287  Sum_probs=189.7

Q ss_pred             hccccccCcceEEEEEeCC-CcEEEEEEecccc-----chHHHHHHHHHHhccC-CCcccceeEEEEcCCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLDG-GDVVVVKRIRERK-----KKREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      .+.||+|.||.||+++.+. |+.+|+|.+.+..     ....+.+|+++|+++. |||||.+.++|...+..++|||++.
T Consensus        40 ~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~lvmEL~~  119 (382)
T KOG0032|consen   40 GRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYLVMELCE  119 (382)
T ss_pred             hhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEEEEEecC
Confidence            4789999999999999765 8999999997652     2357889999999998 9999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC----CCeEEccCCcccccC
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL----GNACISDIGVHQLFH  486 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~----~~~kl~DfGl~~~~~  486 (640)
                      +|.|.+.+...      .++......++.|++.++.|||+   .+|+||||||+|+|+...    +.+|++|||++....
T Consensus       120 GGeLfd~i~~~------~~sE~da~~~~~~il~av~~lH~---~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~  190 (382)
T KOG0032|consen  120 GGELFDRIVKK------HYSERDAAGIIRQILEAVKYLHS---LGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIK  190 (382)
T ss_pred             CchHHHHHHHc------cCCHHHHHHHHHHHHHHHHHHHh---CCceeccCCHHHeeeccccCCCCcEEEeeCCCceEcc
Confidence            99999998754      27888999999999999999995   569999999999999643    579999999998876


Q ss_pred             CC-----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccc
Q 006559          487 TP-----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFD  561 (640)
Q Consensus       487 ~~-----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  561 (640)
                      ..     .++|+.|+|||++       ....|+..+||||.||++|.|+.|.+||.......... .. ...+  +++.+
T Consensus       191 ~~~~~~~~~Gtp~y~APEvl-------~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~-~i-~~~~--~~f~~  259 (382)
T KOG0032|consen  191 PGERLHTIVGTPEYVAPEVL-------GGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFL-AI-LRGD--FDFTS  259 (382)
T ss_pred             CCceEeeecCCccccCchhh-------cCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHH-HH-HcCC--CCCCC
Confidence            52     4679999999975       33677889999999999999999999998644222111 11 1100  01111


Q ss_pred             hhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       562 ~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      +      ........+-+++..|+..||.+|+++.++++
T Consensus       260 ~------~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~  292 (382)
T KOG0032|consen  260 E------PWDDISESAKDFIRKLLEFDPRKRLTAAQALQ  292 (382)
T ss_pred             C------CccccCHHHHHHHHHhcccCcccCCCHHHHhc
Confidence            1      11122334555666799999999999999987

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=1.1e-32  Score=278.22  Aligned_cols=239  Identities=24%  Similarity=0.376  Sum_probs=188.9

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|++|.||+++.. ++..|+||++....   ..+.+..|++.+.+++|+||+++++++...+..++||||+++++
T Consensus         6 ~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~   85 (264)
T cd06623           6 VKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYMDGGS   85 (264)
T ss_pred             eeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEecCCCc
Confidence            467999999999999976 48899999987653   35678889999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-----
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-----  488 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-----  488 (640)
                      |.+++....     ++++..+..++.|+++||+|||+  ..+++||||+|+||+++.++.++|+|||++......     
T Consensus        86 L~~~l~~~~-----~l~~~~~~~~~~~l~~~l~~lh~--~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~~  158 (264)
T cd06623          86 LADLLKKVG-----KIPEPVLAYIARQILKGLDYLHT--KRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCN  158 (264)
T ss_pred             HHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHhc--cCCCccCCCCHHHEEECCCCCEEEccCccceecccCCCccc
Confidence            999997542     58899999999999999999994  056999999999999999999999999998765431     


Q ss_pred             -ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHHHHHHhhcccccccccchhhcc
Q 006559          489 -FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 -~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                       ...+..|+|||..       ....++.++||||||+++|||+||+.||..... ......+......      .+..  
T Consensus       159 ~~~~~~~y~~pE~~-------~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~------~~~~--  223 (264)
T cd06623         159 TFVGTVTYMSPERI-------QGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAICDGP------PPSL--  223 (264)
T ss_pred             ceeecccccCHhhh-------CCCCCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHhcCC------CCCC--
Confidence             2346789999964       334667899999999999999999999975431 1111111111100      0000  


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ...  .....+.+++..||+++|++||++.++++
T Consensus       224 ~~~--~~~~~l~~li~~~l~~~p~~R~~~~~ll~  255 (264)
T cd06623         224 PAE--EFSPEFRDFISACLQKDPKKRPSAAELLQ  255 (264)
T ss_pred             Ccc--cCCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence            011  02345777788899999999999999976

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.4e-34  Score=292.37  Aligned_cols=245  Identities=18%  Similarity=0.278  Sum_probs=188.0

Q ss_pred             HHhhccccccCcceEEEEEeCCCcEEEEEEeccc----cchHHHHHHHHHHhccC-CCcccceeEEEEcCCeEEEEEecc
Q 006559          335 KSSAELLGKGCVGATYKVVLDGGDVVVVKRIRER----KKKREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       335 ~~~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ....+.||+||.+.||++.-.+.+.+|+|++...    +.-..|..|+..|.+|+ |.+||+|++|-..++.+||||||-
T Consensus       363 Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE~G  442 (677)
T KOG0596|consen  363 YEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVMECG  442 (677)
T ss_pred             hhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEeecc
Confidence            3456789999999999999888889998887644    23356889999999996 899999999999999999999986


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--  487 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--  487 (640)
                      + -+|..+|+....   ...+| .+..+..|++.++.++|   +.+|||.||||.|.|+-. |.+||+|||+|.....  
T Consensus       443 d-~DL~kiL~k~~~---~~~~~-~lk~ywkqML~aV~~IH---~~gIVHSDLKPANFLlVk-G~LKLIDFGIA~aI~~DT  513 (677)
T KOG0596|consen  443 D-IDLNKILKKKKS---IDPDW-FLKFYWKQMLLAVKTIH---QHGIVHSDLKPANFLLVK-GRLKLIDFGIANAIQPDT  513 (677)
T ss_pred             c-ccHHHHHHhccC---CCchH-HHHHHHHHHHHHHHHHH---HhceeecCCCcccEEEEe-eeEEeeeechhcccCccc
Confidence            4 499999987653   23456 67789999999999999   556999999999999865 7899999999987643  


Q ss_pred             ------CccccccccCCccccCCCCcc----ccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccc
Q 006559          488 ------PFFINDAYNAPELKFNNNNNY----SQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAW  557 (640)
Q Consensus       488 ------~~~~~~~y~aPE~~~~~~~~~----~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  557 (640)
                            ..++|..||+||.+.......    ..-+.+.++||||+||+||+|+.|+.||+.-.   -.|.+.       .
T Consensus       514 TsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~---n~~aKl-------~  583 (677)
T KOG0596|consen  514 TSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQII---NQIAKL-------H  583 (677)
T ss_pred             cceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHH---HHHHHH-------H
Confidence                  346799999999765332221    12347789999999999999999999996421   122222       2


Q ss_pred             cccchhh--ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          558 EVFDFEL--IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       558 ~~~d~~~--~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .+.|+.-  ..+..  ....+++++|..||+.||++||+..|+++
T Consensus       584 aI~~P~~~Iefp~~--~~~~~li~~mK~CL~rdPkkR~si~eLLq  626 (677)
T KOG0596|consen  584 AITDPNHEIEFPDI--PENDELIDVMKCCLARDPKKRWSIPELLQ  626 (677)
T ss_pred             hhcCCCccccccCC--CCchHHHHHHHHHHhcCcccCCCcHHHhc
Confidence            2233311  11111  11123888999999999999999999874

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-34  Score=295.82  Aligned_cols=240  Identities=18%  Similarity=0.305  Sum_probs=188.2

Q ss_pred             cccccCcceEEEEEeCCC-cEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHH
Q 006559          340 LLGKGCVGATYKVVLDGG-DVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~~~-~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~  416 (640)
                      .||.|+||.||+++.+.. -..|.|.+...  ..-++|.-||.+|...+||+||+|++.|+-.+.+||..|||++|-...
T Consensus        39 ELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~GGAVDa  118 (1187)
T KOG0579|consen   39 ELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCGGGAVDA  118 (1187)
T ss_pred             hhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecCCchHhH
Confidence            489999999999996654 44567776544  234567788999999999999999999999999999999999999988


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccccc------CCCcc
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF------HTPFF  490 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~------~~~~~  490 (640)
                      ++-.-.    .++...++..++.|++.||.|||+.+   |||||||+.|||+.-+|.++|+|||++...      ...++
T Consensus       119 imlEL~----r~LtE~QIqvvc~q~ldALn~LHs~~---iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~qkRDsFI  191 (1187)
T KOG0579|consen  119 IMLELG----RVLTEDQIQVVCYQVLDALNWLHSQN---IIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQKRDSFI  191 (1187)
T ss_pred             HHHHhc----cccchHHHHHHHHHHHHHHHHHhhcc---hhhhhccccceEEEecCcEeeecccccccchhHHhhhcccc
Confidence            776543    26889999999999999999999654   999999999999999999999999997543      24678


Q ss_pred             ccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChHH
Q 006559          491 INDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEM  570 (640)
Q Consensus       491 ~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  570 (640)
                      +|++|||||+.+..  ......|+.++||||||+.|.||.-+.+|..+-  +....+-.+...+      -+.+..+   
T Consensus       192 GTPYWMAPEVvmCE--T~KD~PYDykaDiWSlGITLIEMAqiEPPHhel--npMRVllKiaKSe------PPTLlqP---  258 (1187)
T KOG0579|consen  192 GTPYWMAPEVVMCE--TFKDQPYDYKADIWSLGITLIEMAQIEPPHHEL--NPMRVLLKIAKSE------PPTLLQP---  258 (1187)
T ss_pred             CCcccccchheeec--cccCCCchhhhhHHhhhhHHHHHhccCCCcccc--chHHHHHHHhhcC------CCcccCc---
Confidence            99999999987654  456678999999999999999999999997642  1111111111110      1122222   


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 006559          571 EEEMRALLQVALLCLAPLPKDRPNMSIVH  599 (640)
Q Consensus       571 ~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~  599 (640)
                      +.+...+-++...|+..+|..||++++++
T Consensus       259 S~Ws~~F~DfLk~cL~Knp~~Rp~aaqll  287 (1187)
T KOG0579|consen  259 SHWSRSFSDFLKRCLVKNPRNRPPAAQLL  287 (1187)
T ss_pred             chhhhHHHHHHHHHHhcCCccCCCHHHHh
Confidence            23444566666779999999999999886

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=2.9e-33  Score=282.00  Aligned_cols=233  Identities=19%  Similarity=0.258  Sum_probs=184.5

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+.. ++..||+|.+...     ...+.+.+|++++++++||||+++++++......++|+||+++
T Consensus         5 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   84 (258)
T cd05578           5 LRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVDLLLG   84 (258)
T ss_pred             EEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEeCCCC
Confidence            467999999999999965 5888999998754     2235678899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---  488 (640)
                      ++|.+++....     ++++.....++.|+++||.|||+   .+++|+||+|+||++++++.++|+|||++......   
T Consensus        85 ~~L~~~l~~~~-----~l~~~~~~~~~~~i~~~l~~lh~---~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~  156 (258)
T cd05578          85 GDLRYHLSQKV-----KFSEEQVKFWICEIVLALEYLHS---KGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLT  156 (258)
T ss_pred             CCHHHHHHhcC-----CcCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeEEcCCCCEEEeecccccccCCCccc
Confidence            99999997542     57889999999999999999994   45999999999999999999999999998765432   


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                        ..++..|+|||+.       ....++.++||||||+++|+|++|+.||.........+.......        .....
T Consensus       157 ~~~~~~~~y~~PE~~-------~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~--------~~~~~  221 (258)
T cd05578         157 TSTSGTPGYMAPEVL-------CRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQET--------ADVLY  221 (258)
T ss_pred             cccCCChhhcCHHHH-------cccCCCCcccchhhHHHHHHHHhCCCCCCCCCccHHHHHHHHhcc--------ccccC
Confidence              3346689999964       334477899999999999999999999975433222222211111        00001


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMS  596 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~  596 (640)
                      +.   .....+.+++.+||+.||++||++.
T Consensus       222 ~~---~~~~~~~~~i~~~l~~~p~~R~~~~  248 (258)
T cd05578         222 PA---TWSTEAIDAINKLLERDPQKRLGDN  248 (258)
T ss_pred             cc---cCcHHHHHHHHHHccCChhHcCCcc
Confidence            11   1224567788889999999999993

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=3.6e-33  Score=281.80  Aligned_cols=236  Identities=22%  Similarity=0.335  Sum_probs=184.1

Q ss_pred             ccccCcceEEEEEeCC-CcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          341 LGKGCVGATYKVVLDG-GDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       341 iG~G~fg~Vy~~~~~~-~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ||+|+||.||+++... ++.+++|.+....     ..+.+.+|++++++++||||+++++.+......|+||||+++++|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            6899999999999764 8899999986542     234577889999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC------
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP------  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~------  488 (640)
                      .+++....     .+++..+..++.|++.||+|||   ..+++|+||+|+||++++++.+||+|||++......      
T Consensus        81 ~~~l~~~~-----~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~  152 (265)
T cd05579          81 ASLLENVG-----SLDEDVARIYIAEIVLALEYLH---SNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLN  152 (265)
T ss_pred             HHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH---HcCeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccc
Confidence            99997543     5789999999999999999999   456999999999999999999999999997654321      


Q ss_pred             --------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccccc
Q 006559          489 --------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVF  560 (640)
Q Consensus       489 --------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  560 (640)
                              ...+..|++||...       ....+.++||||||+++||++||+.||......  ...........     
T Consensus       153 ~~~~~~~~~~~~~~~~~Pe~~~-------~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~--~~~~~~~~~~~-----  218 (265)
T cd05579         153 DDEKEDKRIVGTPDYIAPEVIL-------GQGHSKTVDWWSLGCILYEFLVGIPPFHGETPE--EIFQNILNGKI-----  218 (265)
T ss_pred             cccccccCcccCccccCHHHhc-------CCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHhcCCc-----
Confidence                    23456799999643       334677899999999999999999999754321  11111111000     


Q ss_pred             chhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 006559          561 DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIE  603 (640)
Q Consensus       561 d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~  603 (640)
                      .    .... ......+.+++.+||+.+|++||++.++.+.|+
T Consensus       219 ~----~~~~-~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~  256 (265)
T cd05579         219 E----WPED-VEVSDEAIDLISKLLVPDPEKRLGAKSIEEIKN  256 (265)
T ss_pred             C----CCcc-ccCCHHHHHHHHHHhcCCHhhcCCCccHHHHhc
Confidence            0    0000 011345677888899999999999977766654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=4.3e-33  Score=292.13  Aligned_cols=249  Identities=20%  Similarity=0.286  Sum_probs=183.8

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccccch----------------HHHHHHHHHHhccCCCcccceeEEEEcC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERKKK----------------REVDEWLRVIGGLRHSNIVSIRAYCNGK  399 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~~----------------~~~~~e~~~l~~l~H~niv~l~~~~~~~  399 (640)
                      ..+.||+|+||.||+|+.. +++.||||.++.....                ..+.+|+++++.++|+||+++++++...
T Consensus        13 ~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   92 (335)
T PTZ00024         13 KGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEG   92 (335)
T ss_pred             hhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecC
Confidence            3567999999999999854 6889999988644211                2466899999999999999999999999


Q ss_pred             CeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccC
Q 006559          400 DELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDI  479 (640)
Q Consensus       400 ~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~Df  479 (640)
                      +..++||||++ |+|.+++....     .+++.....++.|++.||+|||+   .+|+||||||+||+++.++.+||+||
T Consensus        93 ~~~~lv~e~~~-~~l~~~l~~~~-----~~~~~~~~~~~~ql~~aL~~LH~---~~i~H~dl~~~nill~~~~~~kl~df  163 (335)
T PTZ00024         93 DFINLVMDIMA-SDLKKVVDRKI-----RLTESQVKCILLQILNGLNVLHK---WYFMHRDLSPANIFINSKGICKIADF  163 (335)
T ss_pred             CcEEEEEeccc-cCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeecccccHHHeEECCCCCEEECCc
Confidence            99999999997 69999986432     47888999999999999999994   56999999999999999999999999


Q ss_pred             CcccccCC--------------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 006559          480 GVHQLFHT--------------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG  539 (640)
Q Consensus       480 Gl~~~~~~--------------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~  539 (640)
                      |+++....                    ....+..|+|||.+.+      ...++.++|||||||++|||+||+.||...
T Consensus       164 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~~Dv~slG~~l~el~tg~~p~~~~  237 (335)
T PTZ00024        164 GLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMG------AEKYHFAVDMWSVGCIFAELLTGKPLFPGE  237 (335)
T ss_pred             cceeecccccccccccccccccccccccccccccCCCCChhccc------CCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99876541                    1123567999997532      234578999999999999999999999743


Q ss_pred             Cc-chHHHHHH-hhccc-cccc-c-----cch-hhccChH----HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          540 EL-GIVKWVQM-MGQDE-SAWE-V-----FDF-ELIMDKE----MEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       540 ~~-~~~~~~~~-~~~~~-~~~~-~-----~d~-~~~~~~~----~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      +. .....+.. ..... ..+. .     ..+ ....+..    ......++.+++..|++.+|++||++.+++.
T Consensus       238 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  312 (335)
T PTZ00024        238 NEIDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALK  312 (335)
T ss_pred             CHHHHHHHHHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhc
Confidence            32 11111111 11000 0000 0     000 0000000    1112345778889999999999999999975

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=1.3e-32  Score=281.71  Aligned_cols=238  Identities=22%  Similarity=0.356  Sum_probs=187.7

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccccc-hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERKK-KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~-~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      .+.||+|+||.||+|... ++..+++|.+..... .+.+..|++.+++++|+||+++++++...+..++|+||+++++|.
T Consensus        24 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~  103 (286)
T cd06614          24 LEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLT  103 (286)
T ss_pred             hHhccCCCCeEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEeccCCCcHH
Confidence            467999999999999976 678899999876533 566788999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC------c
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP------F  489 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~------~  489 (640)
                      +++....    ..+++..+..++.|++.||+|||.   .+|+|+||+|+||+++.++.++|+|||++......      .
T Consensus       104 ~~l~~~~----~~l~~~~~~~i~~~i~~~L~~lH~---~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~  176 (286)
T cd06614         104 DIITQNF----VRMNEPQIAYVCREVLQGLEYLHS---QNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSV  176 (286)
T ss_pred             HHHHHhc----cCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCChhhEEEcCCCCEEECccchhhhhccchhhhccc
Confidence            9998643    258999999999999999999994   56999999999999999999999999987654321      2


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChH
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKE  569 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  569 (640)
                      ..+..|++||++       ....++.++|||||||++|||+||+.||......  .......... ...     .   ..
T Consensus       177 ~~~~~y~~PE~~-------~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~--~~~~~~~~~~-~~~-----~---~~  238 (286)
T cd06614         177 VGTPYWMAPEVI-------KRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPL--RALFLITTKG-IPP-----L---KN  238 (286)
T ss_pred             cCCcccCCHhHh-------cCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhcC-CCC-----C---cc
Confidence            346689999964       3345678999999999999999999998743211  1111111100 000     0   01


Q ss_pred             HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          570 MEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       570 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .......+.+++.+||+.+|.+||++.++++
T Consensus       239 ~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~  269 (286)
T cd06614         239 PEKWSPEFKDFLNKCLVKDPEKRPSAEELLQ  269 (286)
T ss_pred             hhhCCHHHHHHHHHHhccChhhCcCHHHHhh
Confidence            1112345677888899999999999999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=6.9e-33  Score=284.85  Aligned_cols=248  Identities=21%  Similarity=0.372  Sum_probs=182.9

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccccc----hHHHHHHHHHHhccCCCcccceeEEEEcC--CeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERKK----KREVDEWLRVIGGLRHSNIVSIRAYCNGK--DELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~----~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lV~Ey~~  410 (640)
                      .+.||+|+||.||+|... +++.+|+|.++....    ...+.+|+.++.+++||||+++++++...  +..|+||||++
T Consensus        10 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv~e~~~   89 (293)
T cd07843          10 LNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMVMEYVE   89 (293)
T ss_pred             hhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEEehhcC
Confidence            567999999999999975 578899999875421    23456789999999999999999998877  89999999997


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC--
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP--  488 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~--  488 (640)
                       ++|.+++.....    .+++.....++.|++.||+|||+   .+++|+||||+||++++++.+||+|||+++.....  
T Consensus        90 -~~L~~~~~~~~~----~l~~~~~~~i~~qi~~aL~~LH~---~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~  161 (293)
T cd07843          90 -HDLKSLMETMKQ----PFLQSEVKCLMLQLLSGVAHLHD---NWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLK  161 (293)
T ss_pred             -cCHHHHHHhccC----CCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHHHEEECCCCcEEEeecCceeeccCCcc
Confidence             599998875431    58899999999999999999995   45999999999999999999999999998866432  


Q ss_pred             ----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHH-HHHHhhcc-ccccc---
Q 006559          489 ----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVK-WVQMMGQD-ESAWE---  558 (640)
Q Consensus       489 ----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~-~~~~~~~~-~~~~~---  558 (640)
                          ...+..|+|||.+.+      ...++.++|||||||++|||++|+.||...... ... ........ ...+.   
T Consensus       162 ~~~~~~~~~~~~aPE~~~~------~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (293)
T cd07843         162 PYTQLVVTLWYRAPELLLG------AKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFS  235 (293)
T ss_pred             ccccccccccccCchhhcC------CccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhh
Confidence                234667999996532      223568999999999999999999999743211 100 00000000 00000   


Q ss_pred             -----------ccchhhccChHHHH--HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          559 -----------VFDFELIMDKEMEE--EMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       559 -----------~~d~~~~~~~~~~~--~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                                 ....... ......  ....+.+++..||+.+|++|||+.|++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~  289 (293)
T cd07843         236 ELPGAKKKTFTKYPYNQL-RKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALK  289 (293)
T ss_pred             ccchhcccccccccchhh-hccccccCCChHHHHHHHHHhccCccccCCHHHHhc
Confidence                       0000000 000111  1345677888899999999999999874

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=1.5e-32  Score=285.22  Aligned_cols=248  Identities=18%  Similarity=0.175  Sum_probs=178.3

Q ss_pred             cccccCcceEEEEEeCCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          340 LLGKGCVGATYKVVLDGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      .+|.|+++.||+++. ++..||||++...    ...+.+..|+++++.++|+||+++++++...+..+++|||+++|+|.
T Consensus         9 ~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l~   87 (314)
T cd08216           9 CFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCE   87 (314)
T ss_pred             hhcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCHH
Confidence            344555555555544 6889999998654    23356888999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--------
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--------  487 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--------  487 (640)
                      +++.....   ..+++.....++.|++.||+|||+   .+|+||||||+||+++.++.+|++|||.+.....        
T Consensus        88 ~~l~~~~~---~~~~~~~~~~~~~~l~~~L~~LH~---~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~  161 (314)
T cd08216          88 DLLKTHFP---EGLPELAIAFILKDVLNALDYIHS---KGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVV  161 (314)
T ss_pred             HHHHHhcc---cCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCcceEEEecCCceEEecCccceeecccccccccc
Confidence            99975432   247788889999999999999994   4599999999999999999999999998764421        


Q ss_pred             -----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcc-c-------
Q 006559          488 -----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQD-E-------  554 (640)
Q Consensus       488 -----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~-~-------  554 (640)
                           ....+..|+|||++...     ...++.++|||||||++|||++|+.||........ ..+..... .       
T Consensus       162 ~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~~  235 (314)
T cd08216         162 HDFPKSSVKNLPWLSPEVLQQN-----LQGYNEKSDIYSVGITACELANGHVPFKDMPATQM-LLEKVRGTVPCLLDKST  235 (314)
T ss_pred             ccccccccccccccCHHHhcCC-----CCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHhccCccccccCc
Confidence                 12235679999976321     13467899999999999999999999975322111 11110000 0       


Q ss_pred             ------cccc----ccchhhcc---ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          555 ------SAWE----VFDFELIM---DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       555 ------~~~~----~~d~~~~~---~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                            ....    ..+.....   .........++.+++.+||+.+|++|||+.++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~  294 (314)
T cd08216         236 YPLYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLN  294 (314)
T ss_pred             hhhhcCCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhc
Confidence                  0000    00000000   0001122345777888999999999999999975

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.5e-33  Score=278.56  Aligned_cols=239  Identities=19%  Similarity=0.207  Sum_probs=178.6

Q ss_pred             ccccccCcceEEEEEe-CCCcEEEEEEecccc--ch---HHHHHHHH-HHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKGCVGATYKVVL-DGGDVVVVKRIRERK--KK---REVDEWLR-VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~--~~---~~~~~e~~-~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      +.||+|+||.||+|.. .+++.||||.+....  ..   ..+..|.. .....+|+||+++++++...+..|+||||+++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            3589999999999986 457899999986531  11   22233333 34456899999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--Cc
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--PF  489 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--~~  489 (640)
                      |+|.+++....     ++++..+..++.|++.||.|||+   .+++||||+|+||++++++.+||+|||+++....  ..
T Consensus        82 ~~L~~~l~~~~-----~~~~~~~~~i~~qi~~aL~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~  153 (260)
T cd05611          82 GDCASLIKTLG-----GLPEDWAKQYIAEVVLGVEDLHQ---RGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENKKF  153 (260)
T ss_pred             CCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCcEEEeecccceeccccccC
Confidence            99999997543     47888899999999999999995   4599999999999999999999999999876432  23


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChH
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKE  569 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  569 (640)
                      .++..|++||.+.       ...++.++||||||+++|||+||+.||......  ...........     +.....   
T Consensus       154 ~~~~~y~~pe~~~-------~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~-----~~~~~~---  216 (260)
T cd05611         154 VGTPDYLAPETIL-------GVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPD--AVFDNILSRRI-----NWPEEV---  216 (260)
T ss_pred             CCCcCccChhhhc-------CCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHhccc-----CCCCcc---
Confidence            4577899999642       334678999999999999999999999753321  11111111000     000000   


Q ss_pred             HHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 006559          570 MEEEMRALLQVALLCLAPLPKDRPNMSIVHRMI  602 (640)
Q Consensus       570 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L  602 (640)
                      .......+.+++.+||+.+|++||++.++.+.|
T Consensus       217 ~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l  249 (260)
T cd05611         217 KEFCSPEAVDLINRLLCMDPAKRLGANGYQEIK  249 (260)
T ss_pred             cccCCHHHHHHHHHHccCCHHHccCCCcHHHHH
Confidence            012234577888889999999999876665544

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=6.9e-33  Score=284.48  Aligned_cols=227  Identities=20%  Similarity=0.258  Sum_probs=179.7

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+++.. +++.||+|.+...     ...+.+..|++++++++||||+++++++...+..++||||+++
T Consensus         6 ~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~   85 (290)
T cd05580           6 IKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVMEYVPG   85 (290)
T ss_pred             EEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEEecCCC
Confidence            467999999999999964 5889999998653     1234577899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---  488 (640)
                      |+|.+++....     .+++..+..++.|++.||.|||+   .+|+||||+|+||+++.++.+||+|||+++.....   
T Consensus        86 ~~L~~~~~~~~-----~l~~~~~~~~~~qil~~l~~lH~---~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~  157 (290)
T cd05580          86 GELFSHLRKSG-----RFPEPVARFYAAQVVLALEYLHS---LDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRTYT  157 (290)
T ss_pred             CCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEECCCCCEEEeeCCCccccCCCCCC
Confidence            99999997543     57888999999999999999994   56999999999999999999999999998876432   


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..++..|+|||..       .....+.++||||||+++|||+||+.||...... ..+ +....         .....+.
T Consensus       158 ~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-~~~-~~~~~---------~~~~~~~  219 (290)
T cd05580         158 LCGTPEYLAPEII-------LSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPI-QIY-EKILE---------GKVRFPS  219 (290)
T ss_pred             CCCCccccChhhh-------cCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHH-HHH-HHHhc---------CCccCCc
Confidence            2357789999964       3345678899999999999999999999754311 111 11111         0111111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCC
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRP  593 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RP  593 (640)
                      ..   ...+.+++.+||+.+|++||
T Consensus       220 ~~---~~~l~~li~~~l~~~p~~R~  241 (290)
T cd05580         220 FF---SPDAKDLIRNLLQVDLTKRL  241 (290)
T ss_pred             cC---CHHHHHHHHHHccCCHHHcc
Confidence            11   23456677889999999999

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=9.9e-33  Score=281.32  Aligned_cols=233  Identities=18%  Similarity=0.228  Sum_probs=178.2

Q ss_pred             ccccCcceEEEEEe-CCCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          341 LGKGCVGATYKVVL-DGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       341 iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ||+|+||+||++.. .+|..+|+|.+....     ..+.+..|++++++++||||+++.+++...+..|+||||+++++|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            69999999999985 468899999986431     233456789999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----Cc
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----PF  489 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----~~  489 (640)
                      .+++.....   ..+++..+..++.|++.||.|||.   .+++||||+|+||++++++.+||+|||++.....     ..
T Consensus        81 ~~~l~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~---~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~  154 (277)
T cd05577          81 KYHIYNVGE---PGFPEARAIFYAAQIICGLEHLHQ---RRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGR  154 (277)
T ss_pred             HHHHHHcCc---CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEEccCcchhhhccCCccccc
Confidence            999875432   258899999999999999999994   5699999999999999999999999999876532     12


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHhhcccccccccchhhccCh
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..+..|+|||+.       ....++.++|||||||++|||++|+.||...... ....+...        ..........
T Consensus       155 ~~~~~y~~PE~~-------~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~--------~~~~~~~~~~  219 (277)
T cd05577         155 AGTPGYMAPEVL-------QGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRR--------TLEMAVEYPD  219 (277)
T ss_pred             cCCCCcCCHHHh-------cCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHHhc--------cccccccCCc
Confidence            346689999964       3344678999999999999999999999753321 11101000        0000000111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSI  597 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~  597 (640)
                      .   ....+.+++.+||+.+|++||+.++
T Consensus       220 ~---~~~~~~~li~~~l~~~p~~R~~~~~  245 (277)
T cd05577         220 K---FSPEAKDLCEALLQKDPEKRLGCRG  245 (277)
T ss_pred             c---CCHHHHHHHHHHccCChhHccCCCc
Confidence            1   1234667788899999999995544

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=1.1e-32  Score=283.31  Aligned_cols=235  Identities=20%  Similarity=0.311  Sum_probs=183.3

Q ss_pred             ccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          339 ELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      .+||+|+||.||++.. .++..||||++...  .....+..|+.++++++|+||+++++++...+..++||||+++++|.
T Consensus        26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~  105 (292)
T cd06657          26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALT  105 (292)
T ss_pred             HHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcHH
Confidence            5699999999999986 46889999988644  23445778999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC------c
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP------F  489 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~------~  489 (640)
                      +++...      .+++.....++.|++.||+|||+   .+++|+||+|+||++++++.++|+|||++......      .
T Consensus       106 ~~~~~~------~~~~~~~~~~~~ql~~~l~~lH~---~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~  176 (292)
T cd06657         106 DIVTHT------RMNEEQIAAVCLAVLKALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSL  176 (292)
T ss_pred             HHHhcC------CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEEcccccceeccccccccccc
Confidence            987542      47889999999999999999994   46999999999999999999999999987654321      2


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChH
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKE  569 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  569 (640)
                      .++..|+|||..       ....++.++|||||||++|||++|+.||.....  .+.+.......      ......   
T Consensus       177 ~~~~~y~~pE~~-------~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~--~~~~~~~~~~~------~~~~~~---  238 (292)
T cd06657         177 VGTPYWMAPELI-------SRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRDNL------PPKLKN---  238 (292)
T ss_pred             ccCccccCHHHh-------cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhhC------CcccCC---
Confidence            346789999954       334567899999999999999999999864321  11111111100      000000   


Q ss_pred             HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          570 MEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       570 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .......+.+++.+||+.+|.+||++.++++
T Consensus       239 ~~~~~~~l~~li~~~l~~~P~~R~~~~~ll~  269 (292)
T cd06657         239 LHKVSPSLKGFLDRLLVRDPAQRATAAELLK  269 (292)
T ss_pred             cccCCHHHHHHHHHHHhCCcccCcCHHHHhc
Confidence            0112234566778899999999999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=5.6e-33  Score=291.36  Aligned_cols=254  Identities=17%  Similarity=0.302  Sum_probs=185.2

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcC-----CeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGK-----DELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~-----~~~~lV~Ey  408 (640)
                      .+.||+|+||.||+|+. .+|+.||+|.+...   .....+.+|+.++++++|+||+++++++...     ...|+|+||
T Consensus        10 ~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~   89 (336)
T cd07849          10 LSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDVYIVQEL   89 (336)
T ss_pred             EEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceEEEEehh
Confidence            56899999999999985 56889999998643   2234567899999999999999999987643     358999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-  487 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-  487 (640)
                      +++ +|.+++...      .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++.... 
T Consensus        90 ~~~-~l~~~~~~~------~l~~~~~~~i~~ql~~aL~~LH~---~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~  159 (336)
T cd07849          90 MET-DLYKLIKTQ------HLSNDHIQYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPE  159 (336)
T ss_pred             ccc-CHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEECCCCCEEECcccceeecccc
Confidence            974 888877643      48899999999999999999995   5599999999999999999999999999876532 


Q ss_pred             --------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHH-HHhhcc--cc
Q 006559          488 --------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWV-QMMGQD--ES  555 (640)
Q Consensus       488 --------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~-~~~~~~--~~  555 (640)
                              ...++..|+|||.+.      ....++.++|||||||++|||+||+.||...+.. ..... ......  +.
T Consensus       160 ~~~~~~~~~~~~~~~y~aPE~~~------~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~  233 (336)
T cd07849         160 HDHTGFLTEYVATRWYRAPEIML------NSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQED  233 (336)
T ss_pred             ccccCCcCCcCcCCCccChHHhh------CCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHH
Confidence                    123467899999642      2245678999999999999999999999753221 11111 111110  00


Q ss_pred             cccccchh-------hcc--C----hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH--HHHhhc
Q 006559          556 AWEVFDFE-------LIM--D----KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM--IEDIRT  607 (640)
Q Consensus       556 ~~~~~d~~-------~~~--~----~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~--L~~i~~  607 (640)
                      ...+.+..       ...  .    ........++.+++.+||+.+|++||++.++++.  ++....
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~~~  300 (336)
T cd07849         234 LNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQYHD  300 (336)
T ss_pred             HHHhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcCccccccCC
Confidence            00000000       000  0    0011223467889999999999999999999875  655543

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=1.6e-32  Score=278.19  Aligned_cols=230  Identities=17%  Similarity=0.210  Sum_probs=174.0

Q ss_pred             ccccCcceEEEEEe-CCCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHHhhc
Q 006559          341 LGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLH  419 (640)
Q Consensus       341 iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~~l~  419 (640)
                      ||+|+||.||+++. .++..+|+|.+....... .+.+...+ ..+||||+++++++...+..++||||+++|+|.+++.
T Consensus        24 lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~-~e~~~~~~-~~~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~  101 (267)
T PHA03390         24 LIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNA-IEPMVHQL-MKDNPNFIKLYYSVTTLKGHVLIMDYIKDGDLFDLLK  101 (267)
T ss_pred             ecCCCceEEEEEEEcCCCcEEEEEEEehhhcch-hhHHHHHH-hhcCCCEEEEEEEEecCCeeEEEEEcCCCCcHHHHHH
Confidence            69999999999985 467889999886542211 11111111 1279999999999999999999999999999999997


Q ss_pred             cCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC-CeEEccCCcccccCCC--cccccccc
Q 006559          420 GSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG-NACISDIGVHQLFHTP--FFINDAYN  496 (640)
Q Consensus       420 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~-~~kl~DfGl~~~~~~~--~~~~~~y~  496 (640)
                      ...     ++++..+..++.|+++||.|||+   .+++||||||+||+++.++ .++|+|||+++.....  ..++..|+
T Consensus       102 ~~~-----~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~y~  173 (267)
T PHA03390        102 KEG-----KLSEAEVKKIIRQLVEALNDLHK---HNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTPSCYDGTLDYF  173 (267)
T ss_pred             hcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEEeCCCCeEEEecCccceecCCCccCCCCCccc
Confidence            543     58999999999999999999994   5599999999999999988 9999999998765432  34577899


Q ss_pred             CCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcch---HHHHHHhhcccccccccchhhccChHHHHH
Q 006559          497 APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGI---VKWVQMMGQDESAWEVFDFELIMDKEMEEE  573 (640)
Q Consensus       497 aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  573 (640)
                      |||++       ....++.++|||||||++|||+||+.||.......   ..+......          .....   ...
T Consensus       174 aPE~~-------~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~----------~~~~~---~~~  233 (267)
T PHA03390        174 SPEKI-------KGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQQK----------KLPFI---KNV  233 (267)
T ss_pred             Chhhh-------cCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhhcc----------cCCcc---ccc
Confidence            99964       33456789999999999999999999997432221   222221110          00001   122


Q ss_pred             HHHHHHHHHHccCCCCCCCCC-HHHHHH
Q 006559          574 MRALLQVALLCLAPLPKDRPN-MSIVHR  600 (640)
Q Consensus       574 ~~~l~~l~~~Cl~~~P~~RPs-~~~v~~  600 (640)
                      ...+.+++.+||+.+|++||+ ++++++
T Consensus       234 ~~~~~~li~~~l~~~p~~R~~~~~~~l~  261 (267)
T PHA03390        234 SKNANDFVQSMLKYNINYRLTNYNEIIK  261 (267)
T ss_pred             CHHHHHHHHHHhccChhhCCchHHHHhc
Confidence            234666777899999999996 577763

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=2.6e-32  Score=282.74  Aligned_cols=242  Identities=22%  Similarity=0.360  Sum_probs=184.4

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..+.||+|+||.||+|+. .++..+|+|.+...     ...+++.+|+++++.++|+|++++.+++......++||||+.
T Consensus        19 ~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   98 (308)
T cd06634          19 DLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCL   98 (308)
T ss_pred             HHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEEccC
Confidence            456799999999999995 45788999988632     123456789999999999999999999999999999999997


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC--
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP--  488 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~--  488 (640)
                       |++.+++....    .++++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||++......  
T Consensus        99 -~~l~~~~~~~~----~~l~~~~~~~~~~~l~~~l~~LH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~  170 (308)
T cd06634          99 -GSASDLLEVHK----KPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANX  170 (308)
T ss_pred             -CCHHHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHhEEECCCCcEEECCcccceeecCccc
Confidence             68887775432    247889999999999999999994   45999999999999999999999999998765432  


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..++..|+|||.+..    .....++.++|||||||++|||++|+.|+......  ............      ...   
T Consensus       171 ~~~~~~y~aPE~~~~----~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~--~~~~~~~~~~~~------~~~---  235 (308)
T cd06634         171 FVGTPYWMAPEVILA----MDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM--SALYHIAQNESP------ALQ---  235 (308)
T ss_pred             ccCCccccCHHHHhh----cccCCCCcccchHHHHHHHHHHHcCCCCCccccHH--HHHHHHhhcCCC------CcC---
Confidence            345778999997531    12244678999999999999999999998643211  111111111000      000   


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMI  602 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L  602 (640)
                       .......+.+++.+||+.+|++||++.++++.-
T Consensus       236 -~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~  268 (308)
T cd06634         236 -SGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHR  268 (308)
T ss_pred             -cccccHHHHHHHHHHhhCCcccCCCHHHHhhCc
Confidence             012234466788889999999999999998653

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=1.5e-32  Score=280.75  Aligned_cols=251  Identities=21%  Similarity=0.341  Sum_probs=185.2

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|++|.||+|+.. +|..||||.++...   ....+.+|++++++++|+||+++++++...+..++||||+++ +
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~   83 (284)
T cd07836           5 LEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYMDK-D   83 (284)
T ss_pred             eeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecCCc-c
Confidence            467999999999999964 58889999987542   234567889999999999999999999999999999999985 8


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------  487 (640)
                      |.+++.....  ...+++..+..++.|++.||+|||+   .+++||||||+||++++++.+|++|||+++....      
T Consensus        84 l~~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~  158 (284)
T cd07836          84 LKKYMDTHGV--RGALDPNTVKSFTYQLLKGIAFCHE---NRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTFS  158 (284)
T ss_pred             HHHHHHhcCC--CCCcCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCccccc
Confidence            8888865431  2358999999999999999999995   4599999999999999999999999999876532      


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHH-HHHHhhc-cccccc------
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVK-WVQMMGQ-DESAWE------  558 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~-~~~~~~~-~~~~~~------  558 (640)
                      ....+..|++||++.+      ...++.++|||||||++|||+||+.||...... ... ..+.... ....+.      
T Consensus       159 ~~~~~~~y~~PE~~~~------~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (284)
T cd07836         159 NEVVTLWYRAPDVLLG------SRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLP  232 (284)
T ss_pred             cccccccccChHHhcC------CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCc
Confidence            2234678999997532      234567899999999999999999999753221 100 0000000 000000      


Q ss_pred             ccchhhcc------ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          559 VFDFELIM------DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       559 ~~d~~~~~------~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ........      ....+.....+.+++..|++.||.+||++.++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  280 (284)
T cd07836         233 EYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQ  280 (284)
T ss_pred             hhcccccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            00000000      0001122345778888999999999999999874

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-34  Score=284.49  Aligned_cols=235  Identities=22%  Similarity=0.269  Sum_probs=181.3

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      -++||+||||.||-++. .+|+.+|.|++.++     +.......|-.+|.+++.+.||.+-.+|.+++.+++|+..|.+
T Consensus       190 ~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClVLtlMNG  269 (591)
T KOG0986|consen  190 YRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLVLTLMNG  269 (591)
T ss_pred             eEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEEEEeecC
Confidence            46899999999999985 46889999988654     2334456788899999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|+-+|.....   .-++....+.+|.+|+.||++||   ..+||.|||||+|||||++|+++|+|+|||..+..    
T Consensus       270 GDLkfHiyn~g~---~gF~e~ra~FYAAEi~cGLehlH---~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~~~  343 (591)
T KOG0986|consen  270 GDLKFHIYNHGN---PGFDEQRARFYAAEIICGLEHLH---RRRIVYRDLKPENILLDDHGHVRISDLGLAVEIPEGKPI  343 (591)
T ss_pred             CceeEEeeccCC---CCCchHHHHHHHHHHHhhHHHHH---hcceeeccCChhheeeccCCCeEeeccceEEecCCCCcc
Confidence            999988876543   24899999999999999999999   55699999999999999999999999999987642    


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                       ..++|.+|||||++       ....|+...|.||+||++|||+.|+.||...... ++|-+.      -..+.......
T Consensus       344 ~~rvGT~GYMAPEvl-------~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeK-vk~eEv------drr~~~~~~ey  409 (591)
T KOG0986|consen  344 RGRVGTVGYMAPEVL-------QNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEK-VKREEV------DRRTLEDPEEY  409 (591)
T ss_pred             ccccCcccccCHHHH-------cCCcccCCccHHHHHhHHHHHHcccCchhhhhhh-hhHHHH------HHHHhcchhhc
Confidence             24679999999975       4455778899999999999999999999742211 111000      00111111112


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNM  595 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~  595 (640)
                      +...+++.+.+.+   .-++.||++|--.
T Consensus       410 ~~kFS~eakslc~---~LL~Kdp~~RLGc  435 (591)
T KOG0986|consen  410 SDKFSEEAKSLCE---GLLTKDPEKRLGC  435 (591)
T ss_pred             ccccCHHHHHHHH---HHHccCHHHhccC
Confidence            2233444454444   4788999999743

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.1e-33  Score=291.39  Aligned_cols=235  Identities=22%  Similarity=0.298  Sum_probs=186.1

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ...||+|.|+.|.+++. ..+..||+|.+.+..    ..+.+.+|+++|+.++|||||+++.+......+|+||||+.+|
T Consensus        61 ~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV~eya~~g  140 (596)
T KOG0586|consen   61 IKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLVMEYASGG  140 (596)
T ss_pred             eeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEEEEeccCc
Confidence            56799999999999985 458899999998762    2344788999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      .+++++.....     ........++.|+..|++|||+.+   |||||||++||||+.++.+||+|||++.++..     
T Consensus       141 e~~~yl~~~gr-----~~e~~ar~~F~q~vsaveYcH~k~---ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~~~lq  212 (596)
T KOG0586|consen  141 ELFDYLVKHGR-----MKEKEARAKFRQIVSAVEYCHSKN---IVHRDLKAENILLDENMNIKIADFGFSTFFDYGLMLQ  212 (596)
T ss_pred             hhHHHHHhccc-----chhhhhhhhhHHHHHHHHHHhhcc---eeccccchhhcccccccceeeeccccceeeccccccc
Confidence            99999987642     334677788999999999999654   99999999999999999999999999988753     


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      .+++++.|.|||++.+..      ..++++|+||+||++|-|+.|..||++.......           .+++...+..+
T Consensus       213 t~cgsppyAaPEl~~g~~------y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~Lr-----------~rvl~gk~rIp  275 (596)
T KOG0586|consen  213 TFCGSPPYAAPELFNGKK------YDGPEVDIWSLGVVLYALVEGSLPFDGQNLKELR-----------PRVLRGKYRIP  275 (596)
T ss_pred             ccCCCCCccChHhhcCcc------cCCcceehhhhhhhheeeeecccccCCccccccc-----------chheeeeeccc
Confidence            567899999999875443      2357899999999999999999999864322111           11111111122


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..+..+.+   +++.+.+-.+|.+|++++++.+
T Consensus       276 ~~ms~dce---~lLrk~lvl~Pskr~~~dqim~  305 (596)
T KOG0586|consen  276 FYMSCDCE---DLLRKFLVLNPSKRGPCDQIMK  305 (596)
T ss_pred             ceeechhH---HHHHHhhccCccccCCHHHhhh
Confidence            22233333   3445577889999999998864

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=1.7e-33  Score=269.35  Aligned_cols=192  Identities=23%  Similarity=0.405  Sum_probs=161.4

Q ss_pred             hccccccCcceEEEEEeCC-----CcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEc-CCeEEEEEe
Q 006559          338 AELLGKGCVGATYKVVLDG-----GDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNG-KDELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-----~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~-~~~~~lV~E  407 (640)
                      ...||+|.||.||+|+-.+     ...+|+|+++..+    .....-+|+.+++.++|||||.|..++.. +...++++|
T Consensus        29 ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~v~l~fd  108 (438)
T KOG0666|consen   29 IGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKKVWLLFD  108 (438)
T ss_pred             cceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCceEEEEeh
Confidence            3569999999999996432     2368999998662    24566789999999999999999998877 678999999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC----CCeEEccCCccc
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL----GNACISDIGVHQ  483 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~----~~~kl~DfGl~~  483 (640)
                      |.+. +|.++++..+.+....++-.....|..||..|+.|||+..   |+||||||.|||+..+    |.+||+|||+++
T Consensus       109 YAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NW---vlHRDLKPaNIlvmgdgperG~VKIaDlGlaR  184 (438)
T KOG0666|consen  109 YAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNW---VLHRDLKPANILVMGDGPERGRVKIADLGLAR  184 (438)
T ss_pred             hhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhh---eeeccCCcceEEEeccCCccCeeEeecccHHH
Confidence            9987 8988887666544456888889999999999999999655   9999999999999877    999999999999


Q ss_pred             ccCCC---------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 006559          484 LFHTP---------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG  539 (640)
Q Consensus       484 ~~~~~---------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~  539 (640)
                      .+..+         .+.|.+|+|||++.++      ..||++.||||.||++.||+|-++-|...
T Consensus       185 ~~~~plkpl~s~d~VVVTiWYRAPELLLGa------~hYT~AiDvWAiGCIfaElLtl~PlF~g~  243 (438)
T KOG0666|consen  185 LFNNPLKPLASLDPVVVTIWYRAPELLLGA------RHYTKAIDVWAIGCIFAELLTLEPLFKGR  243 (438)
T ss_pred             HhhccccccccCCceEEEEEecChHHhccc------ccccchhhhHHHHHHHHHHHccCccccch
Confidence            87643         3458999999997544      56788999999999999999998887643

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=4.2e-32  Score=272.72  Aligned_cols=237  Identities=24%  Similarity=0.362  Sum_probs=188.1

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcC--CeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGK--DELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lV~Ey~~  410 (640)
                      .+.||+|++|.||+|... ++..|++|.+....    ..+.+.+|+..+++++|+||+++++.+...  ...++|+||++
T Consensus         5 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~   84 (260)
T cd06606           5 GELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEYVS   84 (260)
T ss_pred             eeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEEEecC
Confidence            467999999999999976 68899999987653    245678899999999999999999999988  89999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC--
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP--  488 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~--  488 (640)
                      +++|.+++....     .+++..+..++.|++.||+|||+   .+++|+||+|+||+++.++.++|+|||.+......  
T Consensus        85 ~~~L~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~lh~---~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~  156 (260)
T cd06606          85 GGSLSSLLKKFG-----KLPEPVIRKYTRQILEGLAYLHS---NGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIET  156 (260)
T ss_pred             CCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEcCCCCEEEcccccEEecccccc
Confidence            999999987543     58999999999999999999995   56999999999999999999999999998765432  


Q ss_pred             ------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccch
Q 006559          489 ------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       489 ------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                            ...+..|++||..       .....+.++||||||+++|||++|+.||.... .................    
T Consensus       157 ~~~~~~~~~~~~y~~pE~~-------~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-~~~~~~~~~~~~~~~~~----  224 (260)
T cd06606         157 GEGTGSVRGTPYWMAPEVI-------RGEEYGRAADIWSLGCTVIEMATGKPPWSELG-NPMAALYKIGSSGEPPE----  224 (260)
T ss_pred             cccccCCCCCccccCHhhh-------cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-chHHHHHhccccCCCcC----
Confidence                  2346789999964       33347789999999999999999999997544 11111111110000000    


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                         .+.   .....+.+++.+|++.+|++||++.+++.
T Consensus       225 ---~~~---~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~  256 (260)
T cd06606         225 ---IPE---HLSEEAKDFLRKCLRRDPKKRPTADELLQ  256 (260)
T ss_pred             ---CCc---ccCHHHHHHHHHhCcCChhhCCCHHHHhh
Confidence               111   11345777888999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-32  Score=279.39  Aligned_cols=249  Identities=21%  Similarity=0.346  Sum_probs=185.9

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcC--CeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGK--DELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lV~Ey~~  410 (640)
                      .+.||+|+||.||+|+.. ++..+|+|.+....    ..+.+..|++++++++|+|++++++++...  +..++||||++
T Consensus         4 ~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~   83 (287)
T cd07840           4 IAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFEYMD   83 (287)
T ss_pred             eEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEecccc
Confidence            457999999999999965 47889999997652    235677899999999999999999999987  89999999998


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC--
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP--  488 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~--  488 (640)
                      + +|.+++....    ..+++..+..++.|+++||+|||+   .+++|+||||+||++++++.+||+|||++......  
T Consensus        84 ~-~l~~~~~~~~----~~~~~~~~~~i~~~i~~al~~LH~---~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~  155 (287)
T cd07840          84 H-DLTGLLDSPE----VKFTESQIKCYMKQLLEGLQYLHS---NGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNS  155 (287)
T ss_pred             c-cHHHHHhccC----CCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCcHHHeEEcCCCCEEEccccceeeccCCCc
Confidence            5 8988886542    258899999999999999999995   45999999999999999999999999998766432  


Q ss_pred             -----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHhhcc--ccccc--
Q 006559          489 -----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQD--ESAWE--  558 (640)
Q Consensus       489 -----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~~~~--~~~~~--  558 (640)
                           ...+..|+|||.+.+      ...++.++||||||+++|||+||+.||...... ....+......  ...+.  
T Consensus       156 ~~~~~~~~~~~y~~PE~~~~------~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (287)
T cd07840         156 ADYTNRVITLWYRPPELLLG------ATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGV  229 (287)
T ss_pred             ccccccccccccCCceeeEc------cccCChHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchhhcccc
Confidence                 123667999996422      234678999999999999999999999753321 11111110000  00000  


Q ss_pred             -------ccchhhccCh----HHHH-HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          559 -------VFDFELIMDK----EMEE-EMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       559 -------~~d~~~~~~~----~~~~-~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                             ..........    .... +...+.+++.+||..+|++||++.++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  283 (287)
T cd07840         230 SKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQ  283 (287)
T ss_pred             ccchhhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence                   0000000000    0111 1456888999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=2.7e-32  Score=272.91  Aligned_cols=238  Identities=23%  Similarity=0.363  Sum_probs=188.6

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc--chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK--KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      .+.||+|++|.||++... ++..+++|++....  ..+.+.+|++.+++++|+||+++.+++......++++||+++++|
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L   84 (253)
T cd05122           5 LEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSGGSL   84 (253)
T ss_pred             eeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCCCCcH
Confidence            467999999999999975 68889999987664  556788999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-----c
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-----F  489 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-----~  489 (640)
                      .+++....    ..+++..+..++.|++.||.|||.   .+++||||+|+||++++++.++|+|||.+......     .
T Consensus        85 ~~~~~~~~----~~~~~~~~~~i~~~i~~~l~~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~  157 (253)
T cd05122          85 KDLLKSTN----QTLTESQIAYVCKELLKGLEYLHS---NGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTM  157 (253)
T ss_pred             HHHHhhcC----CCCCHHHHHHHHHHHHHHHHHhhc---CCEecCCCCHHHEEEccCCeEEEeeccccccccccccccce
Confidence            99987642    258999999999999999999994   56999999999999999999999999998765432     2


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChH
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKE  569 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  569 (640)
                      .++..|++||..       ....++.++||||||+++|||++|+.||......  ......... ....     ....  
T Consensus       158 ~~~~~~~~PE~~-------~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~-~~~~-----~~~~--  220 (253)
T cd05122         158 VGTPYWMAPEVI-------NGKPYDYKADIWSLGITAIELAEGKPPYSELPPM--KALFKIATN-GPPG-----LRNP--  220 (253)
T ss_pred             ecCCcccCHHHH-------cCCCCCccccHHHHHHHHHHHHhCCCCCCCCchH--HHHHHHHhc-CCCC-----cCcc--
Confidence            346789999964       2334678999999999999999999999753211  111111110 0000     0000  


Q ss_pred             HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          570 MEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       570 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       ......+.+++.+||+.||++|||+.++++
T Consensus       221 -~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~  250 (253)
T cd05122         221 -EKWSDEFKDFLKKCLQKNPEKRPTAEQLLK  250 (253)
T ss_pred             -cccCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence             011235677888899999999999999875

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=9e-33  Score=289.55  Aligned_cols=255  Identities=20%  Similarity=0.335  Sum_probs=185.5

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEc----CCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNG----KDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~----~~~~~lV~Ey  408 (640)
                      .+.||+|+||.||+|+. .++..||+|++...    ...+.+..|+.++++++||||+++++++..    ....++||||
T Consensus        10 ~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~   89 (334)
T cd07855          10 IENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVYVVMDL   89 (334)
T ss_pred             eeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEEEEEeh
Confidence            46799999999999985 46889999998754    223456678999999999999999998763    3468999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-  487 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-  487 (640)
                      +. |+|.+++....     .+++..+..++.|++.||+|||+   .+|+||||||+||++++++.+||+|||+++.... 
T Consensus        90 ~~-~~l~~~~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~  160 (334)
T cd07855          90 ME-SDLHHIIHSDQ-----PLTEEHIRYFLYQLLRGLKYIHS---ANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSS  160 (334)
T ss_pred             hh-hhHHHHhccCC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCcEEecccccceeeccc
Confidence            96 68999886543     48899999999999999999994   5599999999999999999999999999876532 


Q ss_pred             ---------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHh-hccc--
Q 006559          488 ---------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMM-GQDE--  554 (640)
Q Consensus       488 ---------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~-~~~~--  554 (640)
                               ...++..|+|||.+.      ....++.++|||||||++|||++|+.||...+.. ........ +...  
T Consensus       161 ~~~~~~~~~~~~~~~~y~~PE~~~------~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~  234 (334)
T cd07855         161 PTEHKYFMTEYVATRWYRAPELLL------SLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEE  234 (334)
T ss_pred             CcCCCcccccccccccccChHHhc------CCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhH
Confidence                     123467899999652      2234678999999999999999999999753321 11111111 1000  


Q ss_pred             --------ccccc---cchhhcc--ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhhc
Q 006559          555 --------SAWEV---FDFELIM--DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDIRT  607 (640)
Q Consensus       555 --------~~~~~---~d~~~~~--~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i~~  607 (640)
                              .....   .......  .........++.+++.+||+.+|++||++.+++.  .+++...
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~~~~~~~  302 (334)
T cd07855         235 VLNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQHPFLAQYHD  302 (334)
T ss_pred             hhhhhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhChhhhhccC
Confidence                    00000   0000000  0001122456788889999999999999998865  4444433

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=2e-32  Score=281.97  Aligned_cols=245  Identities=23%  Similarity=0.315  Sum_probs=181.0

Q ss_pred             hhccccccCcceEEEEEeCC-CcEEEEEEecccc---chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          337 SAELLGKGCVGATYKVVLDG-GDVVVVKRIRERK---KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~~---~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ..+.||+|+||.||+|+..+ ++.||||.++...   ...++..|+.++.+. .||||+++++++......|+||||++ 
T Consensus        19 ~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~-   97 (296)
T cd06618          19 NLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICMELMS-   97 (296)
T ss_pred             eeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEeeccC-
Confidence            35789999999999999765 8899999987542   234455566656555 49999999999999999999999985 


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---  488 (640)
                      +++.+++....    .++++..+..++.|+++||+|||+.  .+|+||||+|+||++++++.+||+|||++..+...   
T Consensus        98 ~~l~~l~~~~~----~~l~~~~~~~i~~~i~~~l~~lH~~--~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~~~  171 (296)
T cd06618          98 TCLDKLLKRIQ----GPIPEDILGKMTVAIVKALHYLKEK--HGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAK  171 (296)
T ss_pred             cCHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhh--CCEecCCCcHHHEEEcCCCCEEECccccchhccCCCcc
Confidence            47777765432    2588999999999999999999952  36999999999999999999999999998765321   


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                        ...+..|+|||.+.....   ...++.++||||||+++|||++|+.||...... .+..........      +....
T Consensus       172 ~~~~~~~~y~aPE~~~~~~~---~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-~~~~~~~~~~~~------~~~~~  241 (296)
T cd06618         172 TRSAGCAAYMAPERIDPPDP---NPKYDIRADVWSLGISLVELATGQFPYKNCKTE-FEVLTKILQEEP------PSLPP  241 (296)
T ss_pred             cCCCCCccccCHhhcCCCCC---ccccccchhHHHHHHHHHHHHhCCCCCCcchhH-HHHHHHHhcCCC------CCCCC
Confidence              224568999997532211   234678999999999999999999999642211 111111111100      00000


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                      .   .....++.+++.+||+.||++||++.++++.
T Consensus       242 ~---~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~  273 (296)
T cd06618         242 N---EGFSPDFCSFVDLCLTKDHRKRPKYRELLQH  273 (296)
T ss_pred             C---CCCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            0   0123356778889999999999999999754

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-32  Score=280.07  Aligned_cols=250  Identities=20%  Similarity=0.317  Sum_probs=184.9

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccccc---hHHHHHHHHHHhccC-CCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERKK---KREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~---~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|+.. ++..|+||++.....   .....+|+..+++++ |+||+++++++...+..++||||+ +|
T Consensus         4 ~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~   82 (283)
T cd07830           4 IKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM-EG   82 (283)
T ss_pred             heeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC-CC
Confidence            467999999999999975 478899999876522   223456788899999 999999999999999999999999 88


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      +|.+++....   ...+++..+..++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||+++....     
T Consensus        83 ~l~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~Lh~---~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~~~  156 (283)
T cd07830          83 NLYQLMKDRK---GKPFSESVIRSIIYQILQGLAHIHK---HGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPPYT  156 (283)
T ss_pred             CHHHHHHhcc---cccCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEEcCCCCEEEeecccceeccCCCCcC
Confidence            9999887643   1257899999999999999999995   4599999999999999999999999999876643     


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHH-------------HHHHhhcc
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVK-------------WVQMMGQD  553 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~-------------~~~~~~~~  553 (640)
                      ....+..|+|||++.      ....++.++||||||+++|||+||+.||...... ...             |.......
T Consensus       157 ~~~~~~~~~aPE~~~------~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (283)
T cd07830         157 DYVSTRWYRAPEILL------RSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLA  230 (283)
T ss_pred             CCCCcccccCceeee------cCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhh
Confidence            233467899999652      2344678999999999999999999998643211 111             11100000


Q ss_pred             cccccccchhhc--cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          554 ESAWEVFDFELI--MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       554 ~~~~~~~d~~~~--~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ......+.....  ..........++.+++.+||+.+|++||++.|++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  279 (283)
T cd07830         231 SKLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQ  279 (283)
T ss_pred             ccccccccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhh
Confidence            000000000000  00001111356788899999999999999999865

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=1.9e-32  Score=281.75  Aligned_cols=249  Identities=20%  Similarity=0.321  Sum_probs=180.8

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|+.. +++.||+|.+....    ..+.+.+|++++++++||||+++++++...+..|+||||++ +
T Consensus         7 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~   85 (294)
T PLN00009          7 VEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLD-L   85 (294)
T ss_pred             EEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEeccc-c
Confidence            467999999999999965 68899999886432    23457789999999999999999999999999999999996 5


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC-CCCeEEccCCcccccCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ-LGNACISDIGVHQLFHT----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~-~~~~kl~DfGl~~~~~~----  487 (640)
                      +|.+++....   ...+++.....++.|++.||+|||+   .+++||||+|+||+++. ++.+||+|||+++....    
T Consensus        86 ~l~~~~~~~~---~~~~~~~~~~~~~~qi~~aL~~LH~---~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~~~  159 (294)
T PLN00009         86 DLKKHMDSSP---DFAKNPRLIKTYLYQILRGIAYCHS---HRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRT  159 (294)
T ss_pred             cHHHHHHhCC---CCCcCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCcceEEEECCCCEEEEcccccccccCCCccc
Confidence            8888775432   1235778888999999999999994   45999999999999985 56799999999876432    


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHh---hc-ccccccc--
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMM---GQ-DESAWEV--  559 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~---~~-~~~~~~~--  559 (640)
                        ....+..|+|||++.+      ...++.++|||||||++|||+||+.||...... ....+..   .. .+..+..  
T Consensus       160 ~~~~~~~~~y~~PE~~~~------~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  232 (294)
T PLN00009        160 FTHEVVTLWYRAPEILLG------SRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEI-DELFKIFRILGTPNEETWPGVT  232 (294)
T ss_pred             cccCceeecccCHHHHhC------CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCChhhccccc
Confidence              1233678999996522      234678999999999999999999999743211 1111111   00 0001100  


Q ss_pred             --cchhhc----cCh----HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 --FDFELI----MDK----EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 --~d~~~~----~~~----~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                        .+....    ...    .......++.+++.+|++.+|++||++.++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~  283 (294)
T PLN00009        233 SLPDYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALE  283 (294)
T ss_pred             cchhhhhhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhc
Confidence              000000    000    00112234677888899999999999999875

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=100.00  E-value=5e-35  Score=274.30  Aligned_cols=246  Identities=21%  Similarity=0.299  Sum_probs=179.2

Q ss_pred             ccccccCcceEEEEEe-CCCcEEEEEEecccc---chHHHHHHHH-HHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          339 ELLGKGCVGATYKVVL-DGGDVVVVKRIRERK---KKREVDEWLR-VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~---~~~~~~~e~~-~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      ..||.|+||+|+|..+ +.|+..|||+++...   .++.+..|.. +++.-+.||||+++|.+..++..|+.||.|.- +
T Consensus        70 g~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd~-S  148 (361)
T KOG1006|consen   70 GEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMDI-S  148 (361)
T ss_pred             HHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHhh-h
Confidence            4599999999999875 568999999998653   3455666665 45555789999999999999999999999954 6


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-----
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-----  488 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-----  488 (640)
                      |..+.+.--.-....+++...-+|+.-...||.||-.  ..+|||||+||+|||+|..|.+||||||++-.+..+     
T Consensus       149 lDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~--~lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~SiAkT~  226 (361)
T KOG1006|consen  149 LDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKE--ELKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSIAKTV  226 (361)
T ss_pred             HHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHH--HhhhhhccCChhheEEecCCCEeeecccchHhHHHHHHhhh
Confidence            6544321100011247777778888889999999985  557999999999999999999999999998665432     


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc-cC
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI-MD  567 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~  567 (640)
                      ..+...|||||.+.     -....|+-+|||||+|++|+|+.||+.|+..=. +..+.+......       |+... .+
T Consensus       227 daGCrpYmAPERi~-----p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~-svfeql~~Vv~g-------dpp~l~~~  293 (361)
T KOG1006|consen  227 DAGCRPYMAPERID-----PSDKGYDIRSDVWSLGITLYEVATGNFPYRKWD-SVFEQLCQVVIG-------DPPILLFD  293 (361)
T ss_pred             ccCCccccChhccC-----CccCCcchhhhhhhhcceEeeeecCCCCcchHH-HHHHHHHHHHcC-------CCCeecCc
Confidence            34567899999763     233368899999999999999999999986411 122222222211       22221 12


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .+.-+....+..++..|+.+|-..||+..++.+
T Consensus       294 ~~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~  326 (361)
T KOG1006|consen  294 KECVHYSFSMVRFINTCLIKDRSDRPKYDDLKK  326 (361)
T ss_pred             ccccccCHHHHHHHHHHhhcccccCcchhhhhc
Confidence            221223345666777799999999999988764

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=1.9e-32  Score=281.70  Aligned_cols=244  Identities=14%  Similarity=0.141  Sum_probs=168.5

Q ss_pred             hhccccccCcceEEEEEeCCC----cEEEEEEeccccch--H-----------HHHHHHHHHhccCCCcccceeEEEEcC
Q 006559          337 SAELLGKGCVGATYKVVLDGG----DVVVVKRIRERKKK--R-----------EVDEWLRVIGGLRHSNIVSIRAYCNGK  399 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~----~~vavK~l~~~~~~--~-----------~~~~e~~~l~~l~H~niv~l~~~~~~~  399 (640)
                      ..++||+|+||.||+|...++    ..+|+|........  .           ....+...+..++|+||+++++++...
T Consensus        16 i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~   95 (294)
T PHA02882         16 IDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGCGSFK   95 (294)
T ss_pred             EeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEeeeEe
Confidence            356899999999999997554    45566653322110  0           111223456677999999999876544


Q ss_pred             C----eEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeE
Q 006559          400 D----ELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNAC  475 (640)
Q Consensus       400 ~----~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~k  475 (640)
                      .    ..++++|++.. ++.+.+....     ..++..+..++.|+++||+|||+   .+|+||||||+|||++.++.++
T Consensus        96 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~lH~---~~iiHrDiKp~Nill~~~~~~~  166 (294)
T PHA02882         96 RCRMYYRFILLEKLVE-NTKEIFKRIK-----CKNKKLIKNIMKDMLTTLEYIHE---HGISHGDIKPENIMVDGNNRGY  166 (294)
T ss_pred             cCCceEEEEEEehhcc-CHHHHHHhhc-----cCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCcEE
Confidence            3    45788888754 6666665332     35677888999999999999994   5699999999999999999999


Q ss_pred             EccCCcccccCC-------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc
Q 006559          476 ISDIGVHQLFHT-------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG  542 (640)
Q Consensus       476 l~DfGl~~~~~~-------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~  542 (640)
                      |+|||+++.+..             ...+|..|+|||+.       ....++.++|||||||++|||+||+.||......
T Consensus       167 l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~-------~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~  239 (294)
T PHA02882        167 IIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAH-------NGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHN  239 (294)
T ss_pred             EEEcCCceeeccCCcccccccccccccCCCccccCHHHh-------CCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccc
Confidence            999999876521             12467889999964       3456788999999999999999999999754211


Q ss_pred             hHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 006559          543 IVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMI  602 (640)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L  602 (640)
                      .. .+..... +....+......    .......+.+++..|++.+|++||++.++.+.+
T Consensus       240 ~~-~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~  293 (294)
T PHA02882        240 GN-LIHAAKC-DFIKRLHEGKIK----IKNANKFIYDFIECVTKLSYEEKPDYDALIKIF  293 (294)
T ss_pred             hH-HHHHhHH-HHHHHhhhhhhc----cCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence            10 0100000 000011111111    112234567777789999999999999998876

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=2.3e-32  Score=286.81  Aligned_cols=254  Identities=20%  Similarity=0.329  Sum_probs=184.2

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccc----cchHHHHHHHHHHhcc-CCCcccceeEEEEcC--CeEEEEEec
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRER----KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGK--DELFLVYDY  408 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~--~~~~lV~Ey  408 (640)
                      ..+.||+|+||.||+|... ++..+|||++...    .....+..|+.+++++ +||||++++++|...  ...|+||||
T Consensus        11 ~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~lv~e~   90 (337)
T cd07852          11 ILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIYLVFEY   90 (337)
T ss_pred             HhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEEEEecc
Confidence            4578999999999999965 5788999988542    2234566789999999 999999999998654  368999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-  487 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-  487 (640)
                      ++ ++|..++...      .++|..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++.... 
T Consensus        91 ~~-~~L~~~~~~~------~~~~~~~~~i~~qi~~~L~~LH~---~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~  160 (337)
T cd07852          91 ME-TDLHAVIRAN------ILEDVHKRYIMYQLLKALKYIHS---GNVIHRDLKPSNILLNSDCRVKLADFGLARSLSEL  160 (337)
T ss_pred             cc-cCHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCcEEEeeccchhccccc
Confidence            97 5999888643      47888999999999999999994   5699999999999999999999999999875432 


Q ss_pred             ----------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHH-HHhhccc-
Q 006559          488 ----------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWV-QMMGQDE-  554 (640)
Q Consensus       488 ----------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~-~~~~~~~-  554 (640)
                                .+.++..|+|||++.      ....++.++|||||||++|||+||+.||...... ..... ....... 
T Consensus       161 ~~~~~~~~~~~~~~~~~y~aPE~~~------~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~  234 (337)
T cd07852         161 EENPENPVLTDYVATRWYRAPEILL------GSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSA  234 (337)
T ss_pred             cccccCcchhcccccccccCceeee------ccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCH
Confidence                      123467899999642      2244668899999999999999999998642211 11100 0000000 


Q ss_pred             ---------ccccccc----hhhc-cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH--HHHhh
Q 006559          555 ---------SAWEVFD----FELI-MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM--IEDIR  606 (640)
Q Consensus       555 ---------~~~~~~d----~~~~-~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~--L~~i~  606 (640)
                               ....+.+    .... ......+...++.+++.+||+.+|++|||+.++++.  ++++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~~~~~~~~  302 (337)
T cd07852         235 EDIESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEHPYVAQFH  302 (337)
T ss_pred             HHHHHHHhhhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhChhhhhhc
Confidence                     0000000    0000 000011123467888999999999999999999863  54543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=100.00  E-value=2.8e-32  Score=279.91  Aligned_cols=231  Identities=20%  Similarity=0.287  Sum_probs=177.6

Q ss_pred             hccccccCcceEEEEEe----CCCcEEEEEEeccc------cchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEE
Q 006559          338 AELLGKGCVGATYKVVL----DGGDVVVVKRIRER------KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~----~~~~~vavK~l~~~------~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~  406 (640)
                      .+.||+|+||.||+++.    .+|..||+|.++..      ...+.+..|++++.++ +|+||+++++++......++||
T Consensus         5 ~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~   84 (290)
T cd05613           5 LKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLHLIL   84 (290)
T ss_pred             eeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeEEEEE
Confidence            46799999999999985    36788999998753      1235577899999999 5899999999999889999999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||+++++|.+++....     ++++.....++.|+++||+|||+   .+++||||+|+|||++.++.+||+|||+++...
T Consensus        85 e~~~~~~L~~~l~~~~-----~l~~~~~~~~~~qi~~al~~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~  156 (290)
T cd05613          85 DYINGGELFTHLSQRE-----RFKEQEVQIYSGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVLTDFGLSKEFH  156 (290)
T ss_pred             ecCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeEECCCCCEEEeeCccceecc
Confidence            9999999999997543     47888888899999999999994   569999999999999999999999999987654


Q ss_pred             C-------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc--chHHHHHHhhcccccc
Q 006559          487 T-------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL--GIVKWVQMMGQDESAW  557 (640)
Q Consensus       487 ~-------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~--~~~~~~~~~~~~~~~~  557 (640)
                      .       ...++..|+|||....     ....++.++|||||||++|||+||+.||.....  ....+.+......   
T Consensus       157 ~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~---  228 (290)
T cd05613         157 EDEVERAYSFCGTIEYMAPDIVRG-----GDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSE---  228 (290)
T ss_pred             cccccccccccCCcccCChhhccC-----CCCCCCccccHHHHHHHHHHHhcCCCCCCcCCccccHHHHHHHhhccC---
Confidence            3       1235678999996532     122456789999999999999999999863211  1122222111110   


Q ss_pred             cccchhhccChHHHHHHHHHHHHHHHccCCCCCCCC
Q 006559          558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRP  593 (640)
Q Consensus       558 ~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RP  593 (640)
                          +.  .+.   .....+.+++.+||+.+|++||
T Consensus       229 ----~~--~~~---~~~~~~~~ll~~~l~~~p~~R~  255 (290)
T cd05613         229 ----PP--YPQ---EMSALAKDIIQRLLMKDPKKRL  255 (290)
T ss_pred             ----CC--CCc---cCCHHHHHHHHHHhcCCHHHhc
Confidence                00  111   1123456778889999999998

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=3.1e-32  Score=282.29  Aligned_cols=249  Identities=25%  Similarity=0.363  Sum_probs=182.1

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccccc----hHHHHHHHHHHhccCCCcccceeEEEEcC--CeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERKK----KREVDEWLRVIGGLRHSNIVSIRAYCNGK--DELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~----~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lV~Ey~~  410 (640)
                      .+.||+|+||.||+|.. .+|+.||+|.++....    ...+.+|++++++++|+||+++++++...  +..++||||+.
T Consensus        12 ~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~   91 (309)
T cd07845          12 LNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFLVMEYCE   91 (309)
T ss_pred             eeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEEEEecCC
Confidence            56799999999999996 4588999999864421    23456789999999999999999998764  56899999997


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC--
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP--  488 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~--  488 (640)
                       ++|.+++....    ..+++..+..++.|++.||+|||+   .+++||||||+||++++++.+||+|||+++.....  
T Consensus        92 -~~l~~~l~~~~----~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~  163 (309)
T cd07845          92 -QDLASLLDNMP----TPFSESQVKCLMLQLLRGLQYLHE---NFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAK  163 (309)
T ss_pred             -CCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEECccceeeecCCccC
Confidence             48888886532    258999999999999999999995   45999999999999999999999999998876432  


Q ss_pred             ----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHH-hhcc-ccccccc-
Q 006559          489 ----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQM-MGQD-ESAWEVF-  560 (640)
Q Consensus       489 ----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~-~~~~-~~~~~~~-  560 (640)
                          ...+..|+|||++.+      ...++.++||||+||++|||++|+.||...... ...-+.. .... ...+..+ 
T Consensus       164 ~~~~~~~~~~y~aPE~~~~------~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
T cd07845         164 PMTPKVVTLWYRAPELLLG------CTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFS  237 (309)
T ss_pred             CCCcccccccccChhhhcC------CCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChhhchhhh
Confidence                123567999997532      234678999999999999999999999743211 1111111 1100 0000000 


Q ss_pred             --------chhhccChH----HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          561 --------DFELIMDKE----MEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       561 --------d~~~~~~~~----~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                              .........    ......++.+++..|++.||++|||+.++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~  289 (309)
T cd07845         238 DLPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALE  289 (309)
T ss_pred             cccccccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence                    000000000    0112345677888999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-34  Score=317.89  Aligned_cols=237  Identities=27%  Similarity=0.402  Sum_probs=182.3

Q ss_pred             hccccccCcceEEEEE-eCCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVV-LDGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ...||.|.||.||-|. ..+|...|||.++-.    +.-+...+|+.++..++|||+|+++|+=...+..+|.||||++|
T Consensus      1240 g~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEyC~~G 1319 (1509)
T KOG4645|consen 1240 GNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEYCEGG 1319 (1509)
T ss_pred             ccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHHHhccC
Confidence            4579999999999998 677899999987643    33456789999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.+.+...+     ..+..-...+..|++.|+.|||   +.+||||||||.||+|+.+|.+|++|||.|......    
T Consensus      1320 sLa~ll~~gr-----i~dE~vt~vyt~qll~gla~LH---~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~ 1391 (1509)
T KOG4645|consen 1320 SLASLLEHGR-----IEDEMVTRVYTKQLLEGLAYLH---EHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTM 1391 (1509)
T ss_pred             cHHHHHHhcc-----hhhhhHHHHHHHHHHHHHHHHH---hcCceecCCCccceeeecCCcEEeecccceeEecCchhcC
Confidence            9999997554     2455556668899999999999   456999999999999999999999999998876432    


Q ss_pred             ------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccch
Q 006559          489 ------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       489 ------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                            ..+|+.|||||++.+..    ......+.||||+|||++||+||+.||.+-+.   +|.-+..-..    ...|
T Consensus      1392 ~~el~~~~GT~~YMAPEvit~t~----~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dn---e~aIMy~V~~----gh~P 1460 (1509)
T KOG4645|consen 1392 PGELQSMMGTPMYMAPEVITGTK----GKGHGGAADIWSLGCVVLEMATGKRPWAELDN---EWAIMYHVAA----GHKP 1460 (1509)
T ss_pred             CHHHHhhcCCchhcCchhhcccc----cCCCCcchhhhcccceEEEeecCCCchhhccc---hhHHHhHHhc----cCCC
Confidence                  35799999999986532    23344679999999999999999999974322   2322211000    0001


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIV  598 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v  598 (640)
                      +  .+..+..+-+   +++-.|++.||++|.++.|+
T Consensus      1461 q--~P~~ls~~g~---dFle~Cl~~dP~~Rw~~~ql 1491 (1509)
T KOG4645|consen 1461 Q--IPERLSSEGR---DFLEHCLEQDPKMRWTASQL 1491 (1509)
T ss_pred             C--CchhhhHhHH---HHHHHHHhcCchhhhHHHHH
Confidence            1  1122334334   44556999999999876643

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=5.7e-32  Score=280.79  Aligned_cols=247  Identities=21%  Similarity=0.364  Sum_probs=185.6

Q ss_pred             ChHHHHHHhhccccccCcceEEEEEe-CCCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeE
Q 006559          329 NVGDLLKSSAELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDEL  402 (640)
Q Consensus       329 ~~~~~~~~~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~  402 (640)
                      ++++... ..+.||+|+||.||+|+. .++..|++|.+....     ..+.+.+|++++++++|||++++.+++.+.+..
T Consensus        18 ~~~~~~~-~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   96 (313)
T cd06633          18 DPEEIFV-GLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTA   96 (313)
T ss_pred             CHHHHhh-cceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEE
Confidence            3344432 345699999999999985 467889999986431     124567889999999999999999999999999


Q ss_pred             EEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcc
Q 006559          403 FLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVH  482 (640)
Q Consensus       403 ~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~  482 (640)
                      |+||||++ |++.+++....    .++++..+..++.|++.||.|||+   .+|+||||+|+||+++.++.+||+|||++
T Consensus        97 ~lv~e~~~-~~l~~~l~~~~----~~l~~~~~~~~~~qi~~al~~LH~---~gi~H~dl~p~nili~~~~~~kL~dfg~~  168 (313)
T cd06633          97 WLVMEYCL-GSASDLLEVHK----KPLQEVEIAAITHGALQGLAYLHS---HNMIHRDIKAGNILLTEPGQVKLADFGSA  168 (313)
T ss_pred             EEEEecCC-CCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCChhhEEECCCCCEEEeecCCC
Confidence            99999996 57877776432    258899999999999999999994   45999999999999999999999999998


Q ss_pred             cccCC--CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccccc
Q 006559          483 QLFHT--PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVF  560 (640)
Q Consensus       483 ~~~~~--~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  560 (640)
                      .....  ...++..|+|||++...    ....++.++|||||||++|||++|+.|+.....  ...+.........    
T Consensus       169 ~~~~~~~~~~~~~~y~aPE~~~~~----~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~--~~~~~~~~~~~~~----  238 (313)
T cd06633         169 SKSSPANSFVGTPYWMAPEVILAM----DEGQYDGKVDVWSLGITCIELAERKPPLFNMNA--MSALYHIAQNDSP----  238 (313)
T ss_pred             cccCCCCCccccccccChhhcccc----CCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHhcCCC----
Confidence            65432  23457789999975321    234567899999999999999999999865321  1111111111100    


Q ss_pred             chhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          561 DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       561 d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                        .. ...   .....+.+++.+||+.+|.+||++.+++.
T Consensus       239 --~~-~~~---~~~~~l~~li~~~l~~~P~~Rp~~~~~l~  272 (313)
T cd06633         239 --TL-QSN---EWTDSFRGFVDYCLQKIPQERPASAELLR  272 (313)
T ss_pred             --CC-Ccc---ccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence              00 001   11234667788899999999999999874

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=3e-32  Score=281.23  Aligned_cols=250  Identities=22%  Similarity=0.365  Sum_probs=182.1

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCC----------e
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKD----------E  401 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~----------~  401 (640)
                      ..+.||+|+||.||+|... +++.||+|.++...    ....+..|++++++++||||+++++++....          .
T Consensus        11 ~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~   90 (302)
T cd07864          11 IIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDFKKDKGA   90 (302)
T ss_pred             eeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhccccCCc
Confidence            3568999999999999975 57889999986432    2345677899999999999999999987654          7


Q ss_pred             EEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCc
Q 006559          402 LFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV  481 (640)
Q Consensus       402 ~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl  481 (640)
                      .++|+||+++ ++...+....    ..+++..+..++.|++.||+|||+   .+|+||||||+||++++++.+||+|||+
T Consensus        91 ~~lv~e~~~~-~l~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH~---~~i~H~dl~p~nili~~~~~~kl~dfg~  162 (302)
T cd07864          91 FYLVFEYMDH-DLMGLLESGL----VHFSEDHIKSFMKQLLEGLNYCHK---KNFLHRDIKCSNILLNNKGQIKLADFGL  162 (302)
T ss_pred             EEEEEcccCc-cHHHHHhcCC----CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCcEEeCcccc
Confidence            9999999986 7777765432    258899999999999999999994   5699999999999999999999999999


Q ss_pred             ccccCCC-------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHHHHHHh-hc
Q 006559          482 HQLFHTP-------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVKWVQMM-GQ  552 (640)
Q Consensus       482 ~~~~~~~-------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~~~~~~-~~  552 (640)
                      +......       ...+..|+|||.+.      ....++.++|||||||++|||++|+.||...+. .....+... ..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~y~~PE~~~------~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~  236 (302)
T cd07864         163 ARLYNSEESRPYTNKVITLWYRPPELLL------GEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLCGS  236 (302)
T ss_pred             cccccCCcccccccceeccCccChHHhc------CCCCCCchhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCC
Confidence            8765421       12356799999642      223457889999999999999999999974321 111111111 11


Q ss_pred             c-ccccc-c--------cchhhcc----ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          553 D-ESAWE-V--------FDFELIM----DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       553 ~-~~~~~-~--------~d~~~~~----~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      . ...+. +        .+.....    ..........+.+++..||+.+|++||++.+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  298 (302)
T cd07864         237 PCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEALN  298 (302)
T ss_pred             CChhhcccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            0 00000 0        0000000    0001112346778888899999999999998874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=2.6e-32  Score=286.39  Aligned_cols=256  Identities=18%  Similarity=0.315  Sum_probs=186.6

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcC-----CeEEEEEe
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGK-----DELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~-----~~~~lV~E  407 (640)
                      .+.||+|+||.||+++. .++..||||.+...    .....+.+|+.+++.++|+||+++++++...     ...|+|||
T Consensus        10 ~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~lv~e   89 (337)
T cd07858          10 IKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDVYIVYE   89 (337)
T ss_pred             EEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcEEEEEe
Confidence            45799999999999985 46889999998653    2234566789999999999999999988654     35899999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      |+. ++|.+++....     ++++.....++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++....
T Consensus        90 ~~~-~~L~~~~~~~~-----~l~~~~~~~i~~qi~~aL~~LH~---~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~  160 (337)
T cd07858          90 LMD-TDLHQIIRSSQ-----TLSDDHCQYFLYQLLRGLKYIHS---ANVLHRDLKPSNLLLNANCDLKICDFGLARTTSE  160 (337)
T ss_pred             CCC-CCHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCEEECcCccccccCC
Confidence            996 68988886542     58899999999999999999994   4599999999999999999999999999876533


Q ss_pred             C------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHH-HHHHhhcc-cccc-
Q 006559          488 P------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVK-WVQMMGQD-ESAW-  557 (640)
Q Consensus       488 ~------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~-~~~~~~~~-~~~~-  557 (640)
                      .      ..++..|+|||.+..      ...++.++|||||||++|||++|+.||...+.. ... ........ ...+ 
T Consensus       161 ~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  234 (337)
T cd07858         161 KGDFMTEYVVTRWYRAPELLLN------CSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLG  234 (337)
T ss_pred             CcccccccccccCccChHHHhc------CCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhh
Confidence            2      345678999996532      234678999999999999999999999643211 000 01110000 0000 


Q ss_pred             cccchh-------------hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH--HHHhhcc
Q 006559          558 EVFDFE-------------LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM--IEDIRTK  608 (640)
Q Consensus       558 ~~~d~~-------------~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~--L~~i~~~  608 (640)
                      .+.+..             ............++.+++.+||+.+|++|||+.++++.  ++.++..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~~~  300 (337)
T cd07858         235 FIRNEKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLHDP  300 (337)
T ss_pred             hcCchhhhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhcCc
Confidence            000000             00000011234567788999999999999999999865  6665543

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=4.5e-32  Score=280.86  Aligned_cols=249  Identities=19%  Similarity=0.350  Sum_probs=179.0

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCC--------eEEE
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKD--------ELFL  404 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~--------~~~l  404 (640)
                      .+.||+|+||.||+|+.. +++.||||.+....    ....+.+|++++++++||||++++++|...+        ..++
T Consensus        17 ~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~l   96 (310)
T cd07865          17 LAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYKGSFYL   96 (310)
T ss_pred             EEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCCCceEEE
Confidence            467999999999999964 58899999886432    1234567899999999999999999987643        4599


Q ss_pred             EEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          405 VYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      ||||+++ +|.+++....    ..+++.....++.|++.||+|||+   .+++|+||||+||+++.++.+||+|||++..
T Consensus        97 v~e~~~~-~l~~~l~~~~----~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~  168 (310)
T cd07865          97 VFEFCEH-DLAGLLSNKN----VKFTLSEIKKVMKMLLNGLYYIHR---NKILHRDMKAANILITKDGILKLADFGLARA  168 (310)
T ss_pred             EEcCCCc-CHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEECCCCcEEECcCCCccc
Confidence            9999974 8888876432    247899999999999999999995   4599999999999999999999999999876


Q ss_pred             cCCC----------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHhhcc
Q 006559          485 FHTP----------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQD  553 (640)
Q Consensus       485 ~~~~----------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~~~~  553 (640)
                      ....          ...+..|+|||++.+      ...++.++||||||+++|||+||+.||...... ....+......
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~  242 (310)
T cd07865         169 FSLSKNSKPNRYTNRVVTLWYRPPELLLG------ERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGS  242 (310)
T ss_pred             ccCCcccCCCCccCcccCccccCcHHhcC------CcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCC
Confidence            5321          123567999996522      233567899999999999999999998753221 11111111100


Q ss_pred             --cccc------cccch-hhccC--hHHHH------HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          554 --ESAW------EVFDF-ELIMD--KEMEE------EMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       554 --~~~~------~~~d~-~~~~~--~~~~~------~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                        ...+      ...+. .....  .....      ....+.+++.+||..||++|||+.++++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~  306 (310)
T cd07865         243 ITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALN  306 (310)
T ss_pred             CChhhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhc
Confidence              0000      00000 00000  00000      1234668899999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=100.00  E-value=7.3e-33  Score=272.24  Aligned_cols=248  Identities=22%  Similarity=0.298  Sum_probs=191.2

Q ss_pred             hccccccCcceEEEEEeCC------CcEEEEEEeccccchH---HHHHHHHHHhccCCCcccceeEEEEcC-CeEEEEEe
Q 006559          338 AELLGKGCVGATYKVVLDG------GDVVVVKRIRERKKKR---EVDEWLRVIGGLRHSNIVSIRAYCNGK-DELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~------~~~vavK~l~~~~~~~---~~~~e~~~l~~l~H~niv~l~~~~~~~-~~~~lV~E  407 (640)
                      .-++-+|.||.||+|.|.+      .+.|.||.++....+-   .+..|...+..+.|||+.++.+++.+. +..+.+|.
T Consensus       289 ~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~ie~~~~P~V~y~  368 (563)
T KOG1024|consen  289 SCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVSIEDYATPFVLYP  368 (563)
T ss_pred             hhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEEeeccCcceEEEe
Confidence            3468899999999997653      3456778777654433   355666778888999999999998764 57889999


Q ss_pred             ccCCCCHHHhhccCCC---CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          408 YLPHGSLHSLLHGSRG---PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~---~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      |+..|+|+.+|...++   .....+.-.+...++.|++.|++|||.   .+|||.||.++|++||+...+||+|=.++|-
T Consensus       369 ~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~---~~ViHkDiAaRNCvIdd~LqVkltDsaLSRD  445 (563)
T KOG1024|consen  369 ATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHN---HGVIHKDIAARNCVIDDQLQVKLTDSALSRD  445 (563)
T ss_pred             ccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHh---cCcccchhhhhcceehhheeEEeccchhccc
Confidence            9999999999984332   234467778889999999999999994   5599999999999999999999999999886


Q ss_pred             cCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccc
Q 006559          485 FHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDES  555 (640)
Q Consensus       485 ~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~  555 (640)
                      +-+.        ......||+||       ......|+.++|||||||+||||+| |+.|+.+-+  -.+...++.+.. 
T Consensus       446 LFP~DYhcLGDnEnRPvkWMslE-------al~n~~yssasDvWsfGVllWELmtlg~~PyaeID--PfEm~~ylkdGy-  515 (563)
T KOG1024|consen  446 LFPGDYHCLGDNENRPVKWMSLE-------ALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEID--PFEMEHYLKDGY-  515 (563)
T ss_pred             cCcccccccCCCCCCcccccCHH-------HHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccC--HHHHHHHHhccc-
Confidence            5322        22355788888       4566788899999999999999999 999986422  222111211111 


Q ss_pred             cccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          556 AWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       556 ~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                             ++..   .-+++.++..+|..||+.+|++||++++++.-|.++...
T Consensus       516 -------RlaQ---P~NCPDeLf~vMacCWallpeeRPsf~Qlv~cLseF~~q  558 (563)
T KOG1024|consen  516 -------RLAQ---PFNCPDELFTVMACCWALLPEERPSFSQLVICLSEFHTQ  558 (563)
T ss_pred             -------eecC---CCCCcHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHH
Confidence                   1111   125667899999999999999999999999999998743

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-33  Score=262.55  Aligned_cols=242  Identities=23%  Similarity=0.305  Sum_probs=179.2

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccccchHH---HHHHHHHHhc-cCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERKKKRE---VDEWLRVIGG-LRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~~~~---~~~e~~~l~~-l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ...||.|..|.|++++.+ .|..+|||.+.....+++   +...++++.+ -+.|.||+.+|||......++.||.|.. 
T Consensus        97 l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelMs~-  175 (391)
T KOG0983|consen   97 LGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELMST-  175 (391)
T ss_pred             HHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHHHH-
Confidence            345999999999999965 488999999987644433   3334444333 3469999999999999999999999853 


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      .+..+++.-.+    ++++...-++...+.+||.||..  +.+|+|||+||+|||+|+.|.+|+||||++-.+...    
T Consensus       176 C~ekLlkrik~----piPE~ilGk~tva~v~AL~YLKe--KH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkAht  249 (391)
T KOG0983|consen  176 CAEKLLKRIKG----PIPERILGKMTVAIVKALYYLKE--KHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKAHT  249 (391)
T ss_pred             HHHHHHHHhcC----CchHHhhhhhHHHHHHHHHHHHH--hcceeecccCccceEEccCCCEEeecccccceeecccccc
Confidence            55556654432    57777788899999999999986  557999999999999999999999999998766432    


Q ss_pred             -ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          489 -FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       489 -~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                       ..+.+.|||||.+...    ...+|+.++|||||||.|+||+||+.||.....+....-+.+..+.       +.+...
T Consensus       250 rsAGC~~YMaPERidp~----~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~ltkvln~eP-------P~L~~~  318 (391)
T KOG0983|consen  250 RSAGCAAYMAPERIDPP----DKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFEVLTKVLNEEP-------PLLPGH  318 (391)
T ss_pred             cccCCccccCccccCCC----CCCccchhhhhhhhccchhhhhcccCCCCCCCccHHHHHHHHhcCC-------CCCCcc
Confidence             3456789999976322    2457889999999999999999999999864443322111111111       111111


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                         .....++.++...|+..|+.+||...++++
T Consensus       319 ---~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~  348 (391)
T KOG0983|consen  319 ---MGFSPDFQSFVKDCLTKDHRKRPKYNKLLE  348 (391)
T ss_pred             ---cCcCHHHHHHHHHHhhcCcccCcchHHHhc
Confidence               113445667777799999999998877653

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.6e-32  Score=301.82  Aligned_cols=252  Identities=16%  Similarity=0.236  Sum_probs=170.9

Q ss_pred             hccccccCcceEEEEEeCC--CcEEEEE------------------Eeccc-cchHHHHHHHHHHhccCCCcccceeEEE
Q 006559          338 AELLGKGCVGATYKVVLDG--GDVVVVK------------------RIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYC  396 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~--~~~vavK------------------~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~  396 (640)
                      .+.||+|+||+||++..+.  +..+++|                  .+... .....+.+|++++++++|||||++++++
T Consensus       153 i~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~  232 (501)
T PHA03210        153 IDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENILKIEEIL  232 (501)
T ss_pred             EeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCcCcEeEEE
Confidence            4679999999999987543  2222222                  11111 1234577899999999999999999999


Q ss_pred             EcCCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEE
Q 006559          397 NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACI  476 (640)
Q Consensus       397 ~~~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl  476 (640)
                      ...+..|+|+||+. ++|.+++..................++.|++.||+|||+   .+||||||||+|||++.++.+||
T Consensus       233 ~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~---~gIiHrDLKP~NILl~~~~~vkL  308 (501)
T PHA03210        233 RSEANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHD---KKLIHRDIKLENIFLNCDGKIVL  308 (501)
T ss_pred             EECCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEE
Confidence            99999999999985 577777654321111122345667899999999999995   45999999999999999999999


Q ss_pred             ccCCcccccCC-------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCC-CCCCCcch-HHHH
Q 006559          477 SDIGVHQLFHT-------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGI-VKWV  547 (640)
Q Consensus       477 ~DfGl~~~~~~-------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p-~~~~~~~~-~~~~  547 (640)
                      +|||+++.+..       ...++..|+|||++       ....++.++|||||||++|||++|+.+ +....... ....
T Consensus       309 ~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~~  381 (501)
T PHA03210        309 GDFGTAMPFEKEREAFDYGWVGTVATNSPEIL-------AGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLL  381 (501)
T ss_pred             EeCCCceecCcccccccccccCCcCCCCchhh-------cCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHHH
Confidence            99999986542       23468899999965       334577899999999999999998754 43322111 1111


Q ss_pred             HHhhccc----c-------cccccch-hhcc-ChHHHH------HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          548 QMMGQDE----S-------AWEVFDF-ELIM-DKEMEE------EMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       548 ~~~~~~~----~-------~~~~~d~-~~~~-~~~~~~------~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      +......    .       .+..++. .+.. ......      ...++.+++.+|++.||++|||+.|++.
T Consensus       382 ~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~  453 (501)
T PHA03210        382 KIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAELLA  453 (501)
T ss_pred             HHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccCcCHHHHhh
Confidence            1111000    0       0000000 0000 000000      1124566778899999999999999975

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=7e-32  Score=285.00  Aligned_cols=243  Identities=19%  Similarity=0.298  Sum_probs=180.3

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcC------CeEEEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGK------DELFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------~~~~lV~  406 (640)
                      .+.||+|+||.||+|+. .++..||+|.+...    .....+.+|+.++++++||||+++++++...      ...|+||
T Consensus        21 ~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~  100 (353)
T cd07850          21 LKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEFQDVYLVM  100 (353)
T ss_pred             EEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccccCcEEEEE
Confidence            46799999999999985 46889999998643    2234566789999999999999999998643      3579999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||++ ++|.+.+..       .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++...
T Consensus       101 e~~~-~~l~~~~~~-------~l~~~~~~~~~~ql~~aL~~LH~---~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~  169 (353)
T cd07850         101 ELMD-ANLCQVIQM-------DLDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  169 (353)
T ss_pred             eccC-CCHHHHHhh-------cCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEccCccceeCC
Confidence            9996 588887753       26788889999999999999995   459999999999999999999999999998764


Q ss_pred             CC-----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhh---ccc-ccc
Q 006559          487 TP-----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMG---QDE-SAW  557 (640)
Q Consensus       487 ~~-----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~---~~~-~~~  557 (640)
                      ..     ..++..|+|||++       ....++.++|||||||++|||++|+.||...+. ...|.....   ... ...
T Consensus       170 ~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~  241 (353)
T cd07850         170 TSFMMTPYVVTRYYRAPEVI-------LGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDH-IDQWNKIIEQLGTPSDEFM  241 (353)
T ss_pred             CCCCCCCCcccccccCHHHH-------hCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHhcCCCCHHHH
Confidence            32     2346789999964       334577899999999999999999999974321 111211110   000 000


Q ss_pred             -----------------------cccchhhccChH----HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          558 -----------------------EVFDFELIMDKE----MEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       558 -----------------------~~~d~~~~~~~~----~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                                             ..+.. ......    .......+.+++.+|++.||++|||+.|++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~  310 (353)
T cd07850         242 SRLQPTVRNYVENRPKYAGYSFEELFPD-VLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQ  310 (353)
T ss_pred             HHhhhhhhHHhhcCCCCCCcchhhhCcc-cccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhc
Confidence                                   00000 000000    0122345678899999999999999999974

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-31  Score=269.09  Aligned_cols=235  Identities=23%  Similarity=0.370  Sum_probs=185.8

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|++|.||+++.. ++..|++|.+....    ....+.+|++++++++|+|++++++++......++||||++++
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~   84 (254)
T cd06627           5 GDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEYAENG   84 (254)
T ss_pred             eeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEecCCCC
Confidence            467999999999999864 57889999987653    2356788999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.+++....     .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||++......    
T Consensus        85 ~L~~~~~~~~-----~l~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~  156 (254)
T cd06627          85 SLRQIIKKFG-----PFPESLVAVYVYQVLQGLAYLHE---QGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDD  156 (254)
T ss_pred             cHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCHHHEEECCCCCEEEeccccceecCCCcccc
Confidence            9999987542     58899999999999999999994   56999999999999999999999999998876432    


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                        ...+..|+|||..       .....+.++||||+|+++|||++|+.|+.........|. .. ... .     ..  .
T Consensus       157 ~~~~~~~~y~~pe~~-------~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~~~~~-~~-~~~-~-----~~--~  219 (254)
T cd06627         157 ASVVGTPYWMAPEVI-------EMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMAALFR-IV-QDD-H-----PP--L  219 (254)
T ss_pred             cccccchhhcCHhhh-------cCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHHHHHHH-Hh-ccC-C-----CC--C
Confidence              2346789999964       223367889999999999999999999875332111111 11 100 0     00  0


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..   .....+.+++.+||..+|++||++.+++.
T Consensus       220 ~~---~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  250 (254)
T cd06627         220 PE---GISPELKDFLMQCFQKDPNLRPTAKQLLK  250 (254)
T ss_pred             CC---CCCHHHHHHHHHHHhCChhhCcCHHHHhc
Confidence            11   11234667788899999999999999874

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=3.7e-32  Score=278.71  Aligned_cols=244  Identities=19%  Similarity=0.233  Sum_probs=185.9

Q ss_pred             hccccccCcceEEEEEe----CCCcEEEEEEeccc------cchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEE
Q 006559          338 AELLGKGCVGATYKVVL----DGGDVVVVKRIRER------KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~----~~~~~vavK~l~~~------~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~  406 (640)
                      .+.||+|+||.||+++.    .++..||||.++..      ...+.+..|++++.++ +||||+++.+.+......++||
T Consensus         5 ~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   84 (288)
T cd05583           5 LRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLHLIL   84 (288)
T ss_pred             EEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEEEEE
Confidence            46799999999999884    35678999998743      1234567889999999 5999999999999999999999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||+++|+|.+++....     .+++.....++.|+++||+|||+   .+++||||||+||+++.++.++|+|||+++...
T Consensus        85 e~~~~~~L~~~~~~~~-----~~~~~~~~~~~~ql~~~l~~lH~---~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  156 (288)
T cd05583          85 DYVNGGELFTHLYQRE-----HFTESEVRVYIAEIVLALDHLHQ---LGIIYRDIKLENILLDSEGHVVLTDFGLSKEFL  156 (288)
T ss_pred             ecCCCCcHHHHHhhcC-----CcCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEEEECccccccc
Confidence            9999999999987532     57888999999999999999994   569999999999999999999999999987643


Q ss_pred             CC-------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc--hHHHHHHhhcccccc
Q 006559          487 TP-------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG--IVKWVQMMGQDESAW  557 (640)
Q Consensus       487 ~~-------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~--~~~~~~~~~~~~~~~  557 (640)
                      ..       ..++..|+|||.....     ....+.++||||||+++|||+||+.||......  ...+.+.....    
T Consensus       157 ~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~----  227 (288)
T cd05583         157 AEEEERAYSFCGTIEYMAPEVIRGG-----SGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKS----  227 (288)
T ss_pred             cccccccccccCCccccCHHHhcCC-----CCCCcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHHHHHcc----
Confidence            21       2346789999964221     123567899999999999999999998632211  11111111110    


Q ss_pred             cccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       558 ~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                           ......   .....+.+++.+||+.+|++|||+.+|.+.|+...
T Consensus       228 -----~~~~~~---~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~~~  268 (288)
T cd05583         228 -----KPPFPK---TMSAEARDFIQKLLEKDPKKRLGANGADEIKNHPF  268 (288)
T ss_pred             -----CCCCCc---ccCHHHHHHHHHHhcCCHhhccCcchHHHHhcCcc
Confidence                 000111   11234567788899999999999999988776643

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=100.00  E-value=9.6e-33  Score=291.32  Aligned_cols=259  Identities=24%  Similarity=0.290  Sum_probs=188.8

Q ss_pred             hccccccCcceEEEEE-eCCCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcC------CeEEEEEe
Q 006559          338 AELLGKGCVGATYKVV-LDGGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGK------DELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------~~~~lV~E  407 (640)
                      .+.||+|+||.||+|+ -..|..||||..+..   ...+....|++++++++|+|||++++.=.+.      ....+|||
T Consensus        18 ~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlvmE   97 (732)
T KOG4250|consen   18 DERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLVME   97 (732)
T ss_pred             hhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEEEe
Confidence            4679999999999999 567999999999874   3345566899999999999999999885543      36889999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC--CCC--CeEEccCCccc
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD--QLG--NACISDIGVHQ  483 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~--~~~--~~kl~DfGl~~  483 (640)
                      ||++|||+..+....  ...-|+....+.+..+++.||.|||   +.+||||||||.||++-  .+|  .-||+|||.|+
T Consensus        98 yC~gGsL~~~L~~PE--N~~GLpE~e~l~lL~d~~~al~~Lr---En~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Ar  172 (732)
T KOG4250|consen   98 YCSGGSLRKVLNSPE--NAYGLPESEFLDLLSDLVSALRHLR---ENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAAR  172 (732)
T ss_pred             ecCCCcHHHHhcCcc--cccCCCHHHHHHHHHHHHHHHHHHH---HcCceeccCCCCcEEEeecCCCceEEeeecccccc
Confidence            999999999998654  2345889999999999999999999   55699999999999984  444  46999999999


Q ss_pred             ccCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc----hHHHHHHhhccc
Q 006559          484 LFHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG----IVKWVQMMGQDE  554 (640)
Q Consensus       484 ~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~----~~~~~~~~~~~~  554 (640)
                      .+..     +.++|..|.+||+...      ...|+..+|.|||||++||.+||..||......    .+.|.....+..
T Consensus       173 el~d~s~~~S~vGT~~YLhPel~E~------q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~pk~~~~~~~~~~tkkp~  246 (732)
T KOG4250|consen  173 ELDDNSLFTSLVGTEEYLHPELYER------QKKYTATVDLWSFGVTLYECATGELPFIPFGGPKNNKEIMWHIITKKPS  246 (732)
T ss_pred             cCCCCCeeeeecCchhhcChHHHhh------ccCcCceeehhhhhhHHHHHhccCCCCCcCCCccccchhhhhhhccCCC
Confidence            8764     4578999999997422      467788899999999999999999999743222    133433322221


Q ss_pred             ccccccch----------hhccChH-HHHHHHHHHHHHHHccCCCCCCCC--CHHHHHHHHHHhhc
Q 006559          555 SAWEVFDF----------ELIMDKE-MEEEMRALLQVALLCLAPLPKDRP--NMSIVHRMIEDIRT  607 (640)
Q Consensus       555 ~~~~~~d~----------~~~~~~~-~~~~~~~l~~l~~~Cl~~~P~~RP--s~~~v~~~L~~i~~  607 (640)
                      ......+.          .+..+.. .+.....+......++..+|++|-  .+.+....+.+|..
T Consensus       247 ~v~i~~~~~eNgpv~~s~~lP~p~~Ls~~l~~~~~kwLa~~L~~~~~~~~~~~~~~~Fa~~~dIL~  312 (732)
T KOG4250|consen  247 GVAIGAQEEENGPVEWSSTLPQPNHLSRGLATRLTKWLASMLEWNPRKRGHEGFDRFFAEVDDILN  312 (732)
T ss_pred             ceeEeeecccCCceeeeccCCCcccccHHHHhhhhHHHHHHHhhhHHHhCCCCcchHHHHHHHHHh
Confidence            11110010          1111111 122233344445557777888888  66666665555543

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=1e-31  Score=274.81  Aligned_cols=249  Identities=20%  Similarity=0.276  Sum_probs=180.5

Q ss_pred             hccccccCcceEEEEEeCC-CcEEEEEEecccc----chHHHHHHHHHHh---ccCCCcccceeEEEEcCCe-----EEE
Q 006559          338 AELLGKGCVGATYKVVLDG-GDVVVVKRIRERK----KKREVDEWLRVIG---GLRHSNIVSIRAYCNGKDE-----LFL  404 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~~----~~~~~~~e~~~l~---~l~H~niv~l~~~~~~~~~-----~~l  404 (640)
                      .+.||+|+||.||+|+... +..||+|.++...    ....+..|+.+++   +++|+||+++.+++...+.     .++
T Consensus         4 ~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~l   83 (287)
T cd07838           4 LAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKLTL   83 (287)
T ss_pred             EEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCceeEE
Confidence            4679999999999999764 8899999997431    1234555665554   4579999999999988776     999


Q ss_pred             EEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          405 VYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      +|||++ ++|.+++.....   ..+++..+..++.|+++||+|||+   .+++|+||+|+||+++.++.+||+|||++..
T Consensus        84 ~~e~~~-~~l~~~l~~~~~---~~l~~~~~~~~~~~i~~al~~LH~---~~i~h~~l~~~nili~~~~~~~l~dfg~~~~  156 (287)
T cd07838          84 VFEHVD-QDLATYLSKCPK---PGLPPETIKDLMRQLLRGVDFLHS---HRIVHRDLKPQNILVTSDGQVKIADFGLARI  156 (287)
T ss_pred             Eehhcc-cCHHHHHHHccC---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCChhhEEEccCCCEEEeccCccee
Confidence            999997 489988865431   258899999999999999999994   5599999999999999999999999999877


Q ss_pred             cCCC-----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc--hHHHHHHhhcccc--
Q 006559          485 FHTP-----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG--IVKWVQMMGQDES--  555 (640)
Q Consensus       485 ~~~~-----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~--~~~~~~~~~~~~~--  555 (640)
                      ....     ...+..|+|||++       ....++.++|||||||++|||+||+.||......  ...+.+.......  
T Consensus       157 ~~~~~~~~~~~~~~~~~~PE~~-------~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (287)
T cd07838         157 YSFEMALTSVVVTLWYRAPEVL-------LQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIFDVIGLPSEEE  229 (287)
T ss_pred             ccCCcccccccccccccChHHh-------ccCCCCCcchhhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHcCCCChHh
Confidence            6432     2346679999965       3345678999999999999999999998743211  1111111110000  


Q ss_pred             -c------ccccchhhcc--ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          556 -A------WEVFDFELIM--DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       556 -~------~~~~d~~~~~--~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       .      ...+......  .....+....+.+++.+||+.||++||++.+++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         230 WPRNVSLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             cCCCcccchhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence             0      0000000000  0111223356778889999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.98  E-value=6.1e-32  Score=271.61  Aligned_cols=239  Identities=22%  Similarity=0.308  Sum_probs=187.4

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+++. .+++.+|+|.+...    ....++.+|++++++++|+||+++.+++......++||||++++
T Consensus         5 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~   84 (256)
T cd08530           5 LKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEYAPFG   84 (256)
T ss_pred             eeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehhcCCC
Confidence            46799999999999985 46788999998753    22345678899999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.+++..... ....+++..+..++.|++.||+|||+   .+++|+||+|+||++++++.+|++|||+++.....    
T Consensus        85 ~L~~~~~~~~~-~~~~~~~~~~~~~~~~l~~al~~lh~---~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~  160 (256)
T cd08530          85 DLSKAISKRKK-KRKLIPEQEIWRIFIQLLRGLQALHE---QKILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAKT  160 (256)
T ss_pred             CHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCcceEEEecCCcEEEeeccchhhhccCCccc
Confidence            99999865321 12358899999999999999999994   55999999999999999999999999998765432    


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..++..|++||.+       ....++.++|+||||+++|||++|+.||...+..  +........ ..          ..
T Consensus       161 ~~~~~~~~~Pe~~-------~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~--~~~~~~~~~-~~----------~~  220 (256)
T cd08530         161 QIGTPHYMAPEVW-------KGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQ--DLRYKVQRG-KY----------PP  220 (256)
T ss_pred             ccCCccccCHHHH-------CCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHhcC-CC----------CC
Confidence            2346789999964       3345677899999999999999999999754321  111111110 00          00


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .......++.+++.+|++.+|++||++.++++
T Consensus       221 ~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  252 (256)
T cd08530         221 IPPIYSQDLQNFIRSMLQVKPKLRPNCDKILA  252 (256)
T ss_pred             CchhhCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            01123445788888999999999999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.98  E-value=7.3e-32  Score=275.38  Aligned_cols=249  Identities=20%  Similarity=0.364  Sum_probs=186.4

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|++|.||+++.. +++.+++|.+....    ....+..|++++++++|+||+++++++...+..++||||+++ 
T Consensus         4 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~-   82 (283)
T cd05118           4 LGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFMDT-   82 (283)
T ss_pred             ceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEeccCC-
Confidence            356999999999999864 68889999987542    235677889999999999999999999999999999999975 


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.+++....    ..+++..+..++.|++.||.|||+   .+|+|+||||+||+++.++.+||+|||.+......    
T Consensus        83 ~l~~~l~~~~----~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~~  155 (283)
T cd05118          83 DLYKLIKDRQ----RGLPESLIKSYLYQLLQGLAFCHS---HGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPY  155 (283)
T ss_pred             CHHHHHHhhc----ccCCHHHHHHHHHHHHHHHHHHHH---CCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCcccc
Confidence            8888886542    258899999999999999999995   45999999999999999999999999998766432    


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHHHH-HHhhcc-cccccccch-
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVKWV-QMMGQD-ESAWEVFDF-  562 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~~~-~~~~~~-~~~~~~~d~-  562 (640)
                        ...+..|+|||.+.      ....++.++||||||+++|||+||+.||...+. +..... ...... ...+..... 
T Consensus       156 ~~~~~~~~~~~PE~~~------~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (283)
T cd05118         156 THYVVTRWYRAPELLL------GDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSL  229 (283)
T ss_pred             cCccCcccccCcHHHh------cCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhh
Confidence              23466799999752      223577899999999999999999999864332 111111 000000 000000000 


Q ss_pred             ------------hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          563 ------------ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       563 ------------~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                                  ........++...++.+++..||++||.+||++.+++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~  279 (283)
T cd05118         230 ARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALA  279 (283)
T ss_pred             hhhhhhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhh
Confidence                        00000111233456888999999999999999999875

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.98  E-value=1.7e-31  Score=268.35  Aligned_cols=239  Identities=21%  Similarity=0.341  Sum_probs=188.7

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||++... ++..+|+|++...    ...+++.+|++++++++|+|++++.+.+...+..++|+||++++
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~~~~~   84 (258)
T cd08215           5 IKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEYADGG   84 (258)
T ss_pred             EeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEecCCC
Confidence            467999999999999965 5788999998754    23456788999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.+++..... ....+++..+..++.+++.||.|||+   .+++|+||+|+||+++.++.++|+|||.+......    
T Consensus        85 ~L~~~l~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lh~---~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~  160 (258)
T cd08215          85 DLSQKIKKQKK-EGKPFPEEQILDWFVQLCLALKYLHS---RKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLA  160 (258)
T ss_pred             cHHHHHHHhhc-cCCCcCHHHHHHHHHHHHHHHHHHHh---CCEecccCChHHeEEcCCCcEEECCccceeecccCccee
Confidence            99999876431 12368999999999999999999995   46999999999999999999999999998765432    


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                        ..++..|+|||..       ....++.++||||+|+++|+|++|+.||...+  ..+......... ..     .+  
T Consensus       161 ~~~~~~~~y~~pe~~-------~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~--~~~~~~~~~~~~-~~-----~~--  223 (258)
T cd08215         161 KTVVGTPYYLSPELC-------QNKPYNYKSDIWSLGCVLYELCTLKHPFEGEN--LLELALKILKGQ-YP-----PI--  223 (258)
T ss_pred             cceeeeecccChhHh-------ccCCCCccccHHHHHHHHHHHHcCCCCCCCCc--HHHHHHHHhcCC-CC-----CC--
Confidence              2346679999964       33456789999999999999999999996543  222222211111 00     00  


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..   ....++.+++.+||..+|++||++.++++
T Consensus       224 ~~---~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~  254 (258)
T cd08215         224 PS---QYSSELRNLVSSLLQKDPEERPSIAQILQ  254 (258)
T ss_pred             CC---CCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence            01   12235677888899999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.98  E-value=1.7e-31  Score=278.89  Aligned_cols=248  Identities=20%  Similarity=0.296  Sum_probs=181.9

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEc-CCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNG-KDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~-~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+++. .++..||||++...    ...+.+..|++++++++||||+++.+++.. ....++|+||+ +
T Consensus        15 ~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~lv~e~~-~   93 (328)
T cd07856          15 LQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLEDIYFVTELL-G   93 (328)
T ss_pred             EEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCcEEEEeehh-c
Confidence            56899999999999985 47889999987643    234567789999999999999999999876 45789999998 5


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---  488 (640)
                      ++|.++++..      ++++.....++.|+++||+|||+   .+|+||||+|+||++++++.+||+|||+++.....   
T Consensus        94 ~~L~~~~~~~------~~~~~~~~~~~~ql~~aL~~LH~---~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~~~~~  164 (328)
T cd07856          94 TDLHRLLTSR------PLEKQFIQYFLYQILRGLKYVHS---AGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTG  164 (328)
T ss_pred             cCHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEeECCCCCEEeCccccccccCCCcCC
Confidence            6898888643      46778888899999999999994   55999999999999999999999999998765432   


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc--hHHHHHHhhccc-c-cccccch--
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG--IVKWVQMMGQDE-S-AWEVFDF--  562 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~--~~~~~~~~~~~~-~-~~~~~d~--  562 (640)
                      ...+..|+|||.+.      ....++.++|||||||++|||+||+.||......  ...+.+...... . ...+.+.  
T Consensus       165 ~~~~~~y~aPE~~~------~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (328)
T cd07856         165 YVSTRYYRAPEIML------TWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENT  238 (328)
T ss_pred             CcccccccCceeee------ccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhh
Confidence            33467899999642      2235678999999999999999999999643321  111111111100 0 0000000  


Q ss_pred             -------hh--ccC--hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          563 -------EL--IMD--KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       563 -------~~--~~~--~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                             ..  ..+  ........++.+++.+|++.+|++||++.+++..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~  288 (328)
T cd07856         239 LRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAH  288 (328)
T ss_pred             HHHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                   00  000  0011123567788899999999999999988643

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.98  E-value=9.9e-32  Score=282.55  Aligned_cols=253  Identities=18%  Similarity=0.281  Sum_probs=183.0

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcC------CeEEEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGK------DELFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------~~~~lV~  406 (640)
                      .+.||+|+||.||+|+. .+++.||||++...    .....+.+|++++++++||||+++++++...      ...++|+
T Consensus        20 ~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~   99 (342)
T cd07879          20 LKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQDFYLVM   99 (342)
T ss_pred             EEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCceEEEEe
Confidence            46799999999999985 46889999998643    1234577899999999999999999998654      3579999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||+.. +|..+...       .+++..+..++.|+++||+|||.   .+|+||||||+||+++.++.+||+|||+++...
T Consensus       100 e~~~~-~l~~~~~~-------~~~~~~~~~~~~qi~~aL~~LH~---~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~  168 (342)
T cd07879         100 PYMQT-DLQKIMGH-------PLSEDKVQYLVYQMLCGLKYIHS---AGIIHRDLKPGNLAVNEDCELKILDFGLARHAD  168 (342)
T ss_pred             ccccc-CHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEeeCCCCcCCC
Confidence            99974 77766531       47888999999999999999995   459999999999999999999999999987654


Q ss_pred             CC---ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHhhccc--cc----
Q 006559          487 TP---FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQDE--SA----  556 (640)
Q Consensus       487 ~~---~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~~~~~--~~----  556 (640)
                      ..   ...+..|+|||++..      ...++.++|||||||++|||++|+.||...... ...-........  ..    
T Consensus       169 ~~~~~~~~~~~y~aPE~~~~------~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (342)
T cd07879         169 AEMTGYVVTRWYRAPEVILN------WMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGPEFVQKL  242 (342)
T ss_pred             CCCCCceeeecccChhhhcC------ccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHh
Confidence            32   344678999996522      234678999999999999999999999754311 111000000000  00    


Q ss_pred             -----ccccch-hhccChH----HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhhc
Q 006559          557 -----WEVFDF-ELIMDKE----MEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDIRT  607 (640)
Q Consensus       557 -----~~~~d~-~~~~~~~----~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i~~  607 (640)
                           ....+. .......    ......++.+++.+||+.||++||++.+++.  .++.++.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~  305 (342)
T cd07879         243 EDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRD  305 (342)
T ss_pred             cccchHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhccc
Confidence                 000000 0000000    0112245678888999999999999999984  4666653

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.98  E-value=1.6e-31  Score=279.79  Aligned_cols=256  Identities=20%  Similarity=0.267  Sum_probs=181.9

Q ss_pred             hccccccCcceEEEEEeCC---CcEEEEEEecccc----chHHHHHHHHHHhcc-CCCcccceeEEEEcC----CeEEEE
Q 006559          338 AELLGKGCVGATYKVVLDG---GDVVVVKRIRERK----KKREVDEWLRVIGGL-RHSNIVSIRAYCNGK----DELFLV  405 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~---~~~vavK~l~~~~----~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~----~~~~lV  405 (640)
                      .+.||+|+||.||+++...   +..||+|++....    ..+.+..|+++++++ +||||+++++++...    ...|++
T Consensus         5 ~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~   84 (332)
T cd07857           5 IKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNELYLY   84 (332)
T ss_pred             EEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcEEEE
Confidence            4679999999999999643   6789999987531    234567788999988 599999999875432    457899


Q ss_pred             EeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccccc
Q 006559          406 YDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF  485 (640)
Q Consensus       406 ~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~  485 (640)
                      +||+. ++|.+++....     .+++..+..++.|++.||+|||+   .+|+||||||+||++++++.+||+|||+++..
T Consensus        85 ~e~~~-~~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~---~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~  155 (332)
T cd07857          85 EELME-ADLHQIIRSGQ-----PLTDAHFQSFIYQILCGLKYIHS---ANVLHRDLKPGNLLVNADCELKICDFGLARGF  155 (332)
T ss_pred             Eeccc-CCHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHeEEcCCCCEEeCcCCCceec
Confidence            99986 68999886433     58899999999999999999994   45999999999999999999999999998754


Q ss_pred             CC----------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHHH-HHHhhcc
Q 006559          486 HT----------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVKW-VQMMGQD  553 (640)
Q Consensus       486 ~~----------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~~-~~~~~~~  553 (640)
                      ..          ...++..|+|||+..      ....++.++|||||||++|||++|+.||..... ..... +...+..
T Consensus       156 ~~~~~~~~~~~~~~~g~~~y~aPE~~~------~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~  229 (332)
T cd07857         156 SENPGENAGFMTEYVATRWYRAPEIML------SFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTP  229 (332)
T ss_pred             ccccccccccccCcccCccccCcHHHh------CCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCC
Confidence            32          124577899999642      223567899999999999999999999874321 11111 1100000


Q ss_pred             -c-ccccccch-------------hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhhcc
Q 006559          554 -E-SAWEVFDF-------------ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDIRTK  608 (640)
Q Consensus       554 -~-~~~~~~d~-------------~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i~~~  608 (640)
                       . ....+.++             ..............+.+++.+|++.+|++|||+.+++.  .+++.+..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~~~~~~~~~~  301 (332)
T cd07857         230 DEETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALEHPYLAIWHDP  301 (332)
T ss_pred             CHHHHHhhhhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhhhhhcCc
Confidence             0 00000000             00000000011345778899999999999999999863  45544443

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.98  E-value=1.7e-31  Score=279.38  Aligned_cols=256  Identities=19%  Similarity=0.299  Sum_probs=190.0

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCC-----eEEEEEe
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKD-----ELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~-----~~~lV~E  407 (640)
                      .+.||+|+||.||+|+.. .+..||||++...    ...+.+.+|+.+++.++|+||+++.+++...+     ..|+|||
T Consensus         5 ~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~lv~e   84 (330)
T cd07834           5 LKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYIVTE   84 (330)
T ss_pred             eeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceEEEec
Confidence            467999999999999965 4889999998754    23456788999999999999999999988765     7899999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      |++ ++|.+++....     ++++..+..++.|++.||+|||+   .+|+||||||+|||++.++.++|+|||++.....
T Consensus        85 ~~~-~~l~~~l~~~~-----~l~~~~~~~i~~~l~~~l~~LH~---~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~  155 (330)
T cd07834          85 LME-TDLHKVIKSPQ-----PLTDDHIQYFLYQILRGLKYLHS---ANVIHRDLKPSNILVNSNCDLKICDFGLARGVDP  155 (330)
T ss_pred             chh-hhHHHHHhCCC-----CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEcccCceEeecc
Confidence            998 58988887543     58899999999999999999995   4599999999999999999999999999876543


Q ss_pred             C---------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHhhcc-c-c
Q 006559          488 P---------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQD-E-S  555 (640)
Q Consensus       488 ~---------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~~~~-~-~  555 (640)
                      .         ...+..|+|||++...      ..++.++||||||+++|||+||+.||...... ....+...... . .
T Consensus       156 ~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~  229 (330)
T cd07834         156 DEDEKGFLTEYVVTRWYRAPELLLSS------SRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEE  229 (330)
T ss_pred             cccccccccccccccCcCCceeeecc------cCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChh
Confidence            2         2346779999975321      25678999999999999999999999753321 11111110000 0 0


Q ss_pred             ccc---------ccch-hhccCh----HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhhcc
Q 006559          556 AWE---------VFDF-ELIMDK----EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDIRTK  608 (640)
Q Consensus       556 ~~~---------~~d~-~~~~~~----~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i~~~  608 (640)
                      .+.         .+.. ......    ........+.+++.+||+.+|++||++.+++.  .++++...
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~~  298 (330)
T cd07834         230 DLKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHDP  298 (330)
T ss_pred             HhhhccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhccc
Confidence            000         0000 000000    00112345778889999999999999999987  47776654

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.98  E-value=2.1e-31  Score=266.75  Aligned_cols=228  Identities=23%  Similarity=0.313  Sum_probs=181.3

Q ss_pred             ccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          341 LGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       341 iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ||+|+||.||++... +++.+|+|.+....     ....+..|+.++++++|+||+++++.+...+..++||||+++++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            699999999999965 48889999987542     234677889999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------C
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------P  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------~  488 (640)
                      .+++....     .+++.....++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++.....      .
T Consensus        81 ~~~l~~~~-----~l~~~~~~~~~~qi~~~l~~lh~---~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~  152 (250)
T cd05123          81 FSHLSKEG-----RFSEERARFYAAEIVLALEYLHS---LGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNT  152 (250)
T ss_pred             HHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcceEEEcCCCcEEEeecCcceecccCCCcccC
Confidence            99997543     47899999999999999999995   5699999999999999999999999999876533      2


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ...+..|++||..       .....+.++|+||||+++||+++|+.||...+.  ....+.....         ....+.
T Consensus       153 ~~~~~~~~~Pe~~-------~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~--~~~~~~~~~~---------~~~~~~  214 (250)
T cd05123         153 FCGTPEYLAPEVL-------LGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDR--KEIYEKILKD---------PLRFPE  214 (250)
T ss_pred             CcCCccccChHHh-------CCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHhcC---------CCCCCC
Confidence            3346789999964       334467889999999999999999999975432  1111111110         011111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSI  597 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~  597 (640)
                      ..   ..++.+++.+||..||++||++.+
T Consensus       215 ~~---~~~l~~~i~~~l~~~p~~R~~~~~  240 (250)
T cd05123         215 FL---SPEARDLISGLLQKDPTKRLGSGG  240 (250)
T ss_pred             CC---CHHHHHHHHHHhcCCHhhCCCccc
Confidence            11   234667888899999999999965

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=4.6e-31  Score=267.00  Aligned_cols=235  Identities=22%  Similarity=0.351  Sum_probs=178.1

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc-------cchHHHHHHHHHHhccCCCcccceeEEEEcC--CeEEEEEe
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER-------KKKREVDEWLRVIGGLRHSNIVSIRAYCNGK--DELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-------~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lV~E  407 (640)
                      .+.||+|+||.||+|.. .++..||+|.+...       ...+.+.+|++++++++|+||+++++++...  ...++|+|
T Consensus         7 ~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e   86 (264)
T cd06653           7 GKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLSIFVE   86 (264)
T ss_pred             eeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEEEEEEE
Confidence            56899999999999985 45889999987432       1224577899999999999999999998764  46889999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      |+++++|.+++....     .+++.....++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||+++....
T Consensus        87 ~~~~~~L~~~~~~~~-----~l~~~~~~~~~~~i~~al~~LH~---~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~  158 (264)
T cd06653          87 YMPGGSIKDQLKAYG-----ALTENVTRRYTRQILQGVSYLHS---NMIVHRDIKGANILRDSAGNVKLGDFGASKRIQT  158 (264)
T ss_pred             eCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCEEECcccccccccc
Confidence            999999999987542     47788899999999999999994   4599999999999999999999999999876432


Q ss_pred             ---------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccc
Q 006559          488 ---------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE  558 (640)
Q Consensus       488 ---------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  558 (640)
                               ...++..|+|||++       ....++.++|||||||++|||++|+.||.+.... ....+......    
T Consensus       159 ~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-~~~~~~~~~~~----  226 (264)
T cd06653         159 ICMSGTGIKSVTGTPYWMSPEVI-------SGEGYGRKADVWSVACTVVEMLTEKPPWAEYEAM-AAIFKIATQPT----  226 (264)
T ss_pred             ccccCccccccCCcccccCHhhh-------cCCCCCccccHHHHHHHHHHHHhCCCCCCccCHH-HHHHHHHcCCC----
Confidence                     12356789999964       3345678999999999999999999999743211 11111111100    


Q ss_pred             ccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       559 ~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                          ....+....   ..+.+++.+|+. +|.+||+..++..
T Consensus       227 ----~~~~p~~~~---~~~~~~i~~~l~-~~~~r~~~~~~~~  260 (264)
T cd06653         227 ----KPMLPDGVS---DACRDFLKQIFV-EEKRRPTAEFLLR  260 (264)
T ss_pred             ----CCCCCcccC---HHHHHHHHHHhc-CcccCccHHHHhc
Confidence                000111222   345566677998 5799999987754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.97  E-value=1.5e-31  Score=276.99  Aligned_cols=249  Identities=21%  Similarity=0.340  Sum_probs=178.4

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCC--------eEEE
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKD--------ELFL  404 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~--------~~~l  404 (640)
                      .+.||+|+||.||+|+.. +++.+|||++....    ....+.+|++++++++||||+++++++....        ..++
T Consensus        13 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~l   92 (311)
T cd07866          13 LGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRKRGSVYM   92 (311)
T ss_pred             EEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheecccccccccCceEEE
Confidence            567999999999999964 57889999886442    2235678899999999999999999875433        4799


Q ss_pred             EEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          405 VYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      ||||+.. ++...+....    ..+++..+..++.|+++||+|||+   .+|+||||||+||++++++.+||+|||+++.
T Consensus        93 v~~~~~~-~l~~~~~~~~----~~~~~~~~~~i~~~l~~al~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~  164 (311)
T cd07866          93 VTPYMDH-DLSGLLENPS----VKLTESQIKCYMLQLLEGINYLHE---NHILHRDIKAANILIDNQGILKIADFGLARP  164 (311)
T ss_pred             EEecCCc-CHHHHHhccc----cCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEECcCccchh
Confidence            9999975 6777766432    258899999999999999999995   4599999999999999999999999999876


Q ss_pred             cCCC-----------------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHH-
Q 006559          485 FHTP-----------------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVK-  545 (640)
Q Consensus       485 ~~~~-----------------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~-  545 (640)
                      ....                 ..++..|+|||++.      ....++.++|||||||++|||++|+.||..... ...+ 
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~------~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~  238 (311)
T cd07866         165 YDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLL------GERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHL  238 (311)
T ss_pred             ccCCCcccccCCcccccccccceeccCcCChHHhh------CCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence            5321                 12255699999642      223467899999999999999999999874321 1111 


Q ss_pred             HHHHhhcc-ccccc-------cc----chhhccC--hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          546 WVQMMGQD-ESAWE-------VF----DFELIMD--KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       546 ~~~~~~~~-~~~~~-------~~----d~~~~~~--~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ........ +..+.       ..    .......  .........+.+++.+|++.+|++|||+.+++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~  307 (311)
T cd07866         239 IFKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALE  307 (311)
T ss_pred             HHHHhCCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhc
Confidence            11111100 00000       00    0000000  001112246778899999999999999998864

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.97  E-value=1.5e-31  Score=272.48  Aligned_cols=233  Identities=20%  Similarity=0.289  Sum_probs=182.9

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccC-CCcccceeEEEEcCCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      .+.||+|+||.||+++.. ++..||+|.+...     ...+.+..|..++.+++ ||||+++++++...+..++||||++
T Consensus         6 ~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~   85 (280)
T cd05581           6 GKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVLEYAP   85 (280)
T ss_pred             eeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEEcCCC
Confidence            457999999999999964 6889999998653     22355677888999998 9999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc-
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF-  489 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~-  489 (640)
                      +++|.+++....     .+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++++|||++....... 
T Consensus        86 ~~~L~~~l~~~~-----~l~~~~~~~i~~ql~~~l~~Lh~---~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~  157 (280)
T cd05581          86 NGELLQYIRKYG-----SLDEKCTRFYAAEILLALEYLHS---KGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSS  157 (280)
T ss_pred             CCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHeEECCCCCEEecCCccccccCCccc
Confidence            999999997543     58999999999999999999994   459999999999999999999999999987653221 


Q ss_pred             -------------------------cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchH
Q 006559          490 -------------------------FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIV  544 (640)
Q Consensus       490 -------------------------~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~  544 (640)
                                               ..+..|+|||+.       .....+.++||||||++++|+++|+.||......  
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~-------~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--  228 (280)
T cd05581         158 PESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELL-------NEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEY--  228 (280)
T ss_pred             cccCCCCCccccccccccccccccccCCccccCHHHh-------CCCCCChhhhHHHHHHHHHHHHhCCCCCCCccHH--
Confidence                                     235679999964       3344678999999999999999999999754311  


Q ss_pred             HHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCH----HHHH
Q 006559          545 KWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNM----SIVH  599 (640)
Q Consensus       545 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~----~~v~  599 (640)
                      .-.+...         +.........   ...+.+++.+||+.+|++||++    .+++
T Consensus       229 ~~~~~~~---------~~~~~~~~~~---~~~~~~li~~~l~~~p~~R~~~~~~~~~ll  275 (280)
T cd05581         229 LTFQKIL---------KLEYSFPPNF---PPDAKDLIEKLLVLDPQDRLGVNEGYDELK  275 (280)
T ss_pred             HHHHHHH---------hcCCCCCCcc---CHHHHHHHHHHhcCCHhhCCCcccCHHHHh
Confidence            1011111         0011111111   3346778888999999999999    6654

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.97  E-value=2.4e-31  Score=279.68  Aligned_cols=253  Identities=19%  Similarity=0.298  Sum_probs=184.6

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCC------eEEEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKD------ELFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~------~~~lV~  406 (640)
                      .+.||+|+||.||++.. .++..||||++...    ...+.+..|++++++++||||+++++++....      ..++||
T Consensus        20 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~   99 (343)
T cd07880          20 LKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRFHDFYLVM   99 (343)
T ss_pred             EEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCccccccceEEEEE
Confidence            46799999999999984 56889999998643    12345778999999999999999999987543      468999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||+ +++|.+++...      .+++..+..++.|+++||+|||.   .+|+||||||+||+++.++.+||+|||++....
T Consensus       100 e~~-~~~l~~~~~~~------~l~~~~~~~i~~qi~~al~~LH~---~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~~  169 (343)
T cd07880         100 PFM-GTDLGKLMKHE------KLSEDRIQFLVYQMLKGLKYIHA---AGIIHRDLKPGNLAVNEDCELKILDFGLARQTD  169 (343)
T ss_pred             ecC-CCCHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeecccccccc
Confidence            999 67998887642      47899999999999999999994   569999999999999999999999999988654


Q ss_pred             CC---ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchh
Q 006559          487 TP---FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       487 ~~---~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                      ..   ...+..|+|||.+..      ...++.++|||||||++||+++|+.||...... ....+...........+...
T Consensus       170 ~~~~~~~~~~~y~aPE~~~~------~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~  242 (343)
T cd07880         170 SEMTGYVVTRWYRAPEVILN------WMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHL-DQLMEIMKVTGTPSKEFVQK  242 (343)
T ss_pred             cCccccccCCcccCHHHHhC------CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHhcCCCCHHHHHh
Confidence            32   344778999997521      134678899999999999999999999753211 11111000000000000000


Q ss_pred             h--------------ccChH----HHHHHHHHHHHHHHccCCCCCCCCCHHHHH--HHHHHhhc
Q 006559          564 L--------------IMDKE----MEEEMRALLQVALLCLAPLPKDRPNMSIVH--RMIEDIRT  607 (640)
Q Consensus       564 ~--------------~~~~~----~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~--~~L~~i~~  607 (640)
                      +              .....    ......++.+++.+|++.||++|||+.+++  ..++.+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~~~~~~~~~~  306 (343)
T cd07880         243 LQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALAHPYFEEFHD  306 (343)
T ss_pred             hcchhHHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhcCccHhhhcC
Confidence            0              00000    011233577889999999999999999987  45555543

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.97  E-value=1.3e-31  Score=281.66  Aligned_cols=247  Identities=20%  Similarity=0.265  Sum_probs=177.5

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcC--------------C
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGK--------------D  400 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--------------~  400 (640)
                      .+.||+|+||.||+|.. .++..||+|++...  ...+.+.+|++++++++||||+++++++...              .
T Consensus        10 ~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~   89 (342)
T cd07854          10 LRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGSLTELN   89 (342)
T ss_pred             EEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccccccccc
Confidence            56799999999999985 45889999988654  3345678899999999999999999776543              3


Q ss_pred             eEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC-CCCCeEEccC
Q 006559          401 ELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDI  479 (640)
Q Consensus       401 ~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~-~~~~~kl~Df  479 (640)
                      ..++||||++ ++|.+++...      .+++.....++.|++.||.|||+   .+|+||||||+||+++ +++.+|++||
T Consensus        90 ~~~lv~e~~~-~~L~~~~~~~------~l~~~~~~~~~~qi~~aL~~LH~---~givH~dikp~Nili~~~~~~~kl~df  159 (342)
T cd07854          90 SVYIVQEYME-TDLANVLEQG------PLSEEHARLFMYQLLRGLKYIHS---ANVLHRDLKPANVFINTEDLVLKIGDF  159 (342)
T ss_pred             eEEEEeeccc-ccHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEcCCCceEEECCc
Confidence            5799999997 5898888642      47889999999999999999994   4599999999999998 4567899999


Q ss_pred             CcccccCCC---------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hH-HHHH
Q 006559          480 GVHQLFHTP---------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IV-KWVQ  548 (640)
Q Consensus       480 Gl~~~~~~~---------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~-~~~~  548 (640)
                      |+++.....         ..++..|+|||++.      ....++.++|||||||++|||++|+.||...... .. ....
T Consensus       160 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~------~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~~~~~  233 (342)
T cd07854         160 GLARIVDPHYSHKGYLSEGLVTKWYRSPRLLL------SPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILE  233 (342)
T ss_pred             ccceecCCccccccccccccccccccCHHHHh------CccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            998765321         23466799999642      2234678999999999999999999999643211 00 0000


Q ss_pred             Hhhcc-c----cccc-----cc-chhhccC---hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          549 MMGQD-E----SAWE-----VF-DFELIMD---KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       549 ~~~~~-~----~~~~-----~~-d~~~~~~---~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..... .    ....     .. +......   ........++.+++..|++.||++||++.+++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~  299 (342)
T cd07854         234 SVPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALM  299 (342)
T ss_pred             hcCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhC
Confidence            00000 0    0000     00 0000000   000112245778889999999999999999974

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.97  E-value=9.3e-32  Score=238.27  Aligned_cols=189  Identities=22%  Similarity=0.421  Sum_probs=161.0

Q ss_pred             hccccccCcceEEEEE-eCCCcEEEEEEeccccc----hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVV-LDGGDVVVVKRIRERKK----KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~~~----~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      -|+||+|.||+||+|+ ...++.||+|+++....    .....+|+.+++.++|.|||+++++...+..+-+|+|||.. 
T Consensus         7 mekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~cdq-   85 (292)
T KOG0662|consen    7 MEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ-   85 (292)
T ss_pred             HHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHHhhH-
Confidence            4679999999999999 55688899999875422    34567899999999999999999999999999999999965 


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|..+.....+    .++......++.|+.+||.|+|+.+   +.|||+||.|.||+.+|+.|++|||+++.++-+    
T Consensus        86 dlkkyfdslng----~~d~~~~rsfmlqllrgl~fchshn---vlhrdlkpqnllin~ngelkladfglarafgipvrcy  158 (292)
T KOG0662|consen   86 DLKKYFDSLNG----DLDPEIVRSFMLQLLRGLGFCHSHN---VLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCY  158 (292)
T ss_pred             HHHHHHHhcCC----cCCHHHHHHHHHHHHhhhhhhhhhh---hhhccCCcceEEeccCCcEEecccchhhhcCCceEee
Confidence            88888765543    4788889999999999999999655   999999999999999999999999999988744    


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGE  540 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~  540 (640)
                        .+.|.+|++|.++.++      .-|++..|+||.||++.|+.. |++.|.+++
T Consensus       159 saevvtlwyrppdvlfga------kly~tsidmwsagcifaelanagrplfpg~d  207 (292)
T KOG0662|consen  159 SAEVVTLWYRPPDVLFGA------KLYSTSIDMWSAGCIFAELANAGRPLFPGND  207 (292)
T ss_pred             eceeeeeeccCcceeeee------ehhccchHhhhcchHHHHHhhcCCCCCCCCc
Confidence              3458899999997544      456788999999999999987 676676543

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.97  E-value=1.7e-31  Score=269.48  Aligned_cols=238  Identities=21%  Similarity=0.273  Sum_probs=178.8

Q ss_pred             hccccccCcceEEEEEeCC-CcEEEEEEeccc-------cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVLDG-GDVVVVKRIRER-------KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~-------~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .+.||+|+||.||+++... +..+++|.++..       ....++..|+.++++++||||+++++++.+.+..++||||+
T Consensus         5 ~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (260)
T cd08222           5 QQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIITEYC   84 (260)
T ss_pred             eeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEEEeC
Confidence            4679999999999998543 444555555431       12234567888999999999999999999889999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--  487 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--  487 (640)
                      ++++|.+++..... ....+++..++.++.|++.||.|||+   .+++|+||||+||++++ +.+||+|||+++....  
T Consensus        85 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~~~  159 (260)
T cd08222          85 EGRDLDCKLEELKH-TGKTLSENQVCEWFIQLLLGVHYMHQ---RRILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMGSC  159 (260)
T ss_pred             CCCCHHHHHHHHhh-cccccCHHHHHHHHHHHHHHHHHHHH---cCccccCCChhheEeec-CCEeecccCceeecCCCc
Confidence            99999998864321 12358999999999999999999994   56999999999999975 5699999999876532  


Q ss_pred             ----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchh
Q 006559          488 ----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       488 ----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                          ...++..|+|||..       ....++.++||||||+++|||++|+.||....  ............      .+.
T Consensus       160 ~~~~~~~~~~~~~~pe~~-------~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~------~~~  224 (260)
T cd08222         160 DLATTFTGTPYYMSPEAL-------KHQGYDSKSDIWSLGCILYEMCCLAHAFEGQN--FLSVVLRIVEGP------TPS  224 (260)
T ss_pred             ccccCCCCCcCccCHHHH-------ccCCCCchhhHHHHHHHHHHHHhCCCCCCCcc--HHHHHHHHHcCC------CCC
Confidence                22346689999954       33456778999999999999999999996432  222211111110      000


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                        .+   .....++.+++.+||..+|++||++.++++
T Consensus       225 --~~---~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  256 (260)
T cd08222         225 --LP---ETYSRQLNSIMQSMLNKDPSLRPSAAEILR  256 (260)
T ss_pred             --Cc---chhcHHHHHHHHHHhcCChhhCcCHHHHhh
Confidence              11   122345677888999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.97  E-value=4.1e-31  Score=278.18  Aligned_cols=247  Identities=17%  Similarity=0.269  Sum_probs=179.2

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcC------CeEEEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGK------DELFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------~~~~lV~  406 (640)
                      .+.||+|+||.||+|.. .+++.||+|++....    ..+.+.+|++++++++||||+++.+++...      ...|+++
T Consensus        22 ~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~  101 (345)
T cd07877          22 LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVT  101 (345)
T ss_pred             EEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeeecccccccccEEEEe
Confidence            46799999999999984 568899999987531    234567799999999999999999988643      3478888


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      |++ +++|.+++...      .+++..+..++.|+++||+|||+   .+|+||||||+||++++++.+||+|||+++...
T Consensus       102 ~~~-~~~L~~~~~~~------~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~~  171 (345)
T cd07877         102 HLM-GADLNNIVKCQ------KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTD  171 (345)
T ss_pred             hhc-ccCHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChHHEEEcCCCCEEEeccccccccc
Confidence            887 78998887643      47899999999999999999994   559999999999999999999999999987654


Q ss_pred             CC---ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc--hHHHHHHhhccc-ccc-cc
Q 006559          487 TP---FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG--IVKWVQMMGQDE-SAW-EV  559 (640)
Q Consensus       487 ~~---~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~--~~~~~~~~~~~~-~~~-~~  559 (640)
                      ..   ..++..|+|||+..      ....++.++|||||||++|||++|+.||......  .....+...... ... .+
T Consensus       172 ~~~~~~~~~~~y~aPE~~~------~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (345)
T cd07877         172 DEMTGYVATRWYRAPEIML------NWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKI  245 (345)
T ss_pred             ccccccccCCCccCHHHHh------CccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHhhc
Confidence            32   34477899999642      2234678999999999999999999998643211  111111111000 000 00


Q ss_pred             cch-------hhc--cChHHH----HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 FDF-------ELI--MDKEME----EEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 ~d~-------~~~--~~~~~~----~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .+.       .+.  ......    ....++.+++..|++.||++||++.+++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~  299 (345)
T cd07877         246 SSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  299 (345)
T ss_pred             ccHhHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhc
Confidence            000       000  000000    11235678888999999999999998864

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.97  E-value=2.1e-31  Score=280.24  Aligned_cols=247  Identities=19%  Similarity=0.301  Sum_probs=181.8

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCe------EEEEE
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDE------LFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~------~~lV~  406 (640)
                      .+.||+|+||.||+|+.. ++..||||++...    ...+.+..|+.++++++||||+++.+++...+.      .++|+
T Consensus        20 ~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~   99 (343)
T cd07851          20 LSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDFQDVYLVT   99 (343)
T ss_pred             EEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccccccEEEEE
Confidence            467999999999999964 5788999988643    123456678999999999999999998766554      89999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||+ +++|.+++...      .+++..+..++.|+++||+|||+   .+|+||||||+||++++++.+||+|||++....
T Consensus       100 e~~-~~~L~~~~~~~------~l~~~~~~~~~~ql~~aL~~LH~---~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~  169 (343)
T cd07851         100 HLM-GADLNNIVKCQ------KLSDDHIQFLVYQILRGLKYIHS---AGIIHRDLKPSNIAVNEDCELKILDFGLARHTD  169 (343)
T ss_pred             ecC-CCCHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCCEEEcccccccccc
Confidence            998 56999988742      48899999999999999999994   569999999999999999999999999987654


Q ss_pred             C---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHH-HHhhccc-cc-ccc
Q 006559          487 T---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWV-QMMGQDE-SA-WEV  559 (640)
Q Consensus       487 ~---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~-~~~~~~~-~~-~~~  559 (640)
                      .   ....+..|+|||+...      ...++.++|||||||++|||+||+.||...... ..... ....... .. ..+
T Consensus       170 ~~~~~~~~~~~y~aPE~~~~------~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  243 (343)
T cd07851         170 DEMTGYVATRWYRAPEIMLN------WMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKI  243 (343)
T ss_pred             ccccCCcccccccCHHHHhC------CCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHhcCCCCHHHHhhc
Confidence            3   2345778999996521      224678999999999999999999999743221 11111 1000000 00 000


Q ss_pred             c--------c-hhhccChH----HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 F--------D-FELIMDKE----MEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 ~--------d-~~~~~~~~----~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .        . ........    ......++.+++.+|++.+|++|||+.+|++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~  297 (343)
T cd07851         244 SSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALA  297 (343)
T ss_pred             cchhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhc
Confidence            0        0 00000000    0112356788999999999999999999865

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.97  E-value=3.6e-31  Score=270.16  Aligned_cols=249  Identities=22%  Similarity=0.341  Sum_probs=185.6

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|+.. +++.+|+|.+....    ..+.+..|+.++++++|+||+++++++...+..++||||++ +
T Consensus         4 ~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~-~   82 (282)
T cd07829           4 LEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYCD-M   82 (282)
T ss_pred             ehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCcC-c
Confidence            356999999999999965 48899999987642    23566788999999999999999999999999999999998 5


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.+++....    ..+++..+..++.|++.||+|||+   .+|+||||+|+||++++++.+||+|||+++.....    
T Consensus        83 ~l~~~i~~~~----~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~  155 (282)
T cd07829          83 DLKKYLDKRP----GPLSPNLIKSIMYQLLRGLAYCHS---HRILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTY  155 (282)
T ss_pred             CHHHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChheEEEcCCCCEEEecCCcccccCCCcccc
Confidence            9999997542    258899999999999999999995   45999999999999999999999999998765432    


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHHHHHHhhc--ccccccc----
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVKWVQMMGQ--DESAWEV----  559 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~~~~~~~~--~~~~~~~----  559 (640)
                        ...+..|+|||.+.      ....++.++|||||||++|||++|+.||..... .....+.....  .+..+..    
T Consensus       156 ~~~~~~~~~~aPE~~~------~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (282)
T cd07829         156 THEVVTLWYRAPEILL------GSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKL  229 (282)
T ss_pred             CccccCcCcCChHHhc------CCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhccc
Confidence              22356799999652      223567899999999999999999999875321 11111111000  0000000    


Q ss_pred             --cch---hhcc---ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 --FDF---ELIM---DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 --~d~---~~~~---~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                        .+.   ....   ..........+.+++..||+.+|++||++.+++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  278 (282)
T cd07829         230 PDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALK  278 (282)
T ss_pred             ccccccccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhh
Confidence              000   0000   0001112346888999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=2.3e-31  Score=285.88  Aligned_cols=244  Identities=18%  Similarity=0.306  Sum_probs=196.0

Q ss_pred             hhccccccCcceEEEEE-eCCCcEEEEEEeccc-cchHHHHHHHHHHhcc-CCCcccceeEEEEc-----CCeEEEEEec
Q 006559          337 SAELLGKGCVGATYKVV-LDGGDVVVVKRIRER-KKKREVDEWLRVIGGL-RHSNIVSIRAYCNG-----KDELFLVYDY  408 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~-----~~~~~lV~Ey  408 (640)
                      ..++||+|.+|.||+++ .++++.+|||++... ...++++.|.++++.+ .|||++.++|++..     ++++||||||
T Consensus        23 i~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~DqLWLVMEf  102 (953)
T KOG0587|consen   23 IIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQLWLVMEF  102 (953)
T ss_pred             EEEEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCeEEEEeec
Confidence            36789999999999999 567889999998765 4466788888888877 58999999999864     5789999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-  487 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-  487 (640)
                      |.+|+..++++...+   ..+.|..+..|++++++|++|||   ..+++|||+|-.|||++.++.+|++|||++..++. 
T Consensus       103 C~gGSVTDLVKn~~g---~rl~E~~IaYI~re~lrgl~HLH---~nkviHRDikG~NiLLT~e~~VKLvDFGvSaQldsT  176 (953)
T KOG0587|consen  103 CGGGSVTDLVKNTKG---NRLKEEWIAYILREILRGLAHLH---NNKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDST  176 (953)
T ss_pred             cCCccHHHHHhhhcc---cchhhHHHHHHHHHHHHHHHHHh---hcceeeecccCceEEEeccCcEEEeeeeeeeeeecc
Confidence            999999999987652   35899999999999999999999   56699999999999999999999999999877653 


Q ss_pred             -----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccch
Q 006559          488 -----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       488 -----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                           ..++|+.|||||++.....  ....|+.++|+||+|++..||.-|.+|+.+-.-  +   +      .+..+...
T Consensus       177 ~grRnT~iGtP~WMAPEViac~e~--~d~tyd~R~D~WsLGITaIEladG~PPl~DmHP--m---r------aLF~IpRN  243 (953)
T KOG0587|consen  177 VGRRNTFIGTPYWMAPEVIACDES--PDATYDYRSDLWSLGITAIEMAEGAPPLCDMHP--M---R------ALFLIPRN  243 (953)
T ss_pred             cccccCcCCCcccccceeeecccC--CCCCcccccchhhccceeehhcCCCCCccCcch--h---h------hhccCCCC
Confidence                 4577999999998754422  234578899999999999999999999854221  1   1      11122111


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVH  599 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~  599 (640)
                      ........+....++.+++..|+..|-++||++.+.+
T Consensus       244 PPPkLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll  280 (953)
T KOG0587|consen  244 PPPKLKRPKKWSKKFNDFISTCLVKDYEQRPSTEELL  280 (953)
T ss_pred             CCccccchhhHHHHHHHHHHHHHhhccccCcchhhhc
Confidence            1111123356777888899999999999999998876

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.97  E-value=2.1e-31  Score=265.11  Aligned_cols=219  Identities=21%  Similarity=0.242  Sum_probs=168.8

Q ss_pred             cCcceEEEEEe-CCCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHHhhccCC
Q 006559          344 GCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSR  422 (640)
Q Consensus       344 G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~~l~~~~  422 (640)
                      |.||.||+++. .+++.+|+|.+....   .+..|...+....||||+++++++...+..++||||+++|+|.+++....
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~   80 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS---EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKFL   80 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh---hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHHhc
Confidence            89999999995 567899999987542   23344455555679999999999999999999999999999999987543


Q ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---ccccccccCCc
Q 006559          423 GPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---FFINDAYNAPE  499 (640)
Q Consensus       423 ~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---~~~~~~y~aPE  499 (640)
                           .+++.....++.|++.||+|||   +.+|+||||||+||+++.++.++++|||.+......   ...+..|+|||
T Consensus        81 -----~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~y~aPE  152 (237)
T cd05576          81 -----NIPEECVKRWAAEMVVALDALH---REGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDGEAVENMYCAPE  152 (237)
T ss_pred             -----CCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEEcCCCCEEEecccchhccccccccCCcCccccCCc
Confidence                 4889999999999999999999   456999999999999999999999999987665432   23356799999


Q ss_pred             cccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHHHHHHHHH
Q 006559          500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQ  579 (640)
Q Consensus       500 ~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~  579 (640)
                      ..       ....++.++||||+||++|||++|+.|+.......        ..     ...  +..+..   ...++.+
T Consensus       153 ~~-------~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~~--------~~-----~~~--~~~~~~---~~~~~~~  207 (237)
T cd05576         153 VG-------GISEETEACDWWSLGAILFELLTGKTLVECHPSGI--------NT-----HTT--LNIPEW---VSEEARS  207 (237)
T ss_pred             cc-------CCCCCCchhhHHHHHHHHHHHHHCcchhhcCchhc--------cc-----ccc--cCCccc---CCHHHHH
Confidence            53       34456789999999999999999998875321100        00     000  001111   1234667


Q ss_pred             HHHHccCCCCCCCCCHHHH
Q 006559          580 VALLCLAPLPKDRPNMSIV  598 (640)
Q Consensus       580 l~~~Cl~~~P~~RPs~~~v  598 (640)
                      ++.+|++.||++||++.+.
T Consensus       208 li~~~l~~dp~~R~~~~~~  226 (237)
T cd05576         208 LLQQLLQFNPTERLGAGVA  226 (237)
T ss_pred             HHHHHccCCHHHhcCCCcc
Confidence            7888999999999997544

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=6e-32  Score=259.50  Aligned_cols=256  Identities=22%  Similarity=0.287  Sum_probs=192.2

Q ss_pred             ChHHHHHHhhccccccCcceEEEEE-eCCCcEEEEEEeccc--cchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEE
Q 006559          329 NVGDLLKSSAELLGKGCVGATYKVV-LDGGDVVVVKRIRER--KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFL  404 (640)
Q Consensus       329 ~~~~~~~~~~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  404 (640)
                      .++|+++-+.++||+|+|+.|--++ +.+|.++|||++.+.  ..+..+.+|++++..- .|+||++|+++|.++..+||
T Consensus        74 ~F~d~YkLt~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYL  153 (463)
T KOG0607|consen   74 KFEDMYKLTSELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYL  153 (463)
T ss_pred             hHHHHHHhHHHHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEE
Confidence            4688888889999999999998887 788999999999766  4456677888887765 59999999999999999999


Q ss_pred             EEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC---CeEEccCCc
Q 006559          405 VYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG---NACISDIGV  481 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~---~~kl~DfGl  481 (640)
                      |||-|.+|.|..++++.+     .++..+.-++..+||.||.|||   ..+|.||||||+|||-....   -+|||||-|
T Consensus       154 VfEKm~GGplLshI~~~~-----~F~E~EAs~vvkdia~aLdFlH---~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDL  225 (463)
T KOG0607|consen  154 VFEKMRGGPLLSHIQKRK-----HFNEREASRVVKDIASALDFLH---TKGIAHRDLKPENILCESPNKVSPVKICDFDL  225 (463)
T ss_pred             EEecccCchHHHHHHHhh-----hccHHHHHHHHHHHHHHHHHHh---hcCcccccCCccceeecCCCCcCceeeecccc
Confidence            999999999999998654     6889999999999999999999   56699999999999986543   589999987


Q ss_pred             ccccC---------C----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 006559          482 HQLFH---------T----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQ  548 (640)
Q Consensus       482 ~~~~~---------~----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~  548 (640)
                      ..-..         +    ..+++..|||||+...-  ......|+.+.|.||+|||||-|+.|.+||.+.-...--|-+
T Consensus       226 gSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~f--v~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdr  303 (463)
T KOG0607|consen  226 GSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVF--VDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDR  303 (463)
T ss_pred             ccccccCCCCCCCCCccccCcccchhhcchhHHhhh--ccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCccC
Confidence            54321         1    13456789999975311  223456889999999999999999999999854333333321


Q ss_pred             Hhhcc-----------cccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          549 MMGQD-----------ESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       549 ~~~~~-----------~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .-.-.           +-..++-|.++   ..++.+.++++   ...+..||.+|-++.+++.
T Consensus       304 Ge~Cr~CQ~~LFesIQEGkYeFPdkdW---ahIS~eakdli---snLlvrda~~rlsa~~vln  360 (463)
T KOG0607|consen  304 GEVCRVCQNKLFESIQEGKYEFPDKDW---AHISSEAKDLI---SNLLVRDAKQRLSAAQVLN  360 (463)
T ss_pred             CCccHHHHHHHHHHHhccCCcCChhhh---HHhhHHHHHHH---HHHHhccHHhhhhhhhccC
Confidence            11100           00111111111   12344444444   4466689999999888875

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=9.9e-32  Score=297.29  Aligned_cols=237  Identities=23%  Similarity=0.331  Sum_probs=172.9

Q ss_pred             ccccccCcceEEEEEe-CCCcEEEEEEeccccc---hHHHHHHHHHHhccCCCcccceeEEE------------------
Q 006559          339 ELLGKGCVGATYKVVL-DGGDVVVVKRIRERKK---KREVDEWLRVIGGLRHSNIVSIRAYC------------------  396 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~---~~~~~~e~~~l~~l~H~niv~l~~~~------------------  396 (640)
                      ++||+||||.|||++- -||..+|||++.-...   ...+.+|+.++++|+|||||+++..+                  
T Consensus       485 ~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~~~ei~~~~~~  564 (1351)
T KOG1035|consen  485 ELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELTVLEIVASDSE  564 (1351)
T ss_pred             HHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCccccccccccchh
Confidence            5799999999999994 4799999999986632   34567899999999999999997321                  


Q ss_pred             ------------------------------------------E------c------------------------------
Q 006559          397 ------------------------------------------N------G------------------------------  398 (640)
Q Consensus       397 ------------------------------------------~------~------------------------------  398 (640)
                                                                .      .                              
T Consensus       565 ~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS~~e~~~~~d~  644 (1351)
T KOG1035|consen  565 SRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTSDSEGSVILDD  644 (1351)
T ss_pred             hhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCcccccccccccccccccccCCccccCc
Confidence                                                      0      0                              


Q ss_pred             ---------------C--------CeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCC
Q 006559          399 ---------------K--------DELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAH  455 (640)
Q Consensus       399 ---------------~--------~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~  455 (640)
                                     +        ..+||=||||+.-.++++++.+...    -.-...++++++|++||.|+|   ..+
T Consensus       645 ~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~----~~~d~~wrLFreIlEGLaYIH---~~g  717 (1351)
T KOG1035|consen  645 TSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFN----SQRDEAWRLFREILEGLAYIH---DQG  717 (1351)
T ss_pred             chhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccc----hhhHHHHHHHHHHHHHHHHHH---hCc
Confidence                           0        1368889999998888888765411    034677889999999999999   455


Q ss_pred             ceecCCCCCCeEECCCCCeEEccCCcccccC------------------------CCccccccccCCccccCCCCccccC
Q 006559          456 LFHGHLSSSNIVVDQLGNACISDIGVHQLFH------------------------TPFFINDAYNAPELKFNNNNNYSQR  511 (640)
Q Consensus       456 ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~------------------------~~~~~~~~y~aPE~~~~~~~~~~~~  511 (640)
                      ||||||||.||+||++..+||+|||++....                        +..++|.-|+|||++...    ...
T Consensus       718 iIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~----~~~  793 (1351)
T KOG1035|consen  718 IIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDT----SSN  793 (1351)
T ss_pred             eeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhccc----ccc
Confidence            9999999999999999999999999987621                        124568889999987432    124


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh-HHHHHHHHHHHHHHHccCCCCC
Q 006559          512 KFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK-EMEEEMRALLQVALLCLAPLPK  590 (640)
Q Consensus       512 ~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~l~~l~~~Cl~~~P~  590 (640)
                      .|+.|+|+||+|||++||+.   ||... +.-+..+..+..         ..+..+. ...+.+..-.+++.++++.||.
T Consensus       794 ~Yn~KiDmYSLGIVlFEM~y---PF~Ts-MERa~iL~~LR~---------g~iP~~~~f~~~~~~~e~slI~~Ll~hdP~  860 (1351)
T KOG1035|consen  794 KYNSKIDMYSLGIVLFEMLY---PFGTS-MERASILTNLRK---------GSIPEPADFFDPEHPEEASLIRWLLSHDPS  860 (1351)
T ss_pred             cccchhhhHHHHHHHHHHhc---cCCch-HHHHHHHHhccc---------CCCCCCcccccccchHHHHHHHHHhcCCCc
Confidence            78999999999999999996   56421 222222222221         1111110 0112223334567779999999


Q ss_pred             CCCCHHHHH
Q 006559          591 DRPNMSIVH  599 (640)
Q Consensus       591 ~RPs~~~v~  599 (640)
                      +|||+.|++
T Consensus       861 kRPtA~eLL  869 (1351)
T KOG1035|consen  861 KRPTATELL  869 (1351)
T ss_pred             cCCCHHHHh
Confidence            999999886

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=6.3e-32  Score=259.68  Aligned_cols=228  Identities=23%  Similarity=0.341  Sum_probs=180.6

Q ss_pred             HhhccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHH---HHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          336 SSAELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREV---DEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       336 ~~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~---~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .+.++||+|.||+|-+++- ..++.+|+|++++.  ..+.++   ..|-++|+.-+||.+..|...|+..+.+|+||||+
T Consensus       171 dfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFVMeya  250 (516)
T KOG0690|consen  171 DFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFVMEYA  250 (516)
T ss_pred             hHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEEEEEc
Confidence            3467899999999999985 46889999999876  234443   35778999999999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccccc----
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF----  485 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~----  485 (640)
                      .+|.|.-+|...+     .++......+-.+|..||.|||+.+   ||.||||.+|.|||.+|++||+|||+++.-    
T Consensus       251 nGGeLf~HLsrer-----~FsE~RtRFYGaEIvsAL~YLHs~~---ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~g  322 (516)
T KOG0690|consen  251 NGGELFFHLSRER-----VFSEDRTRFYGAEIVSALGYLHSRN---IVYRDLKLENLLLDKDGHIKITDFGLCKEEIKYG  322 (516)
T ss_pred             cCceEeeehhhhh-----cccchhhhhhhHHHHHHhhhhhhCC---eeeeechhhhheeccCCceEeeecccchhccccc
Confidence            9999998887654     5777777888999999999999654   999999999999999999999999998753    


Q ss_pred             --CCCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHhhcccccccccch
Q 006559          486 --HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       486 --~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~  562 (640)
                        ...+++|+.|.|||++       ....|+..+|.|.+||++|||+.|+.||...+.+ +.+.+            .-.
T Consensus       323 ~t~kTFCGTPEYLAPEVl-------eDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~kLFeLI------------l~e  383 (516)
T KOG0690|consen  323 DTTKTFCGTPEYLAPEVL-------EDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEKLFELI------------LME  383 (516)
T ss_pred             ceeccccCChhhcCchhh-------ccccccceeehhhhhHHHHHHHhccCcccccchhHHHHHH------------Hhh
Confidence              2357889999999975       4556778999999999999999999999854332 22211            111


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCC
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRP  593 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RP  593 (640)
                      .+..+..+..+.+.++   ...+..||++|-
T Consensus       384 d~kFPr~ls~eAktLL---sGLL~kdP~kRL  411 (516)
T KOG0690|consen  384 DLKFPRTLSPEAKTLL---SGLLKKDPKKRL  411 (516)
T ss_pred             hccCCccCCHHHHHHH---HHHhhcChHhhc
Confidence            1222223334444443   447889999996

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.97  E-value=5.9e-31  Score=298.32  Aligned_cols=138  Identities=22%  Similarity=0.344  Sum_probs=122.2

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|... .+..||||+++...     ....+..|+.++..++||||+++++++...+..|+||||+++
T Consensus         9 ~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVmEy~~g   88 (669)
T cd05610           9 VKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVMEYLIG   88 (669)
T ss_pred             EEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEEeCCCC
Confidence            467999999999999965 68899999987542     135677889999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccc
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ  483 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~  483 (640)
                      |+|.+++....     .+++...+.|+.||+.||+|||.   .+||||||||+|||++.++.+||+|||+++
T Consensus        89 ~~L~~li~~~~-----~l~~~~~~~i~~qil~aL~yLH~---~gIiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610          89 GDVKSLLHIYG-----YFDEEMAVKYISEVALALDYLHR---HGIIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             CCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            99999997543     47888899999999999999995   469999999999999999999999999875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2.7e-31  Score=264.47  Aligned_cols=243  Identities=21%  Similarity=0.286  Sum_probs=182.8

Q ss_pred             ccccccCcceEEEEE-eCCCcEEEEEEeccccch---------HHHHHHHHHHhccCCCcccceeEEEEc-CCeEEEEEe
Q 006559          339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKK---------REVDEWLRVIGGLRHSNIVSIRAYCNG-KDELFLVYD  407 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~~~~---------~~~~~e~~~l~~l~H~niv~l~~~~~~-~~~~~lV~E  407 (640)
                      ++||+|||+.||++. +...+.||||+-...+..         +...+|.++.+.|+||.||++++++.- .+.+|-|+|
T Consensus       469 hLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsFCTVLE  548 (775)
T KOG1151|consen  469 HLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSFCTVLE  548 (775)
T ss_pred             HHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccceeeee
Confidence            579999999999998 566788999986544221         234567889999999999999999864 578999999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC---CCCCeEEccCCcccc
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD---QLGNACISDIGVHQL  484 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~---~~~~~kl~DfGl~~~  484 (640)
                      ||++.+|.-||+..+     .++..+...|+.||..||.||... +++|||-||||.||||.   ..|.+||.||||++.
T Consensus       549 YceGNDLDFYLKQhk-----lmSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKI  622 (775)
T KOG1151|consen  549 YCEGNDLDFYLKQHK-----LMSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKI  622 (775)
T ss_pred             ecCCCchhHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEeeecchhhh
Confidence            999999999998665     578889999999999999999976 57899999999999995   568999999999998


Q ss_pred             cCCC-------------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhh
Q 006559          485 FHTP-------------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMG  551 (640)
Q Consensus       485 ~~~~-------------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~  551 (640)
                      +...             ..+|-+|.+||.+.-..   ...+++.|+||||.||++|..+.|+.||+.+... -..+    
T Consensus       623 MdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgk---ePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQ-QdIL----  694 (775)
T KOG1151|consen  623 MDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGK---EPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQ-QDIL----  694 (775)
T ss_pred             ccCCccCcccceeeecccCceeeecCcceeecCC---CCCccccceeeEeeehhhhhhhccCCCCCCchhH-HHHH----
Confidence            7532             34577899999874321   1356789999999999999999999999854221 1111    


Q ss_pred             cccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 006559          552 QDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIV  598 (640)
Q Consensus       552 ~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v  598 (640)
                      ++..+...-.......+....+   .-.++.+|++..-++|-...++
T Consensus       695 qeNTIlkAtEVqFP~KPvVsse---AkaFIRRCLaYRKeDR~DV~qL  738 (775)
T KOG1151|consen  695 QENTILKATEVQFPPKPVVSSE---AKAFIRRCLAYRKEDRIDVQQL  738 (775)
T ss_pred             hhhchhcceeccCCCCCccCHH---HHHHHHHHHHhhhhhhhhHHHH
Confidence            1111111111122222223333   3456677999999999765544

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.97  E-value=1.3e-30  Score=288.53  Aligned_cols=256  Identities=18%  Similarity=0.254  Sum_probs=161.3

Q ss_pred             hhccccccCcceEEEEEeCC-----CcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEE------EEcCCeEEEE
Q 006559          337 SAELLGKGCVGATYKVVLDG-----GDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAY------CNGKDELFLV  405 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~-----~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~------~~~~~~~~lV  405 (640)
                      ..+.||+|+||.||+|+..+     +..||||++......+....+  .+....+.+++.+...      +......++|
T Consensus       136 l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LV  213 (566)
T PLN03225        136 LGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVEIWMNE--RVRRACPNSCADFVYGFLEPVSSKKEDEYWLV  213 (566)
T ss_pred             EeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchhHHHHHH--HHHhhchhhHHHHHHhhhcccccccCCceEEE
Confidence            35789999999999999754     578999988654322221111  1222223333332221      2345689999


Q ss_pred             EeccCCCCHHHhhccCCCC---------------CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC
Q 006559          406 YDYLPHGSLHSLLHGSRGP---------------GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ  470 (640)
Q Consensus       406 ~Ey~~~gsL~~~l~~~~~~---------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~  470 (640)
                      |||+++++|.+++......               .........+..++.|++.||+|||+   .+|+||||||+|||++.
T Consensus       214 ~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~---~gIiHRDLKP~NILl~~  290 (566)
T PLN03225        214 WRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHS---TGIVHRDVKPQNIIFSE  290 (566)
T ss_pred             EEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHH---CCEEeCcCCHHHEEEeC
Confidence            9999999999998753210               00011223456789999999999994   46999999999999985


Q ss_pred             -CCCeEEccCCcccccC-------CCccccccccCCccccCCCCccc---------------cCCCCCccchHHHHHHHH
Q 006559          471 -LGNACISDIGVHQLFH-------TPFFINDAYNAPELKFNNNNNYS---------------QRKFWQRCDVYSFGVVLL  527 (640)
Q Consensus       471 -~~~~kl~DfGl~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~---------------~~~~~~k~DV~SfGvvl~  527 (640)
                       ++.+||+|||+++.+.       .....++.|+|||.+.+......               ...++.++|||||||+||
T Consensus       291 ~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL~  370 (566)
T PLN03225        291 GSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFL  370 (566)
T ss_pred             CCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcccHHHHHHHH
Confidence             6899999999997643       23455789999996543322111               123567889999999999


Q ss_pred             HHHhCCCCCCCCCcchHHHHHHhhccc---cccc-ccchhhccC-----hHHHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 006559          528 EILTGKMAKGDGELGIVKWVQMMGQDE---SAWE-VFDFELIMD-----KEMEEEMRALLQVALLCLAPLPKDRPNMSIV  598 (640)
Q Consensus       528 el~tg~~p~~~~~~~~~~~~~~~~~~~---~~~~-~~d~~~~~~-----~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v  598 (640)
                      ||+++..+++..   ...+.+......   ..|. ........+     +..........+++.+|++.||++|||+.++
T Consensus       371 el~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~dP~kR~ta~e~  447 (566)
T PLN03225        371 QMAFPNLRSDSN---LIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMRFKGRQRISAKAA  447 (566)
T ss_pred             HHHhCcCCCchH---HHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHccCCcccCCCHHHH
Confidence            999988776432   111111111100   0000 000000000     0000111234578888999999999999999


Q ss_pred             HH
Q 006559          599 HR  600 (640)
Q Consensus       599 ~~  600 (640)
                      ++
T Consensus       448 L~  449 (566)
T PLN03225        448 LA  449 (566)
T ss_pred             hC
Confidence            76

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=5.6e-31  Score=289.11  Aligned_cols=192  Identities=20%  Similarity=0.289  Sum_probs=164.6

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..++||+|+||.|..++++ .++++|+|++.+.     ....-|.+|-.+|..-+.+.||.+...|.+...+|+|||||+
T Consensus        79 ilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~~LYlVMdY~p  158 (1317)
T KOG0612|consen   79 ILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDERYLYLVMDYMP  158 (1317)
T ss_pred             HHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCccceEEEEeccc
Confidence            3568999999999999975 5788999999763     334568888889988889999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC----
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH----  486 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~----  486 (640)
                      ||+|-.++....     +++..-...++..|..||.-||   ..++|||||||+|||||.+|++||+|||-+-.+.    
T Consensus       159 GGDlltLlSk~~-----~~pE~~ArFY~aEiVlAldslH---~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~dG~  230 (1317)
T KOG0612|consen  159 GGDLLTLLSKFD-----RLPEDWARFYTAEIVLALDSLH---SMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADGT  230 (1317)
T ss_pred             CchHHHHHhhcC-----CChHHHHHHHHHHHHHHHHHHH---hccceeccCCcceeEecccCcEeeccchhHHhcCCCCc
Confidence            999999998653     4666667778999999999999   5669999999999999999999999999876554    


Q ss_pred             ---CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCC
Q 006559          487 ---TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD  538 (640)
Q Consensus       487 ---~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~  538 (640)
                         ...++|+.|++||++.....  ..+.|+..+|.||+||++|||+.|..||..
T Consensus       231 V~s~~aVGTPDYISPEvLqs~~~--~~g~yG~ecDwWSlGV~~YEMlyG~TPFYa  283 (1317)
T KOG0612|consen  231 VRSSVAVGTPDYISPEVLQSQGD--GKGEYGRECDWWSLGVFMYEMLYGETPFYA  283 (1317)
T ss_pred             EEeccccCCCCccCHHHHHhhcC--CccccCCccchhhhHHHHHHHHcCCCcchH
Confidence               23568999999999864322  246789999999999999999999999974

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=3.8e-31  Score=261.41  Aligned_cols=228  Identities=21%  Similarity=0.300  Sum_probs=175.3

Q ss_pred             hhccccccCcceEEEEEeCC-CcEEEEEEeccccc-----hHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLDG-GDVVVVKRIRERKK-----KREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~~~-----~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      +..+||+|+||.|.++..++ .+.+|||++++.-.     -+--+.|-++|.-. +-|.++++..+|+..+.+|+||||+
T Consensus       353 Fl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyFVMEyv  432 (683)
T KOG0696|consen  353 FLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYFVMEYV  432 (683)
T ss_pred             eEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheeeEEEEe
Confidence            35789999999999998655 56799999987611     11123455555543 4688999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccccc----
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF----  485 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~----  485 (640)
                      .+|+|--+++...     .+.+.....+|.+||-||-|||   ..+||.||||..|||||.+|++||+|||+.+.-    
T Consensus       433 nGGDLMyhiQQ~G-----kFKEp~AvFYAaEiaigLFFLh---~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~~~  504 (683)
T KOG0696|consen  433 NGGDLMYHIQQVG-----KFKEPVAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIFDG  504 (683)
T ss_pred             cCchhhhHHHHhc-----ccCCchhhhhhHHHHHHhhhhh---cCCeeeeeccccceEeccCCceEeeecccccccccCC
Confidence            9999988887554     3666678889999999999999   556999999999999999999999999998753    


Q ss_pred             --CCCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchh
Q 006559          486 --HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       486 --~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                        ...+++|+.|+|||++       ..+.|+..+|.|||||+||||+.|++||++++.+.+           ...|.+..
T Consensus       505 ~TTkTFCGTPdYiAPEIi-------~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~el-----------F~aI~ehn  566 (683)
T KOG0696|consen  505 VTTKTFCGTPDYIAPEII-------AYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDEL-----------FQAIMEHN  566 (683)
T ss_pred             cceeeecCCCcccccceE-------EecccccchhHHHHHHHHHHHHcCCCCCCCCCHHHH-----------HHHHHHcc
Confidence              2356789999999975       456677889999999999999999999986543211           12233334


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCC
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRP  593 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RP  593 (640)
                      ...++.++.+...   +...-+...|.+|-
T Consensus       567 vsyPKslSkEAv~---ickg~ltK~P~kRL  593 (683)
T KOG0696|consen  567 VSYPKSLSKEAVA---ICKGLLTKHPGKRL  593 (683)
T ss_pred             CcCcccccHHHHH---HHHHHhhcCCcccc
Confidence            4455555554443   44446777888875

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.97  E-value=1.7e-29  Score=250.79  Aligned_cols=231  Identities=23%  Similarity=0.367  Sum_probs=183.3

Q ss_pred             CcceEEEEEeCC-CcEEEEEEeccccc---hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHHhhcc
Q 006559          345 CVGATYKVVLDG-GDVVVVKRIRERKK---KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHG  420 (640)
Q Consensus       345 ~fg~Vy~~~~~~-~~~vavK~l~~~~~---~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~~l~~  420 (640)
                      +||.||+|+..+ ++.+|+|.+.....   .+.+.+|++.+++++|+||+++.+++......++++||+++++|.+++..
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~   80 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK   80 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence            589999999764 88999999876533   57788999999999999999999999998999999999999999999875


Q ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-----ccccccc
Q 006559          421 SRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-----FFINDAY  495 (640)
Q Consensus       421 ~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-----~~~~~~y  495 (640)
                      ..     .+++..+..++.++++++.|||.   .+++|+||+|+||++++++.++++|||.+......     ...+..|
T Consensus        81 ~~-----~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~  152 (244)
T smart00220       81 RG-----RLSEDEARFYARQILSALEYLHS---NGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFVGTPEY  152 (244)
T ss_pred             cc-----CCCHHHHHHHHHHHHHHHHHHHH---cCeecCCcCHHHeEECCCCcEEEccccceeeeccccccccccCCcCC
Confidence            43     27889999999999999999994   46999999999999999999999999998876542     3446789


Q ss_pred             cCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHHHHH
Q 006559          496 NAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMR  575 (640)
Q Consensus       496 ~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  575 (640)
                      ++||..       ....++.++||||||+++|||++|+.||.... ......+........         ..........
T Consensus       153 ~~pE~~-------~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~  215 (244)
T smart00220      153 MAPEVL-------LGKGYGKAVDVWSLGVILYELLTGKPPFPGDD-QLLELFKKIGKPKPP---------FPPPEWKISP  215 (244)
T ss_pred             CCHHHH-------ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-cHHHHHHHHhccCCC---------CccccccCCH
Confidence            999964       34556789999999999999999999986521 112222222211100         0000000234


Q ss_pred             HHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          576 ALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       576 ~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ++.+++.+|+..+|++||++.++++
T Consensus       216 ~~~~~i~~~l~~~p~~Rp~~~~~~~  240 (244)
T smart00220      216 EAKDLIRKLLVKDPEKRLTAEEALQ  240 (244)
T ss_pred             HHHHHHHHHccCCchhccCHHHHhh
Confidence            5777888999999999999999986

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.97  E-value=8.9e-31  Score=249.69  Aligned_cols=241  Identities=20%  Similarity=0.245  Sum_probs=180.8

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccccchHHHHHHHHHHh-ccCCCcccceeEEEEc----CCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVIG-GLRHSNIVSIRAYCNG----KDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~~~~~e~~~l~-~l~H~niv~l~~~~~~----~~~~~lV~Ey~~  410 (640)
                      +.++||-|-.|.|..+.. ..|+.+|+|.+.+...   ..+|+++.- .-.|||||.++++|..    ...+.+|||.|+
T Consensus        66 s~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds~K---ARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiVmE~me  142 (400)
T KOG0604|consen   66 SWQVLGAGINGKVVQCVHKRTQEKFALKVLLDSPK---ARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLIVMECME  142 (400)
T ss_pred             hhhhhccccCCceEEEEeccchhhhHHHHHhcCHH---HHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEeeeeccc
Confidence            457899999999999885 4678899999886632   233444322 2369999999999864    456889999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC---CCCeEEccCCcccccCC
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ---LGNACISDIGVHQLFHT  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~---~~~~kl~DfGl~~~~~~  487 (640)
                      +|.|.+.++..+   ...+++.+.-.|+.||+.|+.|||+.+   |.||||||+|+|...   |-.+||+|||+|+....
T Consensus       143 GGeLfsriq~~g---~~afTErea~eI~~qI~~Av~~lH~~n---IAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~  216 (400)
T KOG0604|consen  143 GGELFSRIQDRG---DQAFTEREASEIMKQIGLAVRYLHSMN---IAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQE  216 (400)
T ss_pred             chHHHHHHHHcc---cccchHHHHHHHHHHHHHHHHHHHhcc---hhhccCChhheeeecCCCCcceEecccccccccCC
Confidence            999999998764   346999999999999999999999655   999999999999964   55799999999998653


Q ss_pred             C-----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHhhcccccccccc
Q 006559          488 P-----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQDESAWEVFD  561 (640)
Q Consensus       488 ~-----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d  561 (640)
                      .     .+.|+.|.|||++       ...+|+...|+||+||++|-|+.|-+||..+..- +..-++...... ..++-+
T Consensus       217 ~~~L~TPc~TPyYvaPevl-------g~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~aispgMk~rI~~g-qy~FP~  288 (400)
T KOG0604|consen  217 PGDLMTPCFTPYYVAPEVL-------GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKRRIRTG-QYEFPE  288 (400)
T ss_pred             CccccCCcccccccCHHHh-------CchhcCCCCCccchhHHHHHhhcCCCcccccCCccCChhHHhHhhcc-CccCCC
Confidence            2     3458899999964       5567888999999999999999999999854332 111111111000 011111


Q ss_pred             hhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       562 ~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                            ++.++..++..+++...+..+|++|-|+.+++.
T Consensus       289 ------pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~  321 (400)
T KOG0604|consen  289 ------PEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMD  321 (400)
T ss_pred             ------hhHhHHHHHHHHHHHHHhcCCchhheeHHHhhc
Confidence                  233344445556667789999999999998864

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.97  E-value=1.4e-30  Score=235.97  Aligned_cols=195  Identities=21%  Similarity=0.326  Sum_probs=156.7

Q ss_pred             hhccccccCcceEEEEE-eCCCcEEEEEEeccc---cchHHHHHHHHH-HhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          337 SAELLGKGCVGATYKVV-LDGGDVVVVKRIRER---KKKREVDEWLRV-IGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~---~~~~~~~~e~~~-l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ..+.||+|++|.|-+-+ ..+|+..|||+++..   +.++....|+.+ ++....|.+|.++|........++.||.|..
T Consensus        50 ~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME~M~t  129 (282)
T KOG0984|consen   50 GIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICMELMDT  129 (282)
T ss_pred             hhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHHHhhh
Confidence            35679999999998887 467999999999866   233444556654 4456789999999999999999999999965


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc--
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF--  489 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~--  489 (640)
                       ||..+-++.-.. ...+++...-+||..|..||.|||+  +..|||||+||+|||++.+|.+|+||||++-.+..+.  
T Consensus       130 -Sldkfy~~v~~~-g~~ipE~vlGkIa~Svv~al~~L~~--kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSiAk  205 (282)
T KOG0984|consen  130 -SLDKFYRKVLKK-GGTIPEDVLGKIAVSVVHALEFLHS--KLSVIHRDVKPSNILINYDGQVKICDFGISGYLVDSIAK  205 (282)
T ss_pred             -hHHHHHHHHHhc-CCcCchHHhhHhHHHHHHHHHHHHH--HhhhhhccCCcceEEEccCCcEEEcccccceeehhhhHH
Confidence             777664432211 1257788889999999999999997  5679999999999999999999999999988775432  


Q ss_pred             ---cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCC
Q 006559          490 ---FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD  538 (640)
Q Consensus       490 ---~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~  538 (640)
                         .+...|||||.+-..   .....|+-|+||||+|+.+.||.+++.||+.
T Consensus       206 t~daGCkpYmaPEri~~e---~n~~gY~vksDvWSLGItmiElA~lr~PY~~  254 (282)
T KOG0984|consen  206 TMDAGCKPYMAPERINPE---LNQKGYSVKSDVWSLGITMIEMAILRFPYES  254 (282)
T ss_pred             HHhcCCCccCChhhcCcc---cCcccceeehhhhhhhhhhhhhhhccccccc
Confidence               345689999976443   2334789999999999999999999999964

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.9e-30  Score=272.07  Aligned_cols=230  Identities=20%  Similarity=0.281  Sum_probs=176.6

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccccchHHHHHHHHHHh-ccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVIG-GLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~~~~~e~~~l~-~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ...+|.|+|+.|-++.. ..++..+||++.+.  ..+..+|+.++. .-+||||+++.+.+.+..+.|+|||++.+|-+.
T Consensus       327 ~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~--~~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e~l~g~ell  404 (612)
T KOG0603|consen  327 REELGEGSFSAVKYCESSPTDQEPAVKIISKR--ADDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVMELLDGGELL  404 (612)
T ss_pred             ccccCCCCccceeeeeccccccchhheecccc--ccccccccchhhhhcCCCcceeecceecCCceeeeeehhccccHHH
Confidence            34599999999988874 56788999998765  223334554433 347999999999999999999999999999888


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE-CCCCCeEEccCCcccccCCC---ccc
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV-DQLGNACISDIGVHQLFHTP---FFI  491 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl-~~~~~~kl~DfGl~~~~~~~---~~~  491 (640)
                      +.+....     .+. ..+..|+.+++.|+.|||.   .+||||||||+|||+ ++.+.++|+|||.++.....   .+.
T Consensus       405 ~ri~~~~-----~~~-~e~~~w~~~lv~Av~~LH~---~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~~~tp~~  475 (612)
T KOG0603|consen  405 RRIRSKP-----EFC-SEASQWAAELVSAVDYLHE---QGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERSCDTPAL  475 (612)
T ss_pred             HHHHhcc-----hhH-HHHHHHHHHHHHHHHHHHh---cCeeecCCChhheeecCCCCcEEEEEechhhhCchhhcccch
Confidence            8776543     122 5677799999999999994   569999999999999 58999999999999887654   345


Q ss_pred             cccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHH
Q 006559          492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEME  571 (640)
Q Consensus       492 ~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  571 (640)
                      |..|.|||++       ....+|+++|+||||++||||++|+.||.....+ .+....+...         ..  ....+
T Consensus       476 t~~y~APEvl-------~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~-~ei~~~i~~~---------~~--s~~vS  536 (612)
T KOG0603|consen  476 TLQYVAPEVL-------AIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG-IEIHTRIQMP---------KF--SECVS  536 (612)
T ss_pred             hhcccChhhh-------ccCCCCcchhhHHHHHHHHHHHhCCCccccCCch-HHHHHhhcCC---------cc--ccccC
Confidence            8899999974       3667889999999999999999999999865443 2212111111         00  02233


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          572 EEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       572 ~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      +.   ..+++..|++.||.+||+|.++..
T Consensus       537 ~~---AKdLl~~LL~~dP~~Rl~~~~i~~  562 (612)
T KOG0603|consen  537 DE---AKDLLQQLLQVDPALRLGADEIGA  562 (612)
T ss_pred             HH---HHHHHHHhccCChhhCcChhhhcc
Confidence            44   445566799999999999999853

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.7e-31  Score=248.57  Aligned_cols=249  Identities=19%  Similarity=0.377  Sum_probs=182.1

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc---c-chHHHHHHHHHHhccCCCcccceeEEEEcC--------CeEEE
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER---K-KKREVDEWLRVIGGLRHSNIVSIRAYCNGK--------DELFL  404 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~---~-~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--------~~~~l  404 (640)
                      ..+||+|.||.||+|+.+ .|+.||+|++--.   . ......+|+++|..++|+|++.+.+.|...        ..+|+
T Consensus        22 ~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t~yl  101 (376)
T KOG0669|consen   22 LAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRATFYL  101 (376)
T ss_pred             HHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccceeee
Confidence            357999999999999954 4667887765321   1 223456889999999999999998887542        35999


Q ss_pred             EEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          405 VYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      ||++|+. +|..+|....    ..++...+.+++.++..||.|+|   +..|+|||+|+.|+||+.+|.+||+|||+++.
T Consensus       102 Vf~~ceh-DLaGlLsn~~----vr~sls~Ikk~Mk~Lm~GL~~iH---r~kilHRDmKaaNvLIt~dgilklADFGlar~  173 (376)
T KOG0669|consen  102 VFDFCEH-DLAGLLSNRK----VRFSLSEIKKVMKGLMNGLYYIH---RNKILHRDMKAANVLITKDGILKLADFGLARA  173 (376)
T ss_pred             eHHHhhh-hHHHHhcCcc----ccccHHHHHHHHHHHHHHHHHHH---HhhHHhhcccHhhEEEcCCceEEeeccccccc
Confidence            9999987 8888886542    35788899999999999999999   55699999999999999999999999999977


Q ss_pred             cCCC----------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHHHHHHh-hc
Q 006559          485 FHTP----------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVKWVQMM-GQ  552 (640)
Q Consensus       485 ~~~~----------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~~~~~~-~~  552 (640)
                      +...          .+.|.+|++||.+.      ..+.|+++.|||..||++.||.||.+-+.++.. .....+..+ +.
T Consensus       174 fs~~~n~~kprytnrvvTLwYrppEllL------G~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs  247 (376)
T KOG0669|consen  174 FSTSKNVVKPRYTNRVVTLWYRPPELLL------GDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGS  247 (376)
T ss_pred             eecccccCCCCcccceeeeecCCHHHhh------cccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhcc
Confidence            6421          23488999999874      456778999999999999999999988875322 222222221 11


Q ss_pred             -ccccccccch---------hhccCh---HHHHHHH------HHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          553 -DESAWEVFDF---------ELIMDK---EMEEEMR------ALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       553 -~~~~~~~~d~---------~~~~~~---~~~~~~~------~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       ....|.-+|.         +.....   ..++.++      +.++++-..+..||.+|++..+++.
T Consensus       248 ~tkevWP~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~aln  314 (376)
T KOG0669|consen  248 ITKEVWPNVDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALN  314 (376)
T ss_pred             CCcccCCCcccchHHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhc
Confidence             1222332221         100000   1223333      5666777789999999999888763

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.96  E-value=2.3e-29  Score=271.72  Aligned_cols=198  Identities=21%  Similarity=0.278  Sum_probs=144.4

Q ss_pred             hhccccccCcceEEEEEe-----------------CCCcEEEEEEeccccc--hHH--------------HHHHHHHHhc
Q 006559          337 SAELLGKGCVGATYKVVL-----------------DGGDVVVVKRIRERKK--KRE--------------VDEWLRVIGG  383 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-----------------~~~~~vavK~l~~~~~--~~~--------------~~~e~~~l~~  383 (640)
                      ..++||+|+||+||+|..                 ..+..||||++.....  .++              ...|+..+.+
T Consensus       149 i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~~~l~~  228 (507)
T PLN03224        149 LRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEAYMCAK  228 (507)
T ss_pred             EeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHHHHHHH
Confidence            467899999999999964                 2346799999864311  112              2235566677


Q ss_pred             cCCCcc-----cceeEEEEc--------CCeEEEEEeccCCCCHHHhhccCCCC-------------------CCCCcCH
Q 006559          384 LRHSNI-----VSIRAYCNG--------KDELFLVYDYLPHGSLHSLLHGSRGP-------------------GRMPVDW  431 (640)
Q Consensus       384 l~H~ni-----v~l~~~~~~--------~~~~~lV~Ey~~~gsL~~~l~~~~~~-------------------~~~~l~~  431 (640)
                      ++|.++     ++++++|..        ++..+|||||+++|+|.++++...+.                   ....++|
T Consensus       229 l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~  308 (507)
T PLN03224        229 IKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDI  308 (507)
T ss_pred             hhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCH
Confidence            766654     677888753        35789999999999999998753211                   0123578


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-------ccccccccCCccccCC
Q 006559          432 NKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-------FFINDAYNAPELKFNN  504 (640)
Q Consensus       432 ~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-------~~~~~~y~aPE~~~~~  504 (640)
                      ..+..++.|++.||.|||.   .+|+||||||+|||++.++.+||+|||+++.....       ...++.|+|||.+...
T Consensus       309 ~~~~~i~~ql~~aL~~lH~---~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~l~~~  385 (507)
T PLN03224        309 NVIKGVMRQVLTGLRKLHR---IGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEELVMP  385 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHH---CCeecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeChhhhcCC
Confidence            8889999999999999994   45999999999999999999999999998754321       1236789999986533


Q ss_pred             CCcccc---------------CCCCCccchHHHHHHHHHHHhCCC-CCC
Q 006559          505 NNNYSQ---------------RKFWQRCDVYSFGVVLLEILTGKM-AKG  537 (640)
Q Consensus       505 ~~~~~~---------------~~~~~k~DV~SfGvvl~el~tg~~-p~~  537 (640)
                      ......               .....+.||||+||+++||++|.. |+.
T Consensus       386 ~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~  434 (507)
T PLN03224        386 QSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVA  434 (507)
T ss_pred             CCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCcc
Confidence            211000               012235799999999999999986 654

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=1.7e-29  Score=232.18  Aligned_cols=246  Identities=17%  Similarity=0.288  Sum_probs=186.4

Q ss_pred             hhccccccCcceEEEEE-eCCCcEEEEEEeccccchHHHHHHHHHHhccC-CCcccceeEEEEcC--CeEEEEEeccCCC
Q 006559          337 SAELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLRVIGGLR-HSNIVSIRAYCNGK--DELFLVYDYLPHG  412 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~--~~~~lV~Ey~~~g  412 (640)
                      ..+.+|+|.|+.||.|. ..+.+.++||.++.-+ ++.+.+|+.+|..|+ ||||+++++...++  ....||+||+.+-
T Consensus        42 ivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVk-kkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE~v~n~  120 (338)
T KOG0668|consen   42 IVRKVGRGKYSEVFEGINITNNEKCVIKILKPVK-KKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFEYVNNT  120 (338)
T ss_pred             HHHHHcCccHhhHhcccccCCCceEEEeeechHH-HHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhhhhccc
Confidence            35679999999999998 5677889999998653 456889999999998 99999999998765  4688999999998


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC-CCCeEEccCCcccccCCC---
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ-LGNACISDIGVHQLFHTP---  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~-~~~~kl~DfGl~~~~~~~---  488 (640)
                      +...+..        .++-..+..++.++.+||.|+|+   .+|+|||+||.|+++|. ...++|+|.|+|.++.+.   
T Consensus       121 Dfk~ly~--------tl~d~dIryY~~elLkALdyCHS---~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~eY  189 (338)
T KOG0668|consen  121 DFKQLYP--------TLTDYDIRYYIYELLKALDYCHS---MGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEY  189 (338)
T ss_pred             cHHHHhh--------hhchhhHHHHHHHHHHHHhHHHh---cCcccccCCcceeeechhhceeeeeecchHhhcCCCcee
Confidence            8876654        35666788899999999999995   55999999999999994 568999999999998653   


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc---chHHHHHHhhcccccccccchh
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL---GIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~---~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                        .+.+..|..||++      ...+.|+-.-|+|||||++.+|+..+.||-.++.   .+++.++.++.++....+....
T Consensus       190 nVRVASRyfKGPELL------Vdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~  263 (338)
T KOG0668|consen  190 NVRVASRYFKGPELL------VDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQ  263 (338)
T ss_pred             eeeeehhhcCCchhe------eechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHc
Confidence              2346678999986      3445666778999999999999999999874333   3555556555443221111111


Q ss_pred             hccChHHHH---------------------HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          564 LIMDKEMEE---------------------EMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       564 ~~~~~~~~~---------------------~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      +..++...+                     ...+.+++.-..+..|.++|||++|++.
T Consensus       264 i~Ldp~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~  321 (338)
T KOG0668|consen  264 IDLDPQFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMA  321 (338)
T ss_pred             cCCChhHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccchHHHhc
Confidence            111111111                     0135666667788999999999999864

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.96  E-value=5.3e-30  Score=260.11  Aligned_cols=188  Identities=22%  Similarity=0.376  Sum_probs=158.2

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .++||+|-||+||-|+. ++|+.||||.+.+.    +.+.++..|+.+|++++||.||.+.-.|+..+..+.|||-+.+ 
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~G-  647 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHG-  647 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcc-
Confidence            57899999999999985 57999999999754    3456688999999999999999999999999999999999955 


Q ss_pred             CHHHh-hccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC---CCeEEccCCcccccCC-
Q 006559          413 SLHSL-LHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL---GNACISDIGVHQLFHT-  487 (640)
Q Consensus       413 sL~~~-l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~---~~~kl~DfGl~~~~~~-  487 (640)
                      +..+. |...++    .++...-..++.||..||.|||.   .+|||.||||+||||.+.   -.+||||||.+++... 
T Consensus       648 DMLEMILSsEkg----RL~er~TkFlvtQIL~ALr~LH~---knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEk  720 (888)
T KOG4236|consen  648 DMLEMILSSEKG----RLPERITKFLVTQILVALRYLHF---KNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEK  720 (888)
T ss_pred             hHHHHHHHhhcc----cchHHHHHHHHHHHHHHHHHhhh---cceeeccCCchheeeccCCCCCceeeccccceeecchh
Confidence            55554 443332    47777778899999999999995   459999999999999743   2699999999998764 


Q ss_pred             ----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 006559          488 ----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGE  540 (640)
Q Consensus       488 ----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~  540 (640)
                          ..++|+.|.|||++.       ...|...-|+||.||++|--++|..||.+++
T Consensus       721 sFRrsVVGTPAYLaPEVLr-------nkGyNrSLDMWSVGVIiYVsLSGTFPFNEdE  770 (888)
T KOG4236|consen  721 SFRRSVVGTPAYLAPEVLR-------NKGYNRSLDMWSVGVIIYVSLSGTFPFNEDE  770 (888)
T ss_pred             hhhhhhcCCccccCHHHHh-------hccccccccceeeeEEEEEEecccccCCCcc
Confidence                456799999999864       4556677899999999999999999998543

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=3e-29  Score=259.57  Aligned_cols=185  Identities=24%  Similarity=0.384  Sum_probs=156.7

Q ss_pred             ccccccCcceEEEEE-eCCCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      +.||-|+||+|.+++ .+....+|.|.+++..     ....+..|-.||...+.+.||+|+..|.+++.+|+||||+++|
T Consensus       635 k~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVMdYIPGG  714 (1034)
T KOG0608|consen  635 KTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIPGG  714 (1034)
T ss_pred             eeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEEeccCCc
Confidence            359999999999987 4556789999997652     2234667888999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccccc-------
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF-------  485 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~-------  485 (640)
                      ++-.+|-...     -|.+.....++.++..|+++.|   +.++|||||||+|||||.+|++||.||||+.-+       
T Consensus       715 DmMSLLIrmg-----IFeE~LARFYIAEltcAiesVH---kmGFIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHdsk  786 (1034)
T KOG0608|consen  715 DMMSLLIRMG-----IFEEDLARFYIAELTCAIESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSK  786 (1034)
T ss_pred             cHHHHHHHhc-----cCHHHHHHHHHHHHHHHHHHHH---hccceecccCccceEEccCCceeeeeccccccceeccccc
Confidence            9999887553     4777777888999999999999   778999999999999999999999999996432       


Q ss_pred             --CC---------------------------------------CccccccccCCccccCCCCccccCCCCCccchHHHHH
Q 006559          486 --HT---------------------------------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGV  524 (640)
Q Consensus       486 --~~---------------------------------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGv  524 (640)
                        ..                                       ..++|..|+|||++       ....++..+|.||.||
T Consensus       787 YYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl-------~r~g~~q~cdwws~gv  859 (1034)
T KOG0608|consen  787 YYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVL-------ARTGYTQLCDWWSVGV  859 (1034)
T ss_pred             cccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHh-------cccCccccchhhHhhH
Confidence              10                                       01347789999975       4456778899999999


Q ss_pred             HHHHHHhCCCCCCC
Q 006559          525 VLLEILTGKMAKGD  538 (640)
Q Consensus       525 vl~el~tg~~p~~~  538 (640)
                      |||||+.|+.||-.
T Consensus       860 il~em~~g~~pf~~  873 (1034)
T KOG0608|consen  860 ILYEMLVGQPPFLA  873 (1034)
T ss_pred             HHHHHhhCCCCccC
Confidence            99999999999974

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.96  E-value=2.2e-29  Score=248.35  Aligned_cols=249  Identities=20%  Similarity=0.264  Sum_probs=184.5

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc-chHHHHHHHHHHhccCC--C----cccceeEEEEcCCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-KKREVDEWLRVIGGLRH--S----NIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-~~~~~~~e~~~l~~l~H--~----niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ...+|+|.||.|-.+... .+..||||+++.-. .++...-|+++++++.+  |    -+|.+.++|.-.++.+||+|.+
T Consensus        94 ~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghiCivfell  173 (415)
T KOG0671|consen   94 VDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHICIVFELL  173 (415)
T ss_pred             hhhhcCCcccceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCceEEEEecc
Confidence            356999999999998843 46889999998763 34556678999998843  2    2688889998899999999987


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC-------------------
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ-------------------  470 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~-------------------  470 (640)
                       +-|+.+++..+.   ..+++...+..|+.|++++++|||   +.+++|-||||+|||+-+                   
T Consensus       174 -G~S~~dFlk~N~---y~~fpi~~ir~m~~QL~~sv~fLh---~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~  246 (415)
T KOG0671|consen  174 -GLSTFDFLKENN---YIPFPIDHIRHMGYQLLESVAFLH---DLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPL  246 (415)
T ss_pred             -ChhHHHHhccCC---ccccchHHHHHHHHHHHHHHHHHH---hcceeecCCChheEEEeccceEEEeccCCccceeccC
Confidence             459999998753   347888999999999999999999   455999999999999842                   


Q ss_pred             -CCCeEEccCCcccccCCC---ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHH
Q 006559          471 -LGNACISDIGVHQLFHTP---FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVK  545 (640)
Q Consensus       471 -~~~~kl~DfGl~~~~~~~---~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~  545 (640)
                       +..+||+|||-+.+....   .+.|..|+|||++++       ..++.++||||+||||+|++||...|...+. .-..
T Consensus       247 ks~~I~vIDFGsAtf~~e~hs~iVsTRHYRAPEViLg-------LGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLa  319 (415)
T KOG0671|consen  247 KSTAIKVIDFGSATFDHEHHSTIVSTRHYRAPEVILG-------LGWSQPCDVWSIGCILVELYTGETLFQTHENLEHLA  319 (415)
T ss_pred             CCcceEEEecCCcceeccCcceeeeccccCCchheec-------cCcCCccCceeeeeEEEEeeccceecccCCcHHHHH
Confidence             235799999999876543   356999999998644       4566789999999999999999998875431 1111


Q ss_pred             HHHHhhcc-cc--c-------------------------ccccchhhccC---hHHHHHHHHHHHHHHHccCCCCCCCCC
Q 006559          546 WVQMMGQD-ES--A-------------------------WEVFDFELIMD---KEMEEEMRALLQVALLCLAPLPKDRPN  594 (640)
Q Consensus       546 ~~~~~~~~-~~--~-------------------------~~~~d~~~~~~---~~~~~~~~~l~~l~~~Cl~~~P~~RPs  594 (640)
                      .++.+... +.  +                         ..+.++.....   ...+.+..++.+++..++..||.+|+|
T Consensus       320 MMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiT  399 (415)
T KOG0671|consen  320 MMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRIT  399 (415)
T ss_pred             HHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCcccccc
Confidence            22222111 00  0                         00111110000   012355678999999999999999999


Q ss_pred             HHHHHH
Q 006559          595 MSIVHR  600 (640)
Q Consensus       595 ~~~v~~  600 (640)
                      ++|++.
T Consensus       400 l~EAL~  405 (415)
T KOG0671|consen  400 LREALS  405 (415)
T ss_pred             HHHHhc
Confidence            999864

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.95  E-value=6.6e-28  Score=227.12  Aligned_cols=252  Identities=20%  Similarity=0.287  Sum_probs=182.5

Q ss_pred             hhccccccCcceEEEEEeCC-CcEEEEEEeccc-cchHHHHHHHHHHhcc-CCCcccceeEE-EEcCCeEEEEEeccCCC
Q 006559          337 SAELLGKGCVGATYKVVLDG-GDVVVVKRIRER-KKKREVDEWLRVIGGL-RHSNIVSIRAY-CNGKDELFLVYDYLPHG  412 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~-~~~~~~~~e~~~l~~l-~H~niv~l~~~-~~~~~~~~lV~Ey~~~g  412 (640)
                      ..+.+|+|.||.+-++.++. .+.+|+|.+... ...++|.+|..---.| .|.||+.-++. |+..+.+++++||+|.|
T Consensus        28 I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE~aP~g  107 (378)
T KOG1345|consen   28 INKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQEFAPRG  107 (378)
T ss_pred             HHHHhcccceeeEEeeeccCCceEEEeeccCcchhhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeeccCccc
Confidence            45679999999999999765 567889988765 4567788876532223 58999987654 66778899999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE-C-CCCCeEEccCCcccccCCCc-
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV-D-QLGNACISDIGVHQLFHTPF-  489 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl-~-~~~~~kl~DfGl~~~~~~~~-  489 (640)
                      +|.+-+...+      +.+....+++.|++.|++|||+.+   +||||||.+|||+ + +..++||||||+.+..+... 
T Consensus       108 dL~snv~~~G------igE~~~K~v~~ql~SAi~fMHskn---lVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~tV~  178 (378)
T KOG1345|consen  108 DLRSNVEAAG------IGEANTKKVFAQLLSAIEFMHSKN---LVHRDLKAENILIFDADFYRVKLCDFGLTRKVGTTVK  178 (378)
T ss_pred             hhhhhcCccc------ccHHHHHHHHHHHHHHHHHhhccc---hhhcccccceEEEecCCccEEEeeecccccccCceeh
Confidence            9998886543      667788899999999999999655   9999999999998 3 34589999999988766432 


Q ss_pred             --cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC---cchHHHHHHhhcccccccccchhh
Q 006559          490 --FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGE---LGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       490 --~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                        -.+..|.+||+...-++  ......+.+|||.||++++.++||++||+...   ....+|.+...+...         
T Consensus       179 ~~~~~~~y~~pe~~~~~~n--e~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~rk~~---------  247 (378)
T KOG1345|consen  179 YLEYVNNYHAPELCDTVVN--EKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKRKNP---------  247 (378)
T ss_pred             hhhhhcccCCcHHHhhccc--cceEecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcccCc---------
Confidence              12557889997644322  12345678999999999999999999998432   234445444332211         


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ..+.........++++-.+-+.++|++|-...++.++......+
T Consensus       248 ~~P~~F~~fs~~a~r~Fkk~lt~~~~drcki~~~kk~rk~~w~E  291 (378)
T KOG1345|consen  248 ALPKKFNPFSEKALRLFKKSLTPRFKDRCKIWTAKKMRKCLWKE  291 (378)
T ss_pred             cCchhhcccCHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHH
Confidence            01111112223445555667899999998888887777665544

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=5.6e-29  Score=252.06  Aligned_cols=185  Identities=18%  Similarity=0.291  Sum_probs=160.9

Q ss_pred             cccccCcceEEEEEeCCCc-EEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          340 LLGKGCVGATYKVVLDGGD-VVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~~~~-~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .||-||||.|-+++..+.. .+|+|.+++.     +..+.+..|-++|...+.|.||+++-.|.+....|+.||-|-+|.
T Consensus       427 TLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLmEaClGGE  506 (732)
T KOG0614|consen  427 TLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLMEACLGGE  506 (732)
T ss_pred             hcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhHHhhcCch
Confidence            5999999999999876654 3888888765     234456678889999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----C
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----P  488 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----~  488 (640)
                      |...|+...     .|+......++..+.+|++|||   ..+||.|||||+|.+||.+|.+||.|||.|+....     .
T Consensus       507 lWTiLrdRg-----~Fdd~tarF~~acv~EAfeYLH---~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~KTwT  578 (732)
T KOG0614|consen  507 LWTILRDRG-----SFDDYTARFYVACVLEAFEYLH---RKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGRKTWT  578 (732)
T ss_pred             hhhhhhhcC-----CcccchhhhhHHHHHHHHHHHH---hcCceeccCChhheeeccCCceEEeehhhHHHhccCCceee
Confidence            999998654     5788888889999999999999   45599999999999999999999999999998764     4


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG  539 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~  539 (640)
                      +++|+.|.|||++.       ....+..+|.||+|+++|||+||++||...
T Consensus       579 FcGTpEYVAPEIIL-------nKGHD~avDyWaLGIli~ELL~G~pPFs~~  622 (732)
T KOG0614|consen  579 FCGTPEYVAPEIIL-------NKGHDRAVDYWALGILIYELLTGSPPFSGV  622 (732)
T ss_pred             ecCCcccccchhhh-------ccCcchhhHHHHHHHHHHHHHcCCCCCCCC
Confidence            67899999999764       345567899999999999999999999854

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.95  E-value=1.9e-28  Score=262.44  Aligned_cols=238  Identities=24%  Similarity=0.296  Sum_probs=172.3

Q ss_pred             HHhhccccccCcce-EEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          335 KSSAELLGKGCVGA-TYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       335 ~~~~~~iG~G~fg~-Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ....+++|.|+-|+ ||+|.+. |+.||||++-.... .-..+|+..|+.- +|||||++++.=.+....||+.|.|.. 
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~ye-~R~VAVKrll~e~~-~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~~-  587 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVYE-GREVAVKRLLEEFF-DFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCAC-  587 (903)
T ss_pred             eccHHHcccCCCCcEEEEEeeC-CceehHHHHhhHhH-HHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhhh-
Confidence            35578899999985 7999986 57999999865422 2345678777765 599999999988888999999999965 


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC---C--CCeEEccCCcccccCC
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ---L--GNACISDIGVHQLFHT  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~---~--~~~kl~DfGl~~~~~~  487 (640)
                      +|.+++.... .......-...+.+..|++.||+|||+.   +||||||||.||||+.   +  .+++|+|||+++.+..
T Consensus       588 sL~dlie~~~-~d~~~~~~i~~~~~l~q~~~GlaHLHsl---~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~  663 (903)
T KOG1027|consen  588 SLQDLIESSG-LDVEMQSDIDPISVLSQIASGLAHLHSL---KIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAG  663 (903)
T ss_pred             hHHHHHhccc-cchhhcccccHHHHHHHHHHHHHHHHhc---ccccccCCCceEEEEccCCCcceeEEecccccccccCC
Confidence            9999998641 1111111134466788999999999964   5999999999999975   3  5799999999988753


Q ss_pred             ---------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhC-CCCCCCCCcchHHHHHHhhcccccc
Q 006559          488 ---------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG-KMAKGDGELGIVKWVQMMGQDESAW  557 (640)
Q Consensus       488 ---------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg-~~p~~~~~~~~~~~~~~~~~~~~~~  557 (640)
                               ...+|.+|+|||++...       .-+.++||+|+||++|..+|| ++||++.-...+-.+.   ..    
T Consensus       664 ~~sS~~r~s~~sGt~GW~APE~L~~~-------~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~~NIl~---~~----  729 (903)
T KOG1027|consen  664 GKSSFSRLSGGSGTSGWQAPEQLRED-------RKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQANILT---GN----  729 (903)
T ss_pred             CcchhhcccCCCCcccccCHHHHhcc-------ccCcccchhhcCceEEEEecCCccCCCchHHhhhhhhc---Cc----
Confidence                     23468899999986443       234589999999999999995 9999853211110000   00    


Q ss_pred             cccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 006559          558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVH  599 (640)
Q Consensus       558 ~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~  599 (640)
                        .  .+..-....++  +..+++.++++++|..||++.+|+
T Consensus       730 --~--~L~~L~~~~d~--eA~dLI~~ml~~dP~~RPsa~~VL  765 (903)
T KOG1027|consen  730 --Y--TLVHLEPLPDC--EAKDLISRMLNPDPQLRPSATDVL  765 (903)
T ss_pred             --c--ceeeeccCchH--HHHHHHHHhcCCCcccCCCHHHHh
Confidence              0  00000111122  566777889999999999999997

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.95  E-value=1.6e-26  Score=223.61  Aligned_cols=203  Identities=27%  Similarity=0.465  Sum_probs=173.9

Q ss_pred             ccccCcceEEEEEeCC-CcEEEEEEeccccc---hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHH
Q 006559          341 LGKGCVGATYKVVLDG-GDVVVVKRIRERKK---KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       341 iG~G~fg~Vy~~~~~~-~~~vavK~l~~~~~---~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~  416 (640)
                      ||+|.+|.||++...+ ++.+++|.+.....   .+.+.+|++.++.++|++|+++++++......++++||+++++|.+
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~   80 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKD   80 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHH
Confidence            6899999999999764 88999999987644   3678899999999999999999999999899999999999999999


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC-CCCeEEccCCcccccCCC------c
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ-LGNACISDIGVHQLFHTP------F  489 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~-~~~~kl~DfGl~~~~~~~------~  489 (640)
                      ++....    ..+++..+..++.+++++++|||+   .+++|+||+|.||+++. ++.++|+|||.+......      .
T Consensus        81 ~~~~~~----~~~~~~~~~~~~~~l~~~l~~lh~---~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~  153 (215)
T cd00180          81 LLKENE----GKLSEDEILRILLQILEGLEYLHS---NGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTI  153 (215)
T ss_pred             HHHhcc----CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchhhcc
Confidence            987542    247889999999999999999995   46999999999999999 899999999998766433      3


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChH
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKE  569 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  569 (640)
                      .....|++||.....      ...+.+.|+|++|+++++|                                        
T Consensus       154 ~~~~~~~~pe~~~~~------~~~~~~~D~~~lg~~~~~l----------------------------------------  187 (215)
T cd00180         154 VGTPAYMAPEVLLGK------GYYSEKSDIWSLGVILYEL----------------------------------------  187 (215)
T ss_pred             cCCCCccChhHhccc------CCCCchhhhHHHHHHHHHH----------------------------------------
Confidence            346789999964221      2567889999999999998                                        


Q ss_pred             HHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          570 MEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       570 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                           ..+.+++..|++.+|++||++.++++.
T Consensus       188 -----~~~~~~l~~~l~~~p~~R~~~~~l~~~  214 (215)
T cd00180         188 -----PELKDLIRKMLQKDPEKRPSAKEILEH  214 (215)
T ss_pred             -----HHHHHHHHHHhhCCcccCcCHHHHhhC
Confidence                 346667788999999999999998764

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=6.8e-29  Score=233.61  Aligned_cols=185  Identities=21%  Similarity=0.400  Sum_probs=153.7

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcC-----CeEEEEEe
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGK-----DELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~-----~~~~lV~E  407 (640)
                      .+-||-|+||+||-+.. ++|+.||.|++..-    ...+.+-+|+.++...+|.|++..++.....     .++|.|.|
T Consensus        58 DRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~TE  137 (449)
T KOG0664|consen   58 DRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVLTE  137 (449)
T ss_pred             CCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHHHH
Confidence            34699999999998884 67899999998654    2346677889999999999999998887654     36889999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      .|.. +|+.++-..     .+++-..+.-+..||.+||.|||+.   +|.||||||.|.|++.+-..||||||+++..+.
T Consensus       138 LmQS-DLHKIIVSP-----Q~Ls~DHvKVFlYQILRGLKYLHsA---~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~  208 (449)
T KOG0664|consen  138 LMQS-DLHKIIVSP-----QALTPDHVKVFVYQILRGLKYLHTA---NILHRDIKPGNLLVNSNCILKICDFGLARTWDQ  208 (449)
T ss_pred             HHHh-hhhheeccC-----CCCCcchhhhhHHHHHhhhHHHhhc---chhhccCCCccEEeccCceEEecccccccccch
Confidence            9964 888887643     2577777788899999999999954   599999999999999999999999999998753


Q ss_pred             C-------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCC
Q 006559          488 P-------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKG  537 (640)
Q Consensus       488 ~-------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~  537 (640)
                      .       .+.|..|+|||++++      .+.|+.+.||||.||++.|++-++..|.
T Consensus       209 d~~~hMTqEVVTQYYRAPEiLMG------aRhYs~AvDiWSVGCIFaELLgRrILFQ  259 (449)
T KOG0664|consen  209 RDRLNMTHEVVTQYYRAPELLMG------ARRYTGAVDIWSVGCIFAELLQRKILFQ  259 (449)
T ss_pred             hhhhhhHHHHHHHHhccHHHhhc------chhhcCccceehhhHHHHHHHhhhhhhh
Confidence            2       344788999999754      4567789999999999999998887776

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=2.5e-27  Score=228.79  Aligned_cols=186  Identities=19%  Similarity=0.309  Sum_probs=155.2

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccccc-----hHHHHHHHHHHhc-cCCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERKK-----KREVDEWLRVIGG-LRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~-----~~~~~~e~~~l~~-l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ...+||+|+|++|..+++. ..+.+|+|++++...     -.-++.|-.+..+ -+||.+|.+..+|+.+..+++|.||+
T Consensus       254 ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlffvieyv  333 (593)
T KOG0695|consen  254 LLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFFVIEYV  333 (593)
T ss_pred             eeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEEEEEEe
Confidence            3568999999999999864 577899999876511     1123344444443 47999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccccc----
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF----  485 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~----  485 (640)
                      ++|+|.-+.+.++     .++.+....+..+|+.||.|||   +.+||.||||..|||+|..|.+|+.|+|+.+.-    
T Consensus       334 ~ggdlmfhmqrqr-----klpeeharfys~ei~lal~flh---~rgiiyrdlkldnvlldaeghikltdygmcke~l~~g  405 (593)
T KOG0695|consen  334 NGGDLMFHMQRQR-----KLPEEHARFYSAEICLALNFLH---ERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLGPG  405 (593)
T ss_pred             cCcceeeehhhhh-----cCcHHHhhhhhHHHHHHHHHHh---hcCeeeeeccccceEEccCCceeecccchhhcCCCCC
Confidence            9999987777654     5888888889999999999999   566999999999999999999999999998763    


Q ss_pred             --CCCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCC
Q 006559          486 --HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKG  537 (640)
Q Consensus       486 --~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~  537 (640)
                        .+.+++|+.|+|||++.+       ..|.-.+|.|++||+++||+.|+.||+
T Consensus       406 d~tstfcgtpnyiapeilrg-------eeygfsvdwwalgvlmfemmagrspfd  452 (593)
T KOG0695|consen  406 DTTSTFCGTPNYIAPEILRG-------EEYGFSVDWWALGVLMFEMMAGRSPFD  452 (593)
T ss_pred             cccccccCCCcccchhhhcc-------cccCceehHHHHHHHHHHHHcCCCCcc
Confidence              345788999999998654       445567999999999999999999998

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=5e-26  Score=230.38  Aligned_cols=127  Identities=15%  Similarity=0.235  Sum_probs=103.6

Q ss_pred             hhccccccCcceEEEEE-eCCCcEEEEEEeccccc-hHHHHHHHHHHhccC-----C---CcccceeEEEEc----CCeE
Q 006559          337 SAELLGKGCVGATYKVV-LDGGDVVVVKRIRERKK-KREVDEWLRVIGGLR-----H---SNIVSIRAYCNG----KDEL  402 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~~~-~~~~~~e~~~l~~l~-----H---~niv~l~~~~~~----~~~~  402 (640)
                      ..++||.|.|++||++. ..+.+.||+|+.+..+. .+....||++|++++     |   ..||+|++.|..    ..++
T Consensus        82 v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpNG~HV  161 (590)
T KOG1290|consen   82 VQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPNGQHV  161 (590)
T ss_pred             EEEeccccccceeEEEeeccCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCCCcEE
Confidence            35689999999999998 45677899999987643 455678899998774     3   369999999975    3589


Q ss_pred             EEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC
Q 006559          403 FLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD  469 (640)
Q Consensus       403 ~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~  469 (640)
                      +||+||+ +-+|..+|....-   .-++...+.+|+.||+.||.|||..|  +|||-||||+|||+.
T Consensus       162 CMVfEvL-GdnLLklI~~s~Y---rGlpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvLl~  222 (590)
T KOG1290|consen  162 CMVFEVL-GDNLLKLIKYSNY---RGLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVLLC  222 (590)
T ss_pred             EEEehhh-hhHHHHHHHHhCC---CCCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceeeee
Confidence            9999998 5588888875431   23677889999999999999999855  899999999999995

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.94  E-value=1e-26  Score=224.41  Aligned_cols=241  Identities=22%  Similarity=0.312  Sum_probs=176.4

Q ss_pred             cccccCcceEEEEE-eCCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcC------CeEEEEEec
Q 006559          340 LLGKGCVGATYKVV-LDGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGK------DELFLVYDY  408 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------~~~~lV~Ey  408 (640)
                      .+|.|.- .|.-+. .-.++.||+|++...    ...+...+|..++..++|+||++++.+|...      .+.|+||||
T Consensus        24 p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y~v~e~  102 (369)
T KOG0665|consen   24 PIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVYLVMEL  102 (369)
T ss_pred             ccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHHHHHHh
Confidence            3566655 333333 223678999987543    3345567788999999999999999998653      368999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC--
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH--  486 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~--  486 (640)
                      |. .+|...++-       .++......|..|++.|++|||   ..+|+||||||+||++..+..+||.|||+++.-+  
T Consensus       103 m~-~nl~~vi~~-------elDH~tis~i~yq~~~~ik~lh---s~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~  171 (369)
T KOG0665|consen  103 MD-ANLCQVILM-------ELDHETISYILYQMLCGIKHLH---SAGIIHRDLKPSNIVVNSDCTLKILDFGLARTEDTD  171 (369)
T ss_pred             hh-hHHHHHHHH-------hcchHHHHHHHHHHHHHHHHHH---hcceeecccCcccceecchhheeeccchhhcccCcc
Confidence            95 589888872       3677888999999999999999   4569999999999999999999999999998754  


Q ss_pred             ---CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccch-
Q 006559          487 ---TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF-  562 (640)
Q Consensus       487 ---~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~-  562 (640)
                         ++++.+..|.|||++.+.       .+.+.+||||.||++.||++|+.-|. ++..+.+|-+....-+.....+-. 
T Consensus       172 ~~mtpyVvtRyyrapevil~~-------~~ke~vdiwSvGci~gEli~~~Vlf~-g~d~idQ~~ki~~~lgtpd~~F~~q  243 (369)
T KOG0665|consen  172 FMMTPYVVTRYYRAPEVILGM-------GYKENVDIWSVGCIMGELILGTVLFP-GKDHIDQWNKIIEQLGTPDPSFMKQ  243 (369)
T ss_pred             cccCchhheeeccCchheecc-------CCcccchhhhhhhHHHHHhhceEEec-CchHHHHHHHHHHHhcCCCHHHHHH
Confidence               456678899999987533       26689999999999999999998876 334556665544332211110000 


Q ss_pred             ---------------------hhccC-------hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          563 ---------------------ELIMD-------KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       563 ---------------------~~~~~-------~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                                           +...+       +...-....+.+++.+++-.+|++|-+++++++
T Consensus       244 L~~~~r~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~  309 (369)
T KOG0665|consen  244 LQPTVRNYVENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALR  309 (369)
T ss_pred             hhHHHHHHhhcChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhc
Confidence                                 00000       000112234667888899999999999999875

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.93  E-value=4.6e-25  Score=216.62  Aligned_cols=188  Identities=26%  Similarity=0.451  Sum_probs=161.7

Q ss_pred             hccccccCcceEEEEEeCC-CcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLDG-GDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|++|.||++...+ +..+++|.+....   ..+.+..|++.+++++|+|++++++++...+..++++||+++++
T Consensus         4 ~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~   83 (225)
T smart00221        4 GKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCEGGD   83 (225)
T ss_pred             eeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccCCCC
Confidence            4679999999999999765 8889999998653   45677889999999999999999999998899999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-----
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-----  488 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-----  488 (640)
                      |.+++.....    .+++.....++.+++.++.|||.   .+++|+|++++||+++.++.++|+|||.+......     
T Consensus        84 L~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~  156 (225)
T smart00221       84 LFDYLRKKGG----KLSEEEARFYLRQILEALEYLHS---LGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAALL  156 (225)
T ss_pred             HHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCcccccc
Confidence            9999976531    17889999999999999999995   46999999999999999999999999998776432     


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCC
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD  538 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~  538 (640)
                        ...+..|++||...      ....++.++|||+||++++||++|+.||..
T Consensus       157 ~~~~~~~~~~~pe~~~------~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      157 KTVKGTPFYLAPEVLL------GGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             cceeccCCcCCHhHhc------CCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence              23466799999642      445666799999999999999999999954

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.93  E-value=1.9e-26  Score=237.26  Aligned_cols=186  Identities=19%  Similarity=0.270  Sum_probs=155.3

Q ss_pred             hccccccCcceEEEEEeCC-CcEEEEEEeccccch----------HHHHHHHHHHhccC---CCcccceeEEEEcCCeEE
Q 006559          338 AELLGKGCVGATYKVVLDG-GDVVVVKRIRERKKK----------REVDEWLRVIGGLR---HSNIVSIRAYCNGKDELF  403 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~~~~----------~~~~~e~~~l~~l~---H~niv~l~~~~~~~~~~~  403 (640)
                      -..+|+|+||.|+.|.++. ..+|+||.+.+.+.-          -.+-.|+.+|..++   |+||++++++|++.+.+|
T Consensus       566 lq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEddd~yy  645 (772)
T KOG1152|consen  566 LQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFEDDDYYY  645 (772)
T ss_pred             eeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeecCCeeE
Confidence            4579999999999999754 567899988654211          12346889999887   999999999999999999


Q ss_pred             EEEecc-CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcc
Q 006559          404 LVYDYL-PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVH  482 (640)
Q Consensus       404 lV~Ey~-~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~  482 (640)
                      |+||-. ++-+|.+++..+.     .+++.+...|+.||+.|++|||++   +|||||||-+||.+|.+|-+||+|||-+
T Consensus       646 l~te~hg~gIDLFd~IE~kp-----~m~E~eAk~IFkQV~agi~hlh~~---~ivhrdikdenvivd~~g~~klidfgsa  717 (772)
T KOG1152|consen  646 LETEVHGEGIDLFDFIEFKP-----RMDEPEAKLIFKQVVAGIKHLHDQ---GIVHRDIKDENVIVDSNGFVKLIDFGSA  717 (772)
T ss_pred             EEecCCCCCcchhhhhhccC-----ccchHHHHHHHHHHHhcccccccc---CceecccccccEEEecCCeEEEeeccch
Confidence            999975 4559999997654     478888899999999999999954   5999999999999999999999999998


Q ss_pred             cccCC----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCC
Q 006559          483 QLFHT----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKG  537 (640)
Q Consensus       483 ~~~~~----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~  537 (640)
                      .....    .+.+|..|.|||++.+.++.      ...-|||++|++||-++....||.
T Consensus       718 a~~ksgpfd~f~gtv~~aapevl~g~~y~------gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  718 AYTKSGPFDVFVGTVDYAAPEVLGGEKYL------GKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             hhhcCCCcceeeeeccccchhhhCCCccC------CCcchhhhhhheeeEEEeccCCCc
Confidence            87654    35679999999988665433      346799999999999999888874

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.93  E-value=8.8e-27  Score=243.50  Aligned_cols=241  Identities=21%  Similarity=0.336  Sum_probs=187.0

Q ss_pred             hccccccCcceEEEEE-eCCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVV-LDGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ...+|.|.||.|||++ .+.++.+|||.++-.  ..-.-+.+|+-+++.-+|||||.++|.+...+..|++||||.+|+|
T Consensus        20 lqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicMEycgggsl   99 (829)
T KOG0576|consen   20 LQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICMEYCGGGSL   99 (829)
T ss_pred             eeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEEecCCCcc
Confidence            4579999999999999 567889999998755  3345567788888999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC------CC
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH------TP  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~------~~  488 (640)
                      ++.-+...     +++..++-.++++..+||+|||+..   =+|||||-.|||+.+.|.+|++|||.+..++      ..
T Consensus       100 Qdiy~~Tg-----plselqiayvcRetl~gl~ylhs~g---k~hRdiKGanilltd~gDvklaDfgvsaqitati~Krks  171 (829)
T KOG0576|consen  100 QDIYHVTG-----PLSELQIAYVCRETLQGLKYLHSQG---KIHRDIKGANILLTDEGDVKLADFGVSAQITATIAKRKS  171 (829)
T ss_pred             cceeeecc-----cchhHHHHHHHhhhhccchhhhcCC---cccccccccceeecccCceeecccCchhhhhhhhhhhhc
Confidence            99888654     6888888899999999999999654   6799999999999999999999999976654      25


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      +.+|+.|||||+...    .....|..++|||+.|+...|+-.-++|..+-.  -.+-...+..     .-+++.-..++
T Consensus       172 fiGtpywmapEvaav----erkggynqlcdiwa~gitAiel~eLqpplfdlh--pmr~l~LmTk-----S~~qpp~lkDk  240 (829)
T KOG0576|consen  172 FIGTPYWMAPEVAAV----ERKGGYNQLCDIWALGITAIELGELQPPLFDLH--PMRALFLMTK-----SGFQPPTLKDK  240 (829)
T ss_pred             ccCCccccchhHHHH----HhcccccccccccccccchhhhhhcCCcccccc--hHHHHHHhhc-----cCCCCCcccCC
Confidence            678999999997532    234578899999999999999988887743211  1111111111     11222222222


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVH  599 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~  599 (640)
                        .....-+.+++..|+-.+|++||++...+
T Consensus       241 --~kws~~fh~fvK~altknpKkRptaeklL  269 (829)
T KOG0576|consen  241 --TKWSEFFHNFVKGALTKNPKKRPTAEKLL  269 (829)
T ss_pred             --ccchHHHHHHHHHHhcCCCccCCChhhhe
Confidence              23344566677779999999999987543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.92  E-value=5.6e-26  Score=213.95  Aligned_cols=248  Identities=23%  Similarity=0.382  Sum_probs=183.0

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      ..+|.+...|+.|+|++++..+| +|++...    ...++|.+|.-.++-+.||||..++|.|..+..+.++..|||.|+
T Consensus       195 ~tkl~e~hsgelwrgrwqgndiv-akil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gs  273 (448)
T KOG0195|consen  195 ITKLAESHSGELWRGRWQGNDIV-AKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGS  273 (448)
T ss_pred             hhhhccCCCcccccccccCcchh-hhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchH
Confidence            34588889999999999876654 5666543    345789999988888999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-Ccccc
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-PFFIN  492 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-~~~~~  492 (640)
                      |+..|++..+   ...+..+..+++.++|+|++|||+.. +-|..--|.+..|++|++.+++|+--..-..++. .....
T Consensus       274 lynvlhe~t~---vvvd~sqav~faldiargmaflhsle-p~ipr~~lns~hvmidedltarismad~kfsfqe~gr~y~  349 (448)
T KOG0195|consen  274 LYNVLHEQTS---VVVDHSQAVRFALDIARGMAFLHSLE-PMIPRFYLNSKHVMIDEDLTARISMADTKFSFQEVGRAYS  349 (448)
T ss_pred             HHHHHhcCcc---EEEecchHHHHHHHHHhhHHHHhhcc-hhhhhhhcccceEEecchhhhheecccceeeeeccccccC
Confidence            9999997652   35677889999999999999999874 4466678999999999999988753111111221 22346


Q ss_pred             ccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHH
Q 006559          493 DAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEE  572 (640)
Q Consensus       493 ~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  572 (640)
                      +.|++||.+...++...    -..+|+|||++++||+.|+..||.+-.....- ++..      .+-.  +...++....
T Consensus       350 pawmspealqrkped~n----~raadmwsfaillwel~trevpfadlspmecg-mkia------legl--rv~ippgis~  416 (448)
T KOG0195|consen  350 PAWMSPEALQRKPEDLN----IRAADMWSFAILLWELNTREVPFADLSPMECG-MKIA------LEGL--RVHIPPGISR  416 (448)
T ss_pred             cccCCHHHHhcCchhcc----hhhhhHHHHHHHHHHhhccccccccCCchhhh-hhhh------hccc--cccCCCCccH
Confidence            78999998766655432    24689999999999999999999742110000 0000      0001  1122333344


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          573 EMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       573 ~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                      -+.++   +.-|...||.+||.+..|+-.|+++.
T Consensus       417 hm~kl---m~icmnedpgkrpkfdmivpilekm~  447 (448)
T KOG0195|consen  417 HMNKL---MNICMNEDPGKRPKFDMIVPILEKMI  447 (448)
T ss_pred             HHHHH---HHHHhcCCCCcCCCcceehhhHHHhc
Confidence            44444   44599999999999999999999875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.92  E-value=9e-26  Score=262.27  Aligned_cols=189  Identities=17%  Similarity=0.173  Sum_probs=135.0

Q ss_pred             hccCC-CcccceeEEE-------EcCCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCC
Q 006559          382 GGLRH-SNIVSIRAYC-------NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNK  453 (640)
Q Consensus       382 ~~l~H-~niv~l~~~~-------~~~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~  453 (640)
                      +.++| +||++++++|       ...+.++.++||+ .++|+++|....    ..+++..++.++.||++||+|||+   
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~al~~lH~---   98 (793)
T PLN00181         27 KSLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNPD----RSVDAFECFHVFRQIVEIVNAAHS---   98 (793)
T ss_pred             chhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhccc----ccccHHHHHHHHHHHHHHHHHHHh---
Confidence            34566 6888888887       2334678889988 559999997432    258899999999999999999994   


Q ss_pred             CCceecCCCCCCeEEC-------------------CCCCeEEccCCcccccCC----------------------Ccccc
Q 006559          454 AHLFHGHLSSSNIVVD-------------------QLGNACISDIGVHQLFHT----------------------PFFIN  492 (640)
Q Consensus       454 ~~ivHrdlk~~NILl~-------------------~~~~~kl~DfGl~~~~~~----------------------~~~~~  492 (640)
                      .+|+||||||+||||+                   .++.+|++|||+++....                      ...+|
T Consensus        99 ~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  178 (793)
T PLN00181         99 QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEM  178 (793)
T ss_pred             CCeeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCC
Confidence            5599999999999994                   456678888888764211                      02346


Q ss_pred             ccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHH
Q 006559          493 DAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEE  572 (640)
Q Consensus       493 ~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  572 (640)
                      ..|+|||++.       ...++.++|||||||+||||++|..|+.........+..         ....      +....
T Consensus       179 ~~Y~APE~~~-------~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~~~~~~~~---------~~~~------~~~~~  236 (793)
T PLN00181        179 SWYTSPEEDN-------GSSSNCASDVYRLGVLLFELFCPVSSREEKSRTMSSLRH---------RVLP------PQILL  236 (793)
T ss_pred             cceEChhhhc-------cCCCCchhhhhhHHHHHHHHhhCCCchhhHHHHHHHHHH---------hhcC------hhhhh
Confidence            7799999753       345678999999999999999998887532111111100         0011      11111


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          573 EMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       573 ~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ...+...++..||+++|.+||+|.|+++
T Consensus       237 ~~~~~~~~~~~~L~~~P~~Rps~~eil~  264 (793)
T PLN00181        237 NWPKEASFCLWLLHPEPSCRPSMSELLQ  264 (793)
T ss_pred             cCHHHHHHHHHhCCCChhhCcChHHHhh
Confidence            2234557778899999999999999964

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.92  E-value=2.4e-25  Score=226.36  Aligned_cols=186  Identities=22%  Similarity=0.308  Sum_probs=153.3

Q ss_pred             cccccCcceEEEEEe-CCCcEEEEEEeccc-cchHHHHHHHHHHhccC------CCcccceeEEEEcCCeEEEEEeccCC
Q 006559          340 LLGKGCVGATYKVVL-DGGDVVVVKRIRER-KKKREVDEWLRVIGGLR------HSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~------H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ..|+|-|++|..|.. ..|..||||+|+.. ...+.-..|+++|++|+      -.|+++|+-.|....++|||+|-+. 
T Consensus       439 ~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHLClVFE~Ls-  517 (752)
T KOG0670|consen  439 YTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHLCLVFEPLS-  517 (752)
T ss_pred             ccccceeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcceeEEEehhhh-
Confidence            479999999999984 34779999999876 33455567899999985      3478999999999999999999774 


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC-CCeEEccCCcccccCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL-GNACISDIGVHQLFHT---  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~-~~~kl~DfGl~~~~~~---  487 (640)
                      -+|.++|+..+..  .-|....+..++.|+..||.+|-   ..+|+|.||||.|||+++. ..+||||||-|.....   
T Consensus       518 lNLRevLKKyG~n--vGL~ikaVRsYaqQLflALklLK---~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~enei  592 (752)
T KOG0670|consen  518 LNLREVLKKYGRN--VGLHIKAVRSYAQQLFLALKLLK---KCGVLHADIKPDNILVNESKNILKLCDFGSASFASENEI  592 (752)
T ss_pred             chHHHHHHHhCcc--cceeehHHHHHHHHHHHHHHHHH---hcCeeecccCccceEeccCcceeeeccCccccccccccc
Confidence            5999999876532  23566788889999999999998   4569999999999999865 5789999999887653   


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCC
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD  538 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~  538 (640)
                       ++..+..|.|||++.+-       .|+...|+||.||.||||+||+..|.+
T Consensus       593 tPYLVSRFYRaPEIiLG~-------~yd~~iD~WSvgctLYElYtGkIlFpG  637 (752)
T KOG0670|consen  593 TPYLVSRFYRAPEIILGL-------PYDYPIDTWSVGCTLYELYTGKILFPG  637 (752)
T ss_pred             cHHHHHHhccCcceeecC-------cccCCccceeeceeeEEeeccceecCC
Confidence             45567889999987554       445679999999999999999988764

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.90  E-value=1.2e-23  Score=199.00  Aligned_cols=171  Identities=18%  Similarity=0.209  Sum_probs=122.1

Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-Ccc
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-PFF  490 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-~~~  490 (640)
                      |+|.++++...    .+++|..+..++.|+++||+|||+.+         ||+|||++.++.+|+  ||+++.... ...
T Consensus         1 GsL~~~l~~~~----~~l~~~~~~~i~~qi~~~L~~lH~~~---------kp~Nil~~~~~~~~~--fG~~~~~~~~~~~   65 (176)
T smart00750        1 VSLADILEVRG----RPLNEEEIWAVCLQCLRALRELHRQA---------KSGNILLTWDGLLKL--DGSVAFKTPEQSR   65 (176)
T ss_pred             CcHHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHHhcC---------CcccEeEcCccceee--ccceEeeccccCC
Confidence            78999997543    25899999999999999999999532         999999999999999  999887643 335


Q ss_pred             ccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChHH
Q 006559          491 INDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEM  570 (640)
Q Consensus       491 ~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  570 (640)
                      ++..|+|||++       ....++.++|||||||++|||+||+.||..... .....+.........   ++........
T Consensus        66 g~~~y~aPE~~-------~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~  134 (176)
T smart00750       66 VDPYFMAPEVI-------QGQSYTEKADIYSLGITLYEALDYELPYNEERE-LSAILEILLNGMPAD---DPRDRSNLES  134 (176)
T ss_pred             CcccccChHHh-------cCCCCcchhhHHHHHHHHHHHHhCCCCccccch-hcHHHHHHHHHhccC---CccccccHHH
Confidence            68899999975       344567899999999999999999999964321 111111111100000   0000000000


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          571 EEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       571 ~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      .....++.+++.+||+.+|++||++.++++.+..+..+
T Consensus       135 ~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~~~  172 (176)
T smart00750      135 VSAARSFADFMRVCASRLPQRREAANHYLAHCRALFAE  172 (176)
T ss_pred             HHhhhhHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Confidence            11112578889999999999999999999988876543

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.90  E-value=5.1e-24  Score=213.43  Aligned_cols=184  Identities=21%  Similarity=0.324  Sum_probs=154.9

Q ss_pred             hccccccCcceEEEEEeC----CCcEEEEEEeccccchHHHHHHHHHHhccC-CCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD----GGDVVVVKRIRERKKKREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~----~~~~vavK~l~~~~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .++||+|.|++||++...    ....||+|.+.....-..+..|+++|..+. |.||+++.+++...+...+|+||++.-
T Consensus        41 v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~ivlp~~~H~  120 (418)
T KOG1167|consen   41 VNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSPSRILNELEMLYRLGGSDNIIKLNGCFRNNDQVAIVLPYFEHD  120 (418)
T ss_pred             hccccccchhhhhhhhHhhhccccceEeeeecccccCchHHHHHHHHHHHhccchhhhcchhhhccCCeeEEEecccCcc
Confidence            568999999999999843    456799999987766667889999988875 899999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC-CCCeEEccCCcccccC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ-LGNACISDIGVHQLFH-----  486 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~-~~~~kl~DfGl~~~~~-----  486 (640)
                      ...++...        ++...+..+.+.+.+||+|+|   ..+||||||||+|+|.+. .+.-.|.|||++...+     
T Consensus       121 ~f~~l~~~--------l~~~~i~~Yl~~ll~Al~~~h---~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~~~~~  189 (418)
T KOG1167|consen  121 RFRDLYRS--------LSLAEIRWYLRNLLKALAHLH---KNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQRYDGYQQT  189 (418)
T ss_pred             CHHHHHhc--------CCHHHHHHHHHHHHHHhhhhh---ccCccccCCCccccccccccCCceEEechhHHHHHhhhhh
Confidence            99998863        567788899999999999999   556999999999999984 4677899999976210     


Q ss_pred             ------------C---------------------------------CccccccccCCccccCCCCccccCCCCCccchHH
Q 006559          487 ------------T---------------------------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYS  521 (640)
Q Consensus       487 ------------~---------------------------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~S  521 (640)
                                  .                                 ...+|++|+|||++.      ....-++++||||
T Consensus       190 ~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~------k~~~QttaiDiws  263 (418)
T KOG1167|consen  190 EHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLF------RCPRQTTAIDIWS  263 (418)
T ss_pred             hhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHh------hccCcCCccceee
Confidence                        0                                 013478999999874      3445578999999


Q ss_pred             HHHHHHHHHhCCCCCCC
Q 006559          522 FGVVLLEILTGKMAKGD  538 (640)
Q Consensus       522 fGvvl~el~tg~~p~~~  538 (640)
                      -||+++-+++++.||..
T Consensus       264 ~GVI~Lslls~~~PFf~  280 (418)
T KOG1167|consen  264 AGVILLSLLSRRYPFFK  280 (418)
T ss_pred             ccceeehhhcccccccc
Confidence            99999999999999874

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=2.9e-22  Score=239.15  Aligned_cols=184  Identities=33%  Similarity=0.545  Sum_probs=122.7

Q ss_pred             CChhhHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCceEecCCCCcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCC
Q 006559           22 SPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKN  100 (640)
Q Consensus        22 ~~~~~~~~ll~~k~~~~~~~~~~~sW~~~~~~c~~~w~gv~C~~~~~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~  100 (640)
                      ....|..+|+.||+++.++...+.+|+...+||  .|.||+|+.. ++|+.|+|.+++++|.. ..+..+++|+.|+|++
T Consensus        26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c--~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~  102 (968)
T PLN00113         26 LHAEELELLLSFKSSINDPLKYLSNWNSSADVC--LWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSN  102 (968)
T ss_pred             CCHHHHHHHHHHHHhCCCCcccCCCCCCCCCCC--cCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCC
Confidence            356899999999999965555567896555655  8999999864 69999999999988865 5678888888888888


Q ss_pred             CcCCCCCC-C-CCCCCCCcEEEccccccccc----------------------CCccCCCCCCCCEEEcccCCCCCCCCc
Q 006559          101 NLLSSSNL-N-LSSWPHLKHLYLSHNRFTGT----------------------FPSGVSSLRHLRRVDLSHNAYEGEIPM  156 (640)
Q Consensus       101 N~l~~~~~-~-~~~l~~L~~L~Ls~N~l~g~----------------------~p~~~~~l~~L~~L~Ls~N~l~g~~p~  156 (640)
                      |.+++..| . +..+++|++|+|++|+++|.                      +|..++++++|++|+|++|.+.+.+| 
T Consensus       103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-  181 (968)
T PLN00113        103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-  181 (968)
T ss_pred             CccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCC-
Confidence            88876544 2 33555666666666655554                      44445555555555555555555555 


Q ss_pred             hhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCC
Q 006559          157 TELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSP  209 (640)
Q Consensus       157 ~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~  209 (640)
                      ..+.++++|++|+|++|++++.+|..+..+.+|+.|+|++|++++.+|..++.
T Consensus       182 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  234 (968)
T PLN00113        182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG  234 (968)
T ss_pred             hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence            44555555555555555555555555555555555555555555555554443

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.87  E-value=1.5e-21  Score=202.54  Aligned_cols=147  Identities=16%  Similarity=0.176  Sum_probs=114.1

Q ss_pred             hhccccccCcceEEEEEeC--CCcEEEEEEeccc-------cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVLD--GGDVVVVKRIRER-------KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~--~~~~vavK~l~~~-------~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||+||+|+..  +++.||||++...       ...+.+.+|++++++++|+|++..+..   .+..|+|||
T Consensus        22 ~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~---~~~~~LVmE   98 (365)
T PRK09188         22 ETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA---TGKDGLVRG   98 (365)
T ss_pred             EccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE---cCCcEEEEE
Confidence            3568999999999999864  5777899987532       123458899999999999999963322   246899999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCC-CCCCeEECCCCCeEEccCCcccccC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHL-SSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdl-k~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      |+++++|... ..        ..   ...++.|+++||+|||+   .+|+|||| ||+|||++.++.+||+|||+++.+.
T Consensus        99 ~~~G~~L~~~-~~--------~~---~~~~~~~i~~aL~~lH~---~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~  163 (365)
T PRK09188         99 WTEGVPLHLA-RP--------HG---DPAWFRSAHRALRDLHR---AGITHNDLAKPQNWLMGPDGEAAVIDFQLASVFR  163 (365)
T ss_pred             ccCCCCHHHh-Cc--------cc---hHHHHHHHHHHHHHHHH---CCCeeCCCCCcceEEEcCCCCEEEEECccceecc
Confidence            9999999732 11        01   14578899999999994   56999999 9999999999999999999998654


Q ss_pred             CC--------------ccccccccCCccc
Q 006559          487 TP--------------FFINDAYNAPELK  501 (640)
Q Consensus       487 ~~--------------~~~~~~y~aPE~~  501 (640)
                      ..              ...+..|+|||++
T Consensus       164 ~~~~~~~~~~~~d~~~~~~~~~~~~pe~~  192 (365)
T PRK09188        164 RRGALYRIAAYEDLRHLLKHKRTYAPDAL  192 (365)
T ss_pred             cCcchhhhhhhhhhhhhhccCccCCcccC
Confidence            32              1235568999965

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.87  E-value=7e-22  Score=208.29  Aligned_cols=219  Identities=25%  Similarity=0.368  Sum_probs=164.9

Q ss_pred             HhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecC
Q 006559          381 IGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGH  460 (640)
Q Consensus       381 l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrd  460 (640)
                      |+.+.|.|+.++.|.+.+....+.|.+||..|+|.+.+....    ..++|.....+.+++++||+|+|+.  +-..|+.
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~----~~~d~~F~~s~~rdi~~Gl~ylh~s--~i~~hg~   74 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNED----IKLDYFFILSFIRDISKGLAYLHNS--PIGYHGA   74 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhccc----cCccHHHHHHHHHHHHHHHHHHhcC--cceeeee
Confidence            456899999999999999999999999999999999998632    4689999999999999999999953  3339999


Q ss_pred             CCCCCeEECCCCCeEEccCCcccccCC--------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhC
Q 006559          461 LSSSNIVVDQLGNACISDIGVHQLFHT--------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG  532 (640)
Q Consensus       461 lk~~NILl~~~~~~kl~DfGl~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg  532 (640)
                      ++++|+++|....+|++|||+......        ......-|.|||++............+.++||||||++++|+++.
T Consensus        75 l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r  154 (484)
T KOG1023|consen   75 LKSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFR  154 (484)
T ss_pred             eccccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhc
Confidence            999999999999999999999877631        111234589999886553332223367889999999999999999


Q ss_pred             CCCCCCCCcch--HHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 006559          533 KMAKGDGELGI--VKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGS  610 (640)
Q Consensus       533 ~~p~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~  610 (640)
                      +.||+......  .+.+..+...  ....+.+.+....   +...+++.++..||..+|++||++..|-..++.+.....
T Consensus       155 ~~~~~~~~~~~~~~eii~~~~~~--~~~~~rP~i~~~~---e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~~~~~  229 (484)
T KOG1023|consen  155 SGPFDLRNLVEDPDEIILRVKKG--GSNPFRPSIELLN---ELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTINKGGS  229 (484)
T ss_pred             cCccccccccCChHHHHHHHHhc--CCCCcCcchhhhh---hcchHHHHHHHHhcccChhhCccHHHHHhhhhhhccccc
Confidence            99998522211  1222111110  1111222222111   233368889999999999999999999999999887654

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.83  E-value=2.6e-20  Score=177.68  Aligned_cols=139  Identities=15%  Similarity=0.156  Sum_probs=106.3

Q ss_pred             ccccccCcceEEEEEeCCCcEEEEEEeccccc---h-------------------------HHHHHHHHHHhccCCCccc
Q 006559          339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKK---K-------------------------REVDEWLRVIGGLRHSNIV  390 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~---~-------------------------~~~~~e~~~l~~l~H~niv  390 (640)
                      ..||+|+||.||+|...+|+.||||+++....   .                         .....|++.+.++.|+++.
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v~   82 (190)
T cd05147           3 GCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGIP   82 (190)
T ss_pred             CccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            46999999999999988899999999875411   0                         1123488889999888775


Q ss_pred             ceeEEEEcCCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC
Q 006559          391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ  470 (640)
Q Consensus       391 ~l~~~~~~~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~  470 (640)
                      ....+..  ...+|||||++++++........     +++......++.|++.+|.|+|+  ..+|+||||||+|||++ 
T Consensus        83 ~p~~~~~--~~~~iVmE~i~g~~l~~~~~~~~-----~~~~~~~~~i~~qi~~~L~~l~H--~~giiHrDlkP~NIli~-  152 (190)
T cd05147          83 CPEPILL--KSHVLVMEFIGDDGWAAPRLKDA-----PLSESKARELYLQVIQIMRILYQ--DCRLVHADLSEYNLLYH-  152 (190)
T ss_pred             CCcEEEe--cCCEEEEEEeCCCCCcchhhhcC-----CCCHHHHHHHHHHHHHHHHHHHH--hCCcccCCCCHHHEEEE-
Confidence            4433322  22389999999887765432221     47888999999999999999942  34599999999999998 


Q ss_pred             CCCeEEccCCcccccCC
Q 006559          471 LGNACISDIGVHQLFHT  487 (640)
Q Consensus       471 ~~~~kl~DfGl~~~~~~  487 (640)
                      ++.++|+|||++...+.
T Consensus       153 ~~~v~LiDFG~a~~~~~  169 (190)
T cd05147         153 DGKLYIIDVSQSVEHDH  169 (190)
T ss_pred             CCcEEEEEccccccCCC
Confidence            47899999999976543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.82  E-value=5.2e-19  Score=183.08  Aligned_cols=250  Identities=22%  Similarity=0.303  Sum_probs=180.8

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEecccc-----chHHHHHHHHHHhccCCC-cccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHS-NIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~-niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||.|+||.||++...  ..+++|.+....     ....+.+|+.+++.+.|+ +|+++.+++......++++||+.+
T Consensus         5 ~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   82 (384)
T COG0515           5 LRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEYVDG   82 (384)
T ss_pred             EEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEecCCC
Confidence            356899999999999977  788999987652     245688889999999988 799999999777778999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC-CeEEccCCcccccC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG-NACISDIGVHQLFH----  486 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~-~~kl~DfGl~~~~~----  486 (640)
                      +++.+++......  ..+.......+..|++.+++|+|..   +++|||+||+||+++..+ .++++|||.++.+.    
T Consensus        83 ~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~H~~---~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~  157 (384)
T COG0515          83 GSLEDLLKKIGRK--GPLSESEALFILAQILSALEYLHSK---GIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGS  157 (384)
T ss_pred             CcHHHHHHhcccc--cCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeecCCCCeEEEeccCcceecCCCCc
Confidence            9999777644211  2477788999999999999999954   499999999999999988 79999999987543    


Q ss_pred             --------CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc--hHHHHHHhhccccc
Q 006559          487 --------TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG--IVKWVQMMGQDESA  556 (640)
Q Consensus       487 --------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~--~~~~~~~~~~~~~~  556 (640)
                              ....++..|++||......    ...+....|+||+|++++++++|..|+......  ...-..........
T Consensus       158 ~~~~~~~~~~~~~t~~~~~pe~~~~~~----~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  233 (384)
T COG0515         158 TSSIPALPSTSVGTPGYMAPEVLLGLS----LAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTP  233 (384)
T ss_pred             cccccccccccccccccCCHHHhcCCC----CCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCCc
Confidence                    2234588999999753210    145667899999999999999999997644321  11111111111000


Q ss_pred             ccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          557 WEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       557 ~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                        ........... ......+.++...|+..+|..|.++.+....
T Consensus       234 --~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  275 (384)
T COG0515         234 --SLASPLSPSNP-ELISKAASDLLKKLLAKDPKNRLSSSSDLSH  275 (384)
T ss_pred             --ccccccCcccc-chhhHHHHHHHHHHHhcCchhcCCHHHHhhc
Confidence              00000000000 1112345667777888999999998877654

>PLN03150 hypothetical protein; Provisional

Probab=99.82  E-value=8.7e-20  Score=204.57  Aligned_cols=138  Identities=29%  Similarity=0.495  Sum_probs=88.8

Q ss_pred             ChhhHHHHHHhhhcCCCCCCCCCCCCCCCCCCC---CCCCceEecCCCCcEEEEEeCCCCCCCCchhccCCCCCCEEeCC
Q 006559           23 PYSDISTLLSFKASVTGSSDSLSSWVNSTDPCF---DSWRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLK   99 (640)
Q Consensus        23 ~~~~~~~ll~~k~~~~~~~~~~~sW~~~~~~c~---~~w~gv~C~~~~~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls   99 (640)
                      ...|..+|+.+|..+..+..  .+|+ + ++|+   +.|.||+|+....            .+       ...++.|+|+
T Consensus       370 ~~~~~~aL~~~k~~~~~~~~--~~W~-g-~~C~p~~~~w~Gv~C~~~~~------------~~-------~~~v~~L~L~  426 (623)
T PLN03150        370 LLEEVSALQTLKSSLGLPLR--FGWN-G-DPCVPQQHPWSGADCQFDST------------KG-------KWFIDGLGLD  426 (623)
T ss_pred             CchHHHHHHHHHHhcCCccc--CCCC-C-CCCCCcccccccceeeccCC------------CC-------ceEEEEEECC
Confidence            45689999999999854432  3794 3 5553   3799999963210            00       0123445555


Q ss_pred             CCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceec
Q 006559          100 NNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGT  178 (640)
Q Consensus       100 ~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~  178 (640)
                      +|.|+|..+ .+..+++|+.|+|++|.|+|.+|..++++++|+.|||++|+|+|.+| ..++++++|+.|+|++|+|+|.
T Consensus       427 ~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-~~l~~L~~L~~L~Ls~N~l~g~  505 (623)
T PLN03150        427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLRILNLNGNSLSGR  505 (623)
T ss_pred             CCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc-hHHhcCCCCCEEECcCCccccc
Confidence            565555433 46666677777777777777777777777777777777777777666 5566677777777777666666


Q ss_pred             ccCCcC
Q 006559          179 LYSVNS  184 (640)
Q Consensus       179 ~~~~~~  184 (640)
                      +|..+.
T Consensus       506 iP~~l~  511 (623)
T PLN03150        506 VPAALG  511 (623)
T ss_pred             CChHHh
Confidence            665543

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=1.5e-20  Score=207.71  Aligned_cols=249  Identities=19%  Similarity=0.257  Sum_probs=172.2

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEec----cccchHH----HHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIR----ERKKKRE----VDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~----~~~~~~~----~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+++|.|++|.|+.... ......+.|..+    .....+.    +..|..+-..++|||++..+..+.+....+-+||
T Consensus       322 ~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~mE  401 (601)
T KOG0590|consen  322 PGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSME  401 (601)
T ss_pred             ccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhhh
Confidence            467899999997777663 333334444332    2111111    4456667778899999988887777776666799


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      ||+. +|..++....     .+...++..++.|+..|++|+|+   .+|.|||+|++|+++..+|.+||+|||.+..+..
T Consensus       402 ~~~~-Dlf~~~~~~~-----~~~~~e~~c~fKqL~~Gv~y~h~---~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~  472 (601)
T KOG0590|consen  402 YCPY-DLFSLVMSNG-----KLTPLEADCFFKQLLRGVKYLHS---MGLAHRDLKLENLLVTENGILKIIDFGAASVFRY  472 (601)
T ss_pred             cccH-HHHHHHhccc-----ccchhhhhHHHHHHHHHHHHHHh---cCceeccCccccEEEecCCceEEeecCcceeecc
Confidence            9999 9999987652     36677888899999999999995   5599999999999999999999999999866532


Q ss_pred             ----------CccccccccCCccccCCCCccccCCCCC-ccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccc
Q 006559          488 ----------PFFINDAYNAPELKFNNNNNYSQRKFWQ-RCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESA  556 (640)
Q Consensus       488 ----------~~~~~~~y~aPE~~~~~~~~~~~~~~~~-k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  556 (640)
                                ...++..|+|||++..       ..|++ ..||||.||++..|++|+.||.........+.......  .
T Consensus       473 ~~e~~~~~~~g~~gS~pY~apE~~~~-------~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~~~~~~~--~  543 (601)
T KOG0590|consen  473 PWEKNIHESSGIVGSDPYLAPEVLTG-------KEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSFKTNNYSD--Q  543 (601)
T ss_pred             CcchhhhhhcCcccCCcCcCcccccc-------cccCcchhhhhhccceEEEEecCCCccccccccccchhhhcccc--c
Confidence                      2456889999997533       33433 58999999999999999999974222111110000000  0


Q ss_pred             ccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhh
Q 006559          557 WEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDIR  606 (640)
Q Consensus       557 ~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i~  606 (640)
                      ..+....   ..-..........++.++++.+|.+|-||.+|++  .+++|.
T Consensus       544 ~~~~~~~---~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~d~W~~~i~  592 (601)
T KOG0590|consen  544 RNIFEGP---NRLLSLLPRETRIIIYRMLQLDPTKRITIEQILNDEWIRSIE  592 (601)
T ss_pred             cccccCh---HHHHHhchhhHHHHHHHHccCChhheecHHHHhhChHhhhcc
Confidence            0011100   0112233345566788899999999999999975  444443

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.81  E-value=1.1e-19  Score=169.00  Aligned_cols=246  Identities=17%  Similarity=0.191  Sum_probs=174.6

Q ss_pred             hccccccCcceEEEEE-eCCCcEEEEEEeccccchHHHHHHHHHHhccCC-CcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          338 AELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLRVIGGLRH-SNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H-~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      .+.||.|+||.+|.|. ..+|..||||.-.......+..-|.++.+.|+| ..|..++.|..++..-.+|||.+ +.+|.
T Consensus        20 vrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMdLL-GPsLE   98 (341)
T KOG1163|consen   20 VRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMDLL-GPSLE   98 (341)
T ss_pred             EEeecCCchhheeeeeeccCCceEEEEeecccCCCcchhHHHHHHHHhccCCCCchhhhhccccccceeeeecc-CccHH
Confidence            4679999999999998 788999999987666555667778888888876 57777888888888999999987 77999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC---CCCeEEccCCcccccCCC----
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ---LGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~---~~~~kl~DfGl~~~~~~~----  488 (640)
                      +...-..    ..++..+.+-+|-|+..-++|+|..   ++|||||||+|.|+.-   ...+.++|||+++.+.+.    
T Consensus        99 dLfnfC~----R~ftmkTvLMLaDQml~RiEyvH~r---~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~  171 (341)
T KOG1163|consen   99 DLFNFCS----RRFTMKTVLMLADQMLSRIEYVHLR---NFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQ  171 (341)
T ss_pred             HHHHHHh----hhhhHHhHHHHHHHHHHHHHHHHhh---ccccccCCccceeeccccccceEEEEeccchhhhccccccc
Confidence            8876443    2588899999999999999999954   4999999999999863   346789999999876421    


Q ss_pred             ---------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccc
Q 006559          489 ---------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       489 ---------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  559 (640)
                               ..+|..|.+-...       ....-+.+-|+=|+|-+|...--|..||.+-.....  .+..      ..|
T Consensus       172 HIpyre~r~ltGTaRYASinAh-------~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka~tk--~QKy------EkI  236 (341)
T KOG1163|consen  172 HIPYREDRNLTGTARYASINAH-------LGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKAATK--KQKY------EKI  236 (341)
T ss_pred             cCccccCCccceeeeehhhhhh-------hhhhhhhhhhhhhhcceeeeeecCCCcccccchhhH--HHHH------HHH
Confidence                     2346667654421       222334578999999999999999999975221111  1110      111


Q ss_pred             cchhhccChH--HHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          560 FDFELIMDKE--MEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       560 ~d~~~~~~~~--~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                      .......+.+  ....+.++.-.+.-|-..--++-|....+.++.+-+.
T Consensus       237 ~EkK~s~~ie~LC~G~P~EF~myl~Y~R~L~F~E~Pdy~ylrqlFriLf  285 (341)
T KOG1163|consen  237 SEKKMSTPIEVLCKGFPAEFAMYLNYCRGLGFEEKPDYMYLRQLFRILF  285 (341)
T ss_pred             HHhhcCCCHHHHhCCCcHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHH
Confidence            1111111111  1122334455556688888888898877776666543

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.81  E-value=2.7e-19  Score=171.34  Aligned_cols=138  Identities=17%  Similarity=0.197  Sum_probs=107.7

Q ss_pred             ccccccCcceEEEEEeCCCcEEEEEEeccccc----------------------------hHHHHHHHHHHhccCCCccc
Q 006559          339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKK----------------------------KREVDEWLRVIGGLRHSNIV  390 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~----------------------------~~~~~~e~~~l~~l~H~niv  390 (640)
                      ..||+|+||.||+|+..+|+.||||.++....                            ......|.+.+.++.|+++.
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~   82 (190)
T cd05145           3 GCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGVP   82 (190)
T ss_pred             ceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            46999999999999987899999999875411                            01124678888899999886


Q ss_pred             ceeEEEEcCCeEEEEEeccCCCCHHHh-hccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC
Q 006559          391 SIRAYCNGKDELFLVYDYLPHGSLHSL-LHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD  469 (640)
Q Consensus       391 ~l~~~~~~~~~~~lV~Ey~~~gsL~~~-l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~  469 (640)
                      ....+...  ..+|||||++++++... +...      .++......++.|++.++.|+|+  ..+|+||||||+|||++
T Consensus        83 ~p~~~~~~--~~~lVmE~~~g~~~~~~~l~~~------~~~~~~~~~i~~~l~~~l~~lH~--~~givHrDlkP~NIll~  152 (190)
T cd05145          83 VPEPILLK--KNVLVMEFIGDDGSPAPRLKDV------PLEEEEAEELYEQVVEQMRRLYQ--EAGLVHGDLSEYNILYH  152 (190)
T ss_pred             CceEEEec--CCEEEEEEecCCCchhhhhhhc------cCCHHHHHHHHHHHHHHHHHHHH--hCCEecCCCChhhEEEE
Confidence            55544433  24899999998865433 3321      35677888999999999999995  14699999999999999


Q ss_pred             CCCCeEEccCCcccccCC
Q 006559          470 QLGNACISDIGVHQLFHT  487 (640)
Q Consensus       470 ~~~~~kl~DfGl~~~~~~  487 (640)
                       ++.++|+|||++.....
T Consensus       153 -~~~~~liDFG~a~~~~~  169 (190)
T cd05145         153 -DGKPYIIDVSQAVELDH  169 (190)
T ss_pred             -CCCEEEEEcccceecCC
Confidence             89999999999987643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.80  E-value=2.4e-18  Score=178.88  Aligned_cols=249  Identities=19%  Similarity=0.184  Sum_probs=174.6

Q ss_pred             hhccccccCcceEEEEEeCCC--cEEEEEEeccccch--HHHHHHHHHHhccCC----CcccceeEEE-EcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVLDGG--DVVVVKRIRERKKK--REVDEWLRVIGGLRH----SNIVSIRAYC-NGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~--~~vavK~l~~~~~~--~~~~~e~~~l~~l~H----~niv~l~~~~-~~~~~~~lV~E  407 (640)
                      ..+.||+|+||.||++.....  ..+|+|........  ..+..|..++..+.+    +++..+.+.. ......|+||+
T Consensus        22 i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~iVM~  101 (322)
T KOG1164|consen   22 LGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFIVMS  101 (322)
T ss_pred             EeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEEEEe
Confidence            356899999999999996553  47888876654221  256677777777762    5788888888 47778999999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC-----CCeEEccCCcc
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL-----GNACISDIGVH  482 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~-----~~~kl~DfGl~  482 (640)
                      .+ +.+|.++.....   ...++....++|+.|+..+|++||   ..+++||||||.|+++...     ..+.|.|||++
T Consensus       102 l~-G~sL~dl~~~~~---~~~fs~~T~l~ia~q~l~~l~~lH---~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGla  174 (322)
T KOG1164|consen  102 LL-GPSLEDLRKRNP---PGRFSRKTVLRIAIQNLNALEDLH---SKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLA  174 (322)
T ss_pred             cc-CccHHHHHHhCC---CCCcCHhHHHHHHHHHHHHHHHHH---hcCcccCCcCHHHeeecCCCCcccceEEEEecCCC
Confidence            76 779999775443   235888999999999999999999   5569999999999999854     46899999999


Q ss_pred             cccC--C--------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHH
Q 006559          483 QLFH--T--------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVK  545 (640)
Q Consensus       483 ~~~~--~--------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~  545 (640)
                      +.+.  .              .+.+|..|.++..       ......+.+.|+||++-++.|+..|..||...... ...
T Consensus       175 r~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~-------H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~  247 (322)
T KOG1164|consen  175 RRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINV-------HLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDLKS  247 (322)
T ss_pred             ccccccCCCCcccccCCCCccCCCCccccccHHH-------hCCCccCCchhhhhHHHHHHHHhcCCCCCccccccchHH
Confidence            8321  0              1225667777773       45556678999999999999999999999643221 111


Q ss_pred             HHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 006559          546 WVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG  609 (640)
Q Consensus       546 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~  609 (640)
                      -+.........    ..   .....+.+   +.++...+-..+..++|....+...+++...+.
T Consensus       248 ~~~~~~~~~~~----~~---~~~~~~~~---~~~~~~~~~~~~~~~~Pdy~~~~~~l~~~~~~~  301 (322)
T KOG1164|consen  248 KFEKDPRKLLT----DR---FGDLKPEE---FAKILEYIDSLDYEDKPDYEKLAELLKDVFDSE  301 (322)
T ss_pred             HHHHHhhhhcc----cc---ccCCChHH---HHHHHHHhhccCCcCCCCHHHHHHHHHHHHHhc
Confidence            11111110000    00   00111223   333444455578999999999999998877654

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.79  E-value=1.1e-18  Score=164.84  Aligned_cols=175  Identities=16%  Similarity=0.116  Sum_probs=129.2

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccccc------hHHHHHHHHHHhccCC-CcccceeEEEEcCCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERKK------KREVDEWLRVIGGLRH-SNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~------~~~~~~e~~~l~~l~H-~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ...|++|+||+||.+.- ++..++.+.+.....      ..-+.+|+++|++|.| ++|++++++    +..+++|||++
T Consensus         7 ~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmeyI~   81 (218)
T PRK12274          7 NEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSYLA   81 (218)
T ss_pred             ceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEeeec
Confidence            45799999999997665 667777777765532      2247789999999964 789999886    34799999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCC-CCCCeEECCCCCeEEccCCcccccCCCc
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHL-SSSNIVVDQLGNACISDIGVHQLFHTPF  489 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdl-k~~NILl~~~~~~kl~DfGl~~~~~~~~  489 (640)
                      +.+|.+.+..            ....++.|++.+|+++|.   .+|+|||| ||+|||++.++.++|+|||++.......
T Consensus        82 G~~L~~~~~~------------~~~~~~~qi~~~L~~lH~---~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~  146 (218)
T PRK12274         82 GAAMYQRPPR------------GDLAYFRAARRLLQQLHR---CGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRA  146 (218)
T ss_pred             CccHHhhhhh------------hhHHHHHHHHHHHHHHHH---CcCccCCCCCcceEEEcCCCCEEEEECCCceecCCcc
Confidence            9998754321            113467899999999994   55999999 7999999999999999999998543221


Q ss_pred             -------------------cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCC
Q 006559          490 -------------------FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKG  537 (640)
Q Consensus       490 -------------------~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~  537 (640)
                                         ..++.|+.|+..     ......--.+.+.++-|.-+|.++||..++.
T Consensus       147 ~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~-----~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~  208 (218)
T PRK12274        147 RWMRLLAREDLRHLLKHKRMYCPAALTPVER-----RVLKRTSWIRELWFATGKPVYRFVTRRVLHW  208 (218)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH-----hhhccchhHHHHHHHhcchHHHHHhccCCcc
Confidence                               014445555521     1111122245688999999999999998865

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.78  E-value=3.6e-19  Score=171.83  Aligned_cols=162  Identities=12%  Similarity=0.148  Sum_probs=122.6

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccccc--hH---------HHHHHHHHHhccCCCcccceeEEEEcC-------
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERKK--KR---------EVDEWLRVIGGLRHSNIVSIRAYCNGK-------  399 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~--~~---------~~~~e~~~l~~l~H~niv~l~~~~~~~-------  399 (640)
                      .+++|.|+||.||.... ++..+|+|.+++...  .+         .+++|++.+.+++|++|..+.+++...       
T Consensus        36 ~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~~~~~~~  114 (232)
T PRK10359         36 IKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAERKTLRY  114 (232)
T ss_pred             EEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeecccccccc
Confidence            57899999999999665 566899999976521  11         157888899999999999998886532       


Q ss_pred             -CeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEcc
Q 006559          400 -DELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISD  478 (640)
Q Consensus       400 -~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~D  478 (640)
                       ...+|||||+++.+|.++..         ++.    ....+++.+|..+|   ..+++|||+||+||+++.++ ++++|
T Consensus       115 ~~~~~lvmEyi~G~tL~~~~~---------~~~----~~~~~i~~~l~~lH---~~gi~H~Dikp~Nili~~~g-i~liD  177 (232)
T PRK10359        115 AHTYIMLIEYIEGVELNDMPE---------ISE----DVKAKIKASIESLH---QHGMVSGDPHKGNFIVSKNG-LRIID  177 (232)
T ss_pred             cCCeEEEEEEECCccHHHhhh---------ccH----HHHHHHHHHHHHHH---HcCCccCCCChHHEEEeCCC-EEEEE
Confidence             35899999999999988732         222    24558999999999   45699999999999999988 99999


Q ss_pred             CCcccccCCCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHH
Q 006559          479 IGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEIL  530 (640)
Q Consensus       479 fGl~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~  530 (640)
                      ||.........       |-+.      ....+.+..++|+||||+.+.-..
T Consensus       178 fg~~~~~~e~~-------a~d~------~vler~y~~~~di~~lg~~~~~~~  216 (232)
T PRK10359        178 LSGKRCTAQRK-------AKDR------IDLERHYGIKNEIKDLGYYLLIYK  216 (232)
T ss_pred             CCCcccccchh-------hHHH------HHHHhHhcccccccceeEeehHHH
Confidence            99876553221       1111      122334556899999999876654

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.78  E-value=3.8e-20  Score=194.89  Aligned_cols=182  Identities=22%  Similarity=0.320  Sum_probs=149.5

Q ss_pred             cccccCcceEEEEE----eCCCcEEEEEEecccc----chHHHHHHHHHHhccC-CCcccceeEEEEcCCeEEEEEeccC
Q 006559          340 LLGKGCVGATYKVV----LDGGDVVVVKRIRERK----KKREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~----~~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ++|+|.||.|+.++    .+.|..+|.|.+++..    .+.....|..++...+ ||.+|++...++.+...+++++|..
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~r   80 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLR   80 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcc
Confidence            47999999999765    3446778888876541    1123344556777776 9999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC--
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP--  488 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~--  488 (640)
                      +|+|...+....     .++......+...+|-+++++|   +.+|+|||+|++||+++.+|.+|+.|||+++..-..  
T Consensus        81 gg~lft~l~~~~-----~f~~~~~~~~~aelaLald~lh---~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~  152 (612)
T KOG0603|consen   81 GGDLFTRLSKEV-----MFDELDVAFYLAELALALDHLH---KLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKI  152 (612)
T ss_pred             cchhhhccccCC-----chHHHHHHHHHHHHHHHHhhcc---hhHHHHhcccccceeecccCccccCCchhhhHhHhhhh
Confidence            999998887543     4666777778889999999999   556999999999999999999999999999886443  


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCC
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD  538 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~  538 (640)
                      .++|..|||||+.-         .....+|.||||++++||+||..||..
T Consensus       153 ~cgt~eymApEI~~---------gh~~a~D~ws~gvl~felltg~~pf~~  193 (612)
T KOG0603|consen  153 ACGTYEYRAPEIIN---------GHLSAADWWSFGVLAFELLTGTLPFGG  193 (612)
T ss_pred             cccchhhhhhHhhh---------ccCCcccchhhhhhHHHHhhCCCCCch
Confidence            35589999999752         345689999999999999999999975

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.77  E-value=7.7e-18  Score=163.79  Aligned_cols=250  Identities=15%  Similarity=0.198  Sum_probs=180.6

Q ss_pred             hhccccccCcceEEEEE-eCCCcEEEEEEeccccchHHHHHHHHHHhccC-CCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          337 SAELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ..++||+|.||+.+.|+ +-+++.||||.-..+....++..|.+..+.|. -++|...+.|-.+.-.-.||+|.+ +.+|
T Consensus        32 VGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidLL-GPSL  110 (449)
T KOG1165|consen   32 VGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDLL-GPSL  110 (449)
T ss_pred             eccccccCcceeeecccccccCceEEEEeccccCCcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhhh-CcCH
Confidence            47789999999999998 66789999998665555566777777776665 488888887777777888999987 7788


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC-----CCeEEccCCcccccCCC-
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL-----GNACISDIGVHQLFHTP-  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~-----~~~kl~DfGl~~~~~~~-  488 (640)
                      .++..-..    ..|+.+.+..+|.|+..-++|+|+   ..+|.|||||+|.||...     ..+.++|||+++.+..+ 
T Consensus       111 EDLFD~Cg----R~FSvKTV~miA~Qmi~rie~vH~---k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~  183 (449)
T KOG1165|consen  111 EDLFDLCG----RRFSVKTVAMIAKQMITRIEYVHE---KDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPK  183 (449)
T ss_pred             HHHHHHhc----CcccHHhHHHHHHHHHHHHHHHHh---cceeecccCccceeecCCCCCCCceEEEEeccchhhhcCcc
Confidence            88876443    258999999999999999999995   459999999999999743     35789999999987532 


Q ss_pred             ------------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHhhcccc
Q 006559          489 ------------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQDES  555 (640)
Q Consensus       489 ------------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~~~~~~  555 (640)
                                  ..+|..||...       ...++.-+.+-|+=|+|-+++..+-|..||.+-... ..+--+.++....
T Consensus       184 TkqHIPYrE~KSLsGTARYMSIN-------THlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~tnK~kYeKIGe~Kr  256 (449)
T KOG1165|consen  184 TKQHIPYREHKSLSGTARYMSIN-------THLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKADTNKEKYEKIGETKR  256 (449)
T ss_pred             ccccCccccccccccceeeeEee-------ccccchhhhhhhHHHhhhhhhhhccCCCccccccCcchHHHHHHhccccc
Confidence                        23578888766       344555667889999999999999999999852211 2222222222222


Q ss_pred             cccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          556 AWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       556 ~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ...+-+..    ...++++...+..+.   ..+-.+-|....+...+.++...
T Consensus       257 ~T~i~~Lc----~g~P~efa~Yl~yvR---~L~F~E~PDYdylr~Lf~dvldr  302 (449)
T KOG1165|consen  257 STPIEVLC----EGFPEEFATYLRYVR---RLDFFETPDYDYLRKLFDDVLDR  302 (449)
T ss_pred             cCCHHHHH----hcCHHHHHHHHHHHH---hcCcccCCCHHHHHHHHHHHHHh
Confidence            11111111    123444444444433   35667889999888888887543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.76  E-value=6.3e-19  Score=194.28  Aligned_cols=242  Identities=19%  Similarity=0.185  Sum_probs=170.4

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEecccc---chHHHHHHHHH--HhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERK---KKREVDEWLRV--IGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~---~~~~~~~e~~~--l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ..+.+|++.|=+|.+|+.+.|. |+||++-+..   .-+.+.+.++.  ...++|||.+.+.-+-......|||=+|..+
T Consensus        27 ~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t~kAAylvRqyvkh  105 (1431)
T KOG1240|consen   27 YVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQKVLVTDKAAYLVRQYVKH  105 (1431)
T ss_pred             eecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHHHHHhhHHHHHHHHHHhh
Confidence            3567999999999999988887 7788775442   23444443332  4456899999987776666778888899866


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC----C
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH----T  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~----~  487 (640)
                       +|++.|...     .-+...+..-|+.|+..||.-+|   +.+|+|+|||.+|||+..-..+.|+||.--+...    .
T Consensus       106 -nLyDRlSTR-----PFL~~iEKkWiaFQLL~al~qcH---~~gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDN  176 (1431)
T KOG1240|consen  106 -NLYDRLSTR-----PFLVLIEKKWIAFQLLKALSQCH---KLGVCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDN  176 (1431)
T ss_pred             -hhhhhhccc-----hHHHHHHHHHHHHHHHHHHHHHH---HcCccccccccceEEEeeechhhhhcccccCCccCCCCC
Confidence             899988743     24666778889999999999999   5669999999999999999999999997655421    1


Q ss_pred             C---------ccccccccCCccccCCCCccc---c-CCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcc
Q 006559          488 P---------FFINDAYNAPELKFNNNNNYS---Q-RKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQD  553 (640)
Q Consensus       488 ~---------~~~~~~y~aPE~~~~~~~~~~---~-~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~  553 (640)
                      +         ......|.|||.+..+.....   . ...+++-||||.||++.||++ |++||.-.  .+..+....   
T Consensus       177 Padf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LS--QL~aYr~~~---  251 (1431)
T KOG1240|consen  177 PADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLS--QLLAYRSGN---  251 (1431)
T ss_pred             cccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHH--HHHhHhccC---
Confidence            1         011347999998865432211   1 226789999999999999988 78888521  111111110   


Q ss_pred             cccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          554 ESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       554 ~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                           ..|++.... .++  -..+..+++.|++.||++|-++.+.++.
T Consensus       252 -----~~~~e~~Le-~Ie--d~~~Rnlil~Mi~rdPs~RlSAedyL~~  291 (1431)
T KOG1240|consen  252 -----ADDPEQLLE-KIE--DVSLRNLILSMIQRDPSKRLSAEDYLQK  291 (1431)
T ss_pred             -----ccCHHHHHH-hCc--CccHHHHHHHHHccCchhccCHHHHHHh
Confidence                 112211111 011  1146677888999999999999998865

>PRK10345 hypothetical protein; Provisional

Probab=99.75  E-value=7.1e-18  Score=162.47  Aligned_cols=132  Identities=16%  Similarity=0.135  Sum_probs=101.2

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccc--cchHHHHHHHHHHhcc-----CCCcccceeEEEEcCC---e-EEEEE
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRER--KKKREVDEWLRVIGGL-----RHSNIVSIRAYCNGKD---E-LFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l-----~H~niv~l~~~~~~~~---~-~~lV~  406 (640)
                      .++||+|+||.||.  .+.....+||++...  ...+.+.+|+++++.+     +||||++++|++.++.   . ..+|+
T Consensus         7 ~~~LG~G~~~~Vy~--hp~~~~k~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~I~   84 (210)
T PRK10345          7 QSPLGTGRHRKCYA--HPEDAQRCIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDVIA   84 (210)
T ss_pred             cceecCCCceEEEE--CCCCcCeEEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEEEe
Confidence            56799999999996  433333468887643  3456788999999998     6799999999998763   4 33789


Q ss_pred             ec--cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHH-HHhhcCCCCCceecCCCCCCeEECC----CCCeEEccC
Q 006559          407 DY--LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGL-AFLHGYNKAHLFHGHLSSSNIVVDQ----LGNACISDI  479 (640)
Q Consensus       407 Ey--~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL-~yLH~~~~~~ivHrdlk~~NILl~~----~~~~kl~Df  479 (640)
                      ||  +++|+|.+++...      .++..  ..++.|+..++ +|||+   .+||||||||+|||++.    +..++|+||
T Consensus        85 e~~G~~~~tL~~~l~~~------~~~e~--~~~~~~~L~~l~~yLh~---~~IvhrDlKp~NILl~~~~~~~~~~~LiDg  153 (210)
T PRK10345         85 DFDGKPSITLTEFAEQC------RYEED--VAQLRQLLKKLKRYLLD---NRIVTMELKPQNILCQRISESEVIPVVCDN  153 (210)
T ss_pred             cCCCCcchhHHHHHHcc------cccHh--HHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEeccCCCCCcEEEEEC
Confidence            99  6689999999653      24444  35677888788 99994   55999999999999974    347999995


Q ss_pred             Ccc
Q 006559          480 GVH  482 (640)
Q Consensus       480 Gl~  482 (640)
                      +-+
T Consensus       154 ~G~  156 (210)
T PRK10345        154 IGE  156 (210)
T ss_pred             CCC
Confidence            443

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.70  E-value=1e-16  Score=156.31  Aligned_cols=132  Identities=20%  Similarity=0.380  Sum_probs=109.9

Q ss_pred             ccccccCcceEEEEEeCCCcEEEEEEeccccc----------hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKK----------KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~----------~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      +.||+|++|.||+|.. .|..|++|.......          ...+..|++++..++|++|.....++...+..++||||
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   80 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY   80 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence            4689999999999987 566788887653311          13466788899999999998888887777889999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      +++++|.+++...        .+ .+..++.+++.+|.++|.   .+++|+|++|.|||++ ++.++|+|||.++.
T Consensus        81 ~~G~~L~~~~~~~--------~~-~~~~i~~~i~~~l~~lH~---~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         81 IEGEPLKDLINSN--------GM-EELELSREIGRLVGKLHS---AGIIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             eCCcCHHHHHHhc--------cH-HHHHHHHHHHHHHHHHHh---CCcccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            9999999998642        12 778899999999999994   5699999999999999 78999999999864

>smart00090 RIO RIO-like kinase

Probab=99.70  E-value=1e-16  Score=158.23  Aligned_cols=137  Identities=20%  Similarity=0.213  Sum_probs=104.6

Q ss_pred             hhccccccCcceEEEEE--eCCCcEEEEEEeccccc--------------------------hHHHHHHHHHHhccCCCc
Q 006559          337 SAELLGKGCVGATYKVV--LDGGDVVVVKRIRERKK--------------------------KREVDEWLRVIGGLRHSN  388 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~--~~~~~~vavK~l~~~~~--------------------------~~~~~~e~~~l~~l~H~n  388 (640)
                      ..+.||+|+||.||+|.  ..+|+.||||.++....                          ...+..|++.+.++.|..
T Consensus        32 i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~~~  111 (237)
T smart00090       32 IGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYEAG  111 (237)
T ss_pred             hCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45789999999999998  67899999999874310                          112457888888887633


Q ss_pred             --ccceeEEEEcCCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCC-ceecCCCCCC
Q 006559          389 --IVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAH-LFHGHLSSSN  465 (640)
Q Consensus       389 --iv~l~~~~~~~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~-ivHrdlk~~N  465 (640)
                        +.+.+++    ...++||||+++++|........     .+.......++.|++.+++|||   ..+ |+||||||+|
T Consensus       112 i~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~LH---~~g~iiH~Dikp~N  179 (237)
T smart00090      112 VPVPKPIAW----RRNVLVMEFIGGDGLPAPRLKDV-----EPEEEEEFELYDDILEEMRKLY---KEGELVHGDLSEYN  179 (237)
T ss_pred             CCCCeeeEe----cCceEEEEEecCCcccccccccC-----CcchHHHHHHHHHHHHHHHHHH---hcCCEEeCCCChhh
Confidence              2333332    23589999999988876543221     2445566789999999999999   556 9999999999


Q ss_pred             eEECCCCCeEEccCCcccccC
Q 006559          466 IVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       466 ILl~~~~~~kl~DfGl~~~~~  486 (640)
                      |+++ ++.++|+|||.+....
T Consensus       180 Ili~-~~~i~LiDFg~a~~~~  199 (237)
T smart00090      180 ILVH-DGKVVIIDVSQSVELD  199 (237)
T ss_pred             EEEE-CCCEEEEEChhhhccC
Confidence            9999 8899999999987544

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.70  E-value=6.8e-17  Score=160.56  Aligned_cols=196  Identities=18%  Similarity=0.198  Sum_probs=131.7

Q ss_pred             CCCcccceeEEEEc---------------------------CCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHH
Q 006559          385 RHSNIVSIRAYCNG---------------------------KDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKL  437 (640)
Q Consensus       385 ~H~niv~l~~~~~~---------------------------~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i  437 (640)
                      +|||||++.++|.+                           ...+|+||.-++. +|++++....      .+.....-|
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~~~------~s~r~~~~~  346 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWTRH------RSYRTGRVI  346 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhcCC------CchHHHHHH
Confidence            69999999877632                           2358999988765 9999997553      344455668


Q ss_pred             HHHHHHHHHHhhcCCCCCceecCCCCCCeEE--CCCC--CeEEccCCcccccCC---------C---ccccccccCCccc
Q 006559          438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV--DQLG--NACISDIGVHQLFHT---------P---FFINDAYNAPELK  501 (640)
Q Consensus       438 ~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl--~~~~--~~kl~DfGl~~~~~~---------~---~~~~~~y~aPE~~  501 (640)
                      ..|+.+|+.|||   +.+|.|||+|++|||+  |+|+  ...|+|||.+-..+.         .   .-+...-||||+.
T Consensus       347 laQlLEav~hL~---~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~  423 (598)
T KOG4158|consen  347 LAQLLEAVTHLH---KHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIA  423 (598)
T ss_pred             HHHHHHHHHHHH---HccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhh
Confidence            899999999999   5569999999999998  4555  457899997533221         1   1234568999986


Q ss_pred             cCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHH
Q 006559          502 FNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVA  581 (640)
Q Consensus       502 ~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~  581 (640)
                      -.-|.-.....| .|+|.|+.|-+.||+++...||...+....+-..  .++.        ++.  .-.+.+...+.+++
T Consensus       424 ta~PGp~avvny-~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~r~--Yqe~--------qLP--alp~~vpp~~rqlV  490 (598)
T KOG4158|consen  424 TAVPGPNAVVNY-EKADTWAAGALAYEIFGRSNPFYKRGEMLLDTRT--YQES--------QLP--ALPSRVPPVARQLV  490 (598)
T ss_pred             hcCCCCceeecc-chhhhhhhhhhHHHHhccCCcccccchheechhh--hhhh--------hCC--CCcccCChHHHHHH
Confidence            433322222223 5899999999999999999999753322211111  1110        110  01122334566777


Q ss_pred             HHccCCCCCCCCCHHHHHHHHH
Q 006559          582 LLCLAPLPKDRPNMSIVHRMIE  603 (640)
Q Consensus       582 ~~Cl~~~P~~RPs~~~v~~~L~  603 (640)
                      ...+++||.+||+..-....|+
T Consensus       491 ~~lL~r~pskRvsp~iAANvl~  512 (598)
T KOG4158|consen  491 FDLLKRDPSKRVSPNIAANVLN  512 (598)
T ss_pred             HHHhcCCccccCCccHHHhHHH
Confidence            7889999999999776655554

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.68  E-value=1.9e-16  Score=152.87  Aligned_cols=128  Identities=22%  Similarity=0.335  Sum_probs=103.9

Q ss_pred             cccccCcceEEEEEeCCCcEEEEEEecccc----------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          340 LLGKGCVGATYKVVLDGGDVVVVKRIRERK----------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~----------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      +||+|+||.||+|.+. +..|++|......          ....+..|++++..++|+++.....++...+..++||||+
T Consensus         1 ~ig~G~~~~vy~~~~~-~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   79 (199)
T TIGR03724         1 LIAKGAEAIIYLGDFL-GLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI   79 (199)
T ss_pred             CCCCCceEEEEEeecC-CccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence            4899999999999864 5778888754321          1134567899999999988766666666677789999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      ++++|.+++....      .      .++.+++.+|.++|   ..+++|+|++|.||+++ ++.+++.|||+++.
T Consensus        80 ~g~~l~~~~~~~~------~------~~~~~i~~~l~~lH---~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        80 EGKPLKDVIEEGN------D------ELLREIGRLVGKLH---KAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             CCccHHHHHhhcH------H------HHHHHHHHHHHHHH---HCCeecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            9999998875421      0      78999999999999   45699999999999999 88999999999865

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.68  E-value=1.9e-16  Score=175.83  Aligned_cols=132  Identities=23%  Similarity=0.353  Sum_probs=107.2

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccc-c--------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRER-K--------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~--------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||+||+|.+.+...++.++.... .        ..+.+..|++++++++|++++....++......++|||
T Consensus       337 ~~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~E  416 (535)
T PRK09605        337 PDHLIGKGAEADIKKGEYLGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEKTIVME  416 (535)
T ss_pred             ccceeccCCcEEEEEEeecCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCCEEEEE
Confidence            35789999999999999876554443333221 1        12346789999999999999988888877778899999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccccc
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF  485 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~  485 (640)
                      |+++++|.+++.             ....++.+++++|.|||   ..+++|||+||+|||+ +++.++|+|||+++..
T Consensus       417 ~~~g~~L~~~l~-------------~~~~~~~~i~~~L~~lH---~~giiHrDlkp~NILl-~~~~~~liDFGla~~~  477 (535)
T PRK09605        417 YIGGKDLKDVLE-------------GNPELVRKVGEIVAKLH---KAGIVHGDLTTSNFIV-RDDRLYLIDFGLGKYS  477 (535)
T ss_pred             ecCCCcHHHHHH-------------HHHHHHHHHHHHHHHHH---hCCCccCCCChHHEEE-ECCcEEEEeCcccccC
Confidence            999999998875             24568999999999999   4569999999999999 6789999999998763

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.67  E-value=2.7e-16  Score=151.73  Aligned_cols=133  Identities=16%  Similarity=0.128  Sum_probs=103.4

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEecccc------------------------chHHHHHHHHHHhccCCCc--cc
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERK------------------------KKREVDEWLRVIGGLRHSN--IV  390 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~------------------------~~~~~~~e~~~l~~l~H~n--iv  390 (640)
                      ..+.||+|+||.||++...+|+.||||++....                        .......|..++.++.|++  +.
T Consensus        19 ~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~v~   98 (198)
T cd05144          19 LGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFPVP   98 (198)
T ss_pred             cCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCCCCC
Confidence            457899999999999998889999999865421                        0112456777888887774  44


Q ss_pred             ceeEEEEcCCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC
Q 006559          391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ  470 (640)
Q Consensus       391 ~l~~~~~~~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~  470 (640)
                      ..++    ....++||||+++++|......           .....++.+++.++.++|.   .+|+||||||+||++++
T Consensus        99 ~~~~----~~~~~lv~e~~~g~~L~~~~~~-----------~~~~~~~~~i~~~l~~lh~---~gi~H~Dl~p~Nill~~  160 (198)
T cd05144          99 KPID----WNRHAVVMEYIDGVELYRVRVL-----------EDPEEVLDEILEEIVKAYK---HGIIHGDLSEFNILVDD  160 (198)
T ss_pred             ceee----cCCceEEEEEeCCcchhhcccc-----------ccHHHHHHHHHHHHHHHHH---CCCCcCCCCcccEEEcC
Confidence            4443    2456899999999998765431           1245688899999999995   56999999999999999


Q ss_pred             CCCeEEccCCcccccCC
Q 006559          471 LGNACISDIGVHQLFHT  487 (640)
Q Consensus       471 ~~~~kl~DfGl~~~~~~  487 (640)
                      ++.++|+|||++.....
T Consensus       161 ~~~~~liDfg~~~~~~~  177 (198)
T cd05144         161 DEKIYIIDWPQMVSTDH  177 (198)
T ss_pred             CCcEEEEECCccccCCC
Confidence            99999999999866543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.62  E-value=1.6e-15  Score=151.00  Aligned_cols=232  Identities=20%  Similarity=0.286  Sum_probs=136.0

Q ss_pred             hccccccCcceEEEEEeCC-CcEEEEEEeccc-----cchHHHHHHHHHHhccCC----------CcccceeEE------
Q 006559          338 AELLGKGCVGATYKVVLDG-GDVVVVKRIRER-----KKKREVDEWLRVIGGLRH----------SNIVSIRAY------  395 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H----------~niv~l~~~------  395 (640)
                      .+.||.|+|+.||.++... ++.+|||.....     ..-+++.+|.-.+..+.+          -.++--++.      
T Consensus        17 ~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i~~~   96 (288)
T PF14531_consen   17 GRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRIPGK   96 (288)
T ss_dssp             EEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEETTS
T ss_pred             ccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEEcCC
Confidence            5679999999999999654 889999987533     122444555433333222          112211111      


Q ss_pred             ---EEcCC--------eEEEEEeccCCCCHHHhhcc---CCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCC
Q 006559          396 ---CNGKD--------ELFLVYDYLPHGSLHSLLHG---SRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHL  461 (640)
Q Consensus       396 ---~~~~~--------~~~lV~Ey~~~gsL~~~l~~---~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdl  461 (640)
                         +....        ..+++|+-+ .+||.+++..   ... ....+....++.+..|+.+.+++||+.   ++||+||
T Consensus        97 ~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~-~~~~l~~~arl~lT~Q~I~lvA~Lh~~---GlVHgdi  171 (288)
T PF14531_consen   97 PPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQ-THSPLAFAARLSLTVQMIRLVANLHSY---GLVHGDI  171 (288)
T ss_dssp             -SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTT-TSHHHHHHHHHHHHHHHHHHHHHHHHT---TEEEST-
T ss_pred             CcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhccc-ccchhHHHHHHHHHHHHHHHHHHHhhc---ceEeccc
Confidence               11111        246778876 5688887542   111 112345566778889999999999965   4999999


Q ss_pred             CCCCeEECCCCCeEEccCCcccccCCCc---cccccccCCccccCCCC-ccccCCCCCccchHHHHHHHHHHHhCCCCCC
Q 006559          462 SSSNIVVDQLGNACISDIGVHQLFHTPF---FINDAYNAPELKFNNNN-NYSQRKFWQRCDVYSFGVVLLEILTGKMAKG  537 (640)
Q Consensus       462 k~~NILl~~~~~~kl~DfGl~~~~~~~~---~~~~~y~aPE~~~~~~~-~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~  537 (640)
                      ||+|++++.+|.+.|+||+-....++..   ..+..|.+||+...... ......++.+.|.|++|+++|.|..|..||+
T Consensus       172 ~~~nfll~~~G~v~Lg~F~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~  251 (288)
T PF14531_consen  172 KPENFLLDQDGGVFLGDFSSLVRAGTRYRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFG  251 (288)
T ss_dssp             SGGGEEE-TTS-EEE--GGGEEETTEEEEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STC
T ss_pred             ceeeEEEcCCCCEEEcChHHHeecCceeeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCC
Confidence            9999999999999999998766654432   23567889986432110 0022356789999999999999999999997


Q ss_pred             CCCcchHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCC
Q 006559          538 DGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDR  592 (640)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~R  592 (640)
                      .......        .+       .....-..+++   .+.+++...++++|.+|
T Consensus       252 ~~~~~~~--------~~-------~~f~~C~~~Pe---~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  252 LSSPEAD--------PE-------WDFSRCRDMPE---PVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             CCGGGST--------SG-------GGGTTSS---H---HHHHHHHHHT-SSGGGS
T ss_pred             CCCcccc--------cc-------ccchhcCCcCH---HHHHHHHHHccCCcccC
Confidence            4321100        00       01111112333   45556667899999887

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.59  E-value=7.3e-15  Score=134.47  Aligned_cols=133  Identities=21%  Similarity=0.216  Sum_probs=111.6

Q ss_pred             ccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhccCC--CcccceeEEEEcCCeEEEEEeccCCCCHHH
Q 006559          339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRH--SNIVSIRAYCNGKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H--~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~  416 (640)
                      +.||+|.++.||++...+ ..+++|..........+..|+..++.++|  .+++++++++...+..+++|||++++.+..
T Consensus         4 ~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~~~~   82 (155)
T cd05120           4 KLLKGGLTNRVYLLGTKD-EDYVLKINPSREKGADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGETLDE   82 (155)
T ss_pred             eecccccccceEEEEecC-CeEEEEecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCeeccc
Confidence            468999999999999765 67899988665434568888888988877  588999988887788999999999877654


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      +            +......++.+++++++++|.....+++|+|++|+||+++..+.+++.|||.++.
T Consensus        83 ~------------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~  138 (155)
T cd05120          83 V------------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY  138 (155)
T ss_pred             C------------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence            3            3456677899999999999976556799999999999999989999999998864

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.58  E-value=4.2e-15  Score=142.02  Aligned_cols=135  Identities=21%  Similarity=0.270  Sum_probs=94.1

Q ss_pred             ccccccCcceEEEEEeCCCcEEEEEEeccccc----hHHH----------------------HHHHHHHhccCCCc--cc
Q 006559          339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKK----KREV----------------------DEWLRVIGGLRHSN--IV  390 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~----~~~~----------------------~~e~~~l~~l~H~n--iv  390 (640)
                      +.||+|+||.||+|...+++.||||.++....    ...+                      ..|.+.+.++.+..  +.
T Consensus         3 ~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~   82 (187)
T cd05119           3 GPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPVP   82 (187)
T ss_pred             cccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCCC
Confidence            56999999999999988899999998875311    1111                      23344444443332  33


Q ss_pred             ceeEEEEcCCeEEEEEeccCCCCHHHh-hccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC
Q 006559          391 SIRAYCNGKDELFLVYDYLPHGSLHSL-LHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD  469 (640)
Q Consensus       391 ~l~~~~~~~~~~~lV~Ey~~~gsL~~~-l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~  469 (640)
                      +.+++    ...++||||++++.+... +....      .. .....++.+++.++.++|.  ..+|+||||||+||+++
T Consensus        83 ~~~~~----~~~~lv~e~~~g~~~~~~~l~~~~------~~-~~~~~~~~~~~~~l~~lh~--~~~ivH~Dl~p~Nili~  149 (187)
T cd05119          83 KPIDL----NRHVLVMEFIGGDGIPAPRLKDVR------LL-EDPEELYDQILELMRKLYR--EAGLVHGDLSEYNILVD  149 (187)
T ss_pred             ceEec----CCCEEEEEEeCCCCccChhhhhhh------hc-ccHHHHHHHHHHHHHHHhh--ccCcCcCCCChhhEEEE
Confidence            33332    246899999999654211 11110      11 4567889999999999995  15699999999999999


Q ss_pred             CCCCeEEccCCcccccCC
Q 006559          470 QLGNACISDIGVHQLFHT  487 (640)
Q Consensus       470 ~~~~~kl~DfGl~~~~~~  487 (640)
                       ++.++++|||.+.....
T Consensus       150 -~~~~~liDfg~a~~~~~  166 (187)
T cd05119         150 -DGKVYIIDVPQAVEIDH  166 (187)
T ss_pred             -CCcEEEEECcccccccC
Confidence             89999999999976543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=1.3e-14  Score=163.79  Aligned_cols=181  Identities=19%  Similarity=0.308  Sum_probs=136.9

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhccC---CCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLR---HSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~---H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ...||+|+||.||+|...+|+.||+|.=+.....+ |.--.+++.+|+   -+-|..+...+.-.+.-++|+||.+.|+|
T Consensus       703 ~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WE-fYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~lv~ey~~~Gtl  781 (974)
T KOG1166|consen  703 SKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWE-FYICLQVMERLKPQMLPSIMHISSAHVFQNASVLVSEYSPYGTL  781 (974)
T ss_pred             EeeeccccceEEEEeecCCCcEEEEEeecCCCcee-eeehHHHHHhhchhhhcchHHHHHHHccCCcceeeeeccccccH
Confidence            45799999999999998889999999876543221 211223344444   12344444444556788999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC-------CCCCeEEccCCccccc--
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-------QLGNACISDIGVHQLF--  485 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~-------~~~~~kl~DfGl~~~~--  485 (640)
                      .+++...+     ..+|...+.++.|+++-+++||   ..+|||+||||+|.||.       +..-++|+|||-+--+  
T Consensus       782 ld~~N~~~-----~m~e~lv~~~~~qml~ive~lH---~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~l  853 (974)
T KOG1166|consen  782 LDLINTNK-----VMDEYLVMFFSCQMLRIVEHLH---AMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKL  853 (974)
T ss_pred             HHhhccCC-----CCCchhhhHHHHHHHHHHHHHH---hcceecccCCcceeEeecccCCCCcccceEEEecccceeeeE
Confidence            99998443     4789999999999999999999   56699999999999995       2346899999986432  


Q ss_pred             -CC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCC
Q 006559          486 -HT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM  534 (640)
Q Consensus       486 -~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~  534 (640)
                       ..     ..+.|..+-.+|++.       ++..+-..|-|.++-+++-|+.|+.
T Consensus       854 fp~~~~F~~~~~td~f~C~EM~~-------grpWtYq~DyfGlAa~~h~mLFG~y  901 (974)
T KOG1166|consen  854 FPDGTKFKAVWHTDLFDCIEMRE-------GRPWTYQIDYFGLAATVHVMLFGKY  901 (974)
T ss_pred             cCCCcEEeeeeccccchhHHHhc-------CCCCchhhhhHHHHHHHHHHHHHHH
Confidence             11     234577888999754       4445567999999999999999874

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.55  E-value=4.6e-14  Score=139.65  Aligned_cols=136  Identities=19%  Similarity=0.225  Sum_probs=103.8

Q ss_pred             Hhhcccc-ccCcceEEEEEeCCCcEEEEEEeccc---------------cchHHHHHHHHHHhccCCCcc--cceeEEEE
Q 006559          336 SSAELLG-KGCVGATYKVVLDGGDVVVVKRIRER---------------KKKREVDEWLRVIGGLRHSNI--VSIRAYCN  397 (640)
Q Consensus       336 ~~~~~iG-~G~fg~Vy~~~~~~~~~vavK~l~~~---------------~~~~~~~~e~~~l~~l~H~ni--v~l~~~~~  397 (640)
                      ....+|| .||.|+||++... +..++||.+...               .....+.+|++++.+++|++|  ++.+++..
T Consensus        34 ~~~~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~  112 (239)
T PRK01723         34 QQARVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARV  112 (239)
T ss_pred             hcCceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeee
Confidence            4456898 8999999999876 567788877431               112345678999999999885  66676644


Q ss_pred             cCC----eEEEEEeccCC-CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC
Q 006559          398 GKD----ELFLVYDYLPH-GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG  472 (640)
Q Consensus       398 ~~~----~~~lV~Ey~~~-gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~  472 (640)
                      ...    ..++||||+++ .+|.+++...      +++..    .+.+++.+|.+||   ..+|+||||||.|||++.++
T Consensus       113 ~~~~~~~~~~lV~e~l~G~~~L~~~l~~~------~l~~~----~~~~i~~~l~~lH---~~GI~HrDlkp~NILv~~~~  179 (239)
T PRK01723        113 VRHGLFYRADILIERIEGARDLVALLQEA------PLSEE----QWQAIGQLIARFH---DAGVYHADLNAHNILLDPDG  179 (239)
T ss_pred             eecCcceeeeEEEEecCCCCCHHHHHhcC------CCCHH----HHHHHHHHHHHHH---HCCCCCCCCCchhEEEcCCC
Confidence            322    23599999997 6999888642      23332    3568999999999   55699999999999999989


Q ss_pred             CeEEccCCccccc
Q 006559          473 NACISDIGVHQLF  485 (640)
Q Consensus       473 ~~kl~DfGl~~~~  485 (640)
                      .++|+|||.++..
T Consensus       180 ~v~LIDfg~~~~~  192 (239)
T PRK01723        180 KFWLIDFDRGELR  192 (239)
T ss_pred             CEEEEECCCcccC
Confidence            9999999998763

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=3.4e-15  Score=154.87  Aligned_cols=116  Identities=21%  Similarity=0.322  Sum_probs=98.4

Q ss_pred             eEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCC
Q 006559          401 ELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIG  480 (640)
Q Consensus       401 ~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfG  480 (640)
                      .+|+.|++|...+|.+|+...+.  ....+|...+.++.|++.|++|      .+.+|||+||.||....+..+||.|||
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~--~e~~s~s~~~~~~~q~~~~~~y------k~~ihrdlkp~nif~~~d~q~kIgDFg  401 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRT--GEERSLSLMLDIFKQIAPAVEY------KGLIHRDLKPSNIFFSDDDQLKIGDFG  401 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCc--ccccchhHHHHHHHhhccchhh------ccchhhhccccccccccchhhhhhhhh
Confidence            58899999999999999975542  2346788899999999999999      348999999999999999999999999


Q ss_pred             cccccCC------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh
Q 006559          481 VHQLFHT------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT  531 (640)
Q Consensus       481 l~~~~~~------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t  531 (640)
                      +......            ...+|..||+||       .+.+..|+.|+||||+|++|+|+++
T Consensus       402 l~ts~~~~~~~~~~~a~~t~~~gt~~YmsPE-------Qi~g~~y~~kvdIyaLGlil~EL~~  457 (516)
T KOG1033|consen  402 LVTSQDKDETVAPAAASHTQQVGTLLYMSPE-------QIRGQQYSEKVDIYALGLILAELLI  457 (516)
T ss_pred             heeecccCCcccchhhhhhhcccccccCCHH-------HHhhhhhhhhcchhhHHHHHHHHHH
Confidence            9755432            234588999999       4566788899999999999999997

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.50  E-value=1.4e-14  Score=160.45  Aligned_cols=153  Identities=24%  Similarity=0.442  Sum_probs=106.2

Q ss_pred             hhccccccCcceEEEEEeCC-CcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          337 SAELLGKGCVGATYKVVLDG-GDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ..++|..|+||.||.++++. .+.+|.| +.++.   -      +++     ||..+      .+..+.|      |+=.
T Consensus        87 ~IklisngAygavylvrh~~trqrfa~k-iNkq~---l------ilR-----nilt~------a~npfvv------gDc~  139 (1205)
T KOG0606|consen   87 TIKLISNGAYGAVYLVRHKETRQRFAMK-INKQN---L------ILR-----NILTF------AGNPFVV------GDCA  139 (1205)
T ss_pred             eeEeeccCCCCceeeeeccccccchhhc-ccccc---h------hhh-----ccccc------cCCccee------chhh
Confidence            35689999999999998654 4556763 32210   0      111     12221      1222333      4444


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC---------
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH---------  486 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~---------  486 (640)
                      ..++.-   +..+.          +++.+++|+|+   .+|+|||+||+|.+|..-|++|+.|||+.+..-         
T Consensus       140 tllk~~---g~lPv----------dmvla~Eylh~---ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~e  203 (1205)
T KOG0606|consen  140 TLLKNI---GPLPV----------DMVLAVEYLHS---YGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKE  203 (1205)
T ss_pred             hhcccC---CCCcc----------hhhHHhHhhcc---CCeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhh
Confidence            444432   22232          22778999995   459999999999999999999999999876421         


Q ss_pred             ------------CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 006559          487 ------------TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG  539 (640)
Q Consensus       487 ------------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~  539 (640)
                                  ...++|+.|+|||++       ..+.|...+|+|++|+++||.+-|+.||.++
T Consensus       204 g~I~k~t~Ef~dKqvcgTPeyiaPeVi-------lrqgygkpvdwwamGiIlyeFLVgcvpffGd  261 (1205)
T KOG0606|consen  204 GHIEKDTHEFQDKQVCGTPEYIAPEVI-------LRQGYGKPVDWWAMGIILYEFLVGCVPFFGD  261 (1205)
T ss_pred             cchHHHHHHhhhccccCCccccChhhh-------hhhccCCCccHHHHHHHHHHHheeeeeccCC
Confidence                        123679999999975       3456778999999999999999999999864

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.44  E-value=2.6e-15  Score=133.20  Aligned_cols=138  Identities=25%  Similarity=0.379  Sum_probs=119.6

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .+++.|.|++|.++..++.+..|.+|+.|++++|++...|.+++++++|+.|+++-|++. .+|..|+.++.|++|||++
T Consensus        33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlty  111 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTY  111 (264)
T ss_pred             hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccc
Confidence            478899999999999888999999999999999999999999999999999999999997 7899999999999999999


Q ss_pred             CCCCC-CCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCC
Q 006559          148 NAYEG-EIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSP  209 (640)
Q Consensus       148 N~l~g-~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~  209 (640)
                      |+++- .+| ..|..++.|+.|+|++|.|. .+|+..+.+++|+.|.+..|.+- .+|..++.
T Consensus       112 nnl~e~~lp-gnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~  171 (264)
T KOG0617|consen  112 NNLNENSLP-GNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD  171 (264)
T ss_pred             cccccccCC-cchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH
Confidence            99974 355 56677788888888888887 56666777888888888888875 56766554

>PLN03150 hypothetical protein; Provisional

Probab=99.40  E-value=1.2e-12  Score=147.32  Aligned_cols=116  Identities=32%  Similarity=0.533  Sum_probs=104.5

Q ss_pred             CCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEc
Q 006559          115 HLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNV  194 (640)
Q Consensus       115 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~l  194 (640)
                      .++.|+|++|.|+|.+|..+++|++|+.|+|++|+|+|.+| ..++.+++|+.|+|++|+|+|.+|..+..+++|+.|+|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP-~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCC-hHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            47899999999999999999999999999999999999999 77999999999999999999999999999999999999


Q ss_pred             ccCcCcccCCcccCCC----CCCCCCCCcccCCCCCCCCCC
Q 006559          195 SNNQLSGQIPAWMSPF----GGSSFAGNKNLCGRPLPSDCS  231 (640)
Q Consensus       195 s~N~l~g~ip~~~~~~----~~~~~~gn~~lcg~~~~~~c~  231 (640)
                      ++|+|+|.+|..+...    ....+.+|+.+|+.|....|.
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            9999999999987543    245678999999876444463

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.38  E-value=1.3e-12  Score=127.72  Aligned_cols=192  Identities=21%  Similarity=0.356  Sum_probs=130.6

Q ss_pred             HhccCCCcccceeEEEEcC-----CeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCC
Q 006559          381 IGGLRHSNIVSIRAYCNGK-----DELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAH  455 (640)
Q Consensus       381 l~~l~H~niv~l~~~~~~~-----~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~  455 (640)
                      |-.+.|.|||++..|+.+.     .+..++.|||..|++..+|++.+... ..+......+++.||..||.|||+. .++
T Consensus       121 llqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~-~a~~~~~wkkw~tqIlsal~yLhs~-~Pp  198 (458)
T KOG1266|consen  121 LLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQ-KALFQKAWKKWCTQILSALSYLHSC-DPP  198 (458)
T ss_pred             HHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhh-hhhhHHHHHHHHHHHHhhhhhhhcc-CCc
Confidence            4456799999999988653     45788999999999999998654322 2355666778999999999999986 688


Q ss_pred             ceecCCCCCCeEECCCCCeEEccCCcccccCC-----------CccccccccCCccccCCCCccccCCCCCccchHHHHH
Q 006559          456 LFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGV  524 (640)
Q Consensus       456 ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGv  524 (640)
                      |+|+++..+.|++..+|-+|+.--.- .....           -.....+|.+||       +......+..+|||+||+
T Consensus       199 iihgnlTc~tifiq~ngLIkig~~ap-~s~h~s~~~~~~~Ek~~~~~~~g~~a~~-------sg~~tn~~~a~dIy~fgm  270 (458)
T KOG1266|consen  199 IIHGNLTCDTIFIQHNGLIKIGSVAP-DSTHPSVNSTREAEKSVNTSLPGFSAPE-------SGTTTNTTGASDIYKFGM  270 (458)
T ss_pred             cccCCcchhheeecCCceEEecccCc-cccchhhhhhhHhhhhccccCCccccCC-------cCcccccccchhhhhhhH
Confidence            99999999999999999888743211 11110           112345788998       455556678899999999


Q ss_pred             HHHHHHhCCCCCCCCCcchHHHHHHhhcccccc-cccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 006559          525 VLLEILTGKMAKGDGELGIVKWVQMMGQDESAW-EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVH  599 (640)
Q Consensus       525 vl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~  599 (640)
                      ..+||..+..-....+....  +     ++... -++.    .....      =...+..|++..|..||+|++..
T Consensus       271 cAlemailEiq~tnseS~~~--~-----ee~ia~~i~~----len~l------qr~~i~kcl~~eP~~rp~ar~ll  329 (458)
T KOG1266|consen  271 CALEMAILEIQSTNSESKVE--V-----EENIANVIIG----LENGL------QRGSITKCLEGEPNGRPDARLLL  329 (458)
T ss_pred             HHHHHHHheeccCCCcceee--h-----hhhhhhheee----ccCcc------ccCcCcccccCCCCCCcchhhhh
Confidence            99999988754322111100  0     00000 0000    00000      01244569999999999999875

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.37  E-value=2.2e-12  Score=138.74  Aligned_cols=138  Identities=20%  Similarity=0.221  Sum_probs=95.3

Q ss_pred             ccccccCcceEEEEEeCCCcEEEEEEeccccch--------------------------------H----------HHHH
Q 006559          339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKK--------------------------------R----------EVDE  376 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~--------------------------------~----------~~~~  376 (640)
                      +.||.|++|.||+|++.+|+.||||+.+....+                                +          ++..
T Consensus       123 ~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~~  202 (437)
T TIGR01982       123 KPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLRR  202 (437)
T ss_pred             cceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHHH
Confidence            569999999999999999999999998653100                                0          1222


Q ss_pred             HHHHHhcc----CCCcccceeEEEEc-CCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHH-HHHHhhc
Q 006559          377 WLRVIGGL----RHSNIVSIRAYCNG-KDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAK-GLAFLHG  450 (640)
Q Consensus       377 e~~~l~~l----~H~niv~l~~~~~~-~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~-gL~yLH~  450 (640)
                      |.+.+.++    +|.+-+.+-.++.+ ....+|||||+++++|.++......    ..   .+.+++..++. .+..+| 
T Consensus       203 Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~----~~---~~~~ia~~~~~~~l~ql~-  274 (437)
T TIGR01982       203 EAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEA----GL---DRKALAENLARSFLNQVL-  274 (437)
T ss_pred             HHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhc----CC---CHHHHHHHHHHHHHHHHH-
Confidence            33333322    23333333333322 3457999999999999887653211    12   23456666665 467788 


Q ss_pred             CCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       451 ~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                        ..+++|+|++|.||+++.++.+++.|||++..+.
T Consensus       275 --~~g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~  308 (437)
T TIGR01982       275 --RDGFFHADLHPGNIFVLKDGKIIALDFGIVGRLS  308 (437)
T ss_pred             --hCCceeCCCCcccEEECCCCcEEEEeCCCeeECC
Confidence              4569999999999999999999999999987764

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.34  E-value=1.1e-13  Score=153.53  Aligned_cols=237  Identities=20%  Similarity=0.240  Sum_probs=164.1

Q ss_pred             ccccccCcceEEEEEeCC--CcEEEEEEecccc-c---hHHHHHHHHHHhccC-CCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKGCVGATYKVVLDG--GDVVVVKRIRERK-K---KREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~--~~~vavK~l~~~~-~---~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      +.||+|.|+.|-......  ...+|+|.+.... .   ......|..+-..+. |.|++++++.....+..++++||..+
T Consensus        26 ~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~~~~~s~g  105 (601)
T KOG0590|consen   26 RSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLLSLSYSDG  105 (601)
T ss_pred             ccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCcccccccCcccc
Confidence            348999999998776433  3446666665432 1   222334555666666 99999999999999999999999999


Q ss_pred             CCHHHhh-ccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC-CeEEccCCcccccCC--
Q 006559          412 GSLHSLL-HGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG-NACISDIGVHQLFHT--  487 (640)
Q Consensus       412 gsL~~~l-~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~-~~kl~DfGl~~~~~~--  487 (640)
                      |++.+-+ +....    ..+......+..|+..++.|+|.  ..++.|||+||+|.+++..+ ..|++|||++..+..  
T Consensus       106 ~~~f~~i~~~~~~----~~~~~~~~~~~~ql~s~l~~~H~--~~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~~  179 (601)
T KOG0590|consen  106 GSLFSKISHPDST----GTSSSSASRYLPQLNSGLSYLHP--ENGVTHRDIKPSNSLLDESGSALKIADFGLATAYRNKN  179 (601)
T ss_pred             cccccccccCCcc----CCCCcchhhhhhhhccCccccCc--ccccccCCCCCccchhccCCCcccCCCchhhccccccC
Confidence            9998888 33220    12334556688999999999994  23499999999999999999 999999999876533  


Q ss_pred             -------Cccc-cccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc---hHHHHHHhhccccc
Q 006559          488 -------PFFI-NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG---IVKWVQMMGQDESA  556 (640)
Q Consensus       488 -------~~~~-~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~---~~~~~~~~~~~~~~  556 (640)
                             ...+ +..|+|||...+.      ....+..|+||.|+++.-+++|..|+......   ...|.......   
T Consensus       180 g~~~~~~~~~g~s~~y~a~E~~~~~------~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~---  250 (601)
T KOG0590|consen  180 GAERSLKDRCGSSPPYGAPEHLSGK------AYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSWKSNKGRF---  250 (601)
T ss_pred             CcceeeecccCCCCCCCCcccccch------hhcCCCcccccccccccccccCCCCccccccccccceeeccccccc---
Confidence                   2345 8889999975332      23356789999999999999999998742211   12222211000   


Q ss_pred             ccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 006559          557 WEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVH  599 (640)
Q Consensus       557 ~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~  599 (640)
                            .....   .......+++...++..+|..|.+.+++.
T Consensus       251 ------~~~~~---~~~~~~~~~~l~k~l~~~~~~r~s~~~~~  284 (601)
T KOG0590|consen  251 ------TQLPW---NSISDQAHDLLHKILKENPSNRLSIEELK  284 (601)
T ss_pred             ------ccCcc---ccCChhhhhcccccccCCchhcccccccc
Confidence                  00011   11122344555567778999999877664

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.26  E-value=1.2e-13  Score=122.60  Aligned_cols=138  Identities=24%  Similarity=0.382  Sum_probs=123.6

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccc-cCCccCCCCCCCCEEEccc
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTG-TFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .+..|++.+|++...+..++.|+.|+.|+++-|++.-.|..|++++.|+.|||..|+++. .+|..|..+..|+.|+|+.
T Consensus        57 nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d  136 (264)
T KOG0617|consen   57 NLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD  136 (264)
T ss_pred             hhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC
Confidence            345567888888888889999999999999999999988899999999999999999975 4899999999999999999


Q ss_pred             CCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCC
Q 006559          148 NAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPF  210 (640)
Q Consensus       148 N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~  210 (640)
                      |.|. .+| .+++++++||.|.+.+|.+- ++|...+.+..|++|.+.+|+++ .+|..++++
T Consensus       137 ndfe-~lp-~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  137 NDFE-ILP-PDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             CCcc-cCC-hhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence            9998 677 77999999999999999987 67888889999999999999998 667666544

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.23  E-value=6.1e-11  Score=111.15  Aligned_cols=129  Identities=16%  Similarity=0.107  Sum_probs=94.1

Q ss_pred             ccccccCcceEEEEEeCCCcEEEEEEecccc-chHHHHHHHHHHhccCCCccc-ceeEEEEcCCeEEEEEeccCCCCHHH
Q 006559          339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERK-KKREVDEWLRVIGGLRHSNIV-SIRAYCNGKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~-~~~~~~~e~~~l~~l~H~niv-~l~~~~~~~~~~~lV~Ey~~~gsL~~  416 (640)
                      +.++.|.++.||++... +..+++|...... ....+..|++.++.+.+.+++ +++++.  ....++||||+++.++.+
T Consensus         4 ~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~~~~lv~e~i~G~~l~~   80 (170)
T cd05151           4 SPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTELLINRENEAENSKLAAEAGIGPKLYYFD--PETGVLITEFIEGSELLT   80 (170)
T ss_pred             eecCCcccCceEEEEEC-CeEEEEEeCCCCcccccCHHHHHHHHHHHHHhCCCCceEEEe--CCCCeEEEEecCCCcccc
Confidence            45788999999999876 6678999876553 233467788888877665554 344443  334589999999987754


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCC--CCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN--KAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~--~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      . .         .   ....++.+++++|+.||...  ...++|+|++|.||+++ ++.++++|||.+..
T Consensus        81 ~-~---------~---~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151          81 E-D---------F---SDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             c-c---------c---cCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence            3 0         0   11235678999999999654  23369999999999999 66899999998753

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.23  E-value=1.5e-11  Score=133.76  Aligned_cols=137  Identities=15%  Similarity=0.132  Sum_probs=86.7

Q ss_pred             ccccccCcceEEEEEeCC-CcEEEEEEeccccc------------------------------------hHH------HH
Q 006559          339 ELLGKGCVGATYKVVLDG-GDVVVVKRIRERKK------------------------------------KRE------VD  375 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~~~------------------------------------~~~------~~  375 (640)
                      +.||.|++|.||+|++++ |+.||||+++....                                    .+.      +.
T Consensus       125 ~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~~ElD~~  204 (537)
T PRK04750        125 KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLHDELDLM  204 (537)
T ss_pred             hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHhhCHH
Confidence            479999999999999987 99999999874310                                    001      12


Q ss_pred             HHHHHHhcc----CCCcccceeEEEEc-CCeEEEEEeccCCCCHHHh--hccCCCCCCCCcCHHHHHHHHHHHHHHHHHh
Q 006559          376 EWLRVIGGL----RHSNIVSIRAYCNG-KDELFLVYDYLPHGSLHSL--LHGSRGPGRMPVDWNKRLKLASDSAKGLAFL  448 (640)
Q Consensus       376 ~e~~~l~~l----~H~niv~l~~~~~~-~~~~~lV~Ey~~~gsL~~~--l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yL  448 (640)
                      .|+.-+.++    .+.+.+.+-.++.+ ....+|||||++++.+.++  +.... ..+..+.......++.|+       
T Consensus       205 ~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g-~d~~~la~~~v~~~~~Qi-------  276 (537)
T PRK04750        205 REAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAG-TDMKLLAERGVEVFFTQV-------  276 (537)
T ss_pred             HHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcC-CCHHHHHHHHHHHHHHHH-------
Confidence            222222222    23333444344433 3457899999999999874  22211 011112222222233333       


Q ss_pred             hcCCCCCceecCCCCCCeEECCCC----CeEEccCCcccccC
Q 006559          449 HGYNKAHLFHGHLSSSNIVVDQLG----NACISDIGVHQLFH  486 (640)
Q Consensus       449 H~~~~~~ivHrdlk~~NILl~~~~----~~kl~DfGl~~~~~  486 (640)
                      +   ..+++|+|+||.||+++.++    .+++.|||+...+.
T Consensus       277 f---~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~  315 (537)
T PRK04750        277 F---RDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLN  315 (537)
T ss_pred             H---hCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECC
Confidence            2   34599999999999999888    99999999987654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.22  E-value=9.4e-13  Score=137.82  Aligned_cols=132  Identities=31%  Similarity=0.404  Sum_probs=95.6

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEccccccccc-CCccCCCCCCCCEEEcc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGT-FPSGVSSLRHLRRVDLS  146 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~-~p~~~~~l~~L~~L~Ls  146 (640)
                      .+++.|.|+...|.-.++.++.|.+|+.|++++|+|....-.++.++.|+.+++.+|+|... ||+.+..|..|+.||||
T Consensus        32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLS  111 (1255)
T KOG0444|consen   32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLS  111 (1255)
T ss_pred             hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecc
Confidence            36888888888887777788888888888888888776555677777777777777777433 67777777777777777


Q ss_pred             cCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcc
Q 006559          147 HNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSG  201 (640)
Q Consensus       147 ~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g  201 (640)
                      +|+|. ..| ..+.+..++-+|+||+|++...+.+.+.++..|..||||+|++.-
T Consensus       112 hNqL~-EvP-~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~  164 (1255)
T KOG0444|consen  112 HNQLR-EVP-TNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM  164 (1255)
T ss_pred             hhhhh-hcc-hhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh
Confidence            77776 566 556666777777777777765555556666677777777777763

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=3.4e-11  Score=127.84  Aligned_cols=242  Identities=21%  Similarity=0.179  Sum_probs=161.6

Q ss_pred             ChHHHHHHhhccccc--cCcceEEEEEe---CCCcEEEEEEeccc----cchHHHHHHHHHHhcc-CCCcccceeEEEEc
Q 006559          329 NVGDLLKSSAELLGK--GCVGATYKVVL---DGGDVVVVKRIRER----KKKREVDEWLRVIGGL-RHSNIVSIRAYCNG  398 (640)
Q Consensus       329 ~~~~~~~~~~~~iG~--G~fg~Vy~~~~---~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~  398 (640)
                      +..+.......-+|+  |.+|.||.+..   .++..+|+|+-+..    .....-.+|+....++ .|+|.++....+.+
T Consensus       110 s~~~~~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~  189 (524)
T KOG0601|consen  110 SFFDQRFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEG  189 (524)
T ss_pred             chhhhhcccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCccccc
Confidence            344444455667899  99999999886   45677888873321    1222222333333344 49999998888998


Q ss_pred             CCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHH----HHHHhhcCCCCCceecCCCCCCeEECCC-CC
Q 006559          399 KDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAK----GLAFLHGYNKAHLFHGHLSSSNIVVDQL-GN  473 (640)
Q Consensus       399 ~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~----gL~yLH~~~~~~ivHrdlk~~NILl~~~-~~  473 (640)
                      .+..|+=+|++. .+|.++.+....    .++......+..+...    ||.++|+.   .++|-|+||.||++..+ ..
T Consensus       190 ~~~lfiqtE~~~-~sl~~~~~~~~~----~~p~~~l~~~~~~~~~~~~~al~~~hs~---~~~~~~~kp~~i~~~~~~~s  261 (524)
T KOG0601|consen  190 SGILFIQTELCG-ESLQSYCHTPCN----FLPDNLLWNSLRDWLSRDVTALSHLHSN---NIVHDDLKPANIFTTSDWTS  261 (524)
T ss_pred             CCcceeeecccc-chhHHhhhcccc----cCCchhhhhHHhhhhhcccccccccCCC---cccccccchhheecccccce
Confidence            999999999885 688888765432    2444455556666666    99999954   59999999999999988 88


Q ss_pred             eEEccCCcccccCCCc-----------cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc
Q 006559          474 ACISDIGVHQLFHTPF-----------FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG  542 (640)
Q Consensus       474 ~kl~DfGl~~~~~~~~-----------~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~  542 (640)
                      .++.|||+...+....           .+...|++||+.        ...++..+|+||+|.+..|..++..++..+.  
T Consensus       262 ~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~--------~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~--  331 (524)
T KOG0601|consen  262 CKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELL--------NGLATFASDIFSLGEVILEAILGSHLPSVGK--  331 (524)
T ss_pred             eecCCcceeEEccCCccccceeeeecCCCCceEeChhhh--------ccccchHhhhcchhhhhHhhHhhcccccCCC--
Confidence            9999999977664322           224469999953        3456778999999999999999876553210  


Q ss_pred             hHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 006559          543 IVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVH  599 (640)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~  599 (640)
                      ...|.+           ++...+.++....-..++..+...+++.+|..|++.+++.
T Consensus       332 ~~~W~~-----------~r~~~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~  377 (524)
T KOG0601|consen  332 NSSWSQ-----------LRQGYIPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILT  377 (524)
T ss_pred             CCCccc-----------cccccCchhhhcCcchhhhhHHHHhcCcchhhhhHHHHHh
Confidence            011211           1111111111111122333366778999999999876653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.15  E-value=4.7e-11  Score=124.68  Aligned_cols=141  Identities=26%  Similarity=0.277  Sum_probs=109.7

Q ss_pred             cEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           69 RVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .+..|++++|.|+... ..|-+|++|+.++|..|.|+..|...+...+|+.|+|.+|.++..-..++.-++.|+.||||.
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            5667999999998754 678899999999999999987654444455688899999988877777788888888888888


Q ss_pred             CCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCC
Q 006559          148 NAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPF  210 (640)
Q Consensus       148 N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~  210 (640)
                      |.++ .||...|..-.++++|+|++|+++..-...|.++.+|..|.|++|+++-..+..|.++
T Consensus       159 N~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L  220 (873)
T KOG4194|consen  159 NLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRL  220 (873)
T ss_pred             chhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhc
Confidence            8887 6776667666788888888888887666777778888888888888884333344433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.13  E-value=2.7e-11  Score=126.42  Aligned_cols=141  Identities=28%  Similarity=0.325  Sum_probs=107.0

Q ss_pred             CCcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCC-CCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEE
Q 006559           67 THRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSN-LNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVD  144 (640)
Q Consensus        67 ~~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  144 (640)
                      ++|++.|+|.+|-++... +.+..++.|+.||||.|.|+..+ +.+..-.++++|+|++|+++..--..|.+|.+|..|.
T Consensus       124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk  203 (873)
T KOG4194|consen  124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK  203 (873)
T ss_pred             ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence            468888888888776543 67888999999999999998764 3666667899999999999877777888999999999


Q ss_pred             cccCCCCCCCCchhcCCCCCCcEEEccCCcceecccC------------------------CcCCCCCCcEEEcccCcCc
Q 006559          145 LSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYS------------------------VNSSSRSILDFNVSNNQLS  200 (640)
Q Consensus       145 Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~------------------------~~~~~~~L~~l~ls~N~l~  200 (640)
                      |++|.++ .+|...|.+|++|+.|+|..|++.-.--.                        .|-.+.+++.|+|+.|+++
T Consensus       204 LsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~  282 (873)
T KOG4194|consen  204 LSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ  282 (873)
T ss_pred             cccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence            9999998 68878888899999998888887532112                        2333455666666666666


Q ss_pred             ccCCcccC
Q 006559          201 GQIPAWMS  208 (640)
Q Consensus       201 g~ip~~~~  208 (640)
                      ..--.|+.
T Consensus       283 ~vn~g~lf  290 (873)
T KOG4194|consen  283 AVNEGWLF  290 (873)
T ss_pred             hhhccccc
Confidence            54444543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.12  E-value=4.1e-12  Score=127.04  Aligned_cols=128  Identities=26%  Similarity=0.356  Sum_probs=98.3

Q ss_pred             EEEEEeCCCCCCCC------------------------chhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEccccc
Q 006559           70 VIKLVLEDLDLTGP------------------------AEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNR  125 (640)
Q Consensus        70 v~~l~l~~~~l~g~------------------------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~  125 (640)
                      |+.++++.|.+.-.                        +..++.+++|+.|+|++|.+...|.+++.+..|+.||+|+|+
T Consensus       390 Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr  469 (565)
T KOG0472|consen  390 VTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR  469 (565)
T ss_pred             eEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccc
Confidence            88888888776542                        234566777777777777777777677777777777777777


Q ss_pred             ccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCc
Q 006559          126 FTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS  200 (640)
Q Consensus       126 l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~  200 (640)
                      |. .+|..+..+..|+.+-.++|++. .+++..+.++.+|..|||.+|.+. .+|+.++++.+|+.|++.+|.|.
T Consensus       470 Fr-~lP~~~y~lq~lEtllas~nqi~-~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  470 FR-MLPECLYELQTLETLLASNNQIG-SVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cc-cchHHHhhHHHHHHHHhcccccc-ccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            75 56666666666666666667775 566566889999999999999998 68888999999999999999998

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.09  E-value=2.3e-12  Score=128.83  Aligned_cols=145  Identities=26%  Similarity=0.332  Sum_probs=85.4

Q ss_pred             EEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCC
Q 006559           72 KLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYE  151 (640)
Q Consensus        72 ~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~  151 (640)
                      .++..+|+++..++.+.++.+|..|++.+|.+...++..-+|+.|++||..+|-+. .+|+.++.|.+|..|+|.+|++.
T Consensus       141 dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~  219 (565)
T KOG0472|consen  141 DLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR  219 (565)
T ss_pred             hhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc
Confidence            34445555555555555555555555555555555444333555555555555543 45555555555555555555443


Q ss_pred             C---------------------CCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCC
Q 006559          152 G---------------------EIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPF  210 (640)
Q Consensus       152 g---------------------~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~  210 (640)
                      -                     .+|.+....+++|.+|||.+|+++ +.|....-+++|..||+|+|.|++ +|..++++
T Consensus       220 ~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl  297 (565)
T KOG0472|consen  220 FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSLGNL  297 (565)
T ss_pred             cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCcccccc
Confidence            1                     355344457888888888888887 466666667888888899888885 56666655


Q ss_pred             --CCCCCCCCc
Q 006559          211 --GGSSFAGNK  219 (640)
Q Consensus       211 --~~~~~~gn~  219 (640)
                        ......|||
T Consensus       298 hL~~L~leGNP  308 (565)
T KOG0472|consen  298 HLKFLALEGNP  308 (565)
T ss_pred             eeeehhhcCCc
Confidence              223334554

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.08  E-value=8.8e-10  Score=108.02  Aligned_cols=140  Identities=23%  Similarity=0.298  Sum_probs=107.7

Q ss_pred             ccccccCcceEEEEEeCCCcEEEEEEecccc---chHHHHHHHHHHhccCCC--cccceeEEEEcC---CeEEEEEeccC
Q 006559          339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERK---KKREVDEWLRVIGGLRHS--NIVSIRAYCNGK---DELFLVYDYLP  410 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~--niv~l~~~~~~~---~~~~lV~Ey~~  410 (640)
                      +.|+.|.++.||++...+|..+++|......   ....+..|.++++.+++.  ++.+++.+....   +..++||||++
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~   83 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVD   83 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeC
Confidence            4589999999999998777889999876543   345678888888888763  456677776654   26789999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCC--------------------------------------
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN--------------------------------------  452 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~--------------------------------------  452 (640)
                      +.++.+.+..      ..++...+..++.+++++|.+||+..                                      
T Consensus        84 G~~l~~~~~~------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (223)
T cd05154          84 GRVLRDRLLR------PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAM  157 (223)
T ss_pred             CEecCCCCCC------CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHH
Confidence            9888765531      13566777788888888888888531                                      


Q ss_pred             ---------------CCCceecCCCCCCeEECC--CCCeEEccCCcccc
Q 006559          453 ---------------KAHLFHGHLSSSNIVVDQ--LGNACISDIGVHQL  484 (640)
Q Consensus       453 ---------------~~~ivHrdlk~~NILl~~--~~~~kl~DfGl~~~  484 (640)
                                     ...++|+|+.+.||+++.  ++.+.|+||+.+..
T Consensus       158 ~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         158 ERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             HHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence                           234799999999999998  66788999987754

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.06  E-value=2e-09  Score=115.48  Aligned_cols=161  Identities=17%  Similarity=0.271  Sum_probs=117.8

Q ss_pred             eCCCcEEEEEEeccccc--hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHHhhccCCCCCCCCcCH
Q 006559          354 LDGGDVVVVKRIRERKK--KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDW  431 (640)
Q Consensus       354 ~~~~~~vavK~l~~~~~--~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~  431 (640)
                      ..++.+|.|...+....  .....+.++.++.+|||||++++..+..++..|||+|-+.  -|..++...        ..
T Consensus        34 k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~l--------~~  103 (690)
T KOG1243|consen   34 KADGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKEL--------GK  103 (690)
T ss_pred             eccCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHHh--------HH
Confidence            45677888888776544  3345666788999999999999999999999999999873  566666543        22


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC------ccccccccCCccccCCC
Q 006559          432 NKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP------FFINDAYNAPELKFNNN  505 (640)
Q Consensus       432 ~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~------~~~~~~y~aPE~~~~~~  505 (640)
                      ....-.+.||+.||.|||+  +.+++|++|.-..|+++..|+-||++|-+.......      ...-..|..|+..    
T Consensus       104 ~~v~~Gl~qIl~AL~FL~~--d~~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~----  177 (690)
T KOG1243|consen  104 EEVCLGLFQILAALSFLND--DCNLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEI----  177 (690)
T ss_pred             HHHHHHHHHHHHHHHHHhc--cCCeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCcccccchhhhcccChhhc----
Confidence            3444467899999999996  447999999999999999999999999876443211      1112234555521    


Q ss_pred             CccccCCCCCccchHHHHHHHHHHHhCCCC
Q 006559          506 NNYSQRKFWQRCDVYSFGVVLLEILTGKMA  535 (640)
Q Consensus       506 ~~~~~~~~~~k~DV~SfGvvl~el~tg~~p  535 (640)
                         ..  -+-..|.|-|||++||++.|..+
T Consensus       178 ---~~--s~~s~D~~~Lg~li~el~ng~~~  202 (690)
T KOG1243|consen  178 ---DP--SEWSIDSWGLGCLIEELFNGSLL  202 (690)
T ss_pred             ---Cc--cccchhhhhHHHHHHHHhCcccC
Confidence               10  00235999999999999999443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.06  E-value=9e-12  Score=130.63  Aligned_cols=157  Identities=24%  Similarity=0.364  Sum_probs=132.9

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      +.+..+||+.|+|.-.++.+-++.+|+.|+||+|.|+......+.|.+|++|+||.|+|+ .+|..+.+|+.|+.|.+.+
T Consensus       222 ~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~  300 (1255)
T KOG0444|consen  222 HNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANN  300 (1255)
T ss_pred             hhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhcc
Confidence            457788999999998888999999999999999999988777888999999999999998 6899999999999999999


Q ss_pred             CCCCC-CCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccC---CCCCCCCCCCcccCC
Q 006559          148 NAYEG-EIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMS---PFGGSSFAGNKNLCG  223 (640)
Q Consensus       148 N~l~g-~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~---~~~~~~~~gn~~lcg  223 (640)
                      |+|+- .|| +.++.|.+|+++.+++|.+. .+|..+..+..|+.|.|+.|++- ++|+.+-   .+.......|++|.-
T Consensus       301 NkL~FeGiP-SGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVM  377 (1255)
T KOG0444|consen  301 NKLTFEGIP-SGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVM  377 (1255)
T ss_pred             CcccccCCc-cchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccC
Confidence            98862 377 78999999999999999886 67888888999999999999986 6787653   344555667888877


Q ss_pred             CCCCC
Q 006559          224 RPLPS  228 (640)
Q Consensus       224 ~~~~~  228 (640)
                      +|-|.
T Consensus       378 PPKP~  382 (1255)
T KOG0444|consen  378 PPKPN  382 (1255)
T ss_pred             CCCcc
Confidence            76553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.03  E-value=9.2e-11  Score=117.42  Aligned_cols=68  Identities=22%  Similarity=0.292  Sum_probs=49.3

Q ss_pred             CCCCCCC---CceEecCC---------CCcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCc
Q 006559           52 DPCFDSW---RGVTCNPS---------THRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLK  117 (640)
Q Consensus        52 ~~c~~~w---~gv~C~~~---------~~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~  117 (640)
                      .+|.|+-   .-|.|..+         ....|.|.|..|+++..+ ..|+.+.+|+.||||+|.|+...| .|..+++|.
T Consensus        39 ~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~  118 (498)
T KOG4237|consen   39 APCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLL  118 (498)
T ss_pred             CCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhh
Confidence            4565555   55778754         236789999999998754 789999999999999999986544 344444443


Q ss_pred             EE
Q 006559          118 HL  119 (640)
Q Consensus       118 ~L  119 (640)
                      .|
T Consensus       119 ~L  120 (498)
T KOG4237|consen  119 SL  120 (498)
T ss_pred             HH
Confidence            33

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.02  E-value=2.4e-10  Score=121.39  Aligned_cols=238  Identities=17%  Similarity=0.174  Sum_probs=158.3

Q ss_pred             hccccccCcceEEEEEe--CCCcEEEEEEecccc--chHHH--HHHHHHHhc-cCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVL--DGGDVVVVKRIRERK--KKREV--DEWLRVIGG-LRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~--~~~~~vavK~l~~~~--~~~~~--~~e~~~l~~-l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ...||.|.|+.||+...  .++..+++|.+.+..  ...++  ..|+-+... ..|.+++.+...+...+..|+-.||++
T Consensus       270 v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~ip~e~~~  349 (524)
T KOG0601|consen  270 VSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGYIPLEFCE  349 (524)
T ss_pred             eEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccccccccCchhhhc
Confidence            34699999999998874  467789999887652  11111  122222222 258899998888888888889999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC-CCeEEccCCcccccC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL-GNACISDIGVHQLFH---  486 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~-~~~kl~DfGl~~~~~---  486 (640)
                      ++++...+.-.     ..++...++++..|++.++.++|   .+.++|+|+||+||++..+ +..++.|||++..+.   
T Consensus       350 ~~s~~l~~~~~-----~~~d~~~~~~~~~q~~~~l~~i~---s~~~~~~d~~psni~i~~~~~~~~~~~~~~~t~~~~~~  421 (524)
T KOG0601|consen  350 GGSSSLRSVTS-----QMLDEDPRLRLTAQILTALNVIH---SKLFVHLDVKPSNILISNDGFFSKLGDFGCWTRLAFSS  421 (524)
T ss_pred             CcchhhhhHHH-----HhcCcchhhhhHHHHHhcccccc---chhhhcccccccceeeccchhhhhccccccccccceec
Confidence            99887665221     24667788899999999999999   5669999999999999886 888999999986432   


Q ss_pred             CCcccccccc-CCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          487 TPFFINDAYN-APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       487 ~~~~~~~~y~-aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                      .......++. ..|++..      ...+-.+.|++|||.-+.|.+++..--...    ..|..          +......
T Consensus       422 ~~~~~~~r~~p~~~~~~e------~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~----~~~~~----------i~~~~~p  481 (524)
T KOG0601|consen  422 GVFHHIDRLYPIAEILLE------DYPHLSKADIFSLGLSVDEAITGSPLSESG----VQSLT----------IRSGDTP  481 (524)
T ss_pred             ccccccccccccchhhcc------ccccccccccccccccccccccCcccCccc----cccee----------eeccccc
Confidence            2222233444 2554322      234457899999999999999987533211    11111          1111111


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                      ..+....+   +..++..+..+++..||.+.+.....+..+
T Consensus       482 ~~~~~~~~---~q~~~kv~~~~~~~~~~l~~~l~~~~~~~~  519 (524)
T KOG0601|consen  482 NLPGLKLQ---LQVLLKVMINPDRKRRPSAVELSLHSEFYR  519 (524)
T ss_pred             CCCchHHh---hhhhhhhhcCCccccchhhhhhcccchhhh
Confidence            11221222   333344478899999999888766655444

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.02  E-value=2e-09  Score=101.96  Aligned_cols=133  Identities=11%  Similarity=0.129  Sum_probs=93.3

Q ss_pred             cccccCcceEEEEEeCC-------CcEEEEEEeccc----c--------c------------hHHH----HHHHHHHhcc
Q 006559          340 LLGKGCVGATYKVVLDG-------GDVVVVKRIRER----K--------K------------KREV----DEWLRVIGGL  384 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~~-------~~~vavK~l~~~----~--------~------------~~~~----~~e~~~l~~l  384 (640)
                      .||.|.=+.||.|.-.+       +..+|||..+..    +        .            .+.+    ++|.+.|.++
T Consensus         4 ~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~rl   83 (197)
T cd05146           4 CISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKRM   83 (197)
T ss_pred             ccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            58999999999998543       478999987421    0        0            1122    2678888877


Q ss_pred             CC--CcccceeEEEEcCCeEEEEEeccCCCCHHH-hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHh-hcCCCCCceecC
Q 006559          385 RH--SNIVSIRAYCNGKDELFLVYDYLPHGSLHS-LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFL-HGYNKAHLFHGH  460 (640)
Q Consensus       385 ~H--~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~-~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yL-H~~~~~~ivHrd  460 (640)
                      .-  -++.+.+++    ..-+|||||+.++.+.. .++..      .++......+..+++.+|.+| |   +.+|||+|
T Consensus        84 ~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd~------~~~~~~~~~i~~~i~~~l~~l~H---~~glVHGD  150 (197)
T cd05146          84 QKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKDA------KLNDEEMKNAYYQVLSMMKQLYK---ECNLVHAD  150 (197)
T ss_pred             HHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhcc------ccCHHHHHHHHHHHHHHHHHHHH---hCCeecCC
Confidence            54  345555654    45789999997654421 22211      234445567788999999999 6   45699999


Q ss_pred             CCCCCeEECCCCCeEEccCCcccccC
Q 006559          461 LSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       461 lk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      |++.|||++ ++.+.|+|||-+-...
T Consensus       151 Ls~~NIL~~-~~~v~iIDF~qav~~~  175 (197)
T cd05146         151 LSEYNMLWH-DGKVWFIDVSQSVEPT  175 (197)
T ss_pred             CCHHHEEEE-CCcEEEEECCCceeCC
Confidence            999999997 4679999999876554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.97  E-value=1.9e-10  Score=106.77  Aligned_cols=109  Identities=30%  Similarity=0.408  Sum_probs=30.6

Q ss_pred             ccCCCCCCEEeCCCCcCCCCCCCCC-CCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhc-CCCCC
Q 006559           87 LSRLTQLRLLSLKNNLLSSSNLNLS-SWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTEL-TRLPN  164 (640)
Q Consensus        87 l~~l~~L~~L~Ls~N~l~~~~~~~~-~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~-~~l~~  164 (640)
                      +.+...++.|+|++|.|+.. ..++ .+.+|+.||||+|.++. ++ .+..++.|+.|+|++|.++. ++ +.+ ..+|+
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~-~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-IS-EGLDKNLPN   89 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--C-HHHHHH-TT
T ss_pred             cccccccccccccccccccc-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cc-cchHHhCCc
Confidence            33444566677777776653 2343 45667777777777763 22 35566777777777777763 43 223 34667


Q ss_pred             CcEEEccCCcceecc-cCCcCCCCCCcEEEcccCcCc
Q 006559          165 LLTLRLEDNRFTGTL-YSVNSSSRSILDFNVSNNQLS  200 (640)
Q Consensus       165 L~~L~L~~N~l~g~~-~~~~~~~~~L~~l~ls~N~l~  200 (640)
                      |+.|+|++|++...- -..+..+++|+.|+|.+|.++
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            777777777765421 122445666777777777665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.96  E-value=7e-11  Score=129.73  Aligned_cols=126  Identities=29%  Similarity=0.393  Sum_probs=104.2

Q ss_pred             cEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcc
Q 006559           69 RVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS  146 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  146 (640)
                      .+..|.|.+|.|+... +.+-+..+|++|+|++|+|...+. .+.+|..|+.|+||+|+|+ .+|..+.++..|++|...
T Consensus       360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ah  438 (1081)
T KOG0618|consen  360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAH  438 (1081)
T ss_pred             HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhc
Confidence            4566777778887765 778889999999999999988766 5888999999999999998 688889999999999999


Q ss_pred             cCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCc
Q 006559          147 HNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQ  198 (640)
Q Consensus       147 ~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~  198 (640)
                      +|++. .+|  ++..+++|+.+||+.|+|+...-...-.+++|++|||++|.
T Consensus       439 sN~l~-~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  439 SNQLL-SFP--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             CCcee-ech--hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            99998 566  68899999999999999986543333334889999999997

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.95  E-value=7.1e-09  Score=94.86  Aligned_cols=129  Identities=22%  Similarity=0.329  Sum_probs=95.1

Q ss_pred             cccccCcceEEEEEeCCCcEEEEEEecccc----------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          340 LLGKGCVGATYKVVLDGGDVVVVKRIRERK----------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~----------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .+++|+=+.+|.+.+.+.. +++|.-..+.          .......|.+++.+++--.|..-.=+..+.+...|+|||+
T Consensus         3 ~i~~GAEa~i~~~~~~g~~-av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~I   81 (204)
T COG3642           3 LIKQGAEAIIYLTDFLGLP-AVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEYI   81 (204)
T ss_pred             hhhCCcceeEEeeeccCcc-eEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEEe
Confidence            5789999999999775544 5555432221          1123456888888877666655555566778889999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccccc
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF  485 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~  485 (640)
                      ++-.|.+.+...            ...++..+-.-+.-||   ..+|||+||.++||++..+. +.++||||+..-
T Consensus        82 ~G~~lkd~l~~~------------~~~~~r~vG~~vg~lH---~~givHGDLTtsNiIl~~~~-i~~IDfGLg~~s  141 (204)
T COG3642          82 EGELLKDALEEA------------RPDLLREVGRLVGKLH---KAGIVHGDLTTSNIILSGGR-IYFIDFGLGEFS  141 (204)
T ss_pred             CChhHHHHHHhc------------chHHHHHHHHHHHHHH---hcCeecCCCccceEEEeCCc-EEEEECCccccc
Confidence            999999888643            1345666667777899   56699999999999998765 899999998754

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.93  E-value=8.6e-10  Score=124.40  Aligned_cols=103  Identities=27%  Similarity=0.358  Sum_probs=63.0

Q ss_pred             CCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEc
Q 006559           91 TQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRL  170 (640)
Q Consensus        91 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L  170 (640)
                      .+|+.|+|++|+|++.++.   .++|+.|++++|.|++ +|...   .+|+.|+|++|+|++ +| ..   .++|+.|++
T Consensus       342 ~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~-LP~l~---~~L~~LdLs~N~Lt~-LP-~l---~s~L~~LdL  409 (788)
T PRK15387        342 SGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS-LPALP---SGLKELIVSGNRLTS-LP-VL---PSELKELMV  409 (788)
T ss_pred             cccceEecCCCccCCCCCC---Ccccceehhhcccccc-Ccccc---cccceEEecCCcccC-CC-Cc---ccCCCEEEc
Confidence            3788899999998876532   2456667777777764 55432   456677777777763 55 21   245666777


Q ss_pred             cCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCC
Q 006559          171 EDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPF  210 (640)
Q Consensus       171 ~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~  210 (640)
                      ++|+|++ +|..   ..+|+.|++++|+|+ .+|..+..+
T Consensus       410 S~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L  444 (788)
T PRK15387        410 SGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHL  444 (788)
T ss_pred             cCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhc
Confidence            7777664 4432   234556666666665 566554433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.86  E-value=2e-09  Score=100.00  Aligned_cols=123  Identities=28%  Similarity=0.351  Sum_probs=50.1

Q ss_pred             cEEEEEeCCCCCCCCchhcc-CCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccC-CCCCCCCEEEcc
Q 006559           69 RVIKLVLEDLDLTGPAEVLS-RLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGV-SSLRHLRRVDLS  146 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~-~~l~~L~~L~Ls  146 (640)
                      +...|+|.++.++-. +.++ .+++|+.|+|++|.++.. ..+..++.|+.|+|++|+++. ++..+ ..+++|+.|+|+
T Consensus        20 ~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~   96 (175)
T PF14580_consen   20 KLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLS   96 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-T
T ss_pred             ccccccccccccccc-cchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECc
Confidence            567788888888753 3455 588999999999999875 367788999999999999985 44334 468999999999


Q ss_pred             cCCCCCCCCchhcCCCCCCcEEEccCCcceeccc---CCcCCCCCCcEEEc
Q 006559          147 HNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLY---SVNSSSRSILDFNV  194 (640)
Q Consensus       147 ~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~---~~~~~~~~L~~l~l  194 (640)
                      +|++...--...+..+++|+.|+|.+|.++...-   -.+..+++|+.||-
T Consensus        97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            9999754333457788999999999999875321   12345677777653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.84  E-value=1e-08  Score=115.81  Aligned_cols=125  Identities=27%  Similarity=0.393  Sum_probs=61.5

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCC-----------------CCCCcEEEcccccccccCC
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSS-----------------WPHLKHLYLSHNRFTGTFP  131 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-----------------l~~L~~L~Ls~N~l~g~~p  131 (640)
                      ++..|++.+|.++..+.   .+++|++|+|++|+|+..+..+.+                 +++|+.|+|++|+|+. +|
T Consensus       223 ~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~-LP  298 (788)
T PRK15387        223 HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS-LP  298 (788)
T ss_pred             CCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCcccc-cc
Confidence            46666777776665332   246677777777776654321100                 1123333444444432 22


Q ss_pred             ccCCCCCCCCEEEcccCCCCCCCCc--hh----------cCC---C-CCCcEEEccCCcceecccCCcCCCCCCcEEEcc
Q 006559          132 SGVSSLRHLRRVDLSHNAYEGEIPM--TE----------LTR---L-PNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVS  195 (640)
Q Consensus       132 ~~~~~l~~L~~L~Ls~N~l~g~~p~--~~----------~~~---l-~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls  195 (640)
                      .   .+++|+.|+|++|+|++ +|.  ..          +..   + ++|+.|+|++|+|++ +|..   ..+|..|+++
T Consensus       299 ~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls  370 (788)
T PRK15387        299 V---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAY  370 (788)
T ss_pred             c---cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccCC-CCCC---Ccccceehhh
Confidence            2   12456666666666664 331  00          011   1 256777777777764 3332   2345555555


Q ss_pred             cCcCcccCCcc
Q 006559          196 NNQLSGQIPAW  206 (640)
Q Consensus       196 ~N~l~g~ip~~  206 (640)
                      +|+|++ +|..
T Consensus       371 ~N~L~~-LP~l  380 (788)
T PRK15387        371 NNRLTS-LPAL  380 (788)
T ss_pred             cccccc-Cccc
Confidence            555553 4443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.81  E-value=8.7e-09  Score=116.97  Aligned_cols=119  Identities=28%  Similarity=0.368  Sum_probs=83.0

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccC
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN  148 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  148 (640)
                      ..+.|+|.+++++..+..+.  ++|+.|+|++|.|+..+..+.  ++|+.|+|++|+|+ .+|..+.  ++|+.|+|++|
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N  251 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSIN  251 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCC
Confidence            47789999988887654342  578888999888887665443  57888888888887 4565443  46778888888


Q ss_pred             CCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcc
Q 006559          149 AYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSG  201 (640)
Q Consensus       149 ~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g  201 (640)
                      ++. .+| ..+.  ++|+.|+|++|+|+. +|..+  ..+|+.|+|++|+|++
T Consensus       252 ~L~-~LP-~~l~--s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        252 RIT-ELP-ERLP--SALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRT  297 (754)
T ss_pred             ccC-cCC-hhHh--CCCCEEECcCCccCc-ccccc--CCCCcEEECCCCcccc
Confidence            777 566 3332  467777777777773 45443  2467777777777774

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.80  E-value=3.4e-08  Score=89.96  Aligned_cols=140  Identities=16%  Similarity=0.278  Sum_probs=97.6

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEE-eccc---------cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKR-IRER---------KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~-l~~~---------~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      .++|-+|+=+.|+++.+.+ +.++||. ..+.         -.++...+|++.+.+++--.|.--.-++.+...-.|+||
T Consensus        12 l~likQGAEArv~~~~~~G-e~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~ME   90 (229)
T KOG3087|consen   12 LELIKQGAEARVPRGSFSG-EAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYME   90 (229)
T ss_pred             ceeeeccceeeEeeeccCC-ceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEEE
Confidence            4568899999999998864 5545554 2221         113445678888887765555544445556666789999


Q ss_pred             ccCC-CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC---CeEEccCCccc
Q 006559          408 YLPH-GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG---NACISDIGVHQ  483 (640)
Q Consensus       408 y~~~-gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~---~~kl~DfGl~~  483 (640)
                      |.++ -++.+++...-...   ..-.....++..|-+.+.-||   ...|||+||..+||+|..++   .+.++|||++.
T Consensus        91 ~~~g~~~vk~~i~~~~~~~---~~d~~~~~~~~~iG~~igklH---~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~  164 (229)
T KOG3087|consen   91 FIDGASTVKDFILSTMEDE---SEDEGLAELARRIGELIGKLH---DNDIIHGDLTTSNILLRSDGNQITPILIDFGLSS  164 (229)
T ss_pred             eccchhHHHHHHHHHccCc---ccchhHHHHHHHHHHHHHHhh---hCCeecccccccceEEecCCCcCceEEEeecchh
Confidence            9976 47888876543211   111223567888888999999   55699999999999997655   45799999976


Q ss_pred             c
Q 006559          484 L  484 (640)
Q Consensus       484 ~  484 (640)
                      .
T Consensus       165 ~  165 (229)
T KOG3087|consen  165 V  165 (229)
T ss_pred             c
Confidence            4

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.79  E-value=3.7e-09  Score=80.71  Aligned_cols=60  Identities=38%  Similarity=0.572  Sum_probs=31.9

Q ss_pred             CCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcc
Q 006559          115 HLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRF  175 (640)
Q Consensus       115 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l  175 (640)
                      +|++|+|++|+|+...+..|.++++|++|+|++|+++ .+|+..|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence            4555555555555444445555555555555555555 23334555555555555555543

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.77  E-value=2.1e-08  Score=113.83  Aligned_cols=123  Identities=28%  Similarity=0.392  Sum_probs=97.7

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      ..++.|+|.+|.++..+..+.  ++|+.|+|++|.|+..+..+  .++|+.|+|++|++. .+|..+.  ++|+.|+|++
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~  271 (754)
T PRK15370        199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFH  271 (754)
T ss_pred             cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh--hccccEEECcCCccC-cCChhHh--CCCCEEECcC
Confidence            368899999999987664443  58999999999999765544  347999999999998 6787664  5899999999


Q ss_pred             CCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCc
Q 006559          148 NAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPA  205 (640)
Q Consensus       148 N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~  205 (640)
                      |+|+ .+| ..+  .++|+.|+|++|+|++ +|..+  ..+|+.|++++|+|++ +|.
T Consensus       272 N~L~-~LP-~~l--~~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt~-LP~  321 (754)
T PRK15370        272 NKIS-CLP-ENL--PEELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLTA-LPE  321 (754)
T ss_pred             CccC-ccc-ccc--CCCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCcccc-CCc
Confidence            9998 577 333  2589999999999996 44443  2578999999999985 554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.77  E-value=6.1e-09  Score=79.45  Aligned_cols=61  Identities=36%  Similarity=0.479  Sum_probs=57.1

Q ss_pred             CCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcC
Q 006559          138 RHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQL  199 (640)
Q Consensus       138 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l  199 (640)
                      ++|+.|+|++|+++ .+|...|..+++|++|++++|.++...+..+..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            57999999999999 67878899999999999999999998889999999999999999986

...

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.76  E-value=4e-07  Score=95.14  Aligned_cols=169  Identities=23%  Similarity=0.262  Sum_probs=124.3

Q ss_pred             cceEEEEE-eCCCcEEEEEEecccc--chHHHHHHHHHHhccCCCcccceeEEEEc----CCeEEEEEeccCC-CCHHHh
Q 006559          346 VGATYKVV-LDGGDVVVVKRIRERK--KKREVDEWLRVIGGLRHSNIVSIRAYCNG----KDELFLVYDYLPH-GSLHSL  417 (640)
Q Consensus       346 fg~Vy~~~-~~~~~~vavK~l~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~----~~~~~lV~Ey~~~-gsL~~~  417 (640)
                      -.+.||+. -.+|..++.|++.-.+  .......-++..+++.|+|+|+|.+++..    +..+++||+|.|+ ++|.+.
T Consensus       289 ~~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~  368 (655)
T KOG3741|consen  289 SITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDL  368 (655)
T ss_pred             cceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHHH
Confidence            34679998 4578889999994321  11122344667889999999999998863    3479999999986 578776


Q ss_pred             hccCCC----------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          418 LHGSRG----------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       418 l~~~~~----------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      -.....          ......++...+.++.|+..||.++|+.+   +.-+-|.+.+||++.+.+++|+..|.......
T Consensus       369 ~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssG---LAck~L~~~kIlv~G~~RIriS~C~i~Dvl~~  445 (655)
T KOG3741|consen  369 YFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSG---LACKTLDLKKILVTGKMRIRISGCGIMDVLQE  445 (655)
T ss_pred             HccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcC---ceeecccHhHeEeeCcceEEEecccceeeecC
Confidence            543221          11234677889999999999999999654   88899999999999999999999888877654


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCC
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA  535 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p  535 (640)
                      ...        |.+       .   --.+-|.-.||.+++.|.||..-
T Consensus       446 d~~--------~~l-------e---~~Qq~D~~~lG~ll~aLAt~~~n  475 (655)
T KOG3741|consen  446 DPT--------EPL-------E---SQQQNDLRDLGLLLLALATGTEN  475 (655)
T ss_pred             CCC--------cch-------h---HHhhhhHHHHHHHHHHHhhcccc
Confidence            321        111       0   01357999999999999999643

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.73  E-value=6.4e-10  Score=122.35  Aligned_cols=128  Identities=29%  Similarity=0.336  Sum_probs=104.8

Q ss_pred             CCCCCEEeCCCCcCCCC-CCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEE
Q 006559           90 LTQLRLLSLKNNLLSSS-NLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTL  168 (640)
Q Consensus        90 l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L  168 (640)
                      +..|+.|+|.+|.|+.. .|.+.++++|+.|+|++|+|.......+.+|..|+.|+||+|+|+ .+| ..+.+++.|++|
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp-~tva~~~~L~tL  435 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLP-DTVANLGRLHTL  435 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhh-HHHHhhhhhHHH
Confidence            45678899999999875 457889999999999999997433346789999999999999998 788 788999999999


Q ss_pred             EccCCcceecccCCcCCCCCCcEEEcccCcCc-ccCCccc--CCCCCCCCCCCccc
Q 006559          169 RLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS-GQIPAWM--SPFGGSSFAGNKNL  221 (640)
Q Consensus       169 ~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~-g~ip~~~--~~~~~~~~~gn~~l  221 (640)
                      ...+|++.- +| .+..+++|+.+|+|.|+|+ +.+|..+  .++....+.||.++
T Consensus       436 ~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  436 RAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             hhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence            999999984 44 7778999999999999997 4455443  34556677788753

>PLN03210 Resistant to P

Probab=98.72  E-value=5e-08  Score=117.97  Aligned_cols=127  Identities=22%  Similarity=0.250  Sum_probs=89.4

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccC
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN  148 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  148 (640)
                      .++.|+|.++.+......+..+++|+.|+|++|...+..|.++.+++|+.|+|++|.....+|..++++++|+.|+|++|
T Consensus       612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c  691 (1153)
T PLN03210        612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC  691 (1153)
T ss_pred             CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence            56677777777665555667788888888887765555567788888888888887777778888888888888888886


Q ss_pred             CCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCc
Q 006559          149 AYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS  200 (640)
Q Consensus       149 ~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~  200 (640)
                      ..-..+| ..+ ++++|+.|+|++|...+.+|..   ..+|+.|++++|.++
T Consensus       692 ~~L~~Lp-~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~  738 (1153)
T PLN03210        692 ENLEILP-TGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE  738 (1153)
T ss_pred             CCcCccC-CcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc
Confidence            5555677 333 6777777777777655555433   234556666666554

syringae 6; Provisional

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.70  E-value=2.7e-07  Score=92.48  Aligned_cols=140  Identities=17%  Similarity=0.109  Sum_probs=95.6

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccccc-------------hHHHHHHHHHHhccCCCcc--cceeEEEEc----
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERKK-------------KREVDEWLRVIGGLRHSNI--VSIRAYCNG----  398 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~-------------~~~~~~e~~~l~~l~H~ni--v~l~~~~~~----  398 (640)
                      .+++-......|++..+ +|+.+.||+......             ...+.+|.+.+.++...+|  ....++...    
T Consensus        27 ~e~v~~~~~rrvvr~~~-~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~  105 (268)
T PRK15123         27 GEVFRELEGRRTLRFEL-AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNP  105 (268)
T ss_pred             CcEEecCCCceEEEEEE-CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCC
Confidence            34444444455677666 456788897643221             1136677777776654444  344555533    


Q ss_pred             -CCeEEEEEeccCCC-CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC------
Q 006559          399 -KDELFLVYDYLPHG-SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ------  470 (640)
Q Consensus       399 -~~~~~lV~Ey~~~g-sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~------  470 (640)
                       ...-++|+|++++- +|.+++.....   .+.+...+..++.+++..+.-||   ..+|+|+|++++|||++.      
T Consensus       106 ~~~~s~LVte~l~~~~sL~~~~~~~~~---~~~~~~~~~~ll~~la~~i~~LH---~~Gi~HgDL~~~NiLl~~~~~~~~  179 (268)
T PRK15123        106 ATRTSFIITEDLAPTISLEDYCADWAT---NPPDPRLKRMLIKRVATMVRDMH---AAGINHRDCYICHFLLHLPFPGRE  179 (268)
T ss_pred             ccceeEEEEeeCCCCccHHHHHHhhcc---cCCCHHHHHHHHHHHHHHHHHHH---HCcCccCCCChhhEEEeccccCCC
Confidence             23578999999976 89888753211   12345567789999999999999   556999999999999985      


Q ss_pred             -CCCeEEccCCcccc
Q 006559          471 -LGNACISDIGVHQL  484 (640)
Q Consensus       471 -~~~~kl~DfGl~~~  484 (640)
                       ++.+.++||+.++.
T Consensus       180 ~~~~~~LIDl~r~~~  194 (268)
T PRK15123        180 EDLKLSVIDLHRAQI  194 (268)
T ss_pred             CCceEEEEECCcccc
Confidence             46889999998764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.69  E-value=1.8e-09  Score=104.48  Aligned_cols=110  Identities=27%  Similarity=0.351  Sum_probs=83.2

Q ss_pred             hhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCC
Q 006559           85 EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPN  164 (640)
Q Consensus        85 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~  164 (640)
                      ..+.....|+.||||+|.++....+..-+|.++.|++|+|.+...  +.+..|++|+.||||+|.|+ .+- .+-..|-+
T Consensus       278 ~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~-Gwh~KLGN  353 (490)
T KOG1259|consen  278 VSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECV-GWHLKLGN  353 (490)
T ss_pred             EecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhh-hhHhhhcC
Confidence            344556778899999999887766777788899999999998632  23777889999999999887 343 34456778


Q ss_pred             CcEEEccCCcceecccCCcCCCCCCcEEEcccCcCc
Q 006559          165 LLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS  200 (640)
Q Consensus       165 L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~  200 (640)
                      .+.|.|+.|.+..  -+.+..+-+|.+||+++|+|.
T Consensus       354 IKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  354 IKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             EeeeehhhhhHhh--hhhhHhhhhheeccccccchh
Confidence            8888898887753  233556778888899988886

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.68  E-value=3.3e-09  Score=111.03  Aligned_cols=126  Identities=29%  Similarity=0.395  Sum_probs=78.4

Q ss_pred             EEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCC
Q 006559           70 VIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNA  149 (640)
Q Consensus        70 v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~  149 (640)
                      .+-++|+.|+++..+..++.|+ |+.|-+++|+++..+..++.+..|..||.+.|++. .+|+.++.|.+|+.|.+..|+
T Consensus       123 lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~  200 (722)
T KOG0532|consen  123 LTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNH  200 (722)
T ss_pred             HHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhh
Confidence            4445555555555555555554 55666666666555555555556666666666665 455566666666666666666


Q ss_pred             CCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcc
Q 006559          150 YEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSG  201 (640)
Q Consensus       150 l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g  201 (640)
                      +. .+| +++..| .|..||++.|+++ .+|..|..|+.|++|-|.+|.|..
T Consensus       201 l~-~lp-~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  201 LE-DLP-EELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hh-hCC-HHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            65 455 444444 3777777777777 567777777777777777777763

>PLN03210 Resistant to P

Probab=98.67  E-value=1.4e-07  Score=114.14  Aligned_cols=115  Identities=19%  Similarity=0.190  Sum_probs=69.5

Q ss_pred             CCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEE
Q 006559           89 RLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTL  168 (640)
Q Consensus        89 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L  168 (640)
                      .+.+|+.|+|++|.+...+..+..+++|+.|+|++|...+.+|. ++.+++|+.|+|++|.....+| ..+.++++|+.|
T Consensus       609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp-~si~~L~~L~~L  686 (1153)
T PLN03210        609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELP-SSIQYLNKLEDL  686 (1153)
T ss_pred             CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccc-hhhhccCCCCEE
Confidence            34566666666666655544555666666666666554455553 5666666666666665555666 456666666666


Q ss_pred             EccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcc
Q 006559          169 RLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAW  206 (640)
Q Consensus       169 ~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~  206 (640)
                      ++++|..-+.+|... ++++|+.|++++|...+.+|..
T Consensus       687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~  723 (1153)
T PLN03210        687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI  723 (1153)
T ss_pred             eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc
Confidence            666654444555443 4666666666666555555543

syringae 6; Provisional

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.66  E-value=7.2e-09  Score=115.92  Aligned_cols=185  Identities=21%  Similarity=0.192  Sum_probs=122.4

Q ss_pred             cccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          340 LLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      -+-+|.|+.++-++-. .|...+.|......     .-+....+-.++-..+||-++.....+......+||++|+.+++
T Consensus       811 p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~rsP~~L~~~~~~~~~  890 (1205)
T KOG0606|consen  811 PSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSFPCRSPLPLVGHYLNGGD  890 (1205)
T ss_pred             cccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccCCCCceecccCCCCCCCCcchhhHHhccCC
Confidence            5667888888776532 23333333332210     01111111112212245666655555556778999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC-------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-------  486 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~-------  486 (640)
                      |..-++....     .+..-.......+..+++|||+.   .+.|||++|.|.+...++..+++|||+.....       
T Consensus       891 ~~Skl~~~~~-----~saepaRs~i~~~vqs~e~L~s~---~r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~~~p~~~  962 (1205)
T KOG0606|consen  891 LPSKLHNSGC-----LSAEPARSPILERVQSLESLHSS---LRKHRDLKPDSLLIAYDGHRPLTDFGTLSKVGLIPPTTD  962 (1205)
T ss_pred             chhhhhcCCC-----cccccccchhHHHHhhhhccccc---hhhcccccccchhhcccCCcccCccccccccccccCcCC
Confidence            9999886542     22222233556677899999954   38999999999999999999999998432210       


Q ss_pred             ------------------------------CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCC
Q 006559          487 ------------------------------TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAK  536 (640)
Q Consensus       487 ------------------------------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~  536 (640)
                                                    ....+|..|.+||..       .+......+|+|++|++++|.++|..||
T Consensus       963 ~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~-------lg~~hgs~ad~~~~g~~l~e~l~g~pp~ 1035 (1205)
T KOG0606|consen  963 LSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEIL-------LGRRHGSAADWWSSGVCLFEVLTGIPPF 1035 (1205)
T ss_pred             cccccccCccccccccccccccccchhhccccccCCCcccCCccc-------ccccCCCcchhhhhhhhhhhhhcCCCCC
Confidence                                          012347789999964       3445557899999999999999999999


Q ss_pred             CCC
Q 006559          537 GDG  539 (640)
Q Consensus       537 ~~~  539 (640)
                      ...
T Consensus      1036 na~ 1038 (1205)
T KOG0606|consen 1036 NAE 1038 (1205)
T ss_pred             CCc
Confidence            753

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.65  E-value=1.4e-09  Score=113.85  Aligned_cols=130  Identities=27%  Similarity=0.393  Sum_probs=108.3

Q ss_pred             CchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCC
Q 006559           83 PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRL  162 (640)
Q Consensus        83 ~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l  162 (640)
                      .+..+++|..|++|||+.|+++..+..++.|+ |+.|-+++|+++ .+|..++.+..|..||.+.|++. .+| ..++.+
T Consensus       113 ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slp-sql~~l  188 (722)
T KOG0532|consen  113 IPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLP-SQLGYL  188 (722)
T ss_pred             cchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hch-HHhhhH
Confidence            34568899999999999999999988888888 999999999997 78889999999999999999998 688 789999


Q ss_pred             CCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCC---CCCCCCCc
Q 006559          163 PNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFG---GSSFAGNK  219 (640)
Q Consensus       163 ~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~---~~~~~gn~  219 (640)
                      .+|+.|.+..|++.. +|..+. .-.|..||+|.|+++ .||..|..+.   ...++.||
T Consensus       189 ~slr~l~vrRn~l~~-lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  189 TSLRDLNVRRNHLED-LPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             HHHHHHHHhhhhhhh-CCHHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCC
Confidence            999999999999985 444444 456889999999998 8898776543   33444554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.61  E-value=1.2e-08  Score=105.97  Aligned_cols=133  Identities=26%  Similarity=0.311  Sum_probs=95.5

Q ss_pred             CcEEEEEeCCCCCCCCc-----hhccCC-CCCCEEeCCCCcCCCCCC-----CCCCCCCCcEEEccccccccc----CCc
Q 006559           68 HRVIKLVLEDLDLTGPA-----EVLSRL-TQLRLLSLKNNLLSSSNL-----NLSSWPHLKHLYLSHNRFTGT----FPS  132 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-----~~l~~l-~~L~~L~Ls~N~l~~~~~-----~~~~l~~L~~L~Ls~N~l~g~----~p~  132 (640)
                      .++..|+++++.+++..     ..+..+ ++|+.|+|++|.+++...     .+..+++|+.|+|++|.+++.    ++.
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  187 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE  187 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence            35888999988887421     345666 889999999999985321     355677899999999999852    344


Q ss_pred             cCCCCCCCCEEEcccCCCCCCCCc---hhcCCCCCCcEEEccCCcceecccCCc-----CCCCCCcEEEcccCcCc
Q 006559          133 GVSSLRHLRRVDLSHNAYEGEIPM---TELTRLPNLLTLRLEDNRFTGTLYSVN-----SSSRSILDFNVSNNQLS  200 (640)
Q Consensus       133 ~~~~l~~L~~L~Ls~N~l~g~~p~---~~~~~l~~L~~L~L~~N~l~g~~~~~~-----~~~~~L~~l~ls~N~l~  200 (640)
                      .+..+++|+.|+|++|.+++.-..   ..+..+++|++|++++|.+++.....+     .....|+.|++++|.++
T Consensus       188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            556667999999999988743210   345677889999999999886322111     12478999999999887

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.61  E-value=1.1e-08  Score=106.18  Aligned_cols=133  Identities=29%  Similarity=0.391  Sum_probs=84.8

Q ss_pred             CcEEEEEeCCCCCCCCc-hhccCCC---CCCEEeCCCCcCCCCCC-----CCCCC-CCCcEEEccccccccc----CCcc
Q 006559           68 HRVIKLVLEDLDLTGPA-EVLSRLT---QLRLLSLKNNLLSSSNL-----NLSSW-PHLKHLYLSHNRFTGT----FPSG  133 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-~~l~~l~---~L~~L~Ls~N~l~~~~~-----~~~~l-~~L~~L~Ls~N~l~g~----~p~~  133 (640)
                      .++..|+|+++.+.+.. ..+..+.   +|+.|++++|.+++...     .+..+ ++|+.|+|++|.+++.    ++..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            46777888777776432 3333333   38888888887764211     23455 7778888888887742    3334


Q ss_pred             CCCCCCCCEEEcccCCCCCC----CCchhcCCCCCCcEEEccCCcceec----ccCCcCCCCCCcEEEcccCcCcc
Q 006559          134 VSSLRHLRRVDLSHNAYEGE----IPMTELTRLPNLLTLRLEDNRFTGT----LYSVNSSSRSILDFNVSNNQLSG  201 (640)
Q Consensus       134 ~~~l~~L~~L~Ls~N~l~g~----~p~~~~~~l~~L~~L~L~~N~l~g~----~~~~~~~~~~L~~l~ls~N~l~g  201 (640)
                      +..+.+|+.|+|++|.+++.    ++ ..+..+++|++|+|++|.+++.    +...+..+++|+.|++++|.+++
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALA-EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHH-HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence            55667788888888887742    12 2344556788888888877643    23344556778888888887775

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.61  E-value=1.6e-07  Score=88.80  Aligned_cols=124  Identities=23%  Similarity=0.267  Sum_probs=78.6

Q ss_pred             eEEEEEeCCCcEEEEEEeccc---------------c--------c-----hHHHHHHHHHHhccCCC--cccceeEEEE
Q 006559          348 ATYKVVLDGGDVVVVKRIRER---------------K--------K-----KREVDEWLRVIGGLRHS--NIVSIRAYCN  397 (640)
Q Consensus       348 ~Vy~~~~~~~~~vavK~l~~~---------------~--------~-----~~~~~~e~~~l~~l~H~--niv~l~~~~~  397 (640)
                      .||.|...+|..+|||..+..               .        .     +....+|.+.|.++...  ++.+.+++. 
T Consensus         1 ~Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~-   79 (188)
T PF01163_consen    1 DVYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDYN-   79 (188)
T ss_dssp             EEEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEEE-
T ss_pred             CEEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEEe-
Confidence            489999999999999987531               0        0     11245688889888765  455555442 


Q ss_pred             cCCeEEEEEeccC--CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHh-hcCCCCCceecCCCCCCeEECCCCCe
Q 006559          398 GKDELFLVYDYLP--HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFL-HGYNKAHLFHGHLSSSNIVVDQLGNA  474 (640)
Q Consensus       398 ~~~~~~lV~Ey~~--~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yL-H~~~~~~ivHrdlk~~NILl~~~~~~  474 (640)
                         .-+|||||++  +..+..+....       ++......++.++...+..+ |   ..+|||+||.+.|||++++ .+
T Consensus        80 ---~~~ivME~I~~~G~~~~~l~~~~-------~~~~~~~~~~~~il~~~~~~~~---~~givHGDLs~~NIlv~~~-~~  145 (188)
T PF01163_consen   80 ---RNVIVMEYIGEDGVPLPRLKDVD-------LSPEEPKELLEEILEEIIKMLH---KAGIVHGDLSEYNILVDDG-KV  145 (188)
T ss_dssp             ---TTEEEEE--EETTEEGGCHHHCG-------GGGSTHHHHHHHHHHHHHHHHH---CTTEEESS-STTSEEEETT-CE
T ss_pred             ---CCEEEEEecCCCccchhhHHhcc-------ccchhHHHHHHHHHHHHHHHHH---hcCceecCCChhhEEeecc-eE
Confidence               3479999998  54444332211       11223455667777766654 6   5579999999999999987 89


Q ss_pred             EEccCCcccccC
Q 006559          475 CISDIGVHQLFH  486 (640)
Q Consensus       475 kl~DfGl~~~~~  486 (640)
                      .++|||-+....
T Consensus       146 ~iIDf~qav~~~  157 (188)
T PF01163_consen  146 YIIDFGQAVDSS  157 (188)
T ss_dssp             EE--GTTEEETT
T ss_pred             EEEecCcceecC
Confidence            999999876544

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.59  E-value=7.3e-09  Score=100.34  Aligned_cols=128  Identities=23%  Similarity=0.286  Sum_probs=71.4

Q ss_pred             EEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCC
Q 006559           70 VIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNA  149 (640)
Q Consensus        70 v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~  149 (640)
                      ++.+||++|.++-..++..-++.++.|+||.|.+.... .+..+++|+.||||+|.++ .+-.+-.+|.+.+.|.|+.|.
T Consensus       286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~  363 (490)
T KOG1259|consen  286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNK  363 (490)
T ss_pred             hhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhh
Confidence            44555555555544455556666666666666665432 2555666666666666665 233333455566666666666


Q ss_pred             CCCCCCchhcCCCCCCcEEEccCCcceecc-cCCcCCCCCCcEEEcccCcCccc
Q 006559          150 YEGEIPMTELTRLPNLLTLRLEDNRFTGTL-YSVNSSSRSILDFNVSNNQLSGQ  202 (640)
Q Consensus       150 l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~-~~~~~~~~~L~~l~ls~N~l~g~  202 (640)
                      +.. +  +.+..|-+|.+||+++|++...- -..+++++-|+.+.|.+|.+++.
T Consensus       364 iE~-L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  364 IET-L--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             Hhh-h--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            652 1  33555556666666666664321 12344555566666666666543

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.49  E-value=1.8e-07  Score=65.53  Aligned_cols=39  Identities=54%  Similarity=0.997  Sum_probs=27.8

Q ss_pred             hhhHHHHHHhhhcCCC-CCCCCCCCCCC--CCCCCCCCCceEec
Q 006559           24 YSDISTLLSFKASVTG-SSDSLSSWVNS--TDPCFDSWRGVTCN   64 (640)
Q Consensus        24 ~~~~~~ll~~k~~~~~-~~~~~~sW~~~--~~~c~~~w~gv~C~   64 (640)
                      +.|.++|++||+++.. +...+.+|+..  .+||  +|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C--~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC--SWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC--CSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe--eeccEEeC
Confidence            5799999999999974 54667799765  4566  89999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.36  E-value=3.8e-07  Score=91.96  Aligned_cols=92  Identities=24%  Similarity=0.269  Sum_probs=80.1

Q ss_pred             CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCC
Q 006559          109 NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRS  188 (640)
Q Consensus       109 ~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~  188 (640)
                      .|..+++|+.|+|++|.+++.-+.+|.++..|+.|.|..|++. .+....|.++..|+.|+|.+|+|+-.-|..|..+.+
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~  347 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS  347 (498)
T ss_pred             HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence            4788899999999999999888889999999999999999987 455467888999999999999999888889988999


Q ss_pred             CcEEEcccCcCcc
Q 006559          189 ILDFNVSNNQLSG  201 (640)
Q Consensus       189 L~~l~ls~N~l~g  201 (640)
                      |..|+|-.|.|..
T Consensus       348 l~~l~l~~Np~~C  360 (498)
T KOG4237|consen  348 LSTLNLLSNPFNC  360 (498)
T ss_pred             eeeeehccCcccC
Confidence            9999998888764

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.36  E-value=2.5e-06  Score=83.06  Aligned_cols=131  Identities=19%  Similarity=0.237  Sum_probs=88.0

Q ss_pred             HHHhhccccccCcceEEEEEeCCCcEEEEEEecccc------------------------chHHHHHHHHHHhccCCC--
Q 006559          334 LKSSAELLGKGCVGATYKVVLDGGDVVVVKRIRERK------------------------KKREVDEWLRVIGGLRHS--  387 (640)
Q Consensus       334 ~~~~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~------------------------~~~~~~~e~~~l~~l~H~--  387 (640)
                      +.+.++.||-|.=+.||.|..+.|..+|||.=+...                        .+...++|.+.|.+|.-.  
T Consensus        92 ve~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~  171 (304)
T COG0478          92 VEAIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGV  171 (304)
T ss_pred             HHhhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCC
Confidence            345678999999999999999999999999754210                        012245677778777543  


Q ss_pred             cccceeEEEEcCCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHH-HHHHHHHHHHHhhcCCCCCceecCCCCCCe
Q 006559          388 NIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLK-LASDSAKGLAFLHGYNKAHLFHGHLSSSNI  466 (640)
Q Consensus       388 niv~l~~~~~~~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~-i~~~ia~gL~yLH~~~~~~ivHrdlk~~NI  466 (640)
                      .+.+.+++    +...+||||+++-.|...--.       .-....++. |+.++..+.       ..+|||+|+..=||
T Consensus       172 ~VP~P~~~----nRHaVvMe~ieG~eL~~~r~~-------~en~~~il~~il~~~~~~~-------~~GiVHGDlSefNI  233 (304)
T COG0478         172 KVPKPIAW----NRHAVVMEYIEGVELYRLRLD-------VENPDEILDKILEEVRKAY-------RRGIVHGDLSEFNI  233 (304)
T ss_pred             CCCCcccc----ccceeeeehcccceeecccCc-------ccCHHHHHHHHHHHHHHHH-------HcCccccCCchheE
Confidence            45555543    456899999988666543210       111223332 333333332       24599999999999


Q ss_pred             EECCCCCeEEccCCcc
Q 006559          467 VVDQLGNACISDIGVH  482 (640)
Q Consensus       467 Ll~~~~~~kl~DfGl~  482 (640)
                      +++++|.+.++||-=+
T Consensus       234 lV~~dg~~~vIDwPQ~  249 (304)
T COG0478         234 LVTEDGDIVVIDWPQA  249 (304)
T ss_pred             EEecCCCEEEEeCccc
Confidence            9999999999998433

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.33  E-value=3.6e-05  Score=78.90  Aligned_cols=191  Identities=15%  Similarity=0.176  Sum_probs=115.9

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccccc--hHHHHHHHHHHhc-cCCCcccceeEE----EE--cCC-eEEEEEe
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERKK--KREVDEWLRVIGG-LRHSNIVSIRAY----CN--GKD-ELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~--~~~~~~e~~~l~~-l~H~niv~l~~~----~~--~~~-~~~lV~E  407 (640)
                      ...||+|+-+.+|-.-.-. .. +.|+......  +.+..   ..|.+ -.||-+-.=+.+    ..  +.. ..-+.|.
T Consensus        16 gr~LgqGgea~ly~l~e~~-d~-VAKIYh~Pppa~~aqk~---a~la~~p~~p~~~~rvaWPqa~L~G~~~~~~iGflmP   90 (637)
T COG4248          16 GRPLGQGGEADLYTLGEVR-DQ-VAKIYHAPPPAAQAQKV---AELAATPDAPLLNYRVAWPQATLHGGRRGKVIGFLMP   90 (637)
T ss_pred             CccccCCccceeeecchhh-ch-hheeecCCCchHHHHHH---HHhccCCCCcchhhhhcccHHHhhCCCccceeEEecc
Confidence            4569999999999643221 22 3455543311  11111   22222 245533220111    01  112 2456666


Q ss_pred             ccCCC-CHHHhhccCC-CCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccccc
Q 006559          408 YLPHG-SLHSLLHGSR-GPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF  485 (640)
Q Consensus       408 y~~~g-sL~~~l~~~~-~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~  485 (640)
                      .+++. -...++.... .......+|...+++++.+|.+.+-||.   .+.+-+|+.++|+|+.+++.+.+.|----..-
T Consensus        91 ~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~---~Gh~vGDVn~~~~lVsd~~~V~LVdsDsfqi~  167 (637)
T COG4248          91 KVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHE---HGHVVGDVNQNSFLVSDDSKVVLVDSDSFQIN  167 (637)
T ss_pred             cCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHh---cCCcccccCccceeeecCceEEEEcccceeec
Confidence            66543 2233332111 1122357899999999999999999995   45788999999999999999999873221111


Q ss_pred             -----CCCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhC-CCCCCC
Q 006559          486 -----HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG-KMAKGD  538 (640)
Q Consensus       486 -----~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg-~~p~~~  538 (640)
                           ....++...|.+||+-...  ++.+..-+...|-|.+||++++++.| ++||.+
T Consensus       168 ~ng~~~~cpVg~~eftPPElQ~~~--sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysG  224 (637)
T COG4248         168 ANGTLHLCPVGVSEFTPPELQTLP--SFVGFERTANHDNFGLAVLIFHLLFGGRHPYSG  224 (637)
T ss_pred             cCCceEecccCccccCCHHHhccc--cccccCCCccccchhHHHHHHHHHhcCCCCCCc
Confidence                 1123457789999964311  33444556789999999999999886 999874

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=1.4e-07  Score=96.20  Aligned_cols=133  Identities=23%  Similarity=0.230  Sum_probs=85.0

Q ss_pred             CcEEEEEeCCCCCCCC---chhccCCCCCCEEeCCCCcCCCCCCC--CC-------------------------CCCCCc
Q 006559           68 HRVIKLVLEDLDLTGP---AEVLSRLTQLRLLSLKNNLLSSSNLN--LS-------------------------SWPHLK  117 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~---~~~l~~l~~L~~L~Ls~N~l~~~~~~--~~-------------------------~l~~L~  117 (640)
                      .+|+.|||+.|-+..-   ......|++|+.|+|+.|.|.-...+  -.                         .||+|+
T Consensus       146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~  225 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE  225 (505)
T ss_pred             CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence            4789999988876642   25667899999999999988643221  11                         245556


Q ss_pred             EEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceec-ccCC-----cCCCCCCcE
Q 006559          118 HLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGT-LYSV-----NSSSRSILD  191 (640)
Q Consensus       118 ~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~-~~~~-----~~~~~~L~~  191 (640)
                      .|+|..|...+........+..|+.|||++|++-..-.....+.+|.|+.|+++.+.++.. +|+.     ...+++|++
T Consensus       226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~  305 (505)
T KOG3207|consen  226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEY  305 (505)
T ss_pred             HhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccccee
Confidence            6666665422222233345667777888877776432223456777777777777777643 2332     345677888


Q ss_pred             EEcccCcCc
Q 006559          192 FNVSNNQLS  200 (640)
Q Consensus       192 l~ls~N~l~  200 (640)
                      |+++.|++.
T Consensus       306 L~i~~N~I~  314 (505)
T KOG3207|consen  306 LNISENNIR  314 (505)
T ss_pred             eecccCccc
Confidence            888888875

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.31  E-value=8.4e-06  Score=80.00  Aligned_cols=140  Identities=16%  Similarity=0.216  Sum_probs=84.9

Q ss_pred             ccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhccCCCcc--cceeEEEEcCCeEEEEEeccCCCC-HH
Q 006559          339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNI--VSIRAYCNGKDELFLVYDYLPHGS-LH  415 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~ni--v~l~~~~~~~~~~~lV~Ey~~~gs-L~  415 (640)
                      +.||+|..+.||+.   .+..+++|............+|.+.++.+....+  .+.+++....+...+|||++++.. +.
T Consensus         7 ~~i~~G~t~~~y~~---~~~~~VlR~~~~~~~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~G~~~~~   83 (226)
T TIGR02172         7 TQTGEGGNGESYTH---KTGKWMLKLYNPGFDKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIVGKRSFS   83 (226)
T ss_pred             eeecCCCCcceeEe---cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecCCccchh
Confidence            46899999999984   2445678887765555667888888887765444  566777777777889999998863 21


Q ss_pred             Hh---------------------hccCCCCCCCCcC--HHHHHHHH-------HHHHH-HHHHhhcC-CCCCceecCCCC
Q 006559          416 SL---------------------LHGSRGPGRMPVD--WNKRLKLA-------SDSAK-GLAFLHGY-NKAHLFHGHLSS  463 (640)
Q Consensus       416 ~~---------------------l~~~~~~~~~~l~--~~~~~~i~-------~~ia~-gL~yLH~~-~~~~ivHrdlk~  463 (640)
                      ..                     +|..... ...+.  +.......       ..+.. ...+|... ..+.++|+|+.|
T Consensus        84 ~~~~~~~~~~~~l~~~la~~l~~lH~~~~~-~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~HgD~~~  162 (226)
T TIGR02172        84 RIISDNPSRLEEIAKIFAEMAKKLHSTKCD-TSTFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTSTCLHGDFQI  162 (226)
T ss_pred             hhhcCCHHHHHHHHHHHHHHHHHHhCCCCC-CCcHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCCceEecCCCC
Confidence            11                     1211000 01111  00000000       00011 11222211 234578999999


Q ss_pred             CCeEECCCCCeEEccCCccc
Q 006559          464 SNIVVDQLGNACISDIGVHQ  483 (640)
Q Consensus       464 ~NILl~~~~~~kl~DfGl~~  483 (640)
                      .||++++++ +.|.||+.+.
T Consensus       163 ~Nii~~~~~-~~iIDwe~a~  181 (226)
T TIGR02172       163 GNLITSGKG-TYWIDLGDFG  181 (226)
T ss_pred             CcEEEcCCC-cEEEechhcC
Confidence            999999888 9999998764

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.26  E-value=5.8e-06  Score=89.89  Aligned_cols=148  Identities=16%  Similarity=0.212  Sum_probs=92.5

Q ss_pred             ChHHHHHHhh-ccccccCcceEEEEEeCCCcEEEEEEeccccch--------------------------------HH--
Q 006559          329 NVGDLLKSSA-ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKK--------------------------------RE--  373 (640)
Q Consensus       329 ~~~~~~~~~~-~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~--------------------------------~~--  373 (640)
                      .+++...++. +-|+.++-|.||+|++++|+.||||+.+..-.+                                ++  
T Consensus       120 ~iee~F~eF~~~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~  199 (517)
T COG0661         120 PIEELFSEFEPEPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFE  199 (517)
T ss_pred             CHHHHHHHcCCCchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHH
Confidence            5666666655 679999999999999999999999998542100                                01  


Q ss_pred             --------HHHHHHHHhcc----CCCcccceeEEEEc-CCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHH
Q 006559          374 --------VDEWLRVIGGL----RHSNIVSIRAYCNG-KDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASD  440 (640)
Q Consensus       374 --------~~~e~~~l~~l----~H~niv~l~~~~~~-~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~  440 (640)
                              +..|..-+.++    ++.-=+++-.+|.+ .....|+|||++|-.+.+.......    .++-..   ++..
T Consensus       200 ~~l~~ElDy~~EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~----g~d~k~---ia~~  272 (517)
T COG0661         200 KRLREELDYRREAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSA----GIDRKE---LAEL  272 (517)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHhc----CCCHHH---HHHH
Confidence                    11222222222    22222333344433 4578999999999888877422111    133222   2222


Q ss_pred             HHHHH-HHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          441 SAKGL-AFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       441 ia~gL-~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ++++. ..+-   .-+++|.|..|-||+++.+|+..+.|||+.....
T Consensus       273 ~~~~f~~q~~---~dgffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~  316 (517)
T COG0661         273 LVRAFLRQLL---RDGFFHADPHPGNILVRSDGRIVLLDFGIVGRLD  316 (517)
T ss_pred             HHHHHHHHHH---hcCccccCCCccceEEecCCcEEEEcCcceecCC
Confidence            22211 1111   2349999999999999999999999999976654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.23  E-value=6.5e-07  Score=96.06  Aligned_cols=123  Identities=30%  Similarity=0.386  Sum_probs=92.0

Q ss_pred             EEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCC-CCcEEEcccccccccCCccCCCCCCCCEEEcccCCC
Q 006559           72 KLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWP-HLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAY  150 (640)
Q Consensus        72 ~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l  150 (640)
                      .+++..+.+......+..++.++.|++.+|.++..++....++ +|+.|++++|.+. .+|..+..+++|+.|++++|++
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l  175 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchh
Confidence            4666666665555566677888888888888888777777774 8888888888887 5666778888888888888888


Q ss_pred             CCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCc
Q 006559          151 EGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQ  198 (640)
Q Consensus       151 ~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~  198 (640)
                      + .+| ...+.+++|+.|++++|+++. +|........|..|.+++|.
T Consensus       176 ~-~l~-~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         176 S-DLP-KLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             h-hhh-hhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCc
Confidence            8 566 444477888888888888874 44443345668888888885

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.17  E-value=6.8e-07  Score=96.83  Aligned_cols=142  Identities=22%  Similarity=0.282  Sum_probs=89.9

Q ss_pred             HHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-------c--------cccccccCCccccC
Q 006559          439 SDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-------F--------FINDAYNAPELKFN  503 (640)
Q Consensus       439 ~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-------~--------~~~~~y~aPE~~~~  503 (640)
                      .+++.|+.|+|.  .+++||++|.|++|.+++.+..||+.|+.......+       +        .....|.|||++  
T Consensus       106 ~~v~dgl~flh~--sAk~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~--  181 (700)
T KOG2137|consen  106 GNVADGLAFLHR--SAKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYL--  181 (700)
T ss_pred             hcccchhhhhcc--CcceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhh--
Confidence            455689999995  678999999999999999999999999875443220       0        113468899964  


Q ss_pred             CCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHH
Q 006559          504 NNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVAL  582 (640)
Q Consensus       504 ~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~  582 (640)
                           .....+.++|+||+||++|-+.. |+.-+..... ...+-......+...  +.    ..   .+...++.+-+.
T Consensus       182 -----~~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~-~~~~~~~~~~~~~~~--~~----~s---~~~p~el~~~l~  246 (700)
T KOG2137|consen  182 -----LGTTNTPASDVFSLGVLIYTIYNGGKSIIAANGG-LLSYSFSRNLLNAGA--FG----YS---NNLPSELRESLK  246 (700)
T ss_pred             -----ccccccccccceeeeeEEEEEecCCcchhhccCC-cchhhhhhccccccc--cc----cc---ccCcHHHHHHHH
Confidence                 33455689999999999999994 5544443221 111111111111000  00    11   122233444455


Q ss_pred             HccCCCCCCCCCHHHHH
Q 006559          583 LCLAPLPKDRPNMSIVH  599 (640)
Q Consensus       583 ~Cl~~~P~~RPs~~~v~  599 (640)
                      +.+..++.-||++.++.
T Consensus       247 k~l~~~~~~rp~~~~l~  263 (700)
T KOG2137|consen  247 KLLNGDSAVRPTLDLLL  263 (700)
T ss_pred             HHhcCCcccCcchhhhh
Confidence            57888999999776653

>PRK09902 hypothetical protein; Provisional

Probab=98.17  E-value=2.8e-05  Score=74.07  Aligned_cols=135  Identities=17%  Similarity=0.144  Sum_probs=97.2

Q ss_pred             cccCcceEEEEEeCCCcEEEEEEeccc--------cchHHHHHHHHHHhccCCCcc--cceeEEEE-c----CCeEEEEE
Q 006559          342 GKGCVGATYKVVLDGGDVVVVKRIRER--------KKKREVDEWLRVIGGLRHSNI--VSIRAYCN-G----KDELFLVY  406 (640)
Q Consensus       342 G~G~fg~Vy~~~~~~~~~vavK~l~~~--------~~~~~~~~e~~~l~~l~H~ni--v~l~~~~~-~----~~~~~lV~  406 (640)
                      |+||-+-|+...+.+. .+-+|+-...        ..+..|.+|...|.+|...+|  .+.. ++. .    .-.-+||+
T Consensus        27 ~rgG~SgV~r~~~~g~-~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pv-f~~~~k~~~~~rA~LVT  104 (216)
T PRK09902         27 RRNGMSGVQCVERNGK-KLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIV-FGEAVKIEGEWRALLVT  104 (216)
T ss_pred             CCCCcceEEEEEeCCc-EEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccc-eeeeeccCCceEEEEEE
Confidence            6788888998777655 5778875421        235678899988888764433  3333 332 1    12578999


Q ss_pred             eccCC-CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC--eEEccCCccc
Q 006559          407 DYLPH-GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN--ACISDIGVHQ  483 (640)
Q Consensus       407 Ey~~~-gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~--~kl~DfGl~~  483 (640)
                      |-+++ -+|.+++.....   .+.+...+..+..++++.+.-||   ..++.|+|+-+.||+++.++.  ++++||.-++
T Consensus       105 e~L~g~~~L~~~l~~~~~---~~~~~~~k~~il~~va~~ia~LH---~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r  178 (216)
T PRK09902        105 EDMAGFISIADWYAQHAV---SPYSDEVRQAMLKAVALAFKKMH---SVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSR  178 (216)
T ss_pred             EeCCCCccHHHHHhcCCc---CCcchHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHhheeecCCCCeeEEEEEhhccc
Confidence            97763 588888864321   13456677889999999999999   556999999999999986666  9999997655


Q ss_pred             c
Q 006559          484 L  484 (640)
Q Consensus       484 ~  484 (640)
                      .
T Consensus       179 ~  179 (216)
T PRK09902        179 R  179 (216)
T ss_pred             h
Confidence            3

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.14  E-value=1.1e-05  Score=78.12  Aligned_cols=105  Identities=27%  Similarity=0.347  Sum_probs=77.4

Q ss_pred             HHHHHHHHHhccCCCc--ccceeEEEEcC----CeEEEEEeccCCC-CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHH
Q 006559          373 EVDEWLRVIGGLRHSN--IVSIRAYCNGK----DELFLVYDYLPHG-SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGL  445 (640)
Q Consensus       373 ~~~~e~~~l~~l~H~n--iv~l~~~~~~~----~~~~lV~Ey~~~g-sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL  445 (640)
                      ...+|.+.+..+....  +.+.+++....    ...++|+|++++- +|.+++....     ..+......++.++++.+
T Consensus        57 ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~-----~~~~~~~~~ll~~l~~~i  131 (206)
T PF06293_consen   57 RAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWE-----QLDPSQRRELLRALARLI  131 (206)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhc-----ccchhhHHHHHHHHHHHH
Confidence            3455666555554333  45566666542    2468999999874 8999887532     134456778999999999


Q ss_pred             HHhhcCCCCCceecCCCCCCeEECCCC---CeEEccCCccccc
Q 006559          446 AFLHGYNKAHLFHGHLSSSNIVVDQLG---NACISDIGVHQLF  485 (640)
Q Consensus       446 ~yLH~~~~~~ivHrdlk~~NILl~~~~---~~kl~DfGl~~~~  485 (640)
                      .-||   ..+|+|+|+++.|||++.+.   .+.++||+-++..
T Consensus       132 ~~lH---~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~  171 (206)
T PF06293_consen  132 AKLH---DAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFR  171 (206)
T ss_pred             HHHH---HCcCCCCCCCcccEEEeCCCCceeEEEEcchhceeC
Confidence            9999   55699999999999999887   8899999887653

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.13  E-value=3.5e-08  Score=106.06  Aligned_cols=122  Identities=26%  Similarity=0.273  Sum_probs=84.0

Q ss_pred             EEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCcc-CCCCCCCCEEEcccCCCC
Q 006559           73 LVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSG-VSSLRHLRRVDLSHNAYE  151 (640)
Q Consensus        73 l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~Ls~N~l~  151 (640)
                      ++.+.|.|.-...++.-++.|+.|||++|++.... .+..|++|++|||+.|.|. .+|.. ...+. |+.|.|++|.++
T Consensus       169 a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~  245 (1096)
T KOG1859|consen  169 ASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT  245 (1096)
T ss_pred             hhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH
Confidence            33444444444466777888899999999887754 6777888999999999887 34432 22333 888888888887


Q ss_pred             CCCCchhcCCCCCCcEEEccCCcceeccc-CCcCCCCCCcEEEcccCcCc
Q 006559          152 GEIPMTELTRLPNLLTLRLEDNRFTGTLY-SVNSSSRSILDFNVSNNQLS  200 (640)
Q Consensus       152 g~~p~~~~~~l~~L~~L~L~~N~l~g~~~-~~~~~~~~L~~l~ls~N~l~  200 (640)
                      . +  ..+.+|.+|+.|||++|-|.+.-- ..+..+.+|..|+|.+|.+-
T Consensus       246 t-L--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  246 T-L--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             h-h--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            3 2  346788888888888888776321 11233566777777777664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.13  E-value=1.4e-06  Score=93.48  Aligned_cols=128  Identities=30%  Similarity=0.370  Sum_probs=92.5

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccC
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN  148 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  148 (640)
                      .+..+++.++.+.-.+..+..+++|+.|++++|++...++..+.++.|+.|++++|+++ .+|.....+..|+.|++++|
T Consensus       141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence            57778888887776556789999999999999999988776668889999999999997 56666556666888888888


Q ss_pred             CCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCc
Q 006559          149 AYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS  200 (640)
Q Consensus       149 ~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~  200 (640)
                      .+. .++ ..+.++.++..|.+.+|++... +.....+.+++.|++++|.++
T Consensus       220 ~~~-~~~-~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         220 SII-ELL-SSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             cce-ecc-hhhhhcccccccccCCceeeec-cchhccccccceecccccccc
Confidence            433 233 3456666666666666666542 344445556666666666665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=2.7e-07  Score=94.20  Aligned_cols=116  Identities=26%  Similarity=0.263  Sum_probs=85.3

Q ss_pred             hhccCCCCCCEEeCCCCcCCCCCC---CCCCCCCCcEEEcccccccccCCccC-CCCCCCCEEEcccCCCCCCCCchhcC
Q 006559           85 EVLSRLTQLRLLSLKNNLLSSSNL---NLSSWPHLKHLYLSHNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELT  160 (640)
Q Consensus        85 ~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~l~~L~~L~Ls~N~l~g~~p~~~-~~l~~L~~L~Ls~N~l~g~~p~~~~~  160 (640)
                      .....+++++.||||.|.|..+.+   -...|++|+.|+||.|+|.-...... ..+++|+.|.|+.+.|+-.--..-+.
T Consensus       140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~  219 (505)
T KOG3207|consen  140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL  219 (505)
T ss_pred             hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence            467789999999999999988654   24679999999999999975444322 36788999999999887211112235


Q ss_pred             CCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCc
Q 006559          161 RLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS  200 (640)
Q Consensus       161 ~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~  200 (640)
                      .+|+|+.|+|+.|..-+.-......+..|+.|||++|++-
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li  259 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI  259 (505)
T ss_pred             hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence            6789999999999633333333444678899999999875

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.09  E-value=4.6e-08  Score=105.13  Aligned_cols=127  Identities=29%  Similarity=0.384  Sum_probs=94.2

Q ss_pred             CCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEcc
Q 006559           92 QLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLE  171 (640)
Q Consensus        92 ~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~  171 (640)
                      .|..-+.+.|.|......+.-++.|++|||++|+|+..-  .+..|+.|++|||++|.|. .+|--....+ .|+.|.|+
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence            355667777777665556677889999999999998543  7888999999999999998 5663333344 49999999


Q ss_pred             CCcceecccCCcCCCCCCcEEEcccCcCcccC---Ccc-cCCCCCCCCCCCcccCCC
Q 006559          172 DNRFTGTLYSVNSSSRSILDFNVSNNQLSGQI---PAW-MSPFGGSSFAGNKNLCGR  224 (640)
Q Consensus       172 ~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~i---p~~-~~~~~~~~~~gn~~lcg~  224 (640)
                      +|.++..-  .+.++.+|..|||++|-|++.-   |-| +..+....+.|||--|.+
T Consensus       241 nN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  241 NNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             ccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            99998533  2446889999999999998753   211 233344567899877753

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=97.92  E-value=7.6e-05  Score=80.99  Aligned_cols=148  Identities=14%  Similarity=0.194  Sum_probs=94.2

Q ss_pred             ChHHHHHHhh-ccccccCcceEEEEEeCCCcEEEEEEeccccch-----------------------------H------
Q 006559          329 NVGDLLKSSA-ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKK-----------------------------R------  372 (640)
Q Consensus       329 ~~~~~~~~~~-~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~-----------------------------~------  372 (640)
                      .++++..... +.||.-+.|.||+|++++|+.||||+-+..-..                             +      
T Consensus       156 ~ie~if~~f~~~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L  235 (538)
T KOG1235|consen  156 PIEDIFSEFDEEPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSL  235 (538)
T ss_pred             CHHHHHHhcCcchhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhh
Confidence            5666666654 679999999999999999999999986543100                             0      


Q ss_pred             ----HHHHHHH----HHhccCCCcc---cceeEEEEc-CCeEEEEEeccCCCCHHHh--hccCCCCCCCCcCHHHHHHHH
Q 006559          373 ----EVDEWLR----VIGGLRHSNI---VSIRAYCNG-KDELFLVYDYLPHGSLHSL--LHGSRGPGRMPVDWNKRLKLA  438 (640)
Q Consensus       373 ----~~~~e~~----~l~~l~H~ni---v~l~~~~~~-~~~~~lV~Ey~~~gsL~~~--l~~~~~~~~~~l~~~~~~~i~  438 (640)
                          +|..|.+    ..+.++|-+.   |..-.++.+ .....|+||||+|..+.+.  +.+.+      ++-..+..-+
T Consensus       236 ~~ELDF~~EA~Nae~~~~~f~~~~~~~~V~VP~Vy~~~st~RVLtME~~~G~~i~Dl~~i~~~g------i~~~~i~~~l  309 (538)
T KOG1235|consen  236 PQELDFTKEAKNAERFRENFKDFSLLTYVLVPKVYWDLSTKRVLTMEYVDGIKINDLDAIDKRG------ISPHDILNKL  309 (538)
T ss_pred             HhhcchHHHHHhHHHHHHHHHhcccccceeCCeehhhcCcceEEEEEecCCccCCCHHHHHHcC------CCHHHHHHHH
Confidence                1222222    2233445551   223333333 3578999999999876554  43332      3434444433


Q ss_pred             HHHHHHHHHhhcCCCCCceecCCCCCCeEECC----CCCeEEccCCcccccCC
Q 006559          439 SDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ----LGNACISDIGVHQLFHT  487 (640)
Q Consensus       439 ~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~----~~~~kl~DfGl~~~~~~  487 (640)
                      .++..-+-+-     .+++|.|-.|-||++..    ++++.+-|||+......
T Consensus       310 ~~~~~~qIf~-----~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is~  357 (538)
T KOG1235|consen  310 VEAYLEQIFK-----TGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVISH  357 (538)
T ss_pred             HHHHHHHHHh-----cCCccCCCCCCcEEEecCCCCCccEEEEcccccccccH
Confidence            3333223333     35999999999999983    67899999999876543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.92  E-value=4.8e-07  Score=78.24  Aligned_cols=84  Identities=21%  Similarity=0.313  Sum_probs=41.3

Q ss_pred             CCCCCEEeCCCCcCCCCCCCCC-CCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEE
Q 006559           90 LTQLRLLSLKNNLLSSSNLNLS-SWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTL  168 (640)
Q Consensus        90 l~~L~~L~Ls~N~l~~~~~~~~-~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L  168 (640)
                      ...|+..+|++|.|...++.|. .++.++.|+|++|.++ .+|.++..++.|+.|++++|.|. ..| ..+..|.+|-.|
T Consensus        52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p-~vi~~L~~l~~L  128 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEP-RVIAPLIKLDML  128 (177)
T ss_pred             CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cch-HHHHHHHhHHHh
Confidence            3344444555555555444332 2334555555555554 34555555555555555555554 233 233334555555


Q ss_pred             EccCCcce
Q 006559          169 RLEDNRFT  176 (640)
Q Consensus       169 ~L~~N~l~  176 (640)
                      +..+|.+.
T Consensus       129 ds~~na~~  136 (177)
T KOG4579|consen  129 DSPENARA  136 (177)
T ss_pred             cCCCCccc
Confidence            55555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.87  E-value=3.5e-06  Score=90.84  Aligned_cols=107  Identities=30%  Similarity=0.293  Sum_probs=52.4

Q ss_pred             CCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEE
Q 006559           90 LTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLR  169 (640)
Q Consensus        90 l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~  169 (640)
                      +..+..|+|..|.+......+..+++|+.|+|..|.|... ...+..+++|++|+|++|.++...   .+..++.|+.|+
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~---~l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE---GLSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc---chhhccchhhhe
Confidence            4444455555555544323345555555555555555532 222444555555555555555322   234445555555


Q ss_pred             ccCCcceecccCCcCCCCCCcEEEcccCcCccc
Q 006559          170 LEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQ  202 (640)
Q Consensus       170 L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~  202 (640)
                      +++|.++.  ...+..+..|+.+++++|.++..
T Consensus       147 l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~i  177 (414)
T KOG0531|consen  147 LSGNLISD--ISGLESLKSLKLLDLSYNRIVDI  177 (414)
T ss_pred             eccCcchh--ccCCccchhhhcccCCcchhhhh
Confidence            55555543  12222345555555555555533

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=97.87  E-value=4.3e-05  Score=72.53  Aligned_cols=103  Identities=18%  Similarity=0.214  Sum_probs=78.7

Q ss_pred             HHHHHHhccCC-CcccceeEEEEcCCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCC
Q 006559          376 EWLRVIGGLRH-SNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA  454 (640)
Q Consensus       376 ~e~~~l~~l~H-~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~  454 (640)
                      .|.-+++.+.+ +++.+++|+|-    .++|.||.+.+++...-..-  ..-..-+|..|.+||.++.+.++++++....
T Consensus         8 ~E~lll~~l~~~~~~pk~lG~CG----~~~v~E~~~~~~~~~~~~~l--~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~~   81 (188)
T PF12260_consen    8 NEPLLLQLLQGSEPFPKLLGSCG----RFYVVEYVGAGSLYGIYRPL--SQFLQSPWEQRAKIALQLLELLEELDHGPLG   81 (188)
T ss_pred             cHHHHHHHcCCCCCCCCeeeECC----CEEEEEeecCcccccccccc--ccccccCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            46667777776 69999999994    36789999887664320000  0011358999999999999999999976545


Q ss_pred             CceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          455 HLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       455 ~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      .+.-.|++++|+-+++++++|+.|....-.
T Consensus        82 ~~~lcDv~~~nfgv~~~~~lk~iDld~v~~  111 (188)
T PF12260_consen   82 FFYLCDVSPDNFGVNDDGRLKLIDLDDVFV  111 (188)
T ss_pred             cEEEeecchHHeEEeCCCcEEEEechhcch
Confidence            588899999999999999999999876443

Proteins in this uncharacterised family are described as transmembrane proteins.

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=97.84  E-value=0.0002  Score=71.27  Aligned_cols=140  Identities=17%  Similarity=0.177  Sum_probs=81.4

Q ss_pred             ccccCc-ceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhccC-CCcccceeEEEEcCCeEEEEEeccCCCCHHHhh
Q 006559          341 LGKGCV-GATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLL  418 (640)
Q Consensus       341 iG~G~f-g~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~~l  418 (640)
                      |-.|.+ ..||+....+ ..++||...... ......|+++++.+. +--+.+++++....+..++||||+++.++.+..
T Consensus         6 ~~~g~~~~~v~~~~~~~-~~~~vk~~~~~~-~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~~   83 (244)
T cd05150           6 VTEGQSGATVYRLDGKN-PGLYLKIAPSGP-TYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAVPGVPAAALW   83 (244)
T ss_pred             cCCCCCcCeEEEEcCCC-CcEEEEecCCCc-ccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEeeCCccHhHhh
Confidence            444555 6789987654 677788765442 334566777776663 333456777776666789999999987776432


Q ss_pred             -------------------ccCCCCCCCCcCH--HHHHHH-----------------------HHHHHHHHHHhh-cCCC
Q 006559          419 -------------------HGSRGPGRMPVDW--NKRLKL-----------------------ASDSAKGLAFLH-GYNK  453 (640)
Q Consensus       419 -------------------~~~~~~~~~~l~~--~~~~~i-----------------------~~~ia~gL~yLH-~~~~  453 (640)
                                         |.... ...++..  ......                       ..++...|.... ....
T Consensus        84 ~~~~~~~~~~~l~~~l~~lH~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  162 (244)
T cd05150          84 EELEPERLVDALAEALRRLHALPV-ADCPFDRRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYAELEATRPAEED  162 (244)
T ss_pred             cccCHHHHHHHHHHHHHHHhcCCc-ccCCcchhHHHHHHHHHHHHhcCCcChhhCcHhhcCCCHHHHHHHHHhhCCCcCc
Confidence                               11110 0111110  011100                       111111111100 1123


Q ss_pred             CCceecCCCCCCeEECCCCCeEEccCCccc
Q 006559          454 AHLFHGHLSSSNIVVDQLGNACISDIGVHQ  483 (640)
Q Consensus       454 ~~ivHrdlk~~NILl~~~~~~kl~DfGl~~  483 (640)
                      +.++|+|+.|.|||++++..+.|+||+.+.
T Consensus       163 ~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~  192 (244)
T cd05150         163 LVVTHGDACLPNIIVDPGKFSGFIDLGRLG  192 (244)
T ss_pred             eEEECCCCCCccEEEeCCcEEEEEEccccc
Confidence            458999999999999998778899998664

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.83  E-value=1.8e-05  Score=55.52  Aligned_cols=36  Identities=44%  Similarity=0.745  Sum_probs=15.4

Q ss_pred             CCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcce
Q 006559          139 HLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT  176 (640)
Q Consensus       139 ~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~  176 (640)
                      +|++|+|++|+++ .+| ..+.+|++|+.|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~-~l~-~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLP-PELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHG-GHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccC-chHhCCCCCCEEEecCCCCC
Confidence            3444444444444 233 23444444444444444444

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	640
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		1e-17
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		2e-17
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		4e-15
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		6e-15
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		8e-15
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		3e-14
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		5e-11
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		6e-11
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		1e-10
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		2e-10
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-09
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-04
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		3e-07
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-07
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-07
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		8e-07
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		1e-06
1b6c_B	342	Crystal Structure Of The Cytoplasmic Domain Of The		1e-06
1py5_A	326	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		2e-06
3tzm_A	309	Tgf-Beta Receptor Type 1 In Complex With Sb431542 L		2e-06
2wot_A	306	Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)		2e-06
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		2e-06
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		2e-06
1vjy_A	303	Crystal Structure Of A Naphthyridine Inhibitor Of H		2e-06
1rw8_A	301	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		2e-06
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		2e-06
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		3e-06
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		3e-06
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		3e-06
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		3e-06
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		3e-06
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		3e-06
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		3e-06
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		3e-06
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		3e-06
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		3e-06
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		3e-06
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		4e-06
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		4e-06
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		4e-06
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		4e-06
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		4e-06
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		4e-06
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		5e-06
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		5e-06
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		5e-06
2pl0_A	289	Lck Bound To Imatinib Length = 289		5e-06
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		5e-06
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		6e-06
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		7e-06
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		8e-06
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		9e-06
3q4t_A	322	Crystal Structure Of Activin Receptor Type-Iia (Acv		1e-05
3g2f_A	336	Crystal Structure Of The Kinase Domain Of Bone Morp		1e-05
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-05
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-05
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		1e-05
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		2e-05
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		2e-05
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		2e-05
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		2e-05
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		2e-05
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		2e-05
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		2e-05
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		2e-05
3kmw_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		4e-05
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		4e-05
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		4e-05
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		4e-05
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		4e-05
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		4e-05
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		4e-05
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		4e-05
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		4e-05
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		4e-05
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		4e-05
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		4e-05
3mdy_A	337	Crystal Structure Of The Cytoplasmic Domain Of The		6e-05
1q3d_A	424	Gsk-3 Beta Complexed With Staurosporine Length = 42		6e-05
1q5k_A	414	Crystal Structure Of Glycogen Synthase Kinase 3 In		6e-05
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		6e-05
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		7e-05
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		7e-05
1i09_A	420	Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Len		7e-05
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		7e-05
1pyx_A	422	Gsk-3 Beta Complexed With Amp-Pnp Length = 422		7e-05
4acc_A	465	Gsk3b In Complex With Inhibitor Length = 465		7e-05
2o5k_A	372	Crystal Structure Of Gsk3beta In Complex With A Ben		7e-05
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		7e-05
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		7e-05
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		8e-05
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		8e-05
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		8e-05
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		8e-05
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		9e-05
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		9e-05
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		9e-05
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		9e-05
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		9e-05
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		9e-05
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		9e-05
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		9e-05
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		9e-05
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		9e-05
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		9e-05
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		9e-05
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		1e-04
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		1e-04
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		1e-04
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		1e-04
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		1e-04
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		1e-04
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		1e-04
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		1e-04
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		1e-04
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		1e-04
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		1e-04
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		1e-04
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		1e-04
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		1e-04
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		1e-04
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		1e-04
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		1e-04
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		1e-04
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		1e-04
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		1e-04
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		1e-04
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-04
3kmu_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		2e-04
3say_A	430	Crystal Structure Of Human Glycogen Synthase Kinase		2e-04
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		2e-04
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		2e-04
1r0e_A	391	Glycogen Synthase Kinase-3 Beta In Complex With 3-I		3e-04
1gng_A	378	Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With		3e-04
4afj_A	367	5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selec		3e-04
3mtf_A	301	Crystal Structure Of The Acvr1 Kinase In Complex Wi		3e-04
4dit_A	382	Crystal Structure Of Gsk3beta In Complex With A Imi		3e-04
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		3e-04
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		3e-04
3zrk_A	371	Identification Of 2-(4-Pyridyl)thienopyridinones As		3e-04
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		3e-04
3h9r_A	330	Crystal Structure Of The Kinase Domain Of Type I Ac		3e-04
3sd0_A	350	Identification Of A Glycogen Synthase Kinase-3b Inh		3e-04
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		3e-04
4dym_A	301	Crystal Structure Of The Acvr1 Kinase Domain In Com		3e-04
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		3e-04
1uv5_A	350	Glycogen Synthase Kinase 3 Beta Complexed With 6-Br		3e-04
1h8f_A	352	Glycogen Synthase Kinase 3 Beta. Length = 352		4e-04
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		4e-04
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		4e-04
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		4e-04
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		4e-04
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		4e-04
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		4e-04
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		4e-04
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		4e-04
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		4e-04
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		4e-04
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		4e-04
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		4e-04
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		4e-04
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		5e-04
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		5e-04
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		5e-04
3ekk_A	307	Insulin Receptor Kinase Complexed With An Inhibitor		5e-04
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		6e-04
1i44_A	306	Crystallographic Studies Of An Activation Loop Muta		6e-04
1p14_A	306	Crystal Structure Of A Catalytic-Loop Mutant Of The		6e-04
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		6e-04
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		6e-04
3eta_A	317	Kinase Domain Of Insulin Receptor Complexed With A		6e-04
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		6e-04
4h58_A	275	Braf In Complex With Compound 3 Length = 275		6e-04
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		6e-04
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		6e-04
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		7e-04
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		7e-04
1irk_A	306	Crystal Structure Of The Tyrosine Kinase Domain Of		8e-04
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		8e-04
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		8e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 111/231 (48%), Gaps = 22/231 (9%)
Query: 386 HSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLASDSAKGL 445
           H N++ +R +C    E  LVY Y+                + P+DW KR ++A  SA+GL
Sbjct: 94  HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPE-SQPPLDWPKRQRIALGSARGL 152
Query: 446 AFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF-----HTPFFINDA--YNAP 498
           A+LH +    + H  + ++NI++D+   A + D G+ +L      H    +     + AP
Sbjct: 153 AYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGTIGHIAP 212
Query: 499 ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA------KGDGELGIVKWVQMMGQ 552
           E         S  K  ++ DV+ +GV+LLE++TG+ A        D ++ ++ WV+ + +
Sbjct: 213 EY-------LSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLK 265
Query: 553 DESAWEVFDFELIMDKEMEEEMRXXXXXXXXXXXXXPKDRPNMSIVHRMIE 603
           ++    + D +L  + + +EE+              P +RP MS V RM+E
Sbjct: 266 EKKLEALVDVDLQGNYK-DEEVEQLIQVALLCTQSSPMERPKMSEVVRMLE 315

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 111/231 (48%), Gaps = 22/231 (9%)
Query: 386 HSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLASDSAKGL 445
           H N++ +R +C    E  LVY Y+                + P+DW KR ++A  SA+GL
Sbjct: 86  HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPE-SQPPLDWPKRQRIALGSARGL 144
Query: 446 AFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF-----HTPFFIND--AYNAP 498
           A+LH +    + H  + ++NI++D+   A + D G+ +L      H    +     + AP
Sbjct: 145 AYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGXIGHIAP 204
Query: 499 ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA------KGDGELGIVKWVQMMGQ 552
           E         S  K  ++ DV+ +GV+LLE++TG+ A        D ++ ++ WV+ + +
Sbjct: 205 EY-------LSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLK 257
Query: 553 DESAWEVFDFELIMDKEMEEEMRXXXXXXXXXXXXXPKDRPNMSIVHRMIE 603
           ++    + D +L  + + +EE+              P +RP MS V RM+E
Sbjct: 258 EKKLEALVDVDLQGNYK-DEEVEQLIQVALLCTQSSPMERPKMSEVVRMLE 307

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 21/166 (12%)
Query: 375 DEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKR 434
           D+ ++V+   +H N+V +  + +  D+L LVY Y+P              G  P+ W+ R
Sbjct: 78  DQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLD--GTPPLSWHMR 135
Query: 435 LKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV--------HQLFH 486
            K+A  +A G+ FLH   + H  H  + S+NI++D+   A ISD G+          +  
Sbjct: 136 CKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMX 192
Query: 487 TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
           +      AY APE          + +   + D+YSFGVVLLEI+TG
Sbjct: 193 SRIVGTTAYMAPEA--------LRGEITPKSDIYSFGVVLLEIITG 230

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 21/166 (12%)
Query: 375 DEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKR 434
           D+ ++V+   +H N+V +  + +  D+L LVY Y+P              G  P+ W+ R
Sbjct: 78  DQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLD--GTPPLSWHMR 135
Query: 435 LKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV--------HQLFH 486
            K+A  +A G+ FLH   + H  H  + S+NI++D+   A ISD G+          +  
Sbjct: 136 CKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMX 192
Query: 487 TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
                  AY APE          + +   + D+YSFGVVLLEI+TG
Sbjct: 193 XRIVGTTAYMAPEA--------LRGEITPKSDIYSFGVVLLEIITG 230

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 21/166 (12%)
Query: 375 DEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKR 434
           D+ ++V+   +H N+V +  + +  D+L LVY Y+P              G  P+ W+ R
Sbjct: 72  DQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLD--GTPPLSWHMR 129
Query: 435 LKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV--------HQLFH 486
            K+A  +A G+ FLH   + H  H  + S+NI++D+   A ISD G+          +  
Sbjct: 130 CKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVMX 186
Query: 487 TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
                  AY APE          + +   + D+YSFGVVLLEI+TG
Sbjct: 187 XRIVGTTAYMAPEA--------LRGEITPKSDIYSFGVVLLEIITG 224

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 21/166 (12%)
Query: 375 DEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKR 434
           D+ ++V    +H N+V +  + +  D+L LVY Y P              G  P+ W+ R
Sbjct: 69  DQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLSCLD--GTPPLSWHXR 126
Query: 435 LKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV--------HQLFH 486
            K+A  +A G+ FLH   + H  H  + S+NI++D+   A ISD G+          +  
Sbjct: 127 CKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVXX 183
Query: 487 TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
           +      AY APE          + +   + D+YSFGVVLLEI+TG
Sbjct: 184 SRIVGTTAYXAPEA--------LRGEITPKSDIYSFGVVLLEIITG 221

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
Query: 385 RHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLASDSAKG 444
           RH ++VS+  +C+ ++E+ L+Y Y+              P  M + W +RL++   +A+G
Sbjct: 93  RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLP-TMSMSWEQRLEICIGAARG 151
Query: 445 LAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ------LFHTPFFINDAYNAP 498
           L +LH      + H  + S NI++D+     I+D G+ +        H    +       
Sbjct: 152 LHYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVKGT---- 204
Query: 499 ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG----ELGIVKWVQMMGQDE 554
            L + +   + + +  ++ DVYSFGVVL E+L  + A         + + +W      + 
Sbjct: 205 -LGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNG 263
Query: 555 SAWEVFDFELIMDKEMEEEMRXXXXXXXXXXXXXPKDRPNM 595
              ++ D  L  DK   E +R              +DRP+M
Sbjct: 264 QLEQIVDPNL-ADKIRPESLRKFGDTAVKCLALSSEDRPSM 303

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
Query: 385 RHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLASDSAKG 444
           RH ++VS+  +C+ ++E+ L+Y Y+              P  M + W +RL++   +A+G
Sbjct: 93  RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPT-MSMSWEQRLEICIGAARG 151
Query: 445 LAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ------LFHTPFFINDAYNAP 498
           L +LH      + H  + S NI++D+     I+D G+ +        H    +       
Sbjct: 152 LHYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVKGT---- 204
Query: 499 ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG----ELGIVKWVQMMGQDE 554
            L + +   + + +  ++ DVYSFGVVL E+L  + A         + + +W      + 
Sbjct: 205 -LGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNG 263
Query: 555 SAWEVFDFELIMDKEMEEEMRXXXXXXXXXXXXXPKDRPNM 595
              ++ D  L  DK   E +R              +DRP+M
Sbjct: 264 QLEQIVDPNL-ADKIRPESLRKFGDTAVKCLALSSEDRPSM 303

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 33/243 (13%)
Query: 305 YGGARDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKXXXXXXXXXXXXX 364
           + GA DG D++       C+   +          E +G G  G  ++             
Sbjct: 23  FQGAMDGDDMD----IPWCDLNIK----------EKIGAGSFGTVHRAEWHGSDVAVKIL 68
Query: 365 XXXXXXXXXXDEWLR---VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXX 421
                     +E+LR   ++  LRH NIV           L +V +YL            
Sbjct: 69  MEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKS 128
Query: 422 XXPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV 481
               R  +D  +RL +A D AKG+ +LH  N   + H +L S N++VD+     + D G+
Sbjct: 129 G--AREQLDERRRLSMAYDVAKGMNYLHNRNPP-IVHRNLKSPNLLVDKKYTVKVCDFGL 185
Query: 482 HQLFHTPFFINDA------YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA 535
            +L  + F  + +      + APE+  +  +N       ++ DVYSFGV+L E+ T +  
Sbjct: 186 SRLKASTFLSSKSAAGTPEWMAPEVLRDEPSN-------EKSDVYSFGVILWELATLQQP 238
Query: 536 KGD 538
            G+
Sbjct: 239 WGN 241

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 98/243 (40%), Gaps = 33/243 (13%)
Query: 305 YGGARDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKXXXXXXXXXXXXX 364
           + GA DG D++       C+   +          E +G G  G  ++             
Sbjct: 23  FQGAMDGDDMD----IPWCDLNIK----------EKIGAGSFGTVHRAEWHGSDVAVKIL 68
Query: 365 XXXXXXXXXXDEWLR---VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXX 421
                     +E+LR   ++  LRH NIV           L +V +YL            
Sbjct: 69  MEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKS 128
Query: 422 XXPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV 481
               R  +D  +RL +A D AKG+ +LH  N   + H  L S N++VD+     + D G+
Sbjct: 129 G--AREQLDERRRLSMAYDVAKGMNYLHNRNPP-IVHRDLKSPNLLVDKKYTVKVCDFGL 185
Query: 482 HQLFHTPFFINDA------YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA 535
            +L  + F  +        + APE+  +  +N       ++ DVYSFGV+L E+ T +  
Sbjct: 186 SRLKASXFLXSKXAAGTPEWMAPEVLRDEPSN-------EKSDVYSFGVILWELATLQQP 238
Query: 536 KGD 538
            G+
Sbjct: 239 WGN 241

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 78/191 (40%), Gaps = 10/191 (5%)
Query: 26  DISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTC--NPSTHRVIKLVLEDLDLTGP 83
           D   LL  K  + G+  +LSSW+ +TD C  +W GV C  +  T+RV  L L  L+L  P
Sbjct: 7   DKQALLQIKKDL-GNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP 65
Query: 84  AEVXXXXXXXXXXXXX-----XXXXXXXXXXXXXWPHLKHLYLSHNRFTGTFPSGVSSLR 138
             +                                  L +LY++H   +G  P  +S ++
Sbjct: 66  YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 139 HLRRVDLSHNAYEGEIPMXXXXXXXXXXXXXXXDNRFTGTLY-SVNSSSRSILDFNVSNN 197
            L  +D S+NA  G +P                 NR +G +  S  S S+      +S N
Sbjct: 126 TLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 198 QLSGQIPAWMS 208
           +L+G+IP   +
Sbjct: 185 RLTGKIPPTFA 195

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 25/134 (18%)
Query: 119 LYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMXXXXXXXXXXXXXXXD------ 172
           + +S NR TG  P   ++L +L  VDLS N  EG+  +               +      
Sbjct: 179 MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237
Query: 173 ----------------NRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAW--MSPFGGSS 214
                           NR  GTL    +  + +   NVS N L G+IP    +  F  S+
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297
Query: 215 FAGNKNLCGRPLPS 228
           +A NK LCG PLP+
Sbjct: 298 YANNKCLCGSPLPA 311

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 25/168 (14%)
Query: 379 RVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLA 438
           ++   L+H NI+++R  C  +  L LV ++               P  + V+W      A
Sbjct: 58  KLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNW------A 111
Query: 439 SDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ------LGNAC--ISDIGVHQLFHTPFF 490
              A+G+ +LH      + H  L SSNI++ Q      L N    I+D G+ + +H    
Sbjct: 112 VQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTK 171
Query: 491 INDA----YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM 534
           ++ A    + APE+            F +  DV+S+GV+L E+LTG++
Sbjct: 172 MSAAGAYAWMAPEV-------IRASMFSKGSDVWSYGVLLWELLTGEV 212

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 48/116 (41%), Gaps = 27/116 (23%)
Query: 114 PHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMXXXXXXXXXXXXXXXDN 173
           P+L  L L HN  +G+ P  V  LR L  +DLS N  +G IP                  
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM--------------- 700
Query: 174 RFTGTLYSVNSSSRSILDFNVSNNQLSGQIP--AWMSPFGGSSFAGNKNLCGRPLP 227
                     S+   + + ++SNN LSG IP       F  + F  N  LCG PLP
Sbjct: 701 ----------SALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP 746

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 48/116 (41%), Gaps = 27/116 (23%)
Query: 114 PHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMXXXXXXXXXXXXXXXDN 173
           P+L  L L HN  +G+ P  V  LR L  +DLS N  +G IP                  
Sbjct: 653 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM--------------- 697
Query: 174 RFTGTLYSVNSSSRSILDFNVSNNQLSGQIP--AWMSPFGGSSFAGNKNLCGRPLP 227
                     S+   + + ++SNN LSG IP       F  + F  N  LCG PLP
Sbjct: 698 ----------SALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP 743

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 35/215 (16%)
Query: 338 AELLGKGCVGATYKXXXXXXXXXXXXXXXXXXXXXXXDEWLR---VIGGLRHSNIVSIRA 394
            E+LGKGC G   K                         +L+   V+  L H N++    
Sbjct: 15  GEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIG 74
Query: 395 YCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA 454
                  L  + +Y+                + P  W++R+  A D A G+A+LH  N  
Sbjct: 75  VLYKDKRLNFITEYIKGGTLRGIIKSMD--SQYP--WSQRVSFAKDIASGMAYLHSMN-- 128
Query: 455 HLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE-----LKFNNNNNYS 509
            + H  L+S N +V +  N  ++D G+ +L      + D    PE      K +    Y+
Sbjct: 129 -IIHRDLNSHNCLVRENKNVVVADFGLARL------MVDEKTQPEGLRSLKKPDRKKRYT 181
Query: 510 Q--------------RKFWQRCDVYSFGVVLLEIL 530
                          R + ++ DV+SFG+VL EI+
Sbjct: 182 VVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEII 216

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 14/159 (8%)
Query: 384 LRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRM----------PVDWNK 433
           L+H +IV     C     L +V++Y+                ++          P+   +
Sbjct: 100 LQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQ 159
Query: 434 RLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ-LFHTPFFIN 492
            L +AS  A G+ +L G    H  H  L++ N +V Q     I D G+ + ++ T ++  
Sbjct: 160 LLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRV 216
Query: 493 DAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
                  +++    +   RKF    DV+SFGVVL EI T
Sbjct: 217 GGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFT 255

>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I Tgf-Beta Receptor In Complex With Fkbp12 Length = 342

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 26/165 (15%)
Query: 384 LRHSNIVSIRAYCNGKD----ELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           LRH NI+   A  N  +    +L+LV DY                 R  V     +KLA 
Sbjct: 93  LRHENILGFIAADNKDNGTWTQLWLVSDY------HEHGSLFDYLNRYTVTVEGMIKLAL 146
Query: 440 DSAKGLAFLH-----GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA 494
            +A GLA LH        K  + H  L S NI+V + G  CI+D+G+     +     D 
Sbjct: 147 STASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDI 206
Query: 495 ----------YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEI 529
                     Y APE+  +++ N    + ++R D+Y+ G+V  EI
Sbjct: 207 APNHRVGTKRYMAPEV-LDDSINMKHFESFKRADIYAMGLVFWEI 250

>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Inhibitor Length = 326

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 26/165 (15%)
Query: 384 LRHSNIVSIRAYCNGKD----ELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           LRH NI+   A  N  +    +L+LV DY                 R  V     +KLA 
Sbjct: 80  LRHENILGFIAADNKDNGTWTQLWLVSDY------HEHGSLFDYLNRYTVTVEGMIKLAL 133
Query: 440 DSAKGLAFLH-----GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA 494
            +A GLA LH        K  + H  L S NI+V + G  CI+D+G+     +     D 
Sbjct: 134 STASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDI 193
Query: 495 ----------YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEI 529
                     Y APE+  +++ N    + ++R D+Y+ G+V  EI
Sbjct: 194 APNHRVGTKRYMAPEV-LDDSINMKHFESFKRADIYAMGLVFWEI 237

>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542 Length = 309

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 26/165 (15%)
Query: 384 LRHSNIVSIRAYCNGKD----ELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           LRH NI+   A  N  +    +L+LV DY                 R  V     +KLA 
Sbjct: 60  LRHENILGFIAADNKDNGTWTQLWLVSDY------HEHGSLFDYLNRYTVTVEGMIKLAL 113
Query: 440 DSAKGLAFLH-----GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA 494
            +A GLA LH        K  + H  L S NI+V + G  CI+D+G+     +     D 
Sbjct: 114 STASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDI 173
Query: 495 ----------YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEI 529
                     Y APE+  +++ N    + ++R D+Y+ G+V  EI
Sbjct: 174 APNHRVGTKRYMAPEV-LDDSINMKHFESFKRADIYAMGLVFWEI 217

>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3- Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine Length = 306

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 26/165 (15%)
Query: 384 LRHSNIVSIRAYCNGKD----ELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           LRH NI+   A  N  +    +L+LV DY                 R  V     +KLA 
Sbjct: 57  LRHENILGFIAADNKDNGTWTQLWLVSDY------HEHGSLFDYLNRYTVTVEGMIKLAL 110
Query: 440 DSAKGLAFLH-----GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA 494
            +A GLA LH        K  + H  L S NI+V + G  CI+D+G+     +     D 
Sbjct: 111 STASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDI 170
Query: 495 ----------YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEI 529
                     Y APE+  +++ N    + ++R D+Y+ G+V  EI
Sbjct: 171 APNHRVGTKRYMAPEV-LDDSINMKHFESFKRADIYAMGLVFWEI 214

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 14/159 (8%)
Query: 384 LRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRM----------PVDWNK 433
           L+H +IV     C     L +V++Y+                ++          P+   +
Sbjct: 71  LQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQ 130
Query: 434 RLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ-LFHTPFFIN 492
            L +AS  A G+ +L G    H  H  L++ N +V Q     I D G+ + ++ T ++  
Sbjct: 131 LLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRV 187
Query: 493 DAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
                  +++    +   RKF    DV+SFGVVL EI T
Sbjct: 188 GGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFT 226

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 14/159 (8%)
Query: 384 LRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRM----------PVDWNK 433
           L+H +IV     C     L +V++Y+                ++          P+   +
Sbjct: 77  LQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQ 136
Query: 434 RLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ-LFHTPFFIN 492
            L +AS  A G+ +L G    H  H  L++ N +V Q     I D G+ + ++ T ++  
Sbjct: 137 LLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRV 193
Query: 493 DAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
                  +++    +   RKF    DV+SFGVVL EI T
Sbjct: 194 GGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFT 232

>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human Tgf- Beta Type I Receptor Length = 303

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 26/165 (15%)
Query: 384 LRHSNIVSIRAYCNGKD----ELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           LRH NI+   A  N  +    +L+LV DY                 R  V     +KLA 
Sbjct: 54  LRHENILGFIAADNKDNGTWTQLWLVSDY------HEHGSLFDYLNRYTVTVEGMIKLAL 107
Query: 440 DSAKGLAFLH-----GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA 494
            +A GLA LH        K  + H  L S NI+V + G  CI+D+G+     +     D 
Sbjct: 108 STASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDI 167
Query: 495 ----------YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEI 529
                     Y APE+  +++ N    + ++R D+Y+ G+V  EI
Sbjct: 168 APNHRVGTKRYMAPEV-LDDSINMKHFESFKRADIYAMGLVFWEI 211

>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp Site Inhibitor Length = 301

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 26/165 (15%)
Query: 384 LRHSNIVSIRAYCNGKD----ELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           LRH NI+   A  N  +    +L+LV DY                 R  V     +KLA 
Sbjct: 55  LRHENILGFIAADNKDNGTWTQLWLVSDY------HEHGSLFDYLNRYTVTVEGMIKLAL 108
Query: 440 DSAKGLAFLH-----GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA 494
            +A GLA LH        K  + H  L S NI+V + G  CI+D+G+     +     D 
Sbjct: 109 STASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDI 168
Query: 495 ----------YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEI 529
                     Y APE+  +++ N    + ++R D+Y+ G+V  EI
Sbjct: 169 APNHRVGTKRYMAPEV-LDDSINMKHFESFKRADIYAMGLVFWEI 212

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 11/158 (6%)
Query: 378 LRVIGGLRHSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           + ++  L+H NIV  +  C   G+  L L+ +YLP               +  +D  K L
Sbjct: 62  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH----KERIDHIKLL 117
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF--HTPFFIND 493
           +  S   KG+ +L         H  L++ NI+V+      I D G+ ++      FF   
Sbjct: 118 QYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVK 174
Query: 494 AYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
                 + +    + ++ KF    DV+SFGVVL E+ T
Sbjct: 175 EPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 212

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 33/169 (19%)
Query: 378 LRVIGGLRHSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           + ++  L+H NIV  +  C   G+  L L+ +YLP               +  +D  K L
Sbjct: 63  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH----KERIDHIKLL 118
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---------- 485
           +  S   KG+ +L         H +L++ NI+V+      I D G+ ++           
Sbjct: 119 QYTSQICKGMEYL---GTKRYIHRNLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVK 175
Query: 486 ---HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
               +P F    + APE       + ++ KF    DV+SFGVVL E+ T
Sbjct: 176 EPGESPIF----WYAPE-------SLTESKFSVASDVWSFGVVLYELFT 213

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 15/164 (9%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKR----- 434
           ++  L+H +IV     C   D L +V++Y+                 + VD   R     
Sbjct: 70  LLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGE 129
Query: 435 ------LKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ-LFHT 487
                 L +AS  A G+ +L      H  H  L++ N +V       I D G+ + ++ T
Sbjct: 130 LGLSQMLHIASQIASGMVYL---ASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYST 186
Query: 488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
            ++    +    +++    +   RKF    DV+SFGV+L EI T
Sbjct: 187 DYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFT 230

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 378 LRVIGGLRHSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           + ++  L+H NIV  +  C   G+  L L+ +YLP               +  +D  K L
Sbjct: 69  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH----KERIDHIKLL 124
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---------- 485
           +  S   KG+ +L         H  L++ NI+V+      I D G+ ++           
Sbjct: 125 QYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVK 181
Query: 486 ---HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
               +P F    + APE       + ++ KF    DV+SFGVVL E+ T
Sbjct: 182 EPGESPIF----WYAPE-------SLTESKFSVASDVWSFGVVLYELFT 219

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 378 LRVIGGLRHSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           + ++  L+H NIV  +  C   G+  L L+ +YLP               +  +D  K L
Sbjct: 65  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH----KERIDHIKLL 120
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---------- 485
           +  S   KG+ +L         H  L++ NI+V+      I D G+ ++           
Sbjct: 121 QYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVK 177
Query: 486 ---HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
               +P F    + APE       + ++ KF    DV+SFGVVL E+ T
Sbjct: 178 EPGESPIF----WYAPE-------SLTESKFSVASDVWSFGVVLYELFT 215

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 378 LRVIGGLRHSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           + ++  L+H NIV  +  C   G+  L L+ +YLP               +  +D  K L
Sbjct: 93  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH----KERIDHIKLL 148
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---------- 485
           +  S   KG+ +L         H  L++ NI+V+      I D G+ ++           
Sbjct: 149 QYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVK 205
Query: 486 ---HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
               +P F    + APE       + ++ KF    DV+SFGVVL E+ T
Sbjct: 206 EPGESPIF----WYAPE-------SLTESKFSVASDVWSFGVVLYELFT 243

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 378 LRVIGGLRHSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           + ++  L+H NIV  +  C   G+  L L+ +YLP               +  +D  K L
Sbjct: 67  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH----KERIDHIKLL 122
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---------- 485
           +  S   KG+ +L         H  L++ NI+V+      I D G+ ++           
Sbjct: 123 QYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVK 179
Query: 486 ---HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
               +P F    + APE       + ++ KF    DV+SFGVVL E+ T
Sbjct: 180 EPGESPIF----WYAPE-------SLTESKFSVASDVWSFGVVLYELFT 217

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 378 LRVIGGLRHSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           + ++  L+H NIV  +  C   G+  L L+ +YLP               +  +D  K L
Sbjct: 80  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH----KERIDHIKLL 135
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---------- 485
           +  S   KG+ +L         H  L++ NI+V+      I D G+ ++           
Sbjct: 136 QYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVK 192
Query: 486 ---HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
               +P F    + APE       + ++ KF    DV+SFGVVL E+ T
Sbjct: 193 EPGESPIF----WYAPE-------SLTESKFSVASDVWSFGVVLYELFT 230

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 378 LRVIGGLRHSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           + ++  L+H NIV  +  C   G+  L L+ +YLP               +  +D  K L
Sbjct: 62  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH----KERIDHIKLL 117
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---------- 485
           +  S   KG+ +L         H  L++ NI+V+      I D G+ ++           
Sbjct: 118 QYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVK 174
Query: 486 ---HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
               +P F    + APE       + ++ KF    DV+SFGVVL E+ T
Sbjct: 175 EPGESPIF----WYAPE-------SLTESKFSVASDVWSFGVVLYELFT 212

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 378 LRVIGGLRHSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           + ++  L+H NIV  +  C   G+  L L+ +YLP               +  +D  K L
Sbjct: 62  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH----KERIDHIKLL 117
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---------- 485
           +  S   KG+ +L         H  L++ NI+V+      I D G+ ++           
Sbjct: 118 QYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVK 174
Query: 486 ---HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
               +P F    + APE       + ++ KF    DV+SFGVVL E+ T
Sbjct: 175 EPGESPIF----WYAPE-------SLTESKFSVASDVWSFGVVLYELFT 212

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 378 LRVIGGLRHSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           + ++  L+H NIV  +  C   G+  L L+ +YLP               +  +D  K L
Sbjct: 68  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH----KERIDHIKLL 123
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---------- 485
           +  S   KG+ +L         H  L++ NI+V+      I D G+ ++           
Sbjct: 124 QYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVK 180
Query: 486 ---HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
               +P F    + APE       + ++ KF    DV+SFGVVL E+ T
Sbjct: 181 EPGESPIF----WYAPE-------SLTESKFSVASDVWSFGVVLYELFT 218

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 378 LRVIGGLRHSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           + ++  L+H NIV  +  C   G+  L L+ +YLP               +  +D  K L
Sbjct: 60  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH----KERIDHIKLL 115
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---------- 485
           +  S   KG+ +L         H  L++ NI+V+      I D G+ ++           
Sbjct: 116 QYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVK 172
Query: 486 ---HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
               +P F    + APE       + ++ KF    DV+SFGVVL E+ T
Sbjct: 173 EPGESPIF----WYAPE-------SLTESKFSVASDVWSFGVVLYELFT 210

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 428 PVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN-----ACISDIGV- 481
           P+ W+ +L+L  D A G+ ++   N   + H  L S NI +  L       A ++D G+ 
Sbjct: 118 PIKWSVKLRLMLDIALGIEYMQNQNPP-IVHRDLRSPNIFLQSLDENAPVCAKVADFGLS 176
Query: 482 HQLFHTP--FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG 539
            Q  H+      N  + APE       +Y+++      D YSF ++L  ILTG+    + 
Sbjct: 177 QQSVHSVSGLLGNFQWMAPETIGAEEESYTEK-----ADTYSFAMILYTILTGEGPFDEY 231
Query: 540 ELGIVKWVQMMGQD 553
             G +K++ M+ ++
Sbjct: 232 SYGKIKFINMIREE 245

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 378 LRVIGGLRHSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           + ++  L+H NIV  +  C   G+  L L+ +YLP               +  +D  K L
Sbjct: 66  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH----KERIDHIKLL 121
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---------- 485
           +  S   KG+ +L         H  L++ NI+V+      I D G+ ++           
Sbjct: 122 QYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVK 178
Query: 486 ---HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
               +P F    + APE       + ++ KF    DV+SFGVVL E+ T
Sbjct: 179 EPGESPIF----WYAPE-------SLTESKFSVASDVWSFGVVLYELFT 216

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 378 LRVIGGLRHSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           + ++  L+H NIV  +  C   G+  L L+ +YLP               +  +D  K L
Sbjct: 61  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH----KERIDHIKLL 116
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---------- 485
           +  S   KG+ +L         H  L++ NI+V+      I D G+ ++           
Sbjct: 117 QYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVK 173
Query: 486 ---HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
               +P F    + APE       + ++ KF    DV+SFGVVL E+ T
Sbjct: 174 EPGESPIF----WYAPE-------SLTESKFSVASDVWSFGVVLYELFT 211

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 17/157 (10%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           ++  L+H  +V + A    ++ ++++ +Y+              P  + +  NK L +A+
Sbjct: 57  LMKQLQHQRLVRLYAVVT-QEPIYIITEYM---ENGSLVDFLKTPSGIKLTINKLLDMAA 112
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             A+G+AF+   N     H +L ++NI+V    +  I+D G+ +L       ++ Y A E
Sbjct: 113 QIAEGMAFIEERN---YIHRNLRAANILVSDTLSCKIADFGLARLIE-----DNEYTARE 164
Query: 500 -----LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
                +K+      +   F  + DV+SFG++L EI+T
Sbjct: 165 GAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 201

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 378 LRVIGGLRHSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           + ++  L+H NIV  +  C   G+  L L+ +YLP               +  +D  K L
Sbjct: 80  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH----KERIDHIKLL 135
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---------- 485
           +  S   KG+ +L         H  L++ NI+V+      I D G+ ++           
Sbjct: 136 QYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVK 192
Query: 486 ---HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
               +P F    + APE       + ++ KF    DV+SFGVVL E+ T
Sbjct: 193 EPGESPIF----WYAPE-------SLTESKFSVASDVWSFGVVLYELFT 230

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 33/169 (19%)
Query: 378 LRVIGGLRHSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           + ++  L+H NIV  +  C   G+  L L+ +YLP                  +D  K L
Sbjct: 65  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQAHAER----IDHIKLL 120
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---------- 485
           +  S   KG+ +L         H  L++ NI+V+      I D G+ ++           
Sbjct: 121 QYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVK 177
Query: 486 ---HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
               +P F    + APE       + ++ KF    DV+SFGVVL E+ T
Sbjct: 178 EPGESPIF----WYAPE-------SLTESKFSVASDVWSFGVVLYELFT 215

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 17/157 (10%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           ++  L+H  +V + A    ++ ++++ +Y+              P  + +  NK L +A+
Sbjct: 66  LMKQLQHQRLVRLYAVVT-QEPIYIITEYM---ENGSLVDFLKTPSGIKLTINKLLDMAA 121
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             A+G+AF+   N     H  L ++NI+V    +  I+D G+ +L       ++ Y A E
Sbjct: 122 QIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIE-----DNEYTARE 173
Query: 500 -----LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
                +K+      +   F  + DV+SFG++L EI+T
Sbjct: 174 GAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 210

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 17/157 (10%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           ++  L+H  +V + A    ++ ++++ +Y+              P  + +  NK L +A+
Sbjct: 67  LMKQLQHQRLVRLYAVVT-QEPIYIITEYM---ENGSLVDFLKTPSGIKLTINKLLDMAA 122
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             A+G+AF+   N     H  L ++NI+V    +  I+D G+ +L       ++ Y A E
Sbjct: 123 QIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIE-----DNEYTARE 174
Query: 500 -----LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
                +K+      +   F  + DV+SFG++L EI+T
Sbjct: 175 GAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 211

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 428 PVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN-----ACISDIGV- 481
           P+ W+ +L+L  D A G+ ++   N   + H  L S NI +  L       A ++D G  
Sbjct: 118 PIKWSVKLRLMLDIALGIEYMQNQNPP-IVHRDLRSPNIFLQSLDENAPVCAKVADFGTS 176
Query: 482 HQLFHTP--FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG 539
            Q  H+      N  + APE       +Y+++      D YSF ++L  ILTG+    + 
Sbjct: 177 QQSVHSVSGLLGNFQWMAPETIGAEEESYTEK-----ADTYSFAMILYTILTGEGPFDEY 231
Query: 540 ELGIVKWVQMMGQD 553
             G +K++ M+ ++
Sbjct: 232 SYGKIKFINMIREE 245

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 17/157 (10%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           ++  L+H  +V + A    ++ ++++ +Y+              P  + +  NK L +A+
Sbjct: 71  LMKQLQHQRLVRLYAVVT-QEPIYIITEYM---ENGSLVDFLKTPSGIKLTINKLLDMAA 126
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             A+G+AF+   N     H  L ++NI+V    +  I+D G+ +L       ++ Y A E
Sbjct: 127 QIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIE-----DNEYTARE 178
Query: 500 -----LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
                +K+      +   F  + DV+SFG++L EI+T
Sbjct: 179 GAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 215

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 17/157 (10%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           ++  L+H  +V + A    ++ ++++ +Y+              P  + +  NK L +A+
Sbjct: 61  LMKQLQHQRLVRLYAVVT-QEPIYIITEYM---ENGSLVDFLKTPSGIKLTINKLLDMAA 116
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             A+G+AF+   N     H  L ++NI+V    +  I+D G+ +L       ++ Y A E
Sbjct: 117 QIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIE-----DNEYTARE 168
Query: 500 -----LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
                +K+      +   F  + DV+SFG++L EI+T
Sbjct: 169 GAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 17/157 (10%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           ++  L+H  +V + A    ++ ++++ +Y+              P  + +  NK L +A+
Sbjct: 56  LMKQLQHQRLVRLYAVVT-QEPIYIITEYM---ENGSLVDFLKTPSGIKLTINKLLDMAA 111
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             A+G+AF+   N     H  L ++NI+V    +  I+D G+ +L       ++ Y A E
Sbjct: 112 QIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIE-----DNEYTARE 163
Query: 500 -----LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
                +K+      +   F  + DV+SFG++L EI+T
Sbjct: 164 GAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 200

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 15/157 (9%)
Query: 380 VIGGLRHSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           ++  L H +I+  +  C   G+  L LV +Y+P               R  +   + L  
Sbjct: 69  ILRTLYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYLP------RHSIGLAQLLLF 122
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---HTPFFINDA 494
           A    +G+A+LH     H  H +L++ N+++D      I D G+ +     H  + + + 
Sbjct: 123 AQQICEGMAYLHA---QHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVRED 179
Query: 495 YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
            ++P   +       + KF+   DV+SFGV L E+LT
Sbjct: 180 GDSPVFWYAPEC-LKEYKFYYASDVWSFGVTLYELLT 215

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 378 LRVIGGLRHSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           + ++  L+H NIV  +  C   G+  L L+ ++LP               +  +D  K L
Sbjct: 65  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEFLPYGSLREYLQKH----KERIDHIKLL 120
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---------- 485
           +  S   KG+ +L         H  L++ NI+V+      I D G+ ++           
Sbjct: 121 QYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVK 177
Query: 486 ---HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
               +P F    + APE       + ++ KF    DV+SFGVVL E+ T
Sbjct: 178 EPGESPIF----WYAPE-------SLTESKFSVASDVWSFGVVLYELFT 215

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 15/157 (9%)
Query: 380 VIGGLRHSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           ++  L H +I+  +  C   G+  L LV +Y+P               R  +   + L  
Sbjct: 69  ILRTLYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYLP------RHSIGLAQLLLF 122
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---HTPFFINDA 494
           A    +G+A+LH     H  H +L++ N+++D      I D G+ +     H  + + + 
Sbjct: 123 AQQICEGMAYLHS---QHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVRED 179
Query: 495 YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
            ++P   +       + KF+   DV+SFGV L E+LT
Sbjct: 180 GDSPVFWYAPEC-LKEYKFYYASDVWSFGVTLYELLT 215

>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 18/126 (14%)
Query: 429 VDWNKRLKLASDSAKGLAFLH----GYNKAH---LFHGHLSSSNIVVDQLGNACISDIGV 481
           V WN+   +A   A+GLA+LH    G    H   + H  + S N+++     ACI+D G+
Sbjct: 118 VSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGL 177
Query: 482 HQLFHTPFFINDA--------YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
              F       D         Y APE+      N+ QR  + R D+Y+ G+VL E L  +
Sbjct: 178 ALKFEAGKSAGDTHGQVGTRRYMAPEV-LEGAINF-QRDAFLRIDMYAMGLVLWE-LASR 234
Query: 534 MAKGDG 539
               DG
Sbjct: 235 CTAADG 240

>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A Resolution Length = 336

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 76/217 (35%), Gaps = 31/217 (14%)
Query: 339 ELLGKGCVGATYKXXXXXXXXXXXXXXXXXXXXXXXDEWLRVIGGLRHSNIVSI-----R 393
           EL+G+G  GA YK                       ++ +  +  + H NI        R
Sbjct: 19  ELIGRGRYGAVYKGSLDERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDER 78
Query: 394 AYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLASDSAKGLAFLH---- 449
              +G+ E  LV +Y P                   DW    +LA    +GLA+LH    
Sbjct: 79  VTADGRMEYLLVMEYYPNGSLXKYLSLHTS------DWVSSCRLAHSVTRGLAYLHTELP 132
Query: 450 --GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA------------- 494
              + K  + H  L+S N++V   G   ISD G+         +                
Sbjct: 133 RGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTI 192
Query: 495 -YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEIL 530
            Y APE+     N        ++ D+Y+ G++  EI 
Sbjct: 193 RYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIF 229

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 18/163 (11%)
Query: 377 WLRVIGGLR---HSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDW 431
           W R I  LR   H +IV  +  C   G+  + LV +Y+P               R  V  
Sbjct: 58  WQREIEILRTLYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYLP------RHCVGL 111
Query: 432 NKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---HTP 488
            + L  A    +G+A+LH     H  H  L++ N+++D      I D G+ +     H  
Sbjct: 112 AQLLLFAQQICEGMAYLHA---QHYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEY 168
Query: 489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           + + +  ++P   +       + KF+   DV+SFGV L E+LT
Sbjct: 169 YRVREDGDSPVFWYAPEC-LKECKFYYASDVWSFGVTLYELLT 210

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 18/163 (11%)
Query: 377 WLRVIGGLR---HSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDW 431
           W R I  LR   H +IV  +  C   G+  + LV +Y+P               R  V  
Sbjct: 57  WQREIEILRTLYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYLP------RHCVGL 110
Query: 432 NKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---HTP 488
            + L  A    +G+A+LH     H  H  L++ N+++D      I D G+ +     H  
Sbjct: 111 AQLLLFAQQICEGMAYLHA---QHYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEY 167
Query: 489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           + + +  ++P   +       + KF+   DV+SFGV L E+LT
Sbjct: 168 YRVREDGDSPVFWYAPEC-LKECKFYYASDVWSFGVTLYELLT 209

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 13/159 (8%)
Query: 378 LRVIGGLRHSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           + ++  L H NIV  +  C  +G + + L+ ++LP               +  ++  ++L
Sbjct: 74  IEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPK----NKNKINLKQQL 129
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---PFFIN 492
           K A    KG+ +L         H  L++ N++V+      I D G+ +   T      + 
Sbjct: 130 KYAVQICKGMDYL---GSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVK 186
Query: 493 DAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           D  ++P   +       Q KF+   DV+SFGV L E+LT
Sbjct: 187 DDRDSPVFWYAPEC-LMQSKFYIASDVWSFGVTLHELLT 224

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 380 VIGGLRHSNIVSIRAYCN--GKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           ++  L H +I+  +  C   G   L LV +Y+P               R  +   + L  
Sbjct: 86  ILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLP------RHSIGLAQLLLF 139
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---HTPFFINDA 494
           A    +G+A+LH     H  H  L++ N+++D      I D G+ +     H  + + + 
Sbjct: 140 AQQICEGMAYLHA---QHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEXYRVRED 196
Query: 495 YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
            ++P   +       + KF+   DV+SFGV L E+LT
Sbjct: 197 GDSPVFWYAPEC-LKEYKFYYASDVWSFGVTLYELLT 232

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 428 PVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN-----ACISDIGV- 481
           P+ W+ +L+L  D A G+ ++   N   + H  L S NI +  L       A ++D  + 
Sbjct: 118 PIKWSVKLRLMLDIALGIEYMQNQNPP-IVHRDLRSPNIFLQSLDENAPVCAKVADFSLS 176
Query: 482 HQLFHTP--FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG 539
            Q  H+      N  + APE       +Y+++      D YSF ++L  ILTG+    + 
Sbjct: 177 QQSVHSVSGLLGNFQWMAPETIGAEEESYTEK-----ADTYSFAMILYTILTGEGPFDEY 231
Query: 540 ELGIVKWVQMMGQD 553
             G +K++ M+ ++
Sbjct: 232 SYGKIKFINMIREE 245

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 13/159 (8%)
Query: 378 LRVIGGLRHSNIVSIRAYC--NGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           + ++  L H NIV  +  C  +G + + L+ ++LP               +  ++  ++L
Sbjct: 62  IEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPK----NKNKINLKQQL 117
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---PFFIN 492
           K A    KG+ +L         H  L++ N++V+      I D G+ +   T      + 
Sbjct: 118 KYAVQICKGMDYL---GSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVK 174
Query: 493 DAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           D  ++P   +       Q KF+   DV+SFGV L E+LT
Sbjct: 175 DDRDSPVFWYAPEC-LMQSKFYIASDVWSFGVTLHELLT 212

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 33/169 (19%)
Query: 378 LRVIGGLRHSNIVSIR--AYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           ++++  L    IV  R  +Y  G+ EL LV +YLP               R  +D ++ L
Sbjct: 59  IQILKALHSDFIVKYRGVSYGPGRPELRLVMEYLPSGCLRDFLQRH----RARLDASRLL 114
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---------- 485
             +S   KG+ +L         H  L++ NI+V+   +  I+D G+ +L           
Sbjct: 115 LYSSQICKGMEYL---GSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDXXVVR 171
Query: 486 ---HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
               +P F    + APE       + S   F ++ DV+SFGVVL E+ T
Sbjct: 172 EPGQSPIF----WYAPE-------SLSDNIFSRQSDVWSFGVVLYELFT 209

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 7/152 (4%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           ++  L+H  +V + A    ++ ++++ +Y+              P  + +  NK L +A+
Sbjct: 61  LMKQLQHQRLVRLYAVVT-QEPIYIITEYM---ENGSLVDFLKTPSGIKLTINKLLDMAA 116
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             A+G+AF+   N     H  L ++NI+V    +  I+D G+ +L               
Sbjct: 117 QIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDAEXTAREGAKFP 173
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           +K+      +   F  + DV+SFG++L EI+T
Sbjct: 174 IKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 11/151 (7%)
Query: 380 VIGGLRHSNIVSIR-AYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLA 438
           V+  LRHSN+V +       K  L++V +Y+               GR  +  +  LK +
Sbjct: 239 VMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSR---GRSVLGGDCLLKFS 295
Query: 439 SDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAP 498
            D  + + +L G N     H  L++ N++V +   A +SD G+ +   +     D    P
Sbjct: 296 LDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASS---TQDTGKLP 349
Query: 499 ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEI 529
            +K+       ++KF  + DV+SFG++L EI
Sbjct: 350 -VKWTAPEALREKKFSTKSDVWSFGILLWEI 379

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 11/151 (7%)
Query: 380 VIGGLRHSNIVSIR-AYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLA 438
           V+  LRHSN+V +       K  L++V +Y+               GR  +  +  LK +
Sbjct: 67  VMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSR---GRSVLGGDCLLKFS 123
Query: 439 SDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAP 498
            D  + + +L G N     H  L++ N++V +   A +SD G+ +   +     D    P
Sbjct: 124 LDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASS---TQDTGKLP 177
Query: 499 ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEI 529
            +K+       ++KF  + DV+SFG++L EI
Sbjct: 178 -VKWTAPEALREKKFSTKSDVWSFGILLWEI 207

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 11/151 (7%)
Query: 380 VIGGLRHSNIVSIR-AYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLA 438
           V+  LRHSN+V +       K  L++V +Y+               GR  +  +  LK +
Sbjct: 52  VMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSR---GRSVLGGDCLLKFS 108
Query: 439 SDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAP 498
            D  + + +L G N     H  L++ N++V +   A +SD G+ +   +     D    P
Sbjct: 109 LDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASS---TQDTGKLP 162
Query: 499 ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEI 529
            +K+       ++KF  + DV+SFG++L EI
Sbjct: 163 -VKWTAPEALREKKFSTKSDVWSFGILLWEI 192

>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Mgatp) Length = 271

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Query: 429 VDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP 488
           VD ++ +K A D A+G+AFLH        H  L+S ++++D+   A IS   V   F +P
Sbjct: 108 VDQSQAVKFALDMARGMAFLHTLEPLIPRHA-LNSRSVMIDEDMTARISMADVKFSFQSP 166
Query: 489 -FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD 538
                 A+ APE       + ++R      D++SF V+L E++T ++   D
Sbjct: 167 GRMYAPAWVAPEALQKKPEDTNRRS----ADMWSFAVLLWELVTREVPFAD 213

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 21/179 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           ++++  LRH N+V++   C  K   +LV++++                   +D+    K 
Sbjct: 75  IKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPNG-----LDYQVVQKY 129
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA--- 494
                 G+ F H +N   + H  +   NI+V Q G   + D G  +    P  + D    
Sbjct: 130 LFQIINGIGFCHSHN---IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVA 186
Query: 495 ---YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELGIVKWVQM 549
              Y APEL   +       K+ +  DV++ G ++ E+  G+ +  GD ++  +  + M
Sbjct: 187 TRWYRAPELLVGD------VKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMM 239

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 13/159 (8%)
Query: 378 LRVIGGLRHSNIVSIR--AYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           ++++  L    IV  R  +Y  G+  L LV +YLP               R  +D ++ L
Sbjct: 63  IQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRH----RARLDASRLL 118
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---FFIN 492
             +S   KG+ +L         H  L++ NI+V+   +  I+D G+ +L       + + 
Sbjct: 119 LYSSQICKGMEYL---GSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVR 175
Query: 493 DAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           +   +P + +    + S   F ++ DV+SFGVVL E+ T
Sbjct: 176 EPGQSP-IFWYAPESLSDNIFSRQSDVWSFGVVLYELFT 213

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 7/152 (4%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           ++  L+H  +V + A    ++ ++++ +Y+              P  + +  NK L +A+
Sbjct: 69  LMKQLQHQRLVRLYAVVT-QEPIYIITEYM---ENGSLVDFLKTPSGIKLTINKLLDMAA 124
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             A+G+AF+   N     H  L ++NI+V    +  I+D G+ +L               
Sbjct: 125 QIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFP 181
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           +K+      +   F  + DV+SFG++L EI+T
Sbjct: 182 IKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 213

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 13/159 (8%)
Query: 378 LRVIGGLRHSNIVSIR--AYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           ++++  L    IV  R  +Y  G+  L LV +YLP               R  +D ++ L
Sbjct: 62  IQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRH----RARLDASRLL 117
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---FFIN 492
             +S   KG+ +L         H  L++ NI+V+   +  I+D G+ +L       + + 
Sbjct: 118 LYSSQICKGMEYL---GSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVR 174
Query: 493 DAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           +   +P + +    + S   F ++ DV+SFGVVL E+ T
Sbjct: 175 EPGQSP-IFWYAPESLSDNIFSRQSDVWSFGVVLYELFT 212

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 7/152 (4%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           ++  L+H  +V + A    ++ ++++ +Y+              P  + +  NK L +A+
Sbjct: 62  LMKQLQHQRLVRLYAVVT-QEPIYIITEYM---ENGSLVDFLKTPSGIKLTINKLLDMAA 117
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             A+G+AF+   N     H  L ++NI+V    +  I+D G+ +L               
Sbjct: 118 QIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFP 174
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           +K+      +   F  + DV+SFG++L EI+T
Sbjct: 175 IKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 206

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 13/159 (8%)
Query: 378 LRVIGGLRHSNIVSIR--AYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRL 435
           ++++  L    IV  R  +Y  G+  L LV +YLP               R  +D ++ L
Sbjct: 75  IQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRH----RARLDASRLL 130
Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---FFIN 492
             +S   KG+ +L         H  L++ NI+V+   +  I+D G+ +L       + + 
Sbjct: 131 LYSSQICKGMEYL---GSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVR 187
Query: 493 DAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           +   +P + +    + S   F ++ DV+SFGVVL E+ T
Sbjct: 188 EPGQSP-IFWYAPESLSDNIFSRQSDVWSFGVVLYELFT 225

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 7/152 (4%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           ++  L+H  +V + A    ++ ++++ +Y+              P  + +  NK L +A+
Sbjct: 67  LMKQLQHQRLVRLYAVVT-QEPIYIITEYM---ENGSLVDFLKTPSGIKLTINKLLDMAA 122
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             A+G+AF+   N     H  L ++NI+V    +  I+D G+ +L               
Sbjct: 123 QIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFP 179
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           +K+      +   F  + DV+SFG++L EI+T
Sbjct: 180 IKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 211

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           ++  L+H  +V + A    ++ ++++ +Y+              P  + +  NK L +A+
Sbjct: 63  LMKQLQHQRLVRLYAVVT-QEPIYIITEYM---ENGSLVDFLKTPSGIKLTINKLLDMAA 118
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             A+G+AF+   N     H  L ++NI+V    +  I+D G+ +L       ++   A E
Sbjct: 119 QIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIE-----DNEXTARE 170
Query: 500 -----LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
                +K+      +   F  + DV+SFG++L EI+T
Sbjct: 171 GAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 207

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 7/152 (4%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           ++  L+H  +V + A    ++ ++++ +Y+              P  + +  NK L +A+
Sbjct: 61  LMKQLQHQRLVRLYAVVT-QEPIYIITEYM---ENGSLVDFLKTPSGIKLTINKLLDMAA 116
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             A+G+AF+   N     H  L ++NI+V    +  I+D G+ +L               
Sbjct: 117 QIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFP 173
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           +K+      +   F  + DV+SFG++L EI+T
Sbjct: 174 IKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           ++  L+H  +V + A    ++ ++++ +Y+              P  + +  NK L +A+
Sbjct: 70  LMKQLQHQRLVRLYAVVT-QEPIYIITEYM---ENGSLVDFLKTPSGIKLTINKLLDMAA 125
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             A+G+AF+   N     H  L ++NI+V    +  I+D G+ +L       ++   A E
Sbjct: 126 QIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIE-----DNEXTARE 177
Query: 500 -----LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
                +K+      +   F  + DV+SFG++L EI+T
Sbjct: 178 GAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 214

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 7/152 (4%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           ++  L+H  +V + A    ++ ++++ +Y+              P  + +  NK L +A+
Sbjct: 61  LMKQLQHQRLVRLYAVVT-QEPIYIITEYM---ENGSLVDFLKTPSGIKLTINKLLDMAA 116
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             A+G+AF+   N     H  L ++NI+V    +  I+D G+ +L               
Sbjct: 117 QIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFP 173
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           +K+      +   F  + DV+SFG++L EI+T
Sbjct: 174 IKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone Morp Protein Receptor Type-1b (Bmpr1b) In Complex With Fkbp12 An 193189 Length = 337

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 36/170 (21%)
Query: 384 LRHSNIVS-IRAYCNGK---DELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           +RH NI+  I A   G     +L+L+ DY                    +D    LKLA 
Sbjct: 88  MRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKSTT------LDAKSMLKLAY 141
Query: 440 DSAKGLAFLHG-----YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA 494
            S  GL  LH        K  + H  L S NI+V + G  CI+D+G+        FI+D 
Sbjct: 142 SSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL-----AVKFISDT 196
Query: 495 ---------------YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEI 529
                          Y  PE+  + + N +  + +   D+YSFG++L E+
Sbjct: 197 NEVDIPPNTRVGTKRYMPPEV-LDESLNRNHFQSYIMADMYSFGLILWEV 245

>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine Length = 424

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 106/257 (41%), Gaps = 28/257 (10%)
Query: 309 RDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKXXXXXXXXXXXXXXXXX 368
           +DG  V  +V   G  +G     ++  +  +++G G  G  Y+                 
Sbjct: 36  KDGSKVTTVVATPG--QGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ 93
Query: 369 XXXXXXDEWLRVIGGLRHSNIVSIRA--YCNG--KDELFL--VYDYLPXXXXXXXXXXXX 422
                  E L+++  L H NIV +R   Y +G  KDE++L  V DY+P            
Sbjct: 94  DKRFKNRE-LQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSR 152
Query: 423 XPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIG- 480
               +PV + K         + LA++H +    + H  +   N+++D       + D G 
Sbjct: 153 AKQTLPVIYVKLYMY--QLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGS 207
Query: 481 VHQLF----HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MA 535
             QL     +  +  +  Y APEL F   +      +    DV+S G VL E+L G+ + 
Sbjct: 208 AKQLVRGEPNVSYICSRYYRAPELIFGATD------YTSSIDVWSAGCVLAELLLGQPIF 261
Query: 536 KGD-GELGIVKWVQMMG 551
            GD G   +V+ ++++G
Sbjct: 262 PGDSGVDQLVEIIKVLG 278

>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In Complexed With Inhibitor Length = 414

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 106/257 (41%), Gaps = 28/257 (10%)
Query: 309 RDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKXXXXXXXXXXXXXXXXX 368
           +DG  V  +V   G  +G     ++  +  +++G G  G  Y+                 
Sbjct: 26  KDGSKVTTVVATPG--QGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ 83
Query: 369 XXXXXXDEWLRVIGGLRHSNIVSIRA--YCNG--KDELFL--VYDYLPXXXXXXXXXXXX 422
                  E L+++  L H NIV +R   Y +G  KDE++L  V DY+P            
Sbjct: 84  DKRFKNRE-LQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSR 142
Query: 423 XPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIG- 480
               +PV + K         + LA++H +    + H  +   N+++D       + D G 
Sbjct: 143 AKQTLPVIYVKLYMY--QLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGS 197
Query: 481 VHQLF----HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MA 535
             QL     +  +  +  Y APEL F   +      +    DV+S G VL E+L G+ + 
Sbjct: 198 AKQLVRGEPNVSYICSRYYRAPELIFGATD------YTSSIDVWSAGCVLAELLLGQPIF 251
Query: 536 KGD-GELGIVKWVQMMG 551
            GD G   +V+ ++++G
Sbjct: 252 PGDSGVDQLVEIIKVLG 268

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 60  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 119
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 120 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV 172
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 173 TLWYRAPEILLGX------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 226
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 227 LGTPDEVVW 235

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 54  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLSMDLKKFMDASALTGIPLPLIKSYLFQL 113
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 114 ----LQGLAFCHSHR---VLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 166
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 167 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 220
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 221 LGTPDEVVW 229

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 56  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLSMDLKKFMDASALTGIPLPLIKSYLFQL 115
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 116 ----LQGLAFCHSHR---VLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 168
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 169 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 222
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 223 LGTPDEVVW 231

>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Length = 420

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 106/257 (41%), Gaps = 28/257 (10%)
Query: 309 RDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKXXXXXXXXXXXXXXXXX 368
           +DG  V  +V   G  +G     ++  +  +++G G  G  Y+                 
Sbjct: 32  KDGSKVTTVVATPG--QGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ 89
Query: 369 XXXXXXDEWLRVIGGLRHSNIVSIRA--YCNG--KDELFL--VYDYLPXXXXXXXXXXXX 422
                  E L+++  L H NIV +R   Y +G  KDE++L  V DY+P            
Sbjct: 90  DKRFKNRE-LQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSR 148
Query: 423 XPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIG- 480
               +PV + K         + LA++H +    + H  +   N+++D       + D G 
Sbjct: 149 AKQTLPVIYVKLYMY--QLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGS 203
Query: 481 VHQLF----HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MA 535
             QL     +  +  +  Y APEL F   +      +    DV+S G VL E+L G+ + 
Sbjct: 204 AKQLVRGEPNVSYICSRYYRAPELIFGATD------YTSSIDVWSAGCVLAELLLGQPIF 257
Query: 536 KGD-GELGIVKWVQMMG 551
            GD G   +V+ ++++G
Sbjct: 258 PGDSGVDQLVEIIKVLG 274

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 53  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 112
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 113 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV 165
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 166 TLWYRAPEILLGX------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 219
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 220 LGTPDEVVW 228

>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp Length = 422

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 106/257 (41%), Gaps = 28/257 (10%)
Query: 309 RDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKXXXXXXXXXXXXXXXXX 368
           +DG  V  +V   G  +G     ++  +  +++G G  G  Y+                 
Sbjct: 34  KDGSKVTTVVATPG--QGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ 91
Query: 369 XXXXXXDEWLRVIGGLRHSNIVSIRA--YCNG--KDELFL--VYDYLPXXXXXXXXXXXX 422
                  E L+++  L H NIV +R   Y +G  KDE++L  V DY+P            
Sbjct: 92  DKRFKNRE-LQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSR 150
Query: 423 XPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIG- 480
               +PV + K         + LA++H +    + H  +   N+++D       + D G 
Sbjct: 151 AKQTLPVIYVKLYMY--QLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGS 205
Query: 481 VHQLF----HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MA 535
             QL     +  +  +  Y APEL F   +      +    DV+S G VL E+L G+ + 
Sbjct: 206 AKQLVRGEPNVSYICSRYYRAPELIFGATD------YTSSIDVWSAGCVLAELLLGQPIF 259
Query: 536 KGD-GELGIVKWVQMMG 551
            GD G   +V+ ++++G
Sbjct: 260 PGDSGVDQLVEIIKVLG 276

>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor Length = 465

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 106/257 (41%), Gaps = 28/257 (10%)
Query: 309 RDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKXXXXXXXXXXXXXXXXX 368
           +DG  V  +V   G  +G     ++  +  +++G G  G  Y+                 
Sbjct: 77  KDGSKVTTVVATPG--QGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ 134
Query: 369 XXXXXXDEWLRVIGGLRHSNIVSIRA--YCNG--KDELFL--VYDYLPXXXXXXXXXXXX 422
                  E L+++  L H NIV +R   Y +G  KDE++L  V DY+P            
Sbjct: 135 DKRFKNRE-LQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSR 193
Query: 423 XPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIG- 480
               +PV + K         + LA++H +    + H  +   N+++D       + D G 
Sbjct: 194 AKQTLPVIYVKLYMY--QLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGS 248
Query: 481 VHQLF----HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MA 535
             QL     +  +  +  Y APEL F   +      +    DV+S G VL E+L G+ + 
Sbjct: 249 AKQLVRGEPNVSYICSRYYRAPELIFGATD------YTSSIDVWSAGCVLAELLLGQPIF 302
Query: 536 KGD-GELGIVKWVQMMG 551
            GD G   +V+ ++++G
Sbjct: 303 PGDSGVDQLVEIIKVLG 319

>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Benzoimidazol Inhibitor Length = 372

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 106/257 (41%), Gaps = 28/257 (10%)
Query: 309 RDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKXXXXXXXXXXXXXXXXX 368
           +DG  V  +V   G  +G     ++  +  +++G G  G  Y+                 
Sbjct: 11  KDGSKVTTVVATPG--QGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ 68
Query: 369 XXXXXXDEWLRVIGGLRHSNIVSIRA--YCNG--KDELFL--VYDYLPXXXXXXXXXXXX 422
                  E L+++  L H NIV +R   Y +G  KDE++L  V DY+P            
Sbjct: 69  DKRFKNRE-LQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSR 127
Query: 423 XPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIG- 480
               +PV + K         + LA++H +    + H  +   N+++D       + D G 
Sbjct: 128 AKQTLPVIYVKLY--MYQLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGS 182
Query: 481 VHQLF----HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MA 535
             QL     +  +  +  Y APEL F   +      +    DV+S G VL E+L G+ + 
Sbjct: 183 AKQLVRGEPNVSYICSRYYRAPELIFGATD------YTSSIDVWSAGCVLAELLLGQPIF 236
Query: 536 KGD-GELGIVKWVQMMG 551
            GD G   +V+ ++++G
Sbjct: 237 PGDSGVDQLVEIIKVLG 253

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 56  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLSMDLKDFMDASALTGIPLPLIKSYLFQL 115
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 116 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 168
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 169 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 222
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 223 LGTPDEVVW 231

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 26/166 (15%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+   RH NI+    Y   K +L +V  +                  M     K + +A 
Sbjct: 73  VLRKTRHVNILLFMGYST-KPQLAIVTQWCEGSSLYHHLHASETKFEM----KKLIDIAR 127
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV----------HQLFHTPF 489
            +A+G+ +LH  +   + H  L S+NI + +     I D G+          HQ      
Sbjct: 128 QTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSG 184
Query: 490 FINDAYNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM 534
            I   + APE ++  ++N YS +      DVY+FG+VL E++TG++
Sbjct: 185 SI--LWMAPEVIRMQDSNPYSFQ-----SDVYAFGIVLYELMTGQL 223

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 56  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKTFMDASALTGIPLPLIKSYLFQL 115
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 116 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 168
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 169 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 222
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 223 LGTPDEVVW 231

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 55  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLSMDLKDFMDASALTGIPLPLIKSYLFQL 114
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 115 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 167
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 168 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 221
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 222 LGTPDEVVW 230

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 16/165 (9%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+  ++H N+V +   C  +   +++ +++                R  V+    L +A+
Sbjct: 64  VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC---NRQEVNAVVLLYMAT 120
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             +  + +L    K +  H  L++ N +V +     ++D G+ +L        D Y AP 
Sbjct: 121 QISSAMEYL---EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLM-----TGDTYTAPA 172
Query: 500 -----LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG 539
                +K+    + +  KF  + DV++FGV+L EI T  M+   G
Sbjct: 173 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG 217

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 16/165 (9%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+  ++H N+V +   C  +   +++ +++                R  V+    L +A+
Sbjct: 63  VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC---NRQEVNAVVLLYMAT 119
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             +  + +L    K +  H  L++ N +V +     ++D G+ +L        D Y AP 
Sbjct: 120 QISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLM-----TGDTYTAPA 171
Query: 500 -----LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG 539
                +K+    + +  KF  + DV++FGV+L EI T  M+   G
Sbjct: 172 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG 216

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 57  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 116
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 117 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV 169
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELG-IVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 170 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 223
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 224 LGTPDEVVW 232

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 54  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 113
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 114 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV 166
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 167 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 220
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 221 LGTPDEVVW 229

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 26/166 (15%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+   RH NI+    Y   K +L +V  +                  M     K + +A 
Sbjct: 61  VLRKTRHVNILLFMGYST-KPQLAIVTQWCEGSSLYHHLHASETKFEM----KKLIDIAR 115
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV----------HQLFHTPF 489
            +A+G+ +LH  +   + H  L S+NI + +     I D G+          HQ      
Sbjct: 116 QTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLSG 172
Query: 490 FINDAYNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM 534
            I   + APE ++  ++N YS +      DVY+FG+VL E++TG++
Sbjct: 173 SI--LWMAPEVIRMQDSNPYSFQ-----SDVYAFGIVLYELMTGQL 211

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+  ++H N+V +   C  +   ++V +Y+P               R  V     L +A+
Sbjct: 81  VMKEIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNLLDYLREC---NREEVTAVVLLYMAT 137
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             +  + +L    K +  H  L++ N +V +     ++D G+ +L     +   A     
Sbjct: 138 QISSAMEYL---EKKNFIHRDLAARNCLVGENHVVKVADFGLSRLMTGDTYTAHAGAKFP 194
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG 539
           +K+    + +   F  + DV++FGV+L EI T  M+   G
Sbjct: 195 IKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPG 234

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 53  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 112
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 113 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 165
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 166 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 219
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 220 LGTPDEVVW 228

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 56  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 115
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 116 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 168
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 169 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 222
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 223 LGTPDEVVW 231

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 55  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 114
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 115 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 167
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 168 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 221
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 222 LGTPDEVVW 230

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 56  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 115
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 116 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 168
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 169 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 222
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 223 LGTPDEVVW 231

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 107/240 (44%), Gaps = 21/240 (8%)
Query: 375 DEWLR---VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDW 431
           +E+L+   V+  ++H N+V +   C  +   +++ +++                R  V+ 
Sbjct: 300 EEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC---NRQEVNA 356
Query: 432 NKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFI 491
              L +A+  +  + +L    K +  H +L++ N +V +     ++D G+ +L     + 
Sbjct: 357 VVLLYMATQISSAMEYL---EKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYT 413
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMG 551
             A     +K+    + +  KF  + DV++FGV+L EI T  M+   G + + +  +++ 
Sbjct: 414 AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG-IDLSQVYELLE 472
Query: 552 QDESAWEVFDFELIMDKEMEEEMRXXXXXXXXXXXXXPKDRPNMSIVHRMIEDIRTKGSI 611
           +D   + +   E   +K + E MR             P DRP+ + +H+  E +  + SI
Sbjct: 473 KD---YRMERPEGCPEK-VYELMR-------ACWQWNPSDRPSFAEIHQAFETMFQESSI 521

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 55  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 114
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 115 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 167
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 168 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 221
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 222 LGTPDEVVW 230

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 54  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 113
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 114 ----LQGLAFCHSHR---VLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 166
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 167 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 220
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 221 LGTPDEVVW 229

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 53  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 112
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 113 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 165
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 166 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 219
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 220 LGTPDEVVW 228

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 52  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 111
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 112 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 164
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 165 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 218
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 219 LGTPDEVVW 227

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 53  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 112
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 113 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV 165
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 166 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 219
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 220 LGTPDEVVW 228

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 52  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 111
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 112 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV 164
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 165 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 218
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 219 LGTPDEVVW 227

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 60  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 119
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 120 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV 172
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 173 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 226
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 227 LGTPDEVVW 235

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 57  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 116
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 117 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 169
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 170 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 223
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 224 LGTPDEVVW 232

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 53  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 112
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 113 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 165
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 166 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 219
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 220 LGTPDEVVW 228

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 55  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 114
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 115 ----LQGLAFCHSHR---VLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 167
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 168 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 221
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 222 LGTPDEVVW 230

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 53  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 112
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 113 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV 165
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 166 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 219
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 220 LGTPDEVVW 228

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 52  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 111
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 112 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV 164
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 165 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 218
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 219 LGTPDEVVW 227

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 53  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 112
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 113 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 165
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 166 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 219
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 220 LGTPDEVVW 228

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 12/161 (7%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPX------XXXXXXXXXXXXPGRMPVDW-- 431
           ++  L+H +IV     C   D L +V++Y+                     G  P +   
Sbjct: 68  LLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQ 127
Query: 432 NKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ-LFHTPFF 490
           ++ L +A   A G+ +L      H  H  L++ N +V +     I D G+ + ++ T ++
Sbjct: 128 SQMLHIAQQIAAGMVYL---ASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYY 184
Query: 491 INDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
               +    +++    +   RKF    DV+S GVVL EI T
Sbjct: 185 RVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFT 225

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 52  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 111
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 112 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 164
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 165 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 218
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 219 LGTPDEVVW 227

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 54  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 113
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 114 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 166
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 167 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 220
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 221 LGTPDEVVW 229

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 53  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 112
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 113 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV 165
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 166 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 219
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 220 LGTPDEVVW 228

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 52  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 111
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 112 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV 164
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 165 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 218
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 219 LGTPDEVVW 227

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 54  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 113
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 114 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 166
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 167 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 220
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 221 LGTPDEVVW 229

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 87/196 (44%), Gaps = 28/196 (14%)
Query: 424 PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ 483
           PG  P+   ++L +A   A G+A+L   ++    H  L++ N +V +     I+D G+ +
Sbjct: 166 PGPPPLSCAEQLCIARQVAAGMAYL---SERKFVHRDLATRNCLVGENMVVKIADFGLSR 222
Query: 484 -LFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG 542
            ++   ++  D  +A  +++    +    ++    DV+++GVVL EI +  +    G   
Sbjct: 223 NIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYG--- 279
Query: 543 IVKWVQMMGQDESAWEVFDFELIM-----DKEMEEEMRXXXXXXXXXXXXXPKDRPNMSI 597
                  M  +E  + V D  ++        E+   MR             P DRP+   
Sbjct: 280 -------MAHEEVIYYVRDGNILACPENCPLELYNLMR-------LCWSKLPADRPSFCS 325
Query: 598 VHRMIEDI--RTKGSI 611
           +HR+++ +  R +G++
Sbjct: 326 IHRILQRMCERAEGTV 341

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 21/116 (18%)
Query: 430 DWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-------- 481
           +  K + +A  +A+G+ +LH  +   + H  L S+NI + +     I D G+        
Sbjct: 118 EMKKLIDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWS 174
Query: 482 --HQLFHTPFFINDAYNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM 534
             HQ       I   + APE ++  ++N YS +      DVY+FG+VL E++TG++
Sbjct: 175 GSHQFEQLSGSI--LWMAPEVIRMQDSNPYSFQ-----SDVYAFGIVLYELMTGQL 223

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 53  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKDFMDASALTGIPLPLIKSYLFQL 112
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 113 ----LQGLAFCHSHR---VLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 165
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELG-IVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 166 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 219
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 220 LGTPDEVVW 228

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/232 (20%), Positives = 101/232 (43%), Gaps = 18/232 (7%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+  ++H N+V +   C  +   +++ +++                R  V     L +A+
Sbjct: 269 VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC---NRQEVSAVVLLYMAT 325
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             +  + +L    K +  H +L++ N +V +     ++D G+ +L     +   A     
Sbjct: 326 QISSAMEYL---EKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFP 382
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEV 559
           +K+    + +  KF  + DV++FGV+L EI T  M+   G + + +  +++ +D   + +
Sbjct: 383 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG-IDLSQVYELLEKD---YRM 438
Query: 560 FDFELIMDKEMEEEMRXXXXXXXXXXXXXPKDRPNMSIVHRMIEDIRTKGSI 611
              E   +K + E MR             P DRP+ + +H+  E +  + SI
Sbjct: 439 ERPEGCPEK-VYELMR-------ACWQWNPSDRPSFAEIHQAFETMFQESSI 482

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/238 (19%), Positives = 96/238 (40%), Gaps = 30/238 (12%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+  ++H N+V +   C  +   +++ +++                R  V     L +A+
Sbjct: 60  VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC---NRQEVSAVVLLYMAT 116
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             +  + +L    K +  H  L++ N +V +     ++D G+ +L     F   A     
Sbjct: 117 QISSAMEYL---EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTFTAHAGAKFP 173
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEV 559
           +K+    + +  KF  + DV++FGV+L EI T  M+   G                 +E+
Sbjct: 174 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG-----------IDPSQVYEL 222
Query: 560 FDFELIMDK------EMEEEMRXXXXXXXXXXXXXPKDRPNMSIVHRMIEDIRTKGSI 611
            + +  M++      ++ E MR             P DRP+ + +H+  E +  + SI
Sbjct: 223 LEKDYRMERPEGCPEKVYELMR-------ACWQWNPSDRPSFAEIHQAFETMFQESSI 273

>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Apo) Length = 271

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 429 VDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP 488
           VD ++ +K A D A+G AFLH        H  L+S ++ +D+   A IS   V   F +P
Sbjct: 108 VDQSQAVKFALDXARGXAFLHTLEPLIPRHA-LNSRSVXIDEDXTARISXADVKFSFQSP 166
Query: 489 -FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD 538
                 A+ APE       + ++R      D +SF V+L E++T ++   D
Sbjct: 167 GRXYAPAWVAPEALQKKPEDTNRRS----ADXWSFAVLLWELVTREVPFAD 213

>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta (Gsk3b) In Complex With Inhibitor 142 Length = 430

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 28/257 (10%)
Query: 309 RDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKXXXXXXXXXXXXXXXXX 368
           +DG  V  +V   G  +G     ++  +  +++G G  G  Y+                 
Sbjct: 32  KDGSKVTTVVATPG--QGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ 89
Query: 369 XXXXXXDEWLRVIGGLRHSNIVSIRA--YCNG--KDELFL--VYDYLPXXXXXXXXXXXX 422
                  E L+++  L H NIV +R   Y +G  KDE++L  V DY+P            
Sbjct: 90  DKRFKNRE-LQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSR 148
Query: 423 XPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIG- 480
               +PV + K         + LA++H +    + H  +   N+++D       + D G 
Sbjct: 149 AKQTLPVIYVKLYMY--QLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGS 203
Query: 481 VHQLF----HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MA 535
             QL     +     +  Y APEL F   +      +    DV+S G VL E+L G+ + 
Sbjct: 204 AKQLVRGEPNVSXICSRYYRAPELIFGATD------YTSSIDVWSAGCVLAELLLGQPIF 257
Query: 536 KGD-GELGIVKWVQMMG 551
            GD G   +V+ ++++G
Sbjct: 258 PGDSGVDQLVEIIKVLG 274

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 11/151 (7%)
Query: 380 VIGGLRHSNIVSIR-AYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLA 438
           V+  LRHSN+V +       K  L++V +Y+               GR  +  +  LK +
Sbjct: 58  VMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSR---GRSVLGGDCLLKFS 114
Query: 439 SDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAP 498
            D  + + +L G N     H  L++ N++V +   A +SD G+ +   +     D    P
Sbjct: 115 LDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASS---TQDTGKLP 168
Query: 499 ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEI 529
            +K+       +  F  + DV+SFG++L EI
Sbjct: 169 -VKWTAPEALREAAFSTKSDVWSFGILLWEI 198

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV+++L                 +P+  +   +L
Sbjct: 53  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 112
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GL+F H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 113 ----LQGLSFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV 165
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 166 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 219
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 220 LGTPDEVVW 228

>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With 3-Indolyl-4- Arylmaleimide Inhibitor Length = 391

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 25/188 (13%)
Query: 378 LRVIGGLRHSNIVSIRA--YCNG--KDELFL--VYDYLPXXXXXXXXXXXXXPGRMPVDW 431
           L+++  L H NIV +R   Y +G  KDE++L  V DY+P                +PV +
Sbjct: 69  LQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIY 128
Query: 432 NKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIG-VHQLF---- 485
            K         + LA++H +    + H  +   N+++D       + D G   QL     
Sbjct: 129 VKLYMY--QLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEP 183
Query: 486 HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGD-GELGI 543
           +  +  +  Y APEL F   +      +    DV+S G VL E+L G+ +  GD G   +
Sbjct: 184 NVSYICSRYYRAPELIFGATD------YTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQL 237
Query: 544 VKWVQMMG 551
           V+ ++++G
Sbjct: 238 VEIIKVLG 245

>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With Frattide Peptide Length = 378

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 28/257 (10%)
Query: 309 RDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKXXXXXXXXXXXXXXXXX 368
           +DG  V  +V   G  +G     ++  +  +++G G  G  Y+                 
Sbjct: 17  KDGSKVTTVVATPG--QGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ 74
Query: 369 XXXXXXDEWLRVIGGLRHSNIVSIRA--YCNG--KDELFL--VYDYLPXXXXXXXXXXXX 422
                  E L+++  L H NIV +R   Y +G  KDE++L  V DY+P            
Sbjct: 75  DKRFKNRE-LQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSR 133
Query: 423 XPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIG- 480
               +PV + K         + LA++H +    + H  +   N+++D       + D G 
Sbjct: 134 AKQTLPVIYVKLY--MYQLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGS 188
Query: 481 VHQLF----HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MA 535
             QL     +     +  Y APEL F   +      +    DV+S G VL E+L G+ + 
Sbjct: 189 AKQLVRGEPNVSXICSRYYRAPELIFGATD------YTSSIDVWSAGCVLAELLLGQPIF 242
Query: 536 KGD-GELGIVKWVQMMG 551
            GD G   +V+ ++++G
Sbjct: 243 PGDSGVDQLVEIIKVLG 259

>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective Gsk-3 Inhibitors Length = 367

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 28/257 (10%)
Query: 309 RDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKXXXXXXXXXXXXXXXXX 368
           +DG  V  +V   G  +G     ++  +  +++G G  G  Y+                 
Sbjct: 6   KDGSKVTTVVATPG--QGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ 63
Query: 369 XXXXXXDEWLRVIGGLRHSNIVSIRA--YCNG--KDELFL--VYDYLPXXXXXXXXXXXX 422
                  E L+++  L H NIV +R   Y +G  KDE++L  V DY+P            
Sbjct: 64  DKRFKNRE-LQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSR 122
Query: 423 XPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIG- 480
               +PV + K         + LA++H +    + H  +   N+++D       + D G 
Sbjct: 123 AKQTLPVIYVKLY--MYQLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGS 177
Query: 481 VHQLF----HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MA 535
             QL     +     +  Y APEL F   +      +    DV+S G VL E+L G+ + 
Sbjct: 178 AKQLVRGEPNVSXICSRYYRAPELIFGATD------YTSSIDVWSAGCVLAELLLGQPIF 231
Query: 536 KGD-GELGIVKWVQMMG 551
            GD G   +V+ ++++G
Sbjct: 232 PGDSGVDQLVEIIKVLG 248

>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2- Aminopyridine Inhibitor Length = 301

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 435 LKLASDSAKGLAFLH-----GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---- 485
           L++    A GLA LH        K  + H  L S NI+V + G  CI+D+G+  +     
Sbjct: 108 LRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQST 167
Query: 486 ------HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG 539
                 + P      Y APE+  +          ++R D+++FG+VL E+    ++ G  
Sbjct: 168 NQLDVGNNPRVGTKRYMAPEV-LDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIV 226
Query: 540 E 540
           E
Sbjct: 227 E 227

>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Imidazopyridine Inhibitor Length = 382

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 28/257 (10%)
Query: 309 RDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKXXXXXXXXXXXXXXXXX 368
           +DG  V  +V   G  +G     ++  +  +++G G  G  Y+                 
Sbjct: 10  KDGSKVTTVVATPG--QGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ 67
Query: 369 XXXXXXDEWLRVIGGLRHSNIVSIRA--YCNG--KDELFL--VYDYLPXXXXXXXXXXXX 422
                  E L+++  L H NIV +R   Y +G  KDE++L  V DY+P            
Sbjct: 68  DKRFKNRE-LQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSR 126
Query: 423 XPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIG- 480
               +PV + K         + LA++H +    + H  +   N+++D       + D G 
Sbjct: 127 AKQTLPVIYVKLYMY--QLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGS 181
Query: 481 VHQLF----HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MA 535
             QL     +     +  Y APEL F   +      +    DV+S G VL E+L G+ + 
Sbjct: 182 AKQLVRGEPNVSXICSRYYRAPELIFGATD------YTSSIDVWSAGCVLAELLLGQPIF 235
Query: 536 KGD-GELGIVKWVQMMG 551
            GD G   +V+ ++++G
Sbjct: 236 PGDSGVDQLVEIIKVLG 252

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 83/189 (43%), Gaps = 18/189 (9%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L+H NIV +    + +++L LV++++                   ++ N     
Sbjct: 54  ISLMKELKHENIVRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYF 113
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H   +  + H  L   N+++++ G   + D G+ + F  P        +
Sbjct: 114 QWQLLQGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVV 170
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELGIVKWV-QM 549
              Y AP++   +      R +    D++S G +L E++TGK +  G  +   +K +  +
Sbjct: 171 TLWYRAPDVLMGS------RTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDI 224
Query: 550 MGQ-DESAW 557
           MG  +ES W
Sbjct: 225 MGTPNESLW 233

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV++++                 +P+  +   +L
Sbjct: 56  ISLLKELNHPNIVKLLDVIHTENKLYLVFEHVDQDLKKFMDASALTGIPLPLIKSYLFQL 115
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 116 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV 168
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELG-IVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 169 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 222
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 223 LGTPDEVVW 231

>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-3beta Inhibitors Length = 371

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 28/257 (10%)
Query: 309 RDGGDVEEMVMFEGCNKGFRNVGDLLKSSAELLGKGCVGATYKXXXXXXXXXXXXXXXXX 368
           +DG  V  +V   G  +G     ++  +  +++G G  G  Y+                 
Sbjct: 10  KDGSKVTTVVATPG--QGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ 67
Query: 369 XXXXXXDEWLRVIGGLRHSNIVSIRA--YCNG--KDELFL--VYDYLPXXXXXXXXXXXX 422
                  E L+++  L H NIV +R   Y +G  KDE++L  V DY+P            
Sbjct: 68  DKRFKNRE-LQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSR 126
Query: 423 XPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIG- 480
               +PV + K         + LA++H +    + H  +   N+++D       + D G 
Sbjct: 127 AKQTLPVIYVKLYMY--QLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGS 181
Query: 481 VHQLF----HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MA 535
             QL     +     +  Y APEL F   +      +    DV+S G VL E+L G+ + 
Sbjct: 182 AKQLVRGEPNVSXICSRYYRAPELIFGATD------YTSSIDVWSAGCVLAELLLGQPIF 235
Query: 536 KGD-GELGIVKWVQMMG 551
            GD G   +V+ ++++G
Sbjct: 236 PGDSGVDQLVEIIKVLG 252

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKL 437
           + ++  L H NIV +    + +++L+LV++++                 +P+  +   +L
Sbjct: 52  ISLLKELNHPNIVKLLDVIHTENKLYLVFEHVHQDLKTFMDASALTGIPLPLIKSYLFQL 111
Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------FI 491
                +GLAF H +    + H  L   N++++  G   ++D G+ + F  P        +
Sbjct: 112 ----LQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV 164
Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL-GIVKWVQM 549
              Y APE+          + +    D++S G +  E++T + +  GD E+  + +  + 
Sbjct: 165 TLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 218
Query: 550 MGQ-DESAW 557
           +G  DE  W
Sbjct: 219 LGTPDEVVW 227

>pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 330

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 435 LKLASDSAKGLAFLH-----GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---- 485
           L++    A GLA LH        K  + H  L S NI+V + G  CI+D+G+  +     
Sbjct: 137 LRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQST 196
Query: 486 ------HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG 539
                 + P      Y APE+  +          ++R D+++FG+VL E+    ++ G  
Sbjct: 197 NQLDVGNNPRVGTKRYMAPEV-LDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIV 255
Query: 540 E 540
           E
Sbjct: 256 E 256

>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor That Attenuates Hyperactivity In Clock Mutant Mice Length = 350

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 25/188 (13%)
Query: 378 LRVIGGLRHSNIVSIRA--YCNG--KDELFL--VYDYLPXXXXXXXXXXXXXPGRMPVDW 431
           L+++  L H NIV +R   Y +G  KDE++L  V DY+P                +PV +
Sbjct: 64  LQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIY 123
Query: 432 NKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIG-VHQLF---- 485
            K         + LA++H +    + H  +   N+++D       + D G   QL     
Sbjct: 124 VKLY--MYQLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEP 178
Query: 486 HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGD-GELGI 543
           +  +  +  Y APEL F   +      +    DV+S G VL E+L G+ +  GD G   +
Sbjct: 179 NVSYICSRYYRAPELIFGATD------YTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQL 232
Query: 544 VKWVQMMG 551
           V+ ++++G
Sbjct: 233 VEIIKVLG 240

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/239 (20%), Positives = 100/239 (41%), Gaps = 32/239 (13%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+  ++H N+V +   C  +   +++ +++                R  V+    L +A+
Sbjct: 67  VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC---NRQEVNAVVLLYMAT 123
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             +  + +L    K +  H  L++ N +V +     ++D G+ +L     +   A     
Sbjct: 124 QISSAMEYL---EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFP 180
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG-ELGIVKWVQMMGQDESAWE 558
           +K+    + +  KF  + DV++FGV+L EI T  M+   G +L  V            +E
Sbjct: 181 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQV------------YE 228
Query: 559 VFDFELIMDK------EMEEEMRXXXXXXXXXXXXXPKDRPNMSIVHRMIEDIRTKGSI 611
           + + +  M++      ++ E MR             P DRP+ + +H+  E +  + SI
Sbjct: 229 LLEKDYRMERPEGCPEKVYELMR-------ACWQWNPSDRPSFAEIHQAFETMFQESSI 280

>pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex With The Imidazo[1,2-B]pyridazine Inhibitor K00135 Length = 301

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 435 LKLASDSAKGLAFLH-----GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---- 485
           L++    A GLA LH        K  + H  L S NI+V + G  CI+D+G+  +     
Sbjct: 108 LRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQST 167
Query: 486 ------HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG 539
                 + P      Y APE+  +          ++R D+++FG+VL E+    ++ G  
Sbjct: 168 NQLDVGNNPRVGTKRYMAPEV-LDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIV 226
Query: 540 E 540
           E
Sbjct: 227 E 227

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 70/160 (43%), Gaps = 6/160 (3%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+  ++H N+V +   C  +   +++ +++                R  V+    L +A+
Sbjct: 67  VMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLREC---NRQEVNAVVLLYMAT 123
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             +  + +L    K +  H  L++ N +V +     ++D G+ +L     +   A     
Sbjct: 124 QISSAMEYL---EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFP 180
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG 539
           +K+    + +  KF  + DV++FGV+L EI T  M+   G
Sbjct: 181 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG 220

>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With 6-Bromoindirubin-3'-Oxime Length = 350

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 25/188 (13%)
Query: 378 LRVIGGLRHSNIVSIRA--YCNG--KDELFL--VYDYLPXXXXXXXXXXXXXPGRMPVDW 431
           L+++  L H NIV +R   Y +G  KDE++L  V DY+P                +PV +
Sbjct: 64  LQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIY 123
Query: 432 NKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIG-VHQLF---- 485
            K         + LA++H +    + H  +   N+++D       + D G   QL     
Sbjct: 124 VKLY--MYQLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEP 178
Query: 486 HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGD-GELGI 543
           +  +  +  Y APEL F   +      +    DV+S G VL E+L G+ +  GD G   +
Sbjct: 179 NVSYICSRYYRAPELIFGATD------YTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQL 232
Query: 544 VKWVQMMG 551
           V+ ++++G
Sbjct: 233 VEIIKVLG 240

>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta. Length = 352

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 25/188 (13%)
Query: 378 LRVIGGLRHSNIVSIRA--YCNG--KDELFL--VYDYLPXXXXXXXXXXXXXPGRMPVDW 431
           L+++  L H NIV +R   Y +G  KDE++L  V DY+P                +PV +
Sbjct: 64  LQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIY 123
Query: 432 NKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIG-VHQLF---- 485
            K         + LA++H +    + H  +   N+++D       + D G   QL     
Sbjct: 124 VKLY--MYQLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEP 178
Query: 486 HTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGD-GELGI 543
           +  +  +  Y APEL F   +      +    DV+S G VL E+L G+ +  GD G   +
Sbjct: 179 NVSYICSRYYRAPELIFGATD------YTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQL 232
Query: 544 VKWVQMMG 551
           V+ ++++G
Sbjct: 233 VEIIKVLG 240

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 70/160 (43%), Gaps = 6/160 (3%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+  ++H N+V +   C  +   +++ +++                R  V+    L +A+
Sbjct: 67  VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC---NRQEVNAVVLLYMAT 123
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             +  + +L    K +  H  L++ N +V +     ++D G+ +L     +   A     
Sbjct: 124 QISSAMEYL---EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFP 180
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG 539
           +K+    + +  KF  + DV++FGV+L EI T  M+   G
Sbjct: 181 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG 220

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 70/160 (43%), Gaps = 6/160 (3%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+  ++H N+V +   C  +   +++ +++                R  V+    L +A+
Sbjct: 66  VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC---NRQEVNAVVLLYMAT 122
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             +  + +L    K +  H  L++ N +V +     ++D G+ +L     +   A     
Sbjct: 123 QISSAMEYL---EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFP 179
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG 539
           +K+    + +  KF  + DV++FGV+L EI T  M+   G
Sbjct: 180 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG 219

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 70/160 (43%), Gaps = 6/160 (3%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+  ++H N+V +   C  +   +++ +++                R  V+    L +A+
Sbjct: 64  VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC---NRQEVNAVVLLYMAT 120
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             +  + +L    K +  H  L++ N +V +     ++D G+ +L     +   A     
Sbjct: 121 QISSAMEYL---EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFP 177
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG 539
           +K+    + +  KF  + DV++FGV+L EI T  M+   G
Sbjct: 178 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG 217

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/239 (20%), Positives = 99/239 (41%), Gaps = 32/239 (13%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+  ++H N+V +   C  +   +++ +++                R  V     L +A+
Sbjct: 62  VMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLREC---NRQEVSAVVLLYMAT 118
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             +  + +L    K +  H  L++ N +V +     ++D G+ +L     +   A     
Sbjct: 119 QISSAMEYL---EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFP 175
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG-ELGIVKWVQMMGQDESAWE 558
           +K+    + +  KF  + DV++FGV+L EI T  M+   G +L  V            +E
Sbjct: 176 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQV------------YE 223
Query: 559 VFDFELIMDK------EMEEEMRXXXXXXXXXXXXXPKDRPNMSIVHRMIEDIRTKGSI 611
           + + +  M++      ++ E MR             P DRP+ + +H+  E +  + SI
Sbjct: 224 LLEKDYRMERPEGCPEKVYELMR-------ACWQWNPSDRPSFAEIHQAFETMFQESSI 275

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 70/160 (43%), Gaps = 6/160 (3%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+  ++H N+V +   C  +   +++ +++                R  V+    L +A+
Sbjct: 64  VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC---NRQEVNAVVLLYMAT 120
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             +  + +L    K +  H  L++ N +V +     ++D G+ +L     +   A     
Sbjct: 121 QISSAMEYL---EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFP 177
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG 539
           +K+    + +  KF  + DV++FGV+L EI T  M+   G
Sbjct: 178 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG 217

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 21/113 (18%)
Query: 433 KRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV----------H 482
           K + +A  +A+G+ +LH  +   + H  L S+NI + +     I D G+          H
Sbjct: 133 KLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSH 189
Query: 483 QLFHTPFFINDAYNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM 534
           Q       I   + APE ++  + N YS +      DVY+FG+VL E++TG++
Sbjct: 190 QFEQLSGSI--LWMAPEVIRMQDKNPYSFQ-----SDVYAFGIVLYELMTGQL 235

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/239 (20%), Positives = 99/239 (41%), Gaps = 32/239 (13%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+  ++H N+V +   C  +   +++ +++                R  V     L +A+
Sbjct: 62  VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC---NRQEVSAVVLLYMAT 118
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             +  + +L    K +  H  L++ N +V +     ++D G+ +L     +   A     
Sbjct: 119 QISSAMEYL---EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFP 175
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG-ELGIVKWVQMMGQDESAWE 558
           +K+    + +  KF  + DV++FGV+L EI T  M+   G +L  V            +E
Sbjct: 176 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQV------------YE 223
Query: 559 VFDFELIMDK------EMEEEMRXXXXXXXXXXXXXPKDRPNMSIVHRMIEDIRTKGSI 611
           + + +  M++      ++ E MR             P DRP+ + +H+  E +  + SI
Sbjct: 224 LLEKDYRMERPEGCPEKVYELMR-------ACWQWNPSDRPSFAEIHQAFETMFQESSI 275

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 21/113 (18%)
Query: 433 KRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV----------H 482
           K + +A  +A+G+ +LH  +   + H  L S+NI + +     I D G+          H
Sbjct: 132 KLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSH 188
Query: 483 QLFHTPFFINDAYNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM 534
           Q       I   + APE ++  + N YS +      DVY+FG+VL E++TG++
Sbjct: 189 QFEQLSGSI--LWMAPEVIRMQDKNPYSFQ-----SDVYAFGIVLYELMTGQL 234

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/239 (20%), Positives = 99/239 (41%), Gaps = 32/239 (13%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+  ++H N+V +   C  +   +++ +++                R  V     L +A+
Sbjct: 67  VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC---NRQEVSAVVLLYMAT 123
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             +  + +L    K +  H  L++ N +V +     ++D G+ +L     +   A     
Sbjct: 124 QISSAMEYL---EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFP 180
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG-ELGIVKWVQMMGQDESAWE 558
           +K+    + +  KF  + DV++FGV+L EI T  M+   G +L  V            +E
Sbjct: 181 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQV------------YE 228
Query: 559 VFDFELIMDK------EMEEEMRXXXXXXXXXXXXXPKDRPNMSIVHRMIEDIRTKGSI 611
           + + +  M++      ++ E MR             P DRP+ + +H+  E +  + SI
Sbjct: 229 LLEKDYRMERPEGCPEKVYELMR-------ACWQWNPSDRPSFAEIHQAFETMFQESSI 280

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 21/113 (18%)
Query: 433 KRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV----------H 482
           K + +A  +A+G+ +LH  +   + H  L S+NI + +     I D G+          H
Sbjct: 133 KLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSH 189
Query: 483 QLFHTPFFINDAYNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM 534
           Q       I   + APE ++  + N YS +      DVY+FG+VL E++TG++
Sbjct: 190 QFEQLSGSI--LWMAPEVIRMQDKNPYSFQ-----SDVYAFGIVLYELMTGQL 235

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+  ++H N+V +   C  +   +++ +++                R  V     L +A+
Sbjct: 62  VMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLREC---NRQEVSAVVLLYMAT 118
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             +  + +L    K +  H  L++ N +V +     ++D G+ +L     +   A     
Sbjct: 119 QISSAMEYL---EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFP 175
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG 539
           +K+    + +  KF  + DV++FGV+L EI T  M+   G
Sbjct: 176 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG 215

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 70/160 (43%), Gaps = 6/160 (3%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+  ++H N+V +   C  +   +++ +++                R  V+    L +A+
Sbjct: 62  VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC---NRQEVNAVVLLYMAT 118
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             +  + +L    K +  H  L++ N +V +     ++D G+ +L     +   A     
Sbjct: 119 QISSAMEYL---EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFP 175
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG 539
           +K+    + +  KF  + DV++FGV+L EI T  M+   G
Sbjct: 176 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG 215

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 70/160 (43%), Gaps = 6/160 (3%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+  ++H N+V +   C  +   +++ +++                R  V+    L +A+
Sbjct: 62  VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC---NRQEVNAVVLLYMAT 118
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             +  + +L    K +  H  L++ N +V +     ++D G+ +L     +   A     
Sbjct: 119 QISSAMEYL---EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFP 175
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG 539
           +K+    + +  KF  + DV++FGV+L EI T  M+   G
Sbjct: 176 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG 215

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/239 (20%), Positives = 100/239 (41%), Gaps = 32/239 (13%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+  ++H N+V +   C  +   +++ +++                R  V+    L +A+
Sbjct: 75  VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC---NRQEVNAVVLLYMAT 131
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             +  + +L    K +  H  L++ N +V +     ++D G+ +L     +   A     
Sbjct: 132 QISSAMEYL---EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFP 188
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG-ELGIVKWVQMMGQDESAWE 558
           +K+    + +  KF  + DV++FGV+L EI T  M+   G +L  V            +E
Sbjct: 189 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQV------------YE 236
Query: 559 VFDFELIMDK------EMEEEMRXXXXXXXXXXXXXPKDRPNMSIVHRMIEDIRTKGSI 611
           + + +  M++      ++ E MR             P DRP+ + +H+  E +  + SI
Sbjct: 237 LLEKDYRMERPEGCPEKVYELMR-------ACWQWNPSDRPSFAEIHQAFETMFQESSI 288

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 21/113 (18%)
Query: 433 KRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV----------H 482
           K + +A  +A+G+ +LH  +   + H  L S+NI + +     I D G+          H
Sbjct: 125 KLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSH 181
Query: 483 QLFHTPFFINDAYNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM 534
           Q       I   + APE ++  + N YS +      DVY+FG+VL E++TG++
Sbjct: 182 QFEQLSGSI--LWMAPEVIRMQDKNPYSFQ-----SDVYAFGIVLYELMTGQL 227

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/239 (20%), Positives = 99/239 (41%), Gaps = 32/239 (13%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+  ++H N+V +   C  +   +++ +++                R  V     L +A+
Sbjct: 62  VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC---NRQEVSAVVLLYMAT 118
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE 499
             +  + +L    K +  H  L++ N +V +     ++D G+ +L     +   A     
Sbjct: 119 QISSAMEYL---EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFP 175
Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG-ELGIVKWVQMMGQDESAWE 558
           +K+    + +  KF  + DV++FGV+L EI T  M+   G +L  V            +E
Sbjct: 176 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQV------------YE 223
Query: 559 VFDFELIMDK------EMEEEMRXXXXXXXXXXXXXPKDRPNMSIVHRMIEDIRTKGSI 611
           + + +  M++      ++ E MR             P DRP+ + +H+  E +  + SI
Sbjct: 224 LLEKDYRMERPEGCPEKVYELMR-------ACWQWNPSDRPSFAEIHQAFETMFQESSI 275

>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor Length = 307

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 424 PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ 483
           PGR P    + +++A++ A G+A+L   N     H +L++ N +V       I D G+ +
Sbjct: 123 PGRPPPTLQEMIQMAAEIADGMAYL---NAKKFVHRNLAARNCMVAHDFTVKIGDFGMTR 179
Query: 484 -LFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEI 529
            ++ T ++         +++    +     F    D++SFGVVL EI
Sbjct: 180 DIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEI 226

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 21/113 (18%)
Query: 433 KRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV----------H 482
           K + +A  +A+G+ +LH  +   + H  L S+NI + +     I D G+          H
Sbjct: 110 KLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSH 166
Query: 483 QLFHTPFFINDAYNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM 534
           Q       I   + APE ++  + N YS +      DVY+FG+VL E++TG++
Sbjct: 167 QFEQLSGSI--LWMAPEVIRMQDKNPYSFQ-----SDVYAFGIVLYELMTGQL 212

>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 424 PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ 483
           PGR P    + +++A++ A G+A+L   N     H  L++ N +V       I D G+ +
Sbjct: 122 PGRPPPTLQEMIQMAAEIADGMAYL---NAKKFVHRDLAARNCMVAHDFTVKIGDFGMTR 178
Query: 484 -LFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEI 529
            ++ T ++         +++    +     F    D++SFGVVL EI
Sbjct: 179 DIYETAYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEI 225

>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 424 PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ 483
           PGR P    + +++A++ A G+A+L   N     H +L++ N +V       I D G+ +
Sbjct: 122 PGRPPPTLQEMIQMAAEIADGMAYL---NAKKFVHRNLAARNCMVAHDFTVKIGDFGMTR 178
Query: 484 -LFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEI 529
            ++ T ++         +++    +     F    D++SFGVVL EI
Sbjct: 179 DIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEI 225

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 21/113 (18%)
Query: 433 KRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV----------H 482
           K + +A  +A+G+ +LH  +   + H  L S+NI + +     I D G+          H
Sbjct: 110 KLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSH 166
Query: 483 QLFHTPFFINDAYNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM 534
           Q       I   + APE ++  + N YS +      DVY+FG+VL E++TG++
Sbjct: 167 QFEQLSGSI--LWMAPEVIRMQDKNPYSFQ-----SDVYAFGIVLYELMTGQL 212

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 21/113 (18%)
Query: 433 KRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV----------H 482
           K + +A  +A+G+ +LH  +   + H  L S+NI + +     I D G+          H
Sbjct: 105 KLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSH 161
Query: 483 QLFHTPFFINDAYNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM 534
           Q       I   + APE ++  + N YS +      DVY+FG+VL E++TG++
Sbjct: 162 QFEQLSGSI--LWMAPEVIRMQDKNPYSFQ-----SDVYAFGIVLYELMTGQL 207

>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo Pyridine Inhibitor Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 424 PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ 483
           PGR P    + +++A++ A G+A+L   N     H  L++ N +V       I D G+ +
Sbjct: 121 PGRPPPTLQEMIQMAAEIADGMAYL---NAKKFVHRDLAARNCMVAHDFTVKIGDFGMTR 177
Query: 484 -LFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEI 529
            ++ T ++         +++    +     F    D++SFGVVL EI
Sbjct: 178 DIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEI 224

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 24/165 (14%)
Query: 380 VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLAS 439
           V+   RH NI+    Y   KD L +V  +                 +M     + + +A 
Sbjct: 85  VLRKTRHVNILLFMGYMT-KDNLAIVTQWCEGSSLYKHLHVQETKFQM----FQLIDIAR 139
Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV---------HQLFHTPFF 490
            +A+G+ +LH  N   + H  + S+NI + +     I D G+          Q    P  
Sbjct: 140 QTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTG 196
Query: 491 INDAYNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM 534
            +  + APE ++  +NN +S +      DVYS+G+VL E++TG++
Sbjct: 197 -SVLWMAPEVIRMQDNNPFSFQ-----SDVYSYGIVLYELMTGEL 235

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 21/113 (18%)
Query: 433 KRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV----------H 482
           K + +A  +A+G+ +LH  +   + H  L S+NI + +     I D G+          H
Sbjct: 105 KLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSH 161
Query: 483 QLFHTPFFINDAYNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM 534
           Q       I   + APE ++  + N YS +      DVY+FG+VL E++TG++
Sbjct: 162 QFEQLSGSI--LWMAPEVIRMQDKNPYSFQ-----SDVYAFGIVLYELMTGQL 207

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 21/113 (18%)
Query: 433 KRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV----------H 482
           K + +A  +A+G+ +LH  +   + H  L S+NI + +     I D G+          H
Sbjct: 107 KLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSH 163
Query: 483 QLFHTPFFINDAYNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM 534
           Q       I   + APE ++  + N YS +      DVY+FG+VL E++TG++
Sbjct: 164 QFEQLSGSI--LWMAPEVIRMQDKNPYSFQ-----SDVYAFGIVLYELMTGQL 209

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/162 (19%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 379 RVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLA 438
           +V+  L H  +V +   C  +  +F++ +Y+                R      + L++ 
Sbjct: 56  KVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREM----RHRFQTQQLLEMC 111
Query: 439 SDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAP 498
            D  + + +L         H  L++ N +V+  G   +SD G+ +     + ++D Y + 
Sbjct: 112 KDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSR-----YVLDDEYTSS 163
Query: 499 E-----LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKM 534
                 ++++        KF  + D+++FGV++ EI + GKM
Sbjct: 164 RGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKM 205

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/162 (19%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 379 RVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLA 438
           +V+  L H  +V +   C  +  +F++ +Y+                R      + L++ 
Sbjct: 71  KVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREM----RHRFQTQQLLEMC 126
Query: 439 SDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAP 498
            D  + + +L         H  L++ N +V+  G   +SD G+ +     + ++D Y + 
Sbjct: 127 KDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSR-----YVLDDEYTSS 178
Query: 499 -----ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKM 534
                 ++++        KF  + D+++FGV++ EI + GKM
Sbjct: 179 VGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKM 220

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 21/113 (18%)
Query: 433 KRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV----------H 482
           K + +A  +A+G+ +LH  +   + H  L S+NI + +     I D G+          H
Sbjct: 105 KLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSH 161
Query: 483 QLFHTPFFINDAYNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM 534
           Q       I   + APE ++  + N YS +      DVY+FG+VL E++TG++
Sbjct: 162 QFEQLSGSI--LWMAPEVIRMQDKNPYSFQ-----SDVYAFGIVLYELMTGQL 207

>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Human Insulin Receptor Length = 306

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 424 PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ 483
           PGR P    + +++A++ A G+A+L   N     H  L++ N +V       I D G+ +
Sbjct: 122 PGRPPPTLQEMIQMAAEIADGMAYL---NAKKFVHRDLAARNCMVAHDFTVKIGDFGMTR 178
Query: 484 -LFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEI 529
            ++ T ++         +++    +     F    D++SFGVVL EI
Sbjct: 179 DIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEI 225

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/162 (19%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 379 RVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLA 438
           +V+  L H  +V +   C  +  +F++ +Y+                R      + L++ 
Sbjct: 55  KVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREM----RHRFQTQQLLEMC 110
Query: 439 SDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAP 498
            D  + + +L         H  L++ N +V+  G   +SD G+ +     + ++D Y + 
Sbjct: 111 KDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSR-----YVLDDEYTSS 162
Query: 499 -----ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKM 534
                 ++++        KF  + D+++FGV++ EI + GKM
Sbjct: 163 VGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKM 204

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/162 (19%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 379 RVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPXXXXXXXXXXXXXPGRMPVDWNKRLKLA 438
           +V+  L H  +V +   C  +  +F++ +Y+                R      + L++ 
Sbjct: 62  KVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREM----RHRFQTQQLLEMC 117
Query: 439 SDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAP 498
            D  + + +L         H  L++ N +V+  G   +SD G+ +     + ++D Y + 
Sbjct: 118 KDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSR-----YVLDDEYTSS 169
Query: 499 -----ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKM 534
                 ++++        KF  + D+++FGV++ EI + GKM
Sbjct: 170 VGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKM 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	640
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	1e-55
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-53
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	5e-52
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-30
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-40
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	6e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-17
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-38
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	3e-38
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	7e-38
3q4u_A	301	Activin receptor type-1; structural genomics conso	1e-37
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	3e-36
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	6e-33
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	2e-32
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-32
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	2e-30
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	3e-30
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	9e-30
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-29
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	8e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	1e-18
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	6e-18
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	7e-18
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	2e-17
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	3e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-10
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	1e-16
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	2e-16
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	4e-16
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	4e-16
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	5e-16
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	6e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-05
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	1e-15
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	2e-15
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	3e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	4e-15
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	4e-15
3pls_A	298	Macrophage-stimulating protein receptor; protein k	5e-15
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	5e-15
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	6e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-10
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	8e-15
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	9e-15
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	9e-15
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	9e-15
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	1e-14
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-10
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	1e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-09
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	2e-14
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	2e-14
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	3e-14
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	3e-14
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	3e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-05
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	3e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-12
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	4e-14
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	6e-14
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	7e-14
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	7e-14
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	7e-14
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	8e-14
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	9e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	1e-13
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	2e-13
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	2e-13
2a19_B	284	Interferon-induced, double-stranded RNA-activated	2e-13
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	2e-13
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	2e-13
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	3e-13
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	3e-13
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-08
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	5e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	6e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-07
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	7e-13
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	8e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	9e-13
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	1e-12
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	1e-12
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	1e-12
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	1e-12
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	2e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	3e-12
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	3e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	5e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-07
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	9e-12
4aoj_A	329	High affinity nerve growth factor receptor; transf	9e-12
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	1e-11
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	1e-11
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	1e-11
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	2e-11
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-06
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-11
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	3e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	3e-11
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	3e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-11
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	5e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	9e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-04
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	2e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-06
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	3e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-06
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	4e-10
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	4e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-04
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	5e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-05
2dyl_A	318	Dual specificity mitogen-activated protein kinase	6e-10
3aln_A	327	Dual specificity mitogen-activated protein kinase;	1e-09
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	1e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	1e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
3fme_A	290	Dual specificity mitogen-activated protein kinase;	2e-09
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	2e-09
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	3e-09
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	4e-09
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	5e-09
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	5e-09
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	5e-09
3an0_A	340	Dual specificity mitogen-activated protein kinase;	6e-09
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-08
3uqc_A	286	Probable conserved transmembrane protein; structur	1e-08
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-08
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	6e-08
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	7e-08
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	1e-07
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	1e-07
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	1e-07
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	1e-07
3niz_A	311	Rhodanese family protein; structural genomics, str	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	3e-07
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	4e-07
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	6e-07
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	7e-07
3o0g_A	292	Cell division protein kinase 5; kinase activator c	1e-06
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-06
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	2e-06
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	2e-06
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	2e-06
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	3e-06
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	3e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
3ork_A	311	Serine/threonine protein kinase; structural genomi	4e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-06
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	7e-06
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	7e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-06
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	7e-06
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	8e-06
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-05
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	1e-05
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	1e-05
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	1e-05
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	2e-05
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-05
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	3e-05
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	3e-05
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	4e-05
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	4e-05
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	4e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-04
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	6e-05
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	6e-05
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	7e-05
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	7e-05
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	7e-05
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	8e-05
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	9e-05
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	1e-04
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	1e-04
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-04
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	2e-04
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	2e-04
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	2e-04
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	2e-04
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	3e-04
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	3e-04
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	5e-04
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	5e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-04
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	7e-04
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	8e-04
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	8e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  190 bits (486), Expect = 1e-55
 Identities = 89/289 (30%), Positives = 149/289 (51%), Gaps = 35/289 (12%)

Query: 336 SSAELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSI 392
           S+  +LG+G  G  YK  L  G +V VKR++E + +    ++     +I    H N++ +
Sbjct: 33  SNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRL 92

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
           R +C    E  LVY Y+ +GS+ S L   R   + P+DW KR ++A  SA+GLA+LH + 
Sbjct: 93  RGFCMTPTERLLVYPYMANGSVASCLRE-RPESQPPLDWPKRQRIALGSARGLAYLHDHC 151

Query: 453 KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA-----------YNAPELK 501
              + H  + ++NI++D+   A + D G+ +L        D            + APE  
Sbjct: 152 DPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDY----KDTHVTTAVRGTIGHIAPE-- 205

Query: 502 FNNNNNYSQR-KFWQRCDVYSFGVVLLEILTGKMA------KGDGELGIVKWVQMMGQDE 554
                 Y    K  ++ DV+ +GV+LLE++TG+ A        D ++ ++ WV+ + +++
Sbjct: 206 ------YLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEK 259

Query: 555 SAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIE 603
               + D +L      +EE+  L+QVALLC    P +RP MS V RM+E
Sbjct: 260 KLEALVDVDL-QGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLE 307

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  184 bits (469), Expect = 2e-53
 Identities = 78/305 (25%), Positives = 133/305 (43%), Gaps = 49/305 (16%)

Query: 325 KGFRNVGDLLKSSAELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREV---DEWL--- 378
             F      +      +G+G  G  YK  ++    V VK++             ++    
Sbjct: 25  NNFDE--RPISVGGNKMGEGGFGVVYKGYVNNT-TVAVKKLAAMVDITTEELKQQFDQEI 81

Query: 379 RVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLA 438
           +V+   +H N+V +  + +  D+L LVY Y+P+GSL   L      G  P+ W+ R K+A
Sbjct: 82  KVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLD--GTPPLSWHMRCKIA 139

Query: 439 SDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFIND----- 493
             +A G+ FLH     H+ H  + S+NI++D+   A ISD G+ +               
Sbjct: 140 QGAANGINFLH--ENHHI-HRDIKSANILLDEAFTAKISDFGLARASEK----FAQTVMT 192

Query: 494 -------AYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA--KGDGELGIV 544
                  AY APE          + +   + D+YSFGVVLLEI+TG  A  +      ++
Sbjct: 193 SRIVGTTAYMAPE--------ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLL 244

Query: 545 KWVQMMGQDESAWEVFDFELIMDKEME----EEMRALLQVALLCLAPLPKDRPNMSIVHR 600
              + +  +E        E  +DK+M       + A+  VA  CL      RP++  V +
Sbjct: 245 DIKEEIEDEEK-----TIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQ 299

Query: 601 MIEDI 605
           +++++
Sbjct: 300 LLQEM 304

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  181 bits (461), Expect = 5e-52
 Identities = 79/296 (26%), Positives = 133/296 (44%), Gaps = 50/296 (16%)

Query: 336 SSAELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWL---RVIGGLRHSNIVSI 392
               L+G G  G  YK VL  G  V +KR R  +  + ++E+      +   RH ++VS+
Sbjct: 42  DHKFLIGHGVFGKVYKGVLRDGAKVALKR-RTPESSQGIEEFETEIETLSFCRHPHLVSL 100

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
             +C+ ++E+ L+Y Y+ +G+L   L+GS  P  M + W +RL++   +A+GL +LH   
Sbjct: 101 IGFCDERNEMILIYKYMENGNLKRHLYGSDLP-TMSMSWEQRLEICIGAARGLHYLH--- 156

Query: 453 KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF------H-------TPFFINDAYNAPE 499
              + H  + S NI++D+     I+D G+ +        H       T       Y  PE
Sbjct: 157 TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTL-----GYIDPE 211

Query: 500 LKFNNNNNYSQR-KFWQRCDVYSFGVVLLEILTGK----MAKGDGELGIVKWVQMMGQDE 554
                   Y  + +  ++ DVYSFGVVL E+L  +     +     + + +W      + 
Sbjct: 212 --------YFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNG 263

Query: 555 SAWEVFDFELIMDKEME-----EEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
                   E I+D  +      E +R     A+ CLA   +DRP+M  V   +E  
Sbjct: 264 ------QLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYA 313

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  166 bits (421), Expect = 2e-46
 Identities = 65/300 (21%), Positives = 110/300 (36%), Gaps = 46/300 (15%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLR-----VIGGLRHSNIVSIR 393
           E+  +G  G  +K  L    V V K        ++   W        + G++H NI+   
Sbjct: 30  EVKARGRFGCVWKAQLLNEYVAV-KIF----PIQDKQSWQNEYEVYSLPGMKHENILQFI 84

Query: 394 AYC----NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH 449
                  +   +L+L+  +   GSL   L  +       V WN+   +A   A+GLA+LH
Sbjct: 85  GAEKRGTSVDVDLWLITAFHEKGSLSDFLKAN------VVSWNELCHIAETMARGLAYLH 138

Query: 450 -------GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA-------- 494
                    +K  + H  + S N+++     ACI+D G+   F       D         
Sbjct: 139 EDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRR 198

Query: 495 YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKG----DGELGIVKWVQMM 550
           Y APE+      N+ +  F  R D+Y+ G+VL E+ +   A      +  L   + +   
Sbjct: 199 YMAPEV-LEGAINFQRDAF-LRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQH 256

Query: 551 GQDESAWEVFDFEL----IMDK-EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
              E   EV   +     + D  +    M  L +    C     + R +   V   I  +
Sbjct: 257 PSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQM 316

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  152 bits (387), Expect = 9e-42
 Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 16/192 (8%)

Query: 25  SDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTH--RVIKLVLEDLDLTG 82
            D   LL  K  +   + +LSSW+ +TD C  +W GV C+  T   RV  L L  L+L  
Sbjct: 6   QDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64

Query: 83  PAEV---LSRLTQLRLLSL-KNNLLS----SSNLNLSSWPHLKHLYLSHNRFTGTFPSGV 134
           P  +   L+ L  L  L +   N L      +   L+    L +LY++H   +G  P  +
Sbjct: 65  PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT---QLHYLYITHTNVSGAIPDFL 121

Query: 135 SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTL-YSVNSSSRSILDFN 193
           S ++ L  +D S+NA  G +P   ++ LPNL+ +  + NR +G +  S  S S+      
Sbjct: 122 SQIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180

Query: 194 VSNNQLSGQIPA 205
           +S N+L+G+IP 
Sbjct: 181 ISRNRLTGKIPP 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  119 bits (302), Expect = 4e-30
 Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 38/191 (19%)

Query: 75  LEDLDL-----TG--PAEVLSRLTQLRLLSLKNNLLSSS-------------NLNLS--- 111
           L  LD      +G  P   +S L  L  ++   N +S +             ++ +S   
Sbjct: 127 LVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185

Query: 112 ---SWP------HLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRL 162
                P      +L  + LS N   G       S ++ +++ L+ N+   ++   ++   
Sbjct: 186 LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLS 243

Query: 163 PNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPA--WMSPFGGSSFAGNKN 220
            NL  L L +NR  GTL    +  + +   NVS N L G+IP    +  F  S++A NK 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303

Query: 221 LCGRPLPSDCS 231
           LCG PLP+ C+
Sbjct: 304 LCGSPLPA-CT 313

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  149 bits (378), Expect = 2e-40
 Identities = 70/340 (20%), Positives = 115/340 (33%), Gaps = 66/340 (19%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKK---REVDEWLRVIGGLRHSNIVSIRAY 395
           EL+G+G  GA YK  LD   V V K      ++    E + +   +  + H NI      
Sbjct: 19  ELIGRGRYGAVYKGSLDERPVAV-KVFSFANRQNFINEKNIYR--VPLMEHDNIARFIVG 75

Query: 396 C-----NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH- 449
                 +G+ E  LV +Y P+GSL   L           DW    +LA    +GLA+LH 
Sbjct: 76  DERVTADGRMEYLLVMEYYPNGSLXKYLS------LHTSDWVSSCRLAHSVTRGLAYLHT 129

Query: 450 -----GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA---------- 494
                 + K  + H  L+S N++V   G   ISD G+         +             
Sbjct: 130 ELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEV 189

Query: 495 ----YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQM- 549
               Y APE+     N        ++ D+Y+ G++  EI         G    V   QM 
Sbjct: 190 GTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPG--ESVPEYQMA 247

Query: 550 ----MGQDESAWEVFDFELIMDK---------EMEEEMRALLQVALLCLAPLPKDRPNMS 596
               +G   +  ++        +         E    +R+L +    C     + R    
Sbjct: 248 FQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQ 307

Query: 597 IVHRMIEDIRTKGSIDGCANSIMNNISSDSSPSQSENTYN 636
                +               +M     + S S + + ++
Sbjct: 308 XAEERMA-------------ELMMIWERNKSVSPTAHHHH 334

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  151 bits (384), Expect = 1e-38
 Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 14/199 (7%)

Query: 15  FSLCLSNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTHRVIKLV 74
           F    S S Y +I  L+SFK  +    + L  W ++ +PC  ++ GVTC     +V  + 
Sbjct: 2   FQASPSQSLYREIHQLISFKDVLP-DKNLLPDWSSNKNPC--TFDGVTCR--DDKVTSID 56

Query: 75  LEDLDLTGP----AEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTF 130
           L    L       +  L  LT L  L L N+ ++ S         L  L LS N  +G  
Sbjct: 57  LSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPV 116

Query: 131 PSGVS--SLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTL---YSVNSS 185
            +  S  S   L+ +++S N  +    ++   +L +L  L L  N  +G     + ++  
Sbjct: 117 TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176

Query: 186 SRSILDFNVSNNQLSGQIP 204
              +    +S N++SG + 
Sbjct: 177 CGELKHLAISGNKISGDVD 195

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  108 bits (272), Expect = 9e-25
 Identities = 51/168 (30%), Positives = 74/168 (44%), Gaps = 13/168 (7%)

Query: 75  LEDLDL-----TG--PAEVLSRLTQLRLLSLKNNLLSSS-NLNLSSWPHLKHLYLSHNRF 126
           L  L L     +G  P+  L  L++LR L L  N+L       L     L+ L L  N  
Sbjct: 420 LVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478

Query: 127 TGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSS 186
           TG  PSG+S+  +L  + LS+N   GEIP   + RL NL  L+L +N F+G + +     
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGNIPAELGDC 537

Query: 187 RSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPLPSDCSNRT 234
           RS++  +++ N  +G IPA        S     N           N  
Sbjct: 538 RSLIWLDLNTNLFNGTIPAA---MFKQSGKIAANFIAGKRYVYIKNDG 582

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  106 bits (266), Expect = 6e-24
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 15/143 (10%)

Query: 75  LEDLDL-------TGPAEVLSRLTQLRLLSLKNNLLS----SSNLNLSSWPHLKHLYLSH 123
           L+ L++        G      +L  L +L L  N +S       +       LKHL +S 
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187

Query: 124 NRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVN 183
           N+ +G     VS   +L  +D+S N +   IP   L     L  L +  N+ +G      
Sbjct: 188 NKISGDVD--VSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAI 243

Query: 184 SSSRSILDFNVSNNQLSGQIPAW 206
           S+   +   N+S+NQ  G IP  
Sbjct: 244 STCTELKLLNISSNQFVGPIPPL 266

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  105 bits (265), Expect = 7e-24
 Identities = 50/194 (25%), Positives = 78/194 (40%), Gaps = 38/194 (19%)

Query: 75  LEDLDLTG-------PAEVLSRLTQLRLLSLKNNLLS----SSNL-----------NLS- 111
           L+ LD++G           +S  T+L+LL++ +N          L             + 
Sbjct: 225 LQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTG 283

Query: 112 --------SWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLP 163
                   +   L  L LS N F G  P    S   L  + LS N + GE+PM  L ++ 
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343

Query: 164 NLLTLRLEDNRFTGTL-YSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSS----FAGN 218
            L  L L  N F+G L  S+ + S S+L  ++S+N  SG I   +     ++    +  N
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403

Query: 219 KNLCGRPLPSDCSN 232
               G  +P   SN
Sbjct: 404 NGFTG-KIPPTLSN 416

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  105 bits (265), Expect = 8e-24
 Identities = 39/192 (20%), Positives = 64/192 (33%), Gaps = 34/192 (17%)

Query: 87  LSRLTQLRLLSLKNNLLSSS---NLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRV 143
           +      +      NLL      +  L+         ++   + G       +   +  +
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637

Query: 144 DLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQI 203
           D+S+N   G IP  E+  +P L  L L  N  +G++       R +   ++S+N+L G+I
Sbjct: 638 DMSYNMLSGYIP-KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696

Query: 204 PAWMS-------------------PFGG-------SSFAGNKNLCGRPLPSDCSNRTVEP 237
           P  MS                   P  G       + F  N  LCG PLP    +     
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPS----N 752

Query: 238 EQPPRSRPRSSR 249
                   RS  
Sbjct: 753 ADGYAHHQRSHH 764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  102 bits (256), Expect = 9e-23
 Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 14/142 (9%)

Query: 75  LEDLDLTG-------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFT 127
           L+ L ++G           +SR   L  L + +N  S+    L     L+HL +S N+ +
Sbjct: 180 LKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS 236

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTL-YSVNSSS 186
           G F   +S+   L+ +++S N + G IP      L +L  L L +N+FTG +   ++ + 
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIP---PLPLKSLQYLSLAENKFTGEIPDFLSGAC 293

Query: 187 RSILDFNVSNNQLSGQIPAWMS 208
            ++   ++S N   G +P +  
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFG 315

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  100 bits (251), Expect = 3e-22
 Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 19/157 (12%)

Query: 75  LEDLDL-----TG--PAEVLSRLTQLRLLSLKNNLLS---SSNLNLSSWPHLKHLYLSHN 124
           L+ LDL     +G  P  + +    L  L L +N  S     NL  +    L+ LYL +N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404

Query: 125 RFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNS 184
            FTG  P  +S+   L  + LS N   G IP + L  L  L  L+L  N   G +     
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIP-SSLGSLSKLRDLKLWLNMLEGEIPQELM 463

Query: 185 SSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
             +++    +  N L+G+IP        S  +   NL
Sbjct: 464 YVKTLETLILDFNDLTGEIP--------SGLSNCTNL 492

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.9 bits (242), Expect = 4e-21
 Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 9/139 (6%)

Query: 73  LVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLS----SSNLNLSSWPHLKHLYLSHNRFTG 128
           L +   + +     L   + L+ L +  N LS     +    +    LK L +S N+F G
Sbjct: 205 LDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTE---LKLLNISSNQFVG 261

Query: 129 TFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRS 188
             P     L+ L+ + L+ N + GEIP         L  L L  N F G +     S   
Sbjct: 262 PIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319

Query: 189 ILDFNVSNNQLSGQIPAWM 207
           +    +S+N  SG++P   
Sbjct: 320 LESLALSSNNFSGELPMDT 338

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.6 bits (210), Expect = 3e-17
 Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 75  LEDLDL-----TG--PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSW----PHLKHLYLSH 123
           LE L L     TG  P+  LS  T L  +SL NN L+     +  W     +L  L LS+
Sbjct: 468 LETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGE---IPKWIGRLENLAILKLSN 523

Query: 124 NRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSV- 182
           N F+G  P+ +   R L  +DL+ N + G IP   + +    +      N   G  Y   
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP-AAMFKQSGKIA----ANFIAGKRYVYI 578

Query: 183 -NSSSRSILDFNVSNNQLSGQIPAWMSPF 210
            N   +       +  +  G     ++  
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRL 607

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score =  144 bits (364), Expect = 2e-38
 Identities = 73/304 (24%), Positives = 117/304 (38%), Gaps = 42/304 (13%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEW-LRVIGGLRHSNIVSIRAYC- 396
           E +GKG  G  ++    G +V V K    R+++    E  +     LRH NI+   A   
Sbjct: 48  ESIGKGRFGEVWRGKWRGEEVAV-KIFSSREERSWFREAEIYQTVMLRHENILGFIAADN 106

Query: 397 ---NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH---- 449
                  +L+LV DY  HGSL   L+      R  V     +KLA  +A GLA LH    
Sbjct: 107 KDNGTWTQLWLVSDYHEHGSLFDYLN------RYTVTVEGMIKLALSTASGLAHLHMEIV 160

Query: 450 -GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA----------YNAP 498
               K  + H  L S NI+V + G  CI+D+G+     +     D           Y AP
Sbjct: 161 GTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAP 220

Query: 499 ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE 558
           E+  +++ N    + ++R D+Y+ G+V  EI       G  E   + +  ++  D S  E
Sbjct: 221 EV-LDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEE 279

Query: 559 VFDF-----------ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT 607
           +                    E    M  +++    C       R     + + +  +  
Sbjct: 280 MRKVVCEQKLRPNIPNRWQSCEALRVMAKIMR---ECWYANGAARLTALRIKKTLSQLSQ 336

Query: 608 KGSI 611
           +  I
Sbjct: 337 QEGI 340

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  141 bits (359), Expect = 3e-38
 Identities = 64/283 (22%), Positives = 121/283 (42%), Gaps = 40/283 (14%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRA 394
             L +   G  +K    G D+VV K ++ R    +K R+ +E    +    H N++ +  
Sbjct: 16  TKLNENHSGELWKGRWQGNDIVV-KVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLG 74

Query: 395 YCNG--KDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
            C         L+  ++P+GSL+++LH         VD ++ +K A D A+G+AFLH   
Sbjct: 75  ACQSPPAPHPTLITHWMPYGSLYNVLHEGTNF---VVDQSQAVKFALDMARGMAFLHTLE 131

Query: 453 KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH------TPFFINDAYNAPELKFNNNN 506
              +    L+S ++++D+   A IS   V   F        P     A+ APE       
Sbjct: 132 PL-IPRHALNSRSVMIDEDMTARISMADVKFSFQSPGRMYAP-----AWVAPEALQKKPE 185

Query: 507 NYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQDESAWEVFDFELI 565
           + ++R      D++SF V+L E++T ++       + I   V + G              
Sbjct: 186 DTNRRS----ADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGL----------RPT 231

Query: 566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK 608
           +   +   +  L++   +C+   P  RP   ++  ++E ++ K
Sbjct: 232 IPPGISPHVSKLMK---ICMNEDPAKRPKFDMIVPILEKMQDK 271

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score =  142 bits (360), Expect = 7e-38
 Identities = 70/300 (23%), Positives = 116/300 (38%), Gaps = 46/300 (15%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKK---KREVDEWLRVIGGLRHSNIVSIRAY 395
           + +GKG  G  +     G  V V K     ++    RE + +  V   +RH NI+   A 
Sbjct: 43  KQIGKGRYGEVWMGKWRGEKVAV-KVFFTTEEASWFRETEIYQTV--LMRHENILGFIAA 99

Query: 396 C----NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY 451
                    +L+L+ DY  +GSL+  L          +D    LKLA  S  GL  LH  
Sbjct: 100 DIKGTGSWTQLYLITDYHENGSLYDYLK------STTLDAKSMLKLAYSSVSGLCHLHTE 153

Query: 452 NKAHLF-----HGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA----------YN 496
             +        H  L S NI+V + G  CI+D+G+   F +     D           Y 
Sbjct: 154 IFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYM 213

Query: 497 APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESA 556
            PE+  + + N +  + +   D+YSFG++L E+    ++ G  E   + +  ++  D S 
Sbjct: 214 PPEV-LDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSY 272

Query: 557 WEVFDF-----------ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
            ++ +                  E   +M  L+     C A  P  R     V + +  +
Sbjct: 273 EDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTE---CWAHNPASRLTALRVKKTLAKM 329

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score =  141 bits (357), Expect = 1e-37
 Identities = 67/297 (22%), Positives = 113/297 (38%), Gaps = 40/297 (13%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKK---REVDEWLRVIGGLRHSNIVSIRAY 395
           E +GKG  G  ++    G +V V K    R +K   RE +  L     LRH NI+   A 
Sbjct: 14  ECVGKGRYGEVWRGSWQGENVAV-KIFSSRDEKSWFRETE--LYNTVMLRHENILGFIAS 70

Query: 396 C----NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY 451
                +   +L+L+  Y   GSL+  L          +D    L++    A GLA LH  
Sbjct: 71  DMTSRHSSTQLWLITHYHEMGSLYDYLQ------LTTLDTVSCLRIVLSIASGLAHLHIE 124

Query: 452 NKAHLF-----HGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN---------- 496
                      H  L S NI+V + G  CI+D+G+  +        D  N          
Sbjct: 125 IFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYM 184

Query: 497 APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESA 556
           APE+  +          ++R D+++FG+VL E+    ++ G  E     +  ++  D S 
Sbjct: 185 APEV-LDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSF 243

Query: 557 WEVFDF--------ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
            ++            +      +  + +L ++   C    P  R     + + +  I
Sbjct: 244 EDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  137 bits (346), Expect = 3e-36
 Identities = 59/279 (21%), Positives = 115/279 (41%), Gaps = 37/279 (13%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNG 398
           E++G+G  G   K      DV + K+I    +++     LR +  + H NIV +   C  
Sbjct: 14  EVVGRGAFGVVCKAKWRAKDVAI-KQIESESERKAFIVELRQLSRVNHPNIVKLYGAC-- 70

Query: 399 KDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFH 458
            + + LV +Y   GSL+++LHG+             +      ++G+A+LH      L H
Sbjct: 71  LNPVCLVMEYAEGGSLYNVLHGAEPL--PYYTAAHAMSWCLQCSQGVAYLHSMQPKALIH 128

Query: 459 GHLSSSNIVVDQLGNAC-ISDIGVHQLFH--------TPFFINDAYNAPELKFNNNNNYS 509
             L   N+++   G    I D G              +      A+ APE+     +NYS
Sbjct: 129 RDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSA-----AWMAPEV--FEGSNYS 181

Query: 510 QRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKE 569
                ++CDV+S+G++L E++T +    +      + +  +               + K 
Sbjct: 182 -----EKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTR--------PPLIKN 228

Query: 570 MEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK 608
           + + + +L+     C +  P  RP+M  + +++  +   
Sbjct: 229 LPKPIESLMT---RCWSKDPSQRPSMEEIVKIMTHLMRY 264

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  127 bits (322), Expect = 6e-33
 Identities = 72/282 (25%), Positives = 124/282 (43%), Gaps = 43/282 (15%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKK--------KREVDEWLRVIGGLRHSNIV 390
           E +G G  G  ++    G DV V K + E+           REV     ++  LRH NIV
Sbjct: 43  EKIGAGSFGTVHRAEWHGSDVAV-KILMEQDFHAERVNEFLREV----AIMKRLRHPNIV 97

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
                      L +V +YL  GSL+ LLH  +   R  +D  +RL +A D AKG+ +LH 
Sbjct: 98  LFMGAVTQPPNLSIVTEYLSRGSLYRLLH--KSGAREQLDERRRLSMAYDVAKGMNYLHN 155

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA------YNAPELKFNN 504
            N   + H +L S N++VD+     + D G+ +L  + F  + +      + APE+    
Sbjct: 156 RNPPIV-HRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVL--R 212

Query: 505 NNNYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQDESAWEVFDFE 563
           +   +     ++ DVYSFGV+L E+ T +          +V  V    +           
Sbjct: 213 DEPSN-----EKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCK----------R 257

Query: 564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
           L + + +  ++ A+++    C    P  RP+ + +  ++  +
Sbjct: 258 LEIPRNLNPQVAAIIE---GCWTNEPWKRPSFATIMDLLRPL 296

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  125 bits (316), Expect = 2e-32
 Identities = 69/291 (23%), Positives = 119/291 (40%), Gaps = 56/291 (19%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRE------RKKKREVDEWLRVIGGLRHSNIVSI 392
           E++G G  G  Y+    G +V V K  R        +    V +  ++   L+H NI+++
Sbjct: 13  EIIGIGGFGKVYRAFWIGDEVAV-KAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIAL 71

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
           R  C  +  L LV ++   G L+ +L G R      +  +  +  A   A+G+ +LH   
Sbjct: 72  RGVCLKEPNLCLVMEFARGGPLNRVLSGKR------IPPDILVNWAVQIARGMNYLHDEA 125

Query: 453 KAHLFHGHLSSSNIVVDQLGNAC--------ISDIGVHQLFH---------TPFFINDAY 495
              + H  L SSNI++ Q             I+D G+ + +H                A+
Sbjct: 126 IVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGAY-----AW 180

Query: 496 NAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQDE 554
            APE+     + +S     +  DV+S+GV+L E+LTG++  +G   L +   V M     
Sbjct: 181 MAPEVI--RASMFS-----KGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKL-- 231

Query: 555 SAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
                    L +     E    L++    C  P P  RP+ + +   +  I
Sbjct: 232 --------ALPIPSTCPEPFAKLME---DCWNPDPHSRPSFTNILDQLTTI 271

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  125 bits (316), Expect = 2e-32
 Identities = 63/294 (21%), Positives = 119/294 (40%), Gaps = 58/294 (19%)

Query: 339 ELLGKGCVGATYKVVLDG-GDVVVVKRIRERKK-------------KREVDEWLRVIGGL 384
           + +GKG  G  +K  L     VV +K +                  +REV     ++  L
Sbjct: 25  KQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREV----FIMSNL 80

Query: 385 RHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKG 444
            H NIV +       +   +V +++P G L+  L     P    + W+ +L+L  D A G
Sbjct: 81  NHPNIVKLYGLM--HNPPRMVMEFVPCGDLYHRLLDKAHP----IKWSVKLRLMLDIALG 134

Query: 445 LAFLHGYNKAHLFHGHLSSSNIVVDQLGNAC-----ISDIGVHQLFH--------TPFFI 491
           + ++   N   + H  L S NI +  L         ++D G+ Q                
Sbjct: 135 IEYMQNQNPPIV-HRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLGNF--- 190

Query: 492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMG 551
              + APE       +Y+++      D YSF ++L  ILTG+    +   G +K++ M+ 
Sbjct: 191 --QWMAPETIGAEEESYTEK-----ADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIR 243

Query: 552 QDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
           ++            + ++    +R +++   LC +  PK RP+ S + + + ++
Sbjct: 244 EE-------GLRPTIPEDCPPRLRNVIE---LCWSGDPKKRPHFSYIVKELSEL 287

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  120 bits (302), Expect = 2e-30
 Identities = 65/290 (22%), Positives = 114/290 (39%), Gaps = 56/290 (19%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKK--------KREVDEWLRVIGGLRHSNIV 390
           + +G G  G  YK    G   V VK +             K EV     V+   RH NI+
Sbjct: 30  QRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEV----GVLRKTRHVNIL 83

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
               Y     +L +V  +    SL+  LH S        +  K + +A  +A+G+ +LH 
Sbjct: 84  LFMGYST-APQLAIVTQWCEGSSLYHHLHASETK----FEMKKLIDIARQTARGMDYLHA 138

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFIND--------AYNAPE-LK 501
            +   + H  L S+NI + +     I D G+          +          + APE ++
Sbjct: 139 KS---IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIR 195

Query: 502 FNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFD 561
             ++N YS +      DVY+FG+VL E++TG++           +  +  +D+    V  
Sbjct: 196 MQDSNPYSFQ-----SDVYAFGIVLYELMTGQLP----------YSNINNRDQIIEMV-G 239

Query: 562 FELIMDKEME------EEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
              +     +      + M+ L+     CL     +RP+   +   IE++
Sbjct: 240 RGSLSPDLSKVRSNCPKRMKRLMA---ECLKKKRDERPSFPRILAEIEEL 286

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  120 bits (303), Expect = 3e-30
 Identities = 65/298 (21%), Positives = 113/298 (37%), Gaps = 58/298 (19%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRAY 395
           E+LGKGC G   KV       V+V +   R  +     +L+   V+  L H N++     
Sbjct: 16  EVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGV 75

Query: 396 CNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAH 455
                 L  + +Y+  G+L  ++            W++R+  A D A G+A+LH  N   
Sbjct: 76  LYKDKRLNFITEYIKGGTLRGIIKSMDS----QYPWSQRVSFAKDIASGMAYLHSMN--- 128

Query: 456 LFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN------------------- 496
           + H  L+S N +V +  N  ++D G+ +L        +                      
Sbjct: 129 IIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYW 188

Query: 497 -APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDES 555
            APE+   N  +Y      ++ DV+SFG+VL EI+    A  D          +      
Sbjct: 189 MAPEMI--NGRSYD-----EKVDVFSFGIVLCEIIGRVNADPDY---------LPRTM-- 230

Query: 556 AWEVFDFELIMDKEMEEEM-----RALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK 608
                DF L +   ++         +   + + C    P+ RP+   +   +E +R  
Sbjct: 231 -----DFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMH 283

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  118 bits (297), Expect = 2e-29
 Identities = 59/288 (20%), Positives = 105/288 (36%), Gaps = 47/288 (16%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKK--------KREVDEWLRVIGGLRHSNIV 390
           EL+GKG  G  Y     G   V ++ I   +         KREV          RH N+V
Sbjct: 39  ELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREV----MAYRQTRHENVV 92

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
                C     L ++       +L+S++  ++      +D NK  ++A +  KG+ +LH 
Sbjct: 93  LFMGACMSPPHLAIITSLCKGRTLYSVVRDAKI----VLDVNKTRQIAQEIVKGMGYLHA 148

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFIND-----------AYNAPE 499
                + H  L S N+  D  G   I+D G+  +                     + APE
Sbjct: 149 KG---ILHKDLKSKNVFYDN-GKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPE 204

Query: 500 LKFNNNNNYSQRK--FWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAW 557
           +    + +  + K  F +  DV++ G +  E+   +          + W    G      
Sbjct: 205 IIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQMGTGMK---- 260

Query: 558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
                  +    M +E+  +L     C A   ++RP  + +  M+E +
Sbjct: 261 -----PNLSQIGMGKEISDILL---FCWAFEQEERPTFTKLMDMLEKL 300

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 89.3 bits (222), Expect = 8e-20
 Identities = 59/276 (21%), Positives = 106/276 (38%), Gaps = 53/276 (19%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR----VIGGLRHSNIV--- 390
             +G+G     YK +  +    V    +++RK  +   +  +    ++ GL+H NIV   
Sbjct: 32  IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFY 91

Query: 391 -SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH 449
            S  +   GK  + LV + +  G+L + L   +    M +   +         KGL FLH
Sbjct: 92  DSWESTVKGKKCIVLVTELMTSGTLKTYL---KRFKVMKIKVLRSW--CRQILKGLQFLH 146

Query: 450 GYNKAHLFHGHLSSSNIVVD-QLGNACISDIGVHQLFH---------TPFFINDAYNAPE 499
                 + H  L   NI +    G+  I D+G+  L           TP F+     APE
Sbjct: 147 TRTPPII-HRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFM-----APE 200

Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM--AKGDGELGIVKWVQMMGQDESAW 557
           +       Y +       DVY+FG+ +LE+ T +   ++      I + V    +  S  
Sbjct: 201 MY---EEKYDES-----VDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFD 252

Query: 558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRP 593
           +V             E++ +++    C+     +R 
Sbjct: 253 KVAI----------PEVKEIIE---GCIRQNKDERY 275

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 90.8 bits (226), Expect = 3e-19
 Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 18/156 (11%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLYLSHNRFT 127
           L  LD+          E+  +L  L++L+L++N LS  +    +   +L  L+L  N   
Sbjct: 51  LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSV--NSS 185
               +     ++L  +DLSHN       +    +L NL  L L +N+            +
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169

Query: 186 SRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
           + S+    +S+NQ+    P          F     L
Sbjct: 170 NSSLKKLELSSNQIKEFSP--------GCFHAIGRL 197

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 89.3 bits (222), Expect = 1e-18
 Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 12/149 (8%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPH-----LKHLYLSH 123
           LE L++         + + + L  L+ LSL N+  S   L   ++       L  L L+ 
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390

Query: 124 NRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVN 183
           N+ +       S L HL  +DL  N    E+   E   L N+  + L  N++     +  
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

Query: 184 SSSRSILDFNVSNNQLSGQIPAWMSPFGG 212
           +   S+    +    L   + +  SPF  
Sbjct: 451 ALVPSLQRLMLRRVALKN-VDSSPSPFQP 478

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.1 bits (211), Expect = 3e-17
 Identities = 32/163 (19%), Positives = 55/163 (33%), Gaps = 24/163 (14%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSW---PHLKHLYLSHNR 125
           + ++ L+            + +  L+ L L+   L + + + S +    +L  L LS+N 
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491

Query: 126 FTGTFPSGVSSLRHLRRVDLSHN-------AYEGEIPMTELTRLPNLLTLRLEDNRFTGT 178
                   +  L  L  +DL HN             P+  L  L +L  L LE N F   
Sbjct: 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551

Query: 179 LYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
              V      +   ++  N L+            S F    +L
Sbjct: 552 PVEVFKDLFELKIIDLGLNNLNTLPA--------SVFNNQVSL 586

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.4 bits (204), Expect = 1e-16
 Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 13/152 (8%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLYLSHNRFT 127
           L +L L              +   L  L L +N LSS+ L       +L+ L LS+N+  
Sbjct: 99  LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158

Query: 128 GTFPS--GVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTL---YSV 182
                   + +   L++++LS N  +   P      +  L  L L + +   +L     +
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217

Query: 183 NSSSRSILDFNVSNNQLSGQIPAWMSPFGGSS 214
             ++ SI + ++SN+QLS            ++
Sbjct: 218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.0 bits (198), Expect = 9e-16
 Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 13/149 (8%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS---SNLNLSSWPHLKHLYLSHNR 125
           L  LDL+             +L  L+ L L NN + +     L++ +   LK L LS N+
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 126 FTGTFPSGVSSLRHLRRVDLSHNAYEGEIP--MTELTRLPNLLTLRLEDNRFTGTLYSV- 182
                P    ++  L  + L++      +   +       ++  L L +++ + T  +  
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

Query: 183 -NSSSRSILDFNVSNNQLSGQIPAWMSPF 210
                 ++   ++S N L+       +  
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWL 271

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 79.7 bits (197), Expect = 1e-15
 Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 10/140 (7%)

Query: 79  DLTGPAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFT--------GT 129
           ++         L  L +L L NN +++ ++  L     L+ L L HN           G 
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 130 FPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSI 189
               +  L HL  ++L  N ++          L  L  + L  N       SV ++  S+
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEV-FKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586

Query: 190 LDFNVSNNQLSGQIPAWMSP 209
              N+  N ++        P
Sbjct: 587 KSLNLQKNLITSVEKKVFGP 606

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.9 bits (195), Expect = 2e-15
 Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 1/134 (0%)

Query: 71  IKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLYLSHNRFTGT 129
           +  + +  +  GP   L  L+ L +L+L++N      +        LK + L  N     
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575

Query: 130 FPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSI 189
             S  ++   L+ ++L  N               NL  L +  N F  T  S+      I
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635

Query: 190 LDFNVSNNQLSGQI 203
            + + +  +LS   
Sbjct: 636 NETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.8 bits (187), Expect = 2e-14
 Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 17/153 (11%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTG 128
            E  D +       P ++ + +T L L    N L      N + +  L  L +  N  + 
Sbjct: 6   HEVADCSHLKLTQVPDDLPTNITVLNLTH--NQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 129 TFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRS 188
             P     L  L+ ++L HN     +         NL  L L  N       +     ++
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 189 ILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
           ++  ++S+N LS             +    +NL
Sbjct: 123 LITLDLSHNGLSSTKL--------GTQVQLENL 147

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.7 bits (184), Expect = 4e-14
 Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 17/147 (11%)

Query: 75  LEDLDLTG------PAEVLS--RLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLYLSHNR 125
           + +L L+               + T L +L L  N L+    +  +  P L++ +L +N 
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

Query: 126 FTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTR--------LPNLLTLRLEDNRFTG 177
               F   +  L ++R ++L  +  +  I +  L +        L  L  L +EDN   G
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343

Query: 178 TLYSVNSSSRSILDFNVSNNQLSGQIP 204
              ++ +   ++   ++SN+  S +  
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTL 370

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 90.5 bits (225), Expect = 4e-19
 Identities = 33/146 (22%), Positives = 54/146 (36%), Gaps = 11/146 (7%)

Query: 75  LEDLDLTG--------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRF 126
           LE LDL+          ++     T L+ L L  N + + + N      L+HL   H+  
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408

Query: 127 TGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVN-S 184
                  V  SLR+L  +D+SH              L +L  L++  N F         +
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 185 SSRSILDFNVSNNQLSGQIPAWMSPF 210
             R++   ++S  QL    P   +  
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSL 493

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 87.0 bits (216), Expect = 5e-18
 Identities = 34/172 (19%), Positives = 54/172 (31%), Gaps = 20/172 (11%)

Query: 75  LEDLDLTG-------PAEVLSRLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLYLSHNRF 126
           LE LD             V   L  L  L + +     +     +    L+ L ++ N F
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 127 TGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSS 185
              F   + + LR+L  +DLS    E   P      L +L  L +  N F          
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMSHNNFFSLDTFPYKC 516

Query: 186 SRSILDFNVSNNQLSGQIPAWMSPFGGS----SFAGNKNLCGRPLPSDCSNR 233
             S+   + S N +       +  F  S    +   N   C       C ++
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC------TCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 86.2 bits (214), Expect = 8e-18
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 15/154 (9%)

Query: 75  LEDLDL-----TGPAEVLSRLTQLRLLSLKNNLLSSSNLN--LSSWPHLKHLYLSHNRFT 127
           L+ LDL        +     L QL  L  +++ L   +      S  +L +L +SH    
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSR 187
             F    + L  L  + ++ N+++        T L NL  L L   +      +  +S  
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 188 SILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
           S+   N+S+N                 +    +L
Sbjct: 495 SLQVLNMSHNNFFSLDT--------FPYKCLNSL 520

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.5 bits (212), Expect = 1e-17
 Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 11/141 (7%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLYLSHNRFT 127
           L+ LDL+              L+ L  L L  N + S  L   S    L+ L        
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTG----TLYSVN 183
                 +  L+ L+ ++++HN  +        + L NL  L L  N+        L  ++
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 184 SSSRSILDFNVSNNQLSGQIP 204
                 L  ++S N ++   P
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQP 194

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.8 bits (200), Expect = 4e-16
 Identities = 30/153 (19%), Positives = 44/153 (28%), Gaps = 12/153 (7%)

Query: 72  KLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSW---PHLKHLYLSHNRFTG 128
           +L                L  L  L L  N LS       S      LK+L LS N    
Sbjct: 329 RLTFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI- 386

Query: 129 TFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRS 188
           T  S    L  L  +D  H+  +     +    L NL+ L +           + +   S
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 189 ILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
           +    ++ N                 F   +NL
Sbjct: 447 LEVLKMAGNSFQENFLP-------DIFTELRNL 472

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.5 bits (194), Expect = 2e-15
 Identities = 29/144 (20%), Positives = 44/144 (30%), Gaps = 10/144 (6%)

Query: 75  LEDLDLTG-------PAEVLSRLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLYLSHNRF 126
           LE L + G         ++ + L  L  L L    L   +    +S   L+ L +SHN F
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506

Query: 127 TGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSV--NS 184
                     L  L+ +D S N               +L  L L  N F  T        
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ 566

Query: 185 SSRSILDFNVSNNQLSGQIPAWMS 208
             +      V   ++    P+   
Sbjct: 567 WIKDQRQLLVEVERMECATPSDKQ 590

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.5 bits (186), Expect = 2e-14
 Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 21/171 (12%)

Query: 52  DPCFDSWRGVTCNPSTHRVIKLVLEDLDLTG-PAEVLSRLTQLRLLSLKNNLLSSSNLNL 110
           +PC +    +T              +L+    P  +      L L    N L    + + 
Sbjct: 1   EPCVEVVPNITYQ----------CMELNFYKIPDNLPFSTKNLDLSF--NPLRHLGSYSF 48

Query: 111 SSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRL 170
            S+P L+ L LS             SL HL  + L+ N  +        + L +L  L  
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVA 107

Query: 171 EDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
            +              +++ + NV++N +               F+   NL
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKL-------PEYFSNLTNL 151

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.0 bits (164), Expect = 9e-12
 Identities = 37/236 (15%), Positives = 61/236 (25%), Gaps = 32/236 (13%)

Query: 9   FSFFCLFSLCLSNSPYSDISTLLSFKASVTGSSDSLS-SWVNSTDPCFDSWRGVTCNPST 67
           F    L  L L N+  S        +         L      +        +        
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 68  HRVIKLVLEDLDLTG--PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNR 125
             + +  L  LD       ++ + LT +   SL +  +     + S     +HL L + +
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCK 315

Query: 126 FT-------------------GTFPSGVSSLRHLRRVDLSHNA-YEGEIPMTELTRLPNL 165
           F                    G        L  L  +DLS N                +L
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 166 LTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
             L L  N    T+ S       +   +  ++ L             S F   +NL
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE-------FSVFLSLRNL 423

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.7 bits (158), Expect = 5e-11
 Identities = 26/149 (17%), Positives = 44/149 (29%), Gaps = 19/149 (12%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRL----LSLKNNLLSSSNLNLSSWPHLKHLYLSHN 124
           LE LDL+           L  L Q+ L    L L  N ++           L  L L +N
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210

Query: 125 RFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTR--LPNLLTLRLEDNRFTGTLYS 181
             +          L  L    L    +  E  + +  +  L  L  L +E+ R     Y 
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 182 VNSSSRSILDF------NVSNNQLSGQIP 204
           ++               ++ +  +     
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 24/164 (14%), Positives = 48/164 (29%), Gaps = 12/164 (7%)

Query: 67  THRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLN--LSSWPHLKHLYLSHN 124
               + L L    +        +  +L  L+L+NN  S + +   +     L+   L   
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 125 RFTGTF------PSGVSSLRHLR--RVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT 176
            F           S +  L +L      L++  Y  +  +     L N+ +  L      
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 177 GTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKN 220
                  +     L+  + N +        +      +F  NK 
Sbjct: 296 RVKDFSYNFGWQHLE--LVNCKFGQFPTLKLKSLKRLTFTSNKG 337

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 87.7 bits (218), Expect = 1e-18
 Identities = 59/292 (20%), Positives = 110/292 (37%), Gaps = 58/292 (19%)

Query: 339 ELLGKGCVGATYKVVLDGGDV-VVVKRIRERKKKREVDEWL---RVIGGLRHSNIVSIRA 394
           E +G+G  G  +   L   +  V VK  RE        ++L   R++    H NIV +  
Sbjct: 120 EQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIG 179

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA 454
            C  K  +++V + +  G   + L          +     L++  D+A G+ +L      
Sbjct: 180 VCTQKQPIYIVMELVQGGDFLTFLRTEGA----RLRVKTLLQMVGDAAAGMEYLE---SK 232

Query: 455 HLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN-------------APE-L 500
              H  L++ N +V +     ISD G+     +    +  Y              APE L
Sbjct: 233 CCIHRDLAARNCLVTEKNVLKISDFGM-----SREEADGVYAASGGLRQVPVKWTAPEAL 287

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVF 560
            +         ++    DV+SFG++L E  +         LG   +  +  Q     +  
Sbjct: 288 NYG--------RYSSESDVWSFGILLWETFS---------LGASPYPNLSNQ-----QTR 325

Query: 561 DFELIMDKE-MEEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK 608
           +F  +     +        A+ ++   C A  P  RP+ S +++ ++ IR +
Sbjct: 326 EF--VEKGGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 84.3 bits (209), Expect = 6e-18
 Identities = 66/301 (21%), Positives = 112/301 (37%), Gaps = 57/301 (18%)

Query: 339 ELLGKGCVG----ATYKVVLDGGDVVV-VKRIRERKKKREVDEWLR---VIGGLRHSNIV 390
             LG+G  G      Y    DG   +V VK ++     +    W +   ++  L H +I+
Sbjct: 37  RDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHII 96

Query: 391 SIRAYC--NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFL 448
             +  C   G   L LV +Y+P GSL   L          +   + L  A    +G+A+L
Sbjct: 97  KYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHS------IGLAQLLLFAQQICEGMAYL 150

Query: 449 HGYNKAHLFHGHLSSSNIVVDQLGNAC-ISDIGVHQLFHTPFFINDAYN----------- 496
           H     H  H  L++ N+++D       I D G+ +        ++ Y            
Sbjct: 151 H---AQHYIHRDLAARNVLLDN-DRLVKIGDFGLAKAVPEG---HEYYRVREDGDSPVFW 203

Query: 497 -APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDE 554
            APE LK          KF+   DV+SFGV L E+LT   +        ++ + +     
Sbjct: 204 YAPECLKE--------YKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQM 255

Query: 555 SAWEVFDFELIMDKE-ME------EEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT 607
           +   +   EL+   E +        E+  L+     C       RP    +  +++ +  
Sbjct: 256 TVLRL--TELLERGERLPRPDKCPAEVYHLM---KNCWETEASFRPTFENLIPILKTVHE 310

Query: 608 K 608
           K
Sbjct: 311 K 311

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 83.9 bits (208), Expect = 7e-18
 Identities = 63/298 (21%), Positives = 110/298 (36%), Gaps = 55/298 (18%)

Query: 339 ELLGKGCVG----ATYKVVLDGGDVVV-VKRIRERKKKREVDEWLR---VIGGLRHSNIV 390
             LG+G  G      Y    D     V VK ++       + +  +   ++  L H NIV
Sbjct: 27  RDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIV 86

Query: 391 SIRAYC--NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFL 448
             +  C  +G + + L+ ++LP GSL   L  ++      ++  ++LK A    KG+ +L
Sbjct: 87  KYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNK----INLKQQLKYAVQICKGMDYL 142

Query: 449 HGYNKAHLFHGHLSSSNIVVDQLGNAC-ISDIGVHQLFHTPFFINDAYN----------- 496
                    H  L++ N++V+   +   I D G+ +   T     + Y            
Sbjct: 143 G---SRQYVHRDLAARNVLVES-EHQVKIGDFGLTKAIETD---KEYYTVKDDRDSPVFW 195

Query: 497 -APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDE 554
            APE L           KF+   DV+SFGV L E+LT      D +   +     M    
Sbjct: 196 YAPECLMQ--------SKFYIASDVWSFGVTLHELLT----YCDSDSSPMALFLKMIGPT 243

Query: 555 ----SAWEVFDFELIMDKEMEEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
               +   + +  L   K +         + Q+   C    P +R +   +    E +
Sbjct: 244 HGQMTVTRLVNT-LKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEAL 300

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 74/307 (24%), Positives = 123/307 (40%), Gaps = 67/307 (21%)

Query: 339 ELLGKGCVG----ATYKVVLDGGDVVV-VKRIRERKKKREVDEWLR---VIGGLRHSNIV 390
           + LGKG  G      Y  + D    VV VK+++   ++  + ++ R   ++  L+H NIV
Sbjct: 47  QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEE-HLRDFEREIEILKSLQHDNIV 105

Query: 391 SIRAYC--NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFL 448
             +  C   G+  L L+ +YLP+GSL   L   +      +D  K L+  S   KG+ +L
Sbjct: 106 KYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER----IDHIKLLQYTSQICKGMEYL 161

Query: 449 HGYNKAHLFHGHLSSSNIVVDQLGNAC-ISDIGVHQLFHTPFFINDAYN----------- 496
                    H  L++ NI+V+   N   I D G+ ++        + Y            
Sbjct: 162 G---TKRYIHRDLATRNILVEN-ENRVKIGDFGLTKVLPQD---KEYYKVKEPGESPIFW 214

Query: 497 -APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT------GKMAKGDGELGIVKWVQ 548
            APE L           KF    DV+SFGVVL E+ T         A+    +G  K  Q
Sbjct: 215 YAPESLTE--------SKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQ 266

Query: 549 MMGQDESAWEVFDFELIMDKE-ME------EEMRALLQVALLCLAPLPKDRPNMSIVHRM 601
           M+        +   EL+ +   +       +E+  ++     C       RP+   +   
Sbjct: 267 MIVF-----HL--IELLKNNGRLPRPDGCPDEIYMIM---TECWNNNVNQRPSFRDLALR 316

Query: 602 IEDIRTK 608
           ++ IR +
Sbjct: 317 VDQIRDQ 323

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 73/307 (23%), Positives = 122/307 (39%), Gaps = 67/307 (21%)

Query: 339 ELLGKGCVG----ATYKVVLDGGDVVV-VKRIRERKKKREVDEWLR---VIGGLRHSNIV 390
           + LGKG  G      Y  + D    VV VK+++   ++  + ++ R   ++  L+H NIV
Sbjct: 16  QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEE-HLRDFEREIEILKSLQHDNIV 74

Query: 391 SIRAYC--NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFL 448
             +  C   G+  L L+ +YLP+GSL   L   +      +D  K L+  S   KG+ +L
Sbjct: 75  KYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKER----IDHIKLLQYTSQICKGMEYL 130

Query: 449 HGYNKAHLFHGHLSSSNIVVDQLGNAC-ISDIGVHQLFHTPFFINDAYN----------- 496
                    H  L++ NI+V+   N   I D G+ ++        + +            
Sbjct: 131 G---TKRYIHRDLATRNILVEN-ENRVKIGDFGLTKVLPQD---KEFFKVKEPGESPIFW 183

Query: 497 -APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT------GKMAKGDGELGIVKWVQ 548
            APE L           KF    DV+SFGVVL E+ T         A+    +G  K  Q
Sbjct: 184 YAPESLTE--------SKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQ 235

Query: 549 MMGQDESAWEVFDFELIMDKE-ME------EEMRALLQVALLCLAPLPKDRPNMSIVHRM 601
           M+        +   EL+ +   +       +E+  ++     C       RP+   +   
Sbjct: 236 MIVF-----HL--IELLKNNGRLPRPDGCPDEIYMIM---TECWNNNVNQRPSFRDLALR 285

Query: 602 IEDIRTK 608
           ++ IR  
Sbjct: 286 VDQIRDN 292

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 84.3 bits (209), Expect = 3e-17
 Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 14/148 (9%)

Query: 75  LEDLDL------TGPAEV-LSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFT 127
           ++ + +      T P E  L ++ +L +L    N L        S   L  L L++N+ T
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT 366

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTG-------TLY 180
               +       +  +  +HN  +    + +   +  +  +    N            L 
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 181 SVNSSSRSILDFNVSNNQLSGQIPAWMS 208
                  ++   N+SNNQ+S       S
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFS 454

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 83.9 bits (208), Expect = 5e-17
 Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 16/157 (10%)

Query: 75  LEDLDLTGPAEVLSRLTQLRLLSLKNNLLSS--SNLNLSSWPHLKHLYLSHNRFTGTFPS 132
           +    L    E       L  + L+ N L+    +   ++ P+L  + LS+N F+  FP+
Sbjct: 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPT 530

Query: 133 GVSSLRHLRRVDLSHNAY------EGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSS 186
              +   L+   + +           E P   +T  P+L  L++  N            +
Sbjct: 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWP-EGITLCPSLTQLQIGSNDIRKV---NEKIT 586

Query: 187 RSILDFNVSNNQLSGQIPAWMSPFGGSS---FAGNKN 220
            +I   ++ +N       +++ P+  +       +K 
Sbjct: 587 PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.5 bits (194), Expect = 2e-15
 Identities = 19/153 (12%), Positives = 47/153 (30%), Gaps = 23/153 (15%)

Query: 75  LEDLDLTG-------PAEVLSRLTQLRLLSLKNNLLSSSNLN--------LSSWPHLKHL 119
           +E+L                  ++ +  +    N + S +               ++  +
Sbjct: 379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

Query: 120 YLSHNRFTGTFPSGVSSLRHLRRVDLSHN------AYEGEIPMTELTRLPNLLTLRLEDN 173
            LS+N+ +       S+   L  ++L  N          +           L ++ L  N
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498

Query: 174 RFTGTLYSVNSSS-RSILDFNVSNNQLSGQIPA 205
           + T       +++   ++  ++S N  S   P 
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPT 530

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.8 bits (192), Expect = 4e-15
 Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 35/149 (23%)

Query: 75  LEDLDL-----TG-PAEVLSRLTQLRLLSLKNNLLSS--------SNLNLSSWPHLKHLY 120
           +  ++L     +  P E+ S  + L  ++L  N+L+          N N  +   L  + 
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494

Query: 121 LSHNRFTGTFPS-GVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTL 179
           L  N+ T        ++L +L  +DLS+N++    P T+      L    + + R     
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FP-TQPLNSSTLKGFGIRNQR----- 547

Query: 180 YSVNSSSRSILDFNVSNNQLSGQIPAWMS 208
                        +   N+   + P  ++
Sbjct: 548 -------------DAQGNRTLREWPEGIT 563

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 16/143 (11%), Positives = 46/143 (32%), Gaps = 14/143 (9%)

Query: 75  LEDLDLTG---PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFP 131
           L    +      AE +    +            + +L   +   L  + + +       P
Sbjct: 208 LRQFYMGNSPFVAENICEAWENENSEY-AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP 266

Query: 132 SGVSSLRHLRRVDLSHN--------AYEGEIPMTELTRLPNLLTLRLEDNRF-TGTLYSV 182
           + + +L  ++ ++++ N          + +    +      +  + +  N   T  + + 
Sbjct: 267 TFLKALPEMQLINVACNRGISGEQLKDDWQAL-ADAPVGEKIQIIYIGYNNLKTFPVETS 325

Query: 183 NSSSRSILDFNVSNNQLSGQIPA 205
               + +       NQL G++PA
Sbjct: 326 LQKMKKLGMLECLYNQLEGKLPA 348

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 71.6 bits (176), Expect = 4e-13
 Identities = 23/171 (13%), Positives = 57/171 (33%), Gaps = 28/171 (16%)

Query: 40  SSDSLSSWVNSTDPC-FDSWRGVTCNPSTHRVIKLVLEDLDLTG--PAEVLSRLTQLRLL 96
            +   ++W  + +   + +  GV+ N +  RV  L LE    +G  P   + +LT+L +L
Sbjct: 53  GTQPGANWNFNKELDMWGAQPGVSLNSNG-RVTGLSLEGFGASGRVPDA-IGQLTELEVL 110

Query: 97  SLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPM 156
           +L ++    +                        P G+S+     +       Y+     
Sbjct: 111 ALGSHGEKVNERL-------------------FGPKGISANMSDEQKQKMRMHYQKTFV- 150

Query: 157 TELTRL--PNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPA 205
               R    +L+   +  +    ++   +  +         +N ++  +  
Sbjct: 151 DYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK 200

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.1 bits (172), Expect = 9e-13
 Identities = 22/171 (12%), Positives = 52/171 (30%), Gaps = 37/171 (21%)

Query: 73  LVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWP-------HLKHLYLSHNR 125
             L    +    +  S + +   ++LK+  +   + N++           L+  Y+ ++ 
Sbjct: 159 SDLIKDCINSDPQQKS-IKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP 217

Query: 126 FTG-------------------TFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLL 166
           F                     T      +L+ L  V++ +     ++P T L  LP + 
Sbjct: 218 FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQ 276

Query: 167 TLRLEDNRFTGTLYSVNS--------SSRSILDFNVSNNQL-SGQIPAWMS 208
            + +  NR        +             I    +  N L +  +   + 
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 21/144 (14%), Positives = 43/144 (29%), Gaps = 27/144 (18%)

Query: 75  LEDLDLTG------PAEV-LSRLTQLRLLSLKNNLLSS-----SNL-NLSSWPHLKHLYL 121
           L  +DL          +   + L  L  + L  N  S       N   L  +        
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA 549

Query: 122 SHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLP-----NLLTLRLEDNRFT 176
             NR    +P G++    L ++ +  N         ++ ++      N+  L ++DN   
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSN---------DIRKVNEKITPNISVLDIKDNPNI 600

Query: 177 GTLYSVNSSSRSILDFNVSNNQLS 200
               S          + +  ++  
Sbjct: 601 SIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 19/185 (10%), Positives = 48/185 (25%), Gaps = 29/185 (15%)

Query: 25  SDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPA 84
           + +   LS  A       +L    ++ +    S +G    P                   
Sbjct: 16  AIVPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQP------------------- 56

Query: 85  EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVD 144
              +     + L +       S   L+S   +  L L     +G  P  +  L  L  + 
Sbjct: 57  --GANWNFNKELDMWGAQPGVS---LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLA 111

Query: 145 LSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSV-----NSSSRSILDFNVSNNQL 199
           L  +  +    +     +   ++   +         +            ++   ++++  
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171

Query: 200 SGQIP 204
              I 
Sbjct: 172 QKSIK 176

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.3 bits (209), Expect = 4e-17
 Identities = 30/158 (18%), Positives = 49/158 (31%), Gaps = 16/158 (10%)

Query: 72  KLVLEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNR 125
           ++ +E ++L         +      + L+ L L    LS     L     LK L LS N+
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK 312

Query: 126 FTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSS 185
           F        S+   L  + +  N    E+    L  L NL  L L  +    +       
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 186 S--RSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
                +   N+S N+               +F     L
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKT--------EAFKECPQL 402

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.0 bits (203), Expect = 2e-16
 Identities = 25/148 (16%), Positives = 45/148 (30%), Gaps = 10/148 (6%)

Query: 75  LEDLDLTG-------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSW---PHLKHLYLSHN 124
           L  L + G           L  L  LR L L ++ + +S+          HL+ L LS+N
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

Query: 125 RFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNS 184
                          L  +DL+    + +   +    L  L  L L  +    +   +  
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446

Query: 185 SSRSILDFNVSNNQLSGQIPAWMSPFGG 212
              ++   N+  N          +    
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQT 474

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.8 bits (200), Expect = 4e-16
 Identities = 25/148 (16%), Positives = 44/148 (29%), Gaps = 8/148 (5%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLYLSHNRFT 127
            E L+ +            SRL  L  L L    +   + +   S   L  L L+ N   
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSR 187
               + +S  + L+ +          I    L     L +L L  N  +         + 
Sbjct: 95  FMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153

Query: 188 SILDFNVSNNQLSGQIPAWMSPFGGSSF 215
            +   +  NN +       MS    ++ 
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATN 181

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.8 bits (187), Expect = 2e-14
 Identities = 41/175 (23%), Positives = 62/175 (35%), Gaps = 26/175 (14%)

Query: 75  LEDLDLTG-------PAEVLSRLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLYLSHNRF 126
           LE LDL                L  L++L+L ++LL  S+       P L+HL L  N F
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461

Query: 127 TGTF---PSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVN 183
                   + + +L  L  + LS       I     T L  +  + L  NR T +     
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLS-SIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520

Query: 184 SSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLC-----GRPLPSDCSNR 233
           S  +  +  N+++N +S  +P        S                PL   CSN 
Sbjct: 521 SHLKG-IYLNLASNHISIILP--------SLLPILSQQRTINLRQNPLDCTCSNI 566

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 29/139 (20%), Positives = 45/139 (32%), Gaps = 11/139 (7%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFT 127
           L+ L LT           LS    L+ L      +SS   + L +   L+ LYL  N  +
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS 142

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNL--LTLRLEDNRFTGTLYSVNSS 185
                       L+ +D  +NA    +   +++ L     L+L L  N     +      
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFD 200

Query: 186 SRSILDFNVSNNQLSGQIP 204
           S      N    Q    I 
Sbjct: 201 SAVFQSLNFGGTQNLLVIF 219

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 21/135 (15%), Positives = 44/135 (32%), Gaps = 9/135 (6%)

Query: 87  LSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS 146
           +  L       + +  +S +         ++ + L  + F     +       L+ +DL+
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 147 HNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAW 206
                 E+P + L  L  L  L L  N+F        S+  S+   ++  N    ++   
Sbjct: 287 ATHLS-ELP-SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT- 343

Query: 207 MSPFGGSSFAGNKNL 221
                       +NL
Sbjct: 344 ------GCLENLENL 352

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 23/127 (18%), Positives = 35/127 (27%), Gaps = 14/127 (11%)

Query: 100 NNLLSSSNLNLSSWP-----HLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEI 154
           N   +  NL L+  P       + L  S N       +  S L +L  +DL+        
Sbjct: 14  NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 155 PMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSS 214
             T       L TL L  N       +  S  +++         +S              
Sbjct: 74  EDT-FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF--------IP 124

Query: 215 FAGNKNL 221
               K L
Sbjct: 125 LHNQKTL 131

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 19/138 (13%), Positives = 34/138 (24%), Gaps = 14/138 (10%)

Query: 87  LSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLR--HLRRVD 144
            +    L     +N L+    L  S+   L              P+    L    +  ++
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260

Query: 145 LSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSR-SILDFNVSNNQLSGQI 203
           L  + +      T       L  L L     +     +   S    L    S N+     
Sbjct: 261 LQKHYFFNISSNT-FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVL--SANKFENLC 317

Query: 204 PAWMSPFGGSSFAGNKNL 221
                     S +   +L
Sbjct: 318 Q--------ISASNFPSL 327

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 10/93 (10%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLK--HLYLSHNRF 126
           LE L L+            + L  +  + L +N L+S   ++ +  HLK  +L L+ N  
Sbjct: 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS--SSIEALSHLKGIYLNLASNHI 535

Query: 127 TGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTEL 159
           +   PS +  L   R ++L  N  +        
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPLDCTCSNIYF 568

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 83.9 bits (208), Expect = 5e-17
 Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 15/154 (9%)

Query: 75  LEDLDL-----TGPAEVLSRLTQLRLLSLKNNLLSS--SNLNLSSWPHLKHLYLSHNRFT 127
           L  LDL        +     L +L+ L  +++ L          S   L +L +S+    
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSR 187
             F      L  L  + ++ N+++            NL  L L   +     + V  +  
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497

Query: 188 SILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
            +   N+S+N L             S +    +L
Sbjct: 498 RLQLLNMSHNNLLFLDS--------SHYNQLYSL 523

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.8 bits (200), Expect = 4e-16
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 11/137 (8%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLYLSHNRFT 127
           L+ LDL+         +    L  L  L L  N + S +    S    L++L     +  
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTG----TLYSVN 183
                 +  L  L++++++HN           + L NL+ + L  N         L  + 
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 184 SSSRSILDFNVSNNQLS 200
            + +  L  ++S N + 
Sbjct: 178 ENPQVNLSLDMSLNPID 194

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.5 bits (194), Expect = 2e-15
 Identities = 29/173 (16%), Positives = 49/173 (28%), Gaps = 23/173 (13%)

Query: 75  LEDLDLTG-------PAEVLSRLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLYLSHNRF 126
           L+ LD                 L +L  L +                  L  L ++ N F
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 127 TGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSS 185
                S V ++  +L  +DLS    E +I       L  L  L +  N       S  + 
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

Query: 186 SRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLC-----GRPLPSDCSNR 233
             S+   + S N++                   K+L         +   C ++
Sbjct: 520 LYSLSTLDCSFNRIETSKG--------ILQHFPKSLAFFNLTNNSVACICEHQ 564

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 76.2 bits (188), Expect = 1e-14
 Identities = 33/157 (21%), Positives = 52/157 (33%), Gaps = 19/157 (12%)

Query: 75  LEDLDLTG------PAEVLSRL--TQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRF 126
           L  LDL+            S L    LR L L  N     + N      L+HL   H+  
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTL 411

Query: 127 TGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVN-S 184
                     SL  L  +D+S+   + +        L +L TL++  N F     S   +
Sbjct: 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI-FLGLTSLNTLKMAGNSFKDNTLSNVFA 470

Query: 185 SSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
           ++ ++   ++S  QL               F     L
Sbjct: 471 NTTNLTFLDLSKCQLEQISW--------GVFDTLHRL 499

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 4e-13
 Identities = 27/157 (17%), Positives = 45/157 (28%), Gaps = 33/157 (21%)

Query: 90  LTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTG--------------------- 128
           L  L+ L+L  N  S S     + P L +L LS N  +                      
Sbjct: 327 LPFLKSLTLTMNKGSIS-FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385

Query: 129 ----TFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNS 184
                  +    L  L+ +D  H+  +     +    L  LL L +           +  
Sbjct: 386 NGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445

Query: 185 SSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
              S+    ++ N       +       + FA   NL
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLS-------NVFANTTNL 475

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.7 bits (158), Expect = 5e-11
 Identities = 30/173 (17%), Positives = 56/173 (32%), Gaps = 21/173 (12%)

Query: 50  STDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTG-PAEVLSRLTQLRLLSLKNNLLSSSNL 108
           S +PC +    +T              D  L+  P ++ S    + L    N L    + 
Sbjct: 3   SLNPCIEVVPNITYQ----------CMDQKLSKVPDDIPSSTKNIDLSF--NPLKILKSY 50

Query: 109 NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTL 168
           + S++  L+ L LS              L HL  + L+ N  +        + L +L  L
Sbjct: 51  SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENL 109

Query: 169 RLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
              + +             ++   NV++N +             + F+   NL
Sbjct: 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL-------PAYFSNLTNL 155

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 27/151 (17%), Positives = 40/151 (26%), Gaps = 23/151 (15%)

Query: 75  LEDLDLTG-------PAEVLSRLTQLRLLSLKNNLLSS------SNLNLSSWPHLKHLYL 121
           L+ L++              S LT L  + L  N + +        L  +       L +
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP-QVNLSLDM 188

Query: 122 SHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGT--L 179
           S N               L  + L  N     I  T L  L  L   RL    F     L
Sbjct: 189 SLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 180 YSVNSS------SRSILDFNVSNNQLSGQIP 204
                S        +I +F ++         
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 82.5 bits (204), Expect = 1e-16
 Identities = 64/284 (22%), Positives = 122/284 (42%), Gaps = 38/284 (13%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVV-VKRIRERKKKRE--VDEWLRVIGGLRHSNIVSIRAY 395
             LG G  G  Y+ V     + V VK ++E   + E  + E   V+  ++H N+V +   
Sbjct: 226 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKE-AAVMKEIKHPNLVQLLGV 284

Query: 396 CNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAH 455
           C  +   +++ +++ +G+L   L   R   R  V     L +A+  +  + +L    K +
Sbjct: 285 CTREPPFYIITEFMTYGNLLDYL---RECNRQEVSAVVLLYMATQISSAMEYLE---KKN 338

Query: 456 LFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE-----LKFNNNNNYSQ 510
             H +L++ N +V +     ++D G+ +L        D Y A       +K+    + + 
Sbjct: 339 FIHRNLAARNCLVGENHLVKVADFGLSRLMT-----GDTYTAHAGAKFPIKWTAPESLAY 393

Query: 511 RKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEM 570
            KF  + DV++FGV+L EI T          G+  +  +        +V++  L  D  M
Sbjct: 394 NKFSIKSDVWAFGVLLWEIAT---------YGMSPYPGIDLS-----QVYEL-LEKDYRM 438

Query: 571 EEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSI 611
           E        + ++   C    P DRP+ + +H+  E +  + SI
Sbjct: 439 ERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESSI 482

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 79.6 bits (197), Expect = 2e-16
 Identities = 71/303 (23%), Positives = 113/303 (37%), Gaps = 72/303 (23%)

Query: 339 ELLGKGCVGATYK-----VVLDGGDVVV-VKRIRERKKKREVDEWLR---VIGGLRHSNI 389
             LG+G  G  Y+     VV D  +  V +K + E    RE  E+L    V+      ++
Sbjct: 31  RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHV 90

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSR-----GPGRMPVDWNKRLKLASDSAKG 444
           V +    +      ++ + +  G L S L   R      P   P   +K +++A + A G
Sbjct: 91  VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADG 150

Query: 445 LAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN-------- 496
           +A+L   N     H  L++ N +V +     I D G+ +  +      D Y         
Sbjct: 151 MAYL---NANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYE----TDYYRKGGKGLLP 203

Query: 497 ----APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMG 551
               +PE LK           F    DV+SFGVVL EI T         L    +  +  
Sbjct: 204 VRWMSPESLKD--------GVFTTYSDVWSFGVVLWEIAT---------LAEQPYQGL-- 244

Query: 552 QDESAWEVFDFEL---IMDK------EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMI 602
              S  +V  F +   ++DK       + E MR        C    PK RP+   +   I
Sbjct: 245 ---SNEQVLRFVMEGGLLDKPDNCPDMLFELMRM-------CWQYNPKMRPSFLEIISSI 294

Query: 603 EDI 605
           ++ 
Sbjct: 295 KEE 297

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 79.7 bits (196), Expect = 4e-16
 Identities = 33/296 (11%), Positives = 66/296 (22%), Gaps = 59/296 (19%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVD-----EWLRVIGGLRHSNIVSI 392
           E L  G     + V  ++  +   +K      +    +     E       L   +    
Sbjct: 68  EPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEA 127

Query: 393 RAYCN--------------------------GKDELFLVYDYLPHGSLHSLLH--GSRGP 424
           R                                    L+        L  L         
Sbjct: 128 RDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMP-AASVDLELLFSTLDFVYV 186

Query: 425 GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIG---- 480
            R          L +   +  A L       L HGH +  N+ +   G   + D+     
Sbjct: 187 FRGDEGILALHILTAQLIRLAANLQSK---GLVHGHFTPDNLFIMPDGRLMLGDVSALWK 243

Query: 481 ---VHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKG 537
                     P      Y   E    +   ++        + +  G+ +  +    +  G
Sbjct: 244 VGTRGPASSVPVT----YAPREFLNASTATFTHA-----LNAWQLGLSIYRVWCLFLPFG 294

Query: 538 DGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRP 593
               GI    +         +   F       + + ++ L+      L    + R 
Sbjct: 295 LVTPGIKGSWKRPSLRVPGTDSLAFGS--CTPLPDFVKTLIG---RFLNFDRRRRL 345

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 79.4 bits (196), Expect = 4e-16
 Identities = 65/302 (21%), Positives = 106/302 (35%), Gaps = 66/302 (21%)

Query: 339 ELLGKGCVGATYK-----VVLDGGDVVV-VKRIRERKKKREVDEWLR---VIGGLRHSNI 389
             LG G  G  Y+     +  D   + V VK + E   +++  ++L    +I    H NI
Sbjct: 77  RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNI 136

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKR--LKLASDSAKGLAF 447
           V            F++ + +  G L S L  +R     P        L +A D A G  +
Sbjct: 137 VRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQY 196

Query: 448 LHGYNKAHLFHGHLSSSNIVVDQLGN---ACISDIGVHQLFHTPFFINDAYN-------- 496
           L    + H  H  +++ N ++   G    A I D G+ +  +        Y         
Sbjct: 197 L---EENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYR----AGYYRKGGCAMLP 249

Query: 497 ----APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMG 551
                PE              F  + D +SFGV+L EI +         LG + +     
Sbjct: 250 VKWMPPEAFME--------GIFTSKTDTWSFGVLLWEIFS---------LGYMPYPSK-- 290

Query: 552 QDESAWEVFDFELIMDKEME------EEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
              S  EV +F +     M+        +  ++     C    P+DRPN +I+   IE  
Sbjct: 291 ---SNQEVLEF-VTSGGRMDPPKNCPGPVYRIM---TQCWQHQPEDRPNFAIILERIEYC 343

Query: 606 RT 607
             
Sbjct: 344 TQ 345

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 78.5 bits (194), Expect = 5e-16
 Identities = 65/302 (21%), Positives = 106/302 (35%), Gaps = 66/302 (21%)

Query: 339 ELLGKGCVGATYK-----VVLDGGDVVV-VKRIRERKKKREVDEWLR---VIGGLRHSNI 389
             LG G  G  Y+     +  D   + V VK + E   +++  ++L    +I    H NI
Sbjct: 36  RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNI 95

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKR--LKLASDSAKGLAF 447
           V            F++ + +  G L S L  +R     P        L +A D A G  +
Sbjct: 96  VRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQY 155

Query: 448 LHGYNKAHLFHGHLSSSNIVVDQLGN---ACISDIGVHQLFHTPFFINDAYN-------- 496
           L    + H  H  +++ N ++   G    A I D G+ +  +        Y         
Sbjct: 156 L---EENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYR----ASYYRKGGCAMLP 208

Query: 497 ----APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMG 551
                PE              F  + D +SFGV+L EI +         LG + +     
Sbjct: 209 VKWMPPEAFME--------GIFTSKTDTWSFGVLLWEIFS---------LGYMPYPSK-- 249

Query: 552 QDESAWEVFDFELIMDKEME------EEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
              S  EV +F +     M+        +  ++     C    P+DRPN +I+   IE  
Sbjct: 250 ---SNQEVLEF-VTSGGRMDPPKNCPGPVYRIM---TQCWQHQPEDRPNFAIILERIEYC 302

Query: 606 RT 607
             
Sbjct: 303 TQ 304

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 77.7 bits (192), Expect = 6e-16
 Identities = 66/292 (22%), Positives = 120/292 (41%), Gaps = 54/292 (18%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVV-VKRIRERKKKRE--VDEWLRVIGGLRHSNIVSIRAY 395
             LG G  G  Y+ V     + V VK ++E   + E  + E   V+  ++H N+V +   
Sbjct: 19  HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKE-AAVMKEIKHPNLVQLLGV 77

Query: 396 CNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAH 455
           C  +   +++ +++ +G+L   L   R   R  V     L +A+  +  + +L    K +
Sbjct: 78  CTREPPFYIITEFMTYGNLLDYL---RECNRQEVSAVVLLYMATQISSAMEYL---EKKN 131

Query: 456 LFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN------------APE-LKF 502
             H  L++ N +V +     ++D G+ +L        D Y             APE L +
Sbjct: 132 FIHRDLAARNCLVGENHLVKVADFGLSRLMT-----GDTYTAHAGAKFPIKWTAPESLAY 186

Query: 503 NNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF 562
                    KF  + DV++FGV+L EI T          G+  +  +        +V++ 
Sbjct: 187 --------NKFSIKSDVWAFGVLLWEIAT---------YGMSPYPGI-----DLSQVYEL 224

Query: 563 ELIMDKEMEEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSI 611
            L  D  ME        + ++   C    P DRP+ + +H+  E +  + SI
Sbjct: 225 -LEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESSI 275

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 80.0 bits (197), Expect = 8e-16
 Identities = 40/183 (21%), Positives = 64/183 (34%), Gaps = 14/183 (7%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTG 128
           L ++DL+             ++ +L  L + NN L + NL     P LK L LSHN    
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL- 314

Query: 129 TFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRS 188
                      L  + L HN     I   +L+    L  L L  N +     S+ +  R+
Sbjct: 315 HVERNQPQFDRLENLYLDHN----SIVTLKLSTHHTLKNLTLSHNDWDCN--SLRALFRN 368

Query: 189 ILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPLPSDCSNRTVEPEQPPRSRPRSS 248
           +    V +     +I   +   G      +K    R L        VE  Q  + R  ++
Sbjct: 369 VARPAVDDADQHCKIDYQLEH-GLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSAT 427

Query: 249 RVV 251
             +
Sbjct: 428 DTI 430

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 66.9 bits (163), Expect = 9e-12
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 20/138 (14%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFT 127
           L  L L        P  +     +L  LS+ NN L    +    +   L++L LS NR T
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSR 187
                 +  +  L   ++S+N       ++ L     +  L    N     +    +   
Sbjct: 185 -HVDLSL--IPSLFHANVSYN------LLSTLAIPIAVEELDASHNSIN-VVRGPVNVEL 234

Query: 188 SILDFNVSNNQLSGQIPA 205
           +IL   + +N L+     
Sbjct: 235 TILK--LQHNNLT-DTAW 249

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.3 bits (151), Expect = 3e-10
 Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 15/133 (11%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTG 128
           +E+LD +          V   LT L+L   ++N L+ +   L ++P L  + LS+N    
Sbjct: 213 VEELDASHNSINVVRGPVNVELTILKL---QHNNLTDTA-WLLNYPGLVEVDLSYNELE- 267

Query: 129 TFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSR 187
                    ++ L R+ +S+N     + +     +P L  L L  N     +        
Sbjct: 268 KIMYHPFVKMQRLERLYISNNRLV-ALNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQFD 324

Query: 188 SILDFNVSNNQLS 200
            + +  + +N + 
Sbjct: 325 RLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.4 bits (141), Expect = 5e-09
 Identities = 18/137 (13%), Positives = 37/137 (27%), Gaps = 12/137 (8%)

Query: 87  LSRLTQLRLLSLKNNLLS-SSNLNLSSWPHLKHLYLSHNRFTGTFPSGV-SSLRHLRRVD 144
           L        + +              +  + K +   ++      P+ +  S R +  ++
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 81

Query: 145 LSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP 204
           L+    E EI          +  L +  N        V  +   +    +  N LS  +P
Sbjct: 82  LNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 139

Query: 205 AWMSPFGGSSFAGNKNL 221
                     F     L
Sbjct: 140 R-------GIFHNTPKL 149

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 74/303 (24%), Positives = 124/303 (40%), Gaps = 60/303 (19%)

Query: 339 ELLGKGCVG----ATYKVVLDGGDVVV-VKRIRERKKKREVDEWLR---VIGGLRHSNIV 390
             LGKG  G      Y  + D    +V VK+++     ++  ++ R   ++  L    IV
Sbjct: 29  SQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQ-RDFQREIQILKALHSDFIV 87

Query: 391 SIRAYC--NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFL 448
             R      G+  L LV +YLP G L   L   R      +D ++ L  +S   KG+ +L
Sbjct: 88  KYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRAR----LDASRLLLYSSQICKGMEYL 143

Query: 449 HGYNKAHLFHGHLSSSNIVVDQLGNAC-ISDIGVHQLFHTPFFINDAYN----------- 496
                    H  L++ NI+V+       I+D G+ +L        D Y            
Sbjct: 144 G---SRRCVHRDLAARNILVES-EAHVKIADFGLAKLLPLD---KDYYVVREPGQSPIFW 196

Query: 497 -APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQD 553
            APE L            F ++ DV+SFGVVL E+ T    +         ++++MMG +
Sbjct: 197 YAPESLSD--------NIFSRQSDVWSFGVVLYELFTYCDKSC----SPSAEFLRMMGCE 244

Query: 554 ESAWEVFD-FELIMDKE-ME------EEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
                +    EL+ + + +        E+  L+    LC AP P+DRP+ S +   ++ +
Sbjct: 245 RDVPALSRLLELLEEGQRLPAPPACPAEVHELM---KLCWAPSPQDRPSFSALGPQLDML 301

Query: 606 RTK 608
            + 
Sbjct: 302 WSG 304

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 75.7 bits (187), Expect = 2e-15
 Identities = 60/290 (20%), Positives = 111/290 (38%), Gaps = 56/290 (19%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRAY 395
           + +G G  G  +       D V +K IRE       ++++    V+  L H  +V +   
Sbjct: 14  QEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM--SEEDFIEEAEVMMKLSHPKLVQLYGV 71

Query: 396 CNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAH 455
           C  +  + LV +++ HG L   L   RG           L +  D  +G+A+L    +A 
Sbjct: 72  CLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAET----LLGMCLDVCEGMAYL---EEAC 124

Query: 456 LFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN------------APE-LKF 502
           + H  L++ N +V +     +SD G+ +        +D Y             +PE   F
Sbjct: 125 VIHRDLAARNCLVGENQVIKVSDFGMTRFVL-----DDQYTSSTGTKFPVKWASPEVFSF 179

Query: 503 NNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF 562
                    ++  + DV+SFGV++ E+ +          G + +           EV + 
Sbjct: 180 --------SRYSSKSDVWSFGVLMWEVFS---------EGKIPYENRSNS-----EVVED 217

Query: 563 ELIMDKEMEEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG 609
            +     + +       + Q+   C    P+DRP  S + R + +I   G
Sbjct: 218 -ISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAESG 266

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 75.3 bits (186), Expect = 3e-15
 Identities = 52/212 (24%), Positives = 101/212 (47%), Gaps = 37/212 (17%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKRE--VDEWLRVIGGLRHSNIVSIRAYC 396
           E LG G  G  +    +G   V VK +++     +  + E   ++  L+H  +V + A  
Sbjct: 19  ERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAE-ANLMKQLQHQRLVRLYAVV 77

Query: 397 NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHL 456
             ++ ++++ +Y+ +GSL   L   + P  + +  NK L +A+  A+G+AF+    + + 
Sbjct: 78  T-QEPIYIITEYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIAEGMAFI---EERNY 130

Query: 457 FHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAY------------NAPE-LKFN 503
            H  L ++NI+V    +  I+D G+ +L       ++ Y             APE + + 
Sbjct: 131 IHRDLRAANILVSDTLSCKIADFGLARLIE-----DNEYTAREGAKFPIKWTAPEAINY- 184

Query: 504 NNNNYSQRKFWQRCDVYSFGVVLLEILT-GKM 534
                    F  + DV+SFG++L EI+T G++
Sbjct: 185 -------GTFTIKSDVWSFGILLTEIVTHGRI 209

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.4 bits (193), Expect = 3e-15
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 21/151 (13%)

Query: 80  LTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRH 139
           +T  ++ + RLT+L+++   N+  +  N+ +      +     + +         S+L+ 
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVD----WEDANSDYAKQYENEELSWSNLKD 492

Query: 140 LRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSR---------SIL 190
           L  V+L +     ++P   L  LP L +L +  NR           +R          I 
Sbjct: 493 LTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 191 DFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
            F +  N L    PA       +S      L
Sbjct: 552 IFYMGYNNLEE-FPA------SASLQKMVKL 575

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.6 bits (191), Expect = 6e-15
 Identities = 20/151 (13%), Positives = 46/151 (30%), Gaps = 21/151 (13%)

Query: 75  LEDLDLTG-------PAEVLSRLTQLRLLSLKNNLLSS------SNLNLSSWPHLKHLYL 121
           +E L  +               +  +  +    N + S       +++     +   + L
Sbjct: 621 VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680

Query: 122 SHNRFTGTFPSGVSSLRHLRRVDLSHN------AYEGEIPMTELTRLPNLLTLRLEDNRF 175
           S+N          ++   +  + LS+N          +           L T+ L  N+ 
Sbjct: 681 SYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740

Query: 176 TGTLYSVNSSS-RSILDFNVSNNQLSGQIPA 205
           T       +++   + + +VS N  S   P 
Sbjct: 741 TSLSDDFRATTLPYLSNMDVSYNCFSS-FPT 770

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.2 bits (190), Expect = 8e-15
 Identities = 19/151 (12%), Positives = 47/151 (31%), Gaps = 23/151 (15%)

Query: 75  LEDLDLTG------PAEV-LSRLTQLRLLSLKNNLLSS----SNLNLSSWPHLKHLYLSH 123
           ++   +        PA   L ++ +L LL   +N +                L  L L +
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTN-----VKLTDLKLDY 604

Query: 124 NRFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSV 182
           N+     P    +    +  +  SHN  +    +     +  + ++    N+      ++
Sbjct: 605 NQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663

Query: 183 NSS-----SRSILDFNVSNNQLSGQIPAWMS 208
           + S       +     +S N++        +
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFA 694

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.1 bits (187), Expect = 2e-14
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 35/149 (23%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS--------SNLNLSSWPHLKHLY 120
              + L+       P E+ +  + +  + L NNL++S         + N  +   L  + 
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734

Query: 121 LSHNRFTGTFPS-GVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTL 179
           L  N+ T        ++L +L  +D+S+N +    P T+      L    +   R     
Sbjct: 735 LRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFP-TQPLNSSQLKAFGIRHQR----- 787

Query: 180 YSVNSSSRSILDFNVSNNQLSGQIPAWMS 208
                        +   N++  Q P  ++
Sbjct: 788 -------------DAEGNRILRQWPTGIT 803

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 22/144 (15%)

Query: 75  LEDLDLTG------PAEV-LSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSH---- 123
           L  +DL          +   + L  L  + +  N  SS      +   LK   + H    
Sbjct: 730 LTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDA 789

Query: 124 --NRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT----G 177
             NR    +P+G+++   L ++ +  N    ++   +L   P L  L + DN        
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVD-EKL--TPQLYILDIADNPNISIDVT 845

Query: 178 TLYSVNSSSRSILDFNVSNNQLSG 201
           ++     +   +L ++     + G
Sbjct: 846 SVCPYIEAGMYVLLYD-KTQDIRG 868

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.6 bits (152), Expect = 3e-10
 Identities = 20/186 (10%), Positives = 41/186 (22%), Gaps = 17/186 (9%)

Query: 25  SDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPA 84
            D   L +   ++ G +    S   +      +W              + L++       
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN------ 322

Query: 85  EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVD 144
               R+T L L              +     LK L    +  T +              +
Sbjct: 323 ---GRVTGLSLAG--FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 145 LSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT-----GTLYSVNSSSRSILDFNVSNNQL 199
              +          L     L    L  +          +   +  S          N++
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 200 SGQIPA 205
           +  I  
Sbjct: 438 TF-ISK 442

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 75.9 bits (187), Expect = 4e-15
 Identities = 59/296 (19%), Positives = 104/296 (35%), Gaps = 53/296 (17%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKK------KREVDEWLRVIGGLRHSNIVS 391
           + LG+G       V  L  G    +KRI   ++      +RE      +     H NI+ 
Sbjct: 35  QKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREA----DMHRLFNHPNILR 90

Query: 392 IRAYC----NGKDELFLVYDYLPHGSLHSLL-HGSRGPGRMPVDWNKRLKLASDSAKGLA 446
           + AYC      K E +L+  +   G+L + +         +  D  + L L     +GL 
Sbjct: 91  LVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTED--QILWLLLGICRGLE 148

Query: 447 FLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIG-VHQLFHTPFFINDA----------- 494
            +H        H  L  +NI++   G   + D+G ++Q          A           
Sbjct: 149 AIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRC 205

Query: 495 ---YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMM 550
              Y APEL     +  S     +R DV+S G VL  ++ G+       + G    + + 
Sbjct: 206 TISYRAPEL----FSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQ 261

Query: 551 GQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR 606
            Q           +         +  LL      +   P  RP++ ++   +E ++
Sbjct: 262 NQ---------LSIPQSPRHSSALWQLLNS---MMTVDPHQRPHIPLLLSQLEALQ 305

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 75.3 bits (186), Expect = 4e-15
 Identities = 56/291 (19%), Positives = 106/291 (36%), Gaps = 56/291 (19%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRAY 395
           + LG G  G        G   V +K I+E       DE++    V+  L H  +V +   
Sbjct: 30  KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM--SEDEFIEEAKVMMNLSHEKLVQLYGV 87

Query: 396 CNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAH 455
           C  +  +F++ +Y+ +G L + L   R   +        L++  D  + + +L       
Sbjct: 88  CTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQ----LLEMCKDVCEAMEYL---ESKQ 140

Query: 456 LFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN------------APE-LKF 502
             H  L++ N +V+  G   +SD G+ +        +D Y              PE L +
Sbjct: 141 FLHRDLAARNCLVNDQGVVKVSDFGLSRYVL-----DDEYTSSVGSKFPVRWSPPEVLMY 195

Query: 503 NNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF 562
                    KF  + D+++FGV++ EI +         LG + + +         E  + 
Sbjct: 196 --------SKFSSKSDIWAFGVLMWEIYS---------LGKMPYERFTNS-----ETAEH 233

Query: 563 ELIMDKEMEEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGS 610
            +     +         +  +   C      +RP   I+   I D+  + S
Sbjct: 234 -IAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDEES 283

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 75.0 bits (185), Expect = 5e-15
 Identities = 53/296 (17%), Positives = 110/296 (37%), Gaps = 60/296 (20%)

Query: 339 ELLGKGCVGATYKVVLDGGD----VVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVS 391
            ++GKG  G  Y               +K +    + ++V+ +LR   ++ GL H N+++
Sbjct: 27  RVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLA 86

Query: 392 IRAYCNGKDE-LFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
           +       +    ++  Y+ HG L   +   +    +       +      A+G+ +L  
Sbjct: 87  LIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVK----DLISFGLQVARGMEYL-- 140

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN-------------- 496
             +    H  L++ N ++D+     ++D G+ +         + Y+              
Sbjct: 141 -AEQKFVHRDLAARNCMLDESFTVKVADFGLARDILD----REYYSVQQHRHARLPVKWT 195

Query: 497 APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDES 555
           A E L+          +F  + DV+SFGV+L E+LT          G   +     +   
Sbjct: 196 ALESLQT--------YRFTTKSDVWSFGVLLWELLT---------RGAPPY-----RHID 233

Query: 556 AWEVFDFELIMDKEMEEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK 608
            +++  F L   + + +      +L QV   C    P  RP   ++   +E I + 
Sbjct: 234 PFDLTHF-LAQGRRLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSA 288

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 76.7 bits (189), Expect = 5e-15
 Identities = 61/285 (21%), Positives = 121/285 (42%), Gaps = 40/285 (14%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKRE--VDEWLRVIGGLRHSNIVSIRAYC 396
             LG+GC G  +    +G   V +K ++      E  + E  +V+  LRH  +V + A  
Sbjct: 190 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQE-AQVMKKLRHEKLVQLYAVV 248

Query: 397 NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHL 456
           + ++ +++V +Y+  GSL   L   +G     +   + + +A+  A G+A++    + + 
Sbjct: 249 S-EEPIYIVTEYMSKGSLLDFL---KGETGKYLRLPQLVDMAAQIASGMAYVE---RMNY 301

Query: 457 FHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE-----LKFNNNNNYSQR 511
            H  L ++NI+V +     ++D G+ +L       ++ Y A +     +K+         
Sbjct: 302 VHRDLRAANILVGENLVCKVADFGLARLIE-----DNEYTARQGAKFPIKWTAPEAALYG 356

Query: 512 KFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKE-M 570
           +F  + DV+SFG++L E+ T          G V +  M+ +     EV   + +     M
Sbjct: 357 RFTIKSDVWSFGILLTELTT---------KGRVPYPGMVNR-----EV--LDQVERGYRM 400

Query: 571 EEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSID 612
                   +L  +   C    P++RP    +   +ED  T     
Sbjct: 401 PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQ 445

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 76.7 bits (189), Expect = 6e-15
 Identities = 46/207 (22%), Positives = 89/207 (42%), Gaps = 34/207 (16%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKRE--VDEWLRVIGGLRHSNIVSIRAYC 396
           + LG G  G  +    +    V VK ++      E  + E   V+  L+H  +V + A  
Sbjct: 194 KKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAE-ANVMKTLQHDKLVKLHAVV 252

Query: 397 NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHL 456
             K+ ++++ +++  GSL   L   +          K +  ++  A+G+AF+    + + 
Sbjct: 253 T-KEPIYIITEFMAKGSLLDFL---KSDEGSKQPLPKLIDFSAQIAEGMAFI---EQRNY 305

Query: 457 FHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN------------APELKFNN 504
            H  L ++NI+V       I+D G+ ++       ++ Y             APE     
Sbjct: 306 IHRDLRAANILVSASLVCKIADFGLARVIE-----DNEYTAREGAKFPIKWTAPE----- 355

Query: 505 NNNYSQRKFWQRCDVYSFGVVLLEILT 531
               +   F  + DV+SFG++L+EI+T
Sbjct: 356 --AINFGSFTIKSDVWSFGILLMEIVT 380

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.1 bits (190), Expect = 6e-15
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 11/137 (8%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFT 127
           L+ LDL+              L+ L  L L  N + S +    S    L+ L        
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT----GTLYSVN 183
                 +  L+ L+ ++++HN  +        + L NL  L L  N+        L  ++
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 184 SSSRSILDFNVSNNQLS 200
                 L  ++S N ++
Sbjct: 174 QMPLLNLSLDLSLNPMN 190

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.5 bits (186), Expect = 2e-14
 Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 19/157 (12%)

Query: 75  LEDLDLTG--------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRF 126
           LE LDL+          ++     T L+ L L  N + + + N      L+HL   H+  
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408

Query: 127 TGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSS 185
                  V  SLR+L  +D+SH              L +L  L++  N F         +
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 186 SRSILDF-NVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
               L F ++S  QL  Q+         ++F    +L
Sbjct: 468 ELRNLTFLDLSQCQLE-QLSP-------TAFNSLSSL 496

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.8 bits (179), Expect = 1e-13
 Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLN--LSSWPHLKHLYLSHNRF 126
           L  LD++          + + L+ L +L +  N    + L    +   +L  L LS  + 
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 127 TGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGT 178
               P+  +SL  L+ ++++ N  +  +P     RL +L  + L  N +  +
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 31/138 (22%), Positives = 44/138 (31%), Gaps = 8/138 (5%)

Query: 75  LEDLDLT----GPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSW---PHLKHLYLSHNRFT 127
           L+ L  T    G A     L  L  L L  N LS       S      LK+L LS N   
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSR 187
            T  S    L  L  +D  H+  +     +    L NL+ L +           + +   
Sbjct: 387 -TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 188 SILDFNVSNNQLSGQIPA 205
           S+    ++ N        
Sbjct: 446 SLEVLKMAGNSFQENFLP 463

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 37/219 (16%), Positives = 60/219 (27%), Gaps = 19/219 (8%)

Query: 7   FFFSFFCLFSLCLSNSPYSDISTLLSFKASVTGSSDSLSS---WVNSTDPCFDSWRGVTC 63
                  L    L    + +   L  F  S      +L+     +   D   D    +  
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 64  NPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSH 123
             +      LV   ++             L L++ K     +  L       LK L  + 
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL-----KSLKRLTFTS 334

Query: 124 NRFTGTFPSGVSSLRHLRRVDLSHNA-YEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSV 182
           N+    F      L  L  +DLS N                +L  L L  N    T+ S 
Sbjct: 335 NKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 391

Query: 183 NSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
                 +   +  ++ L  Q+         S F   +NL
Sbjct: 392 FLGLEQLEHLDFQHSNLK-QMSE------FSVFLSLRNL 423

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 18/152 (11%)

Query: 52  DPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRL-TQLRLLSLKNNLLSS-SNLN 109
           +PC +    +T              +L+     ++   L    + L L  N L    + +
Sbjct: 1   EPCVEVVPNITYQ----------CMELNFY---KIPDNLPFSTKNLDLSFNPLRHLGSYS 47

Query: 110 LSSWPHLKHLYLSHNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTL 168
             S+P L+ L LS      T   G   SL HL  + L+ N  +  + +   + L +L  L
Sbjct: 48  FFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105

Query: 169 RLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS 200
              +              +++ + NV++N + 
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 27/145 (18%), Positives = 47/145 (32%), Gaps = 19/145 (13%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRL----LSLKNNLLSSSNLNLSSWPHLKHLYLSHN 124
           LE LDL+           L  L Q+ L    L L  N ++           L  L L +N
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210

Query: 125 RFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTR--LPNLLTLRLEDNRFTGTLYS 181
             +          L  L    L    +  E  + +  +  L  L  L +E+ R     Y 
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 182 VNSSS------RSILDFNVSNNQLS 200
           ++          ++  F++ +  + 
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIE 295

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLYLSHNRFT 127
           L  LDL+            + L+ L++L++ +N L S           L+ ++L  N + 
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

Query: 128 GTFPS 132
            + P 
Sbjct: 532 CSCPR 536

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.9 bits (184), Expect = 6e-15
 Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 14/151 (9%)

Query: 69  RVIKLVLEDLDLTG---PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSW-----PHLKHLY 120
            + +L LE+L++TG   P  + +    L +L+L+N   ++ +  L+       P LK L 
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 121 LSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTE---LTRLPNLLTLRLEDNRFT- 176
           ++           V     L  +DLS N   GE  +       + P L  L L +     
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 177 --GTLYSVNSSSRSILDFNVSNNQLSGQIPA 205
             G   ++ ++   +   ++S+N L     A
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.6 bits (178), Expect = 4e-14
 Identities = 29/156 (18%), Positives = 49/156 (31%), Gaps = 12/156 (7%)

Query: 55  FDSWRGVTCNPSTHRVIKLVLEDLDLTG-PAEVLSRLTQLRLLSLKNNLLSSSN-----L 108
            D+W           +  L +          E +     L  L L +N           L
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

Query: 109 NLSSWPHLKHLYLSHNRFT---GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNL 165
               +P L+ L L +       G   +  ++   L+ +DLSHN+               L
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 166 LTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSG 201
            +L L        +     +  S+LD  +S N+L  
Sbjct: 256 NSLNLSFTGLK-QVPKGLPAKLSVLD--LSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.9 bits (145), Expect = 6e-10
 Identities = 25/150 (16%), Positives = 53/150 (35%), Gaps = 10/150 (6%)

Query: 64  NPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSN----LNLSSWPHLKHL 119
             S   ++K V  + DL    +++ +   L+ L+++   + S      L +     L+ L
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDII-KSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 120 YLSHNRFTGTFPSGV-----SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNR 174
            L +   TGT P  +       L  L   ++S    +  +   +    P L  L +    
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 175 FTGTLYSVNSSSRSILDFNVSNNQLSGQIP 204
                        ++   ++S+N   G+  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERG 190

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.5 bits (144), Expect = 8e-10
 Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 75  LEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSS-NLNLSSWP-HLKHLYLSHNRFTGTFPS 132
           +E       A + +   QL+ L L +N L  +       WP  L  L LS          
Sbjct: 213 METPSGVCSA-LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG 271

Query: 133 GVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTG 177
             + L  L   DLS+N  +   P      LP +  L L+ N F  
Sbjct: 272 LPAKLSVL---DLSYNRLD-RNP--SPDELPQVGNLSLKGNPFLD 310

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 75.9 bits (187), Expect = 8e-15
 Identities = 70/345 (20%), Positives = 118/345 (34%), Gaps = 85/345 (24%)

Query: 339 ELLGKGCVGATYKVVLDGGD--------VVVVKRIRERKKKREVDEWLR------VIGGL 384
           + LG+G  G        G D         V VK ++    ++++ + +       +IG  
Sbjct: 75  KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG-- 132

Query: 385 RHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKR---------- 434
           +H NI+++   C     L+++ +Y   G+L   L   R PG                   
Sbjct: 133 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 192

Query: 435 -LKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFIND 493
            +  A   A+G+ +L         H  L++ N++V +     I+D G+ +  H      D
Sbjct: 193 LVSCAYQVARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHH----ID 245

Query: 494 AYN------------APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGE 540
            Y             APE L          R +  + DV+SFGV+L EI T         
Sbjct: 246 YYKKTTNGRLPVKWMAPEALFD--------RIYTHQSDVWSFGVLLWEIFT--------- 288

Query: 541 LGIVKWVQMMGQDESAWEVFDFEL---IMDK------EMEEEMRALLQVALLCLAPLPKD 591
           LG   +  +        E+F        MDK      E+   MR        C   +P  
Sbjct: 289 LGGSPYPGV-----PVEELFKLLKEGHRMDKPSNCTNELYMMMRD-------CWHAVPSQ 336

Query: 592 RPNMSIVHRMIEDIRTKGSIDGCANSIMNNISSDSSPSQSENTYN 636
           RP    +   ++ I    S         ++      P+     +N
Sbjct: 337 RPTFKQLVEDLDRIVALTSNQEMGYYHHHHHHDYDIPTTENLYFN 381

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 74.7 bits (184), Expect = 9e-15
 Identities = 49/285 (17%), Positives = 109/285 (38%), Gaps = 43/285 (15%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR--ERKKKREVDEWL---RVIGGLRHSNIVSI 392
           + +G+G     Y+   L  G  V +K+++  +    +   + +    ++  L H N++  
Sbjct: 38  KKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKY 97

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
            A     +EL +V +    G L  ++   +   R  +      K        L  +H   
Sbjct: 98  YASFIEDNELNIVLELADAGDLSRMIKHFKKQKR-LIPERTVWKYFVQLCSALEHMHSRR 156

Query: 453 KAHLFHGHLSSSNIVVDQLGNACISDIGV-HQLFH----------TPFFINDAYNAPELK 501
                H  +  +N+ +   G   + D+G+                TP+     Y +PE  
Sbjct: 157 V---MHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPY-----YMSPERI 208

Query: 502 FNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFD 561
             + N Y+      + D++S G +L E+   +      ++ +    + + Q        D
Sbjct: 209 --HENGYN-----FKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQC-------D 254

Query: 562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR 606
           +  +      EE+R L+    +C+ P P+ RP+++ V+ + + + 
Sbjct: 255 YPPLPSDHYSEELRQLVN---MCINPDPEKRPDVTYVYDVAKRMH 296

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 75.0 bits (185), Expect = 9e-15
 Identities = 40/216 (18%), Positives = 80/216 (37%), Gaps = 45/216 (20%)

Query: 339 ELLGKGCVG----ATYKVVLDGGDVVV-VKRIRERKKKREVDEWLR---VIGGLRHSNIV 390
           ++LG G  G      +    +   + V +K +RE    +   E L    V+  + + ++ 
Sbjct: 21  KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVC 80

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMP--VDWNKRLKLASDSAKGLAFL 448
            +   C     + L+   +P G L   +   +        ++W          AKG+ +L
Sbjct: 81  RLLGICL-TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNW------CVQIAKGMNYL 133

Query: 449 HGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN------------ 496
                  L H  L++ N++V    +  I+D G+ +L        +               
Sbjct: 134 E---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA----EEKEYHAEGGKVPIKWM 186

Query: 497 APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           A E +          R +  + DV+S+GV + E++T
Sbjct: 187 ALESILH--------RIYTHQSDVWSYGVTVWELMT 214

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 76.5 bits (188), Expect = 9e-15
 Identities = 61/285 (21%), Positives = 121/285 (42%), Gaps = 40/285 (14%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKRE--VDEWLRVIGGLRHSNIVSIRAYC 396
             LG+GC G  +    +G   V +K ++      E  + E  +V+  LRH  +V + A  
Sbjct: 273 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQE-AQVMKKLRHEKLVQLYAVV 331

Query: 397 NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHL 456
           + ++ +++V +Y+  GSL   L   +G     +   + + +A+  A G+A++    + + 
Sbjct: 332 S-EEPIYIVTEYMSKGSLLDFL---KGETGKYLRLPQLVDMAAQIASGMAYVE---RMNY 384

Query: 457 FHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE-----LKFNNNNNYSQR 511
            H  L ++NI+V +     ++D G+ +L       ++ Y A +     +K+         
Sbjct: 385 VHRDLRAANILVGENLVCKVADFGLARLIE-----DNEYTARQGAKFPIKWTAPEAALYG 439

Query: 512 KFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKE-M 570
           +F  + DV+SFG++L E+ T          G V +  M+ +     EV   + +     M
Sbjct: 440 RFTIKSDVWSFGILLTELTT---------KGRVPYPGMVNR-----EV--LDQVERGYRM 483

Query: 571 EEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSID 612
                   +L  +   C    P++RP    +   +ED  T     
Sbjct: 484 PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQ 528

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 74.2 bits (183), Expect = 1e-14
 Identities = 56/297 (18%), Positives = 103/297 (34%), Gaps = 63/297 (21%)

Query: 339 ELLGKGCVG----ATYKVVLDGGDV----VVVKRIRERKKKREVDEWLR---VIGGLRHS 387
           E LG+G          + V D G +    V++K + +  +    + +     ++  L H 
Sbjct: 14  ESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYS-ESFFEAASMMSKLSHK 72

Query: 388 NIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAF 447
           ++V     C   DE  LV +++  GSL + L  ++    +      +L++A   A  + F
Sbjct: 73  HLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINIL----WKLEVAKQLAAAMHF 128

Query: 448 LHGYNKAHLFHGHLSSSNIVVDQLGNAC--------ISDIGVHQLFHTPFFINDAYN--- 496
           L    +  L HG++ + NI++ +  +          +SD G+           D      
Sbjct: 129 L---EENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLP----KDILQERI 181

Query: 497 ---APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQD 553
               PE   N       +      D +SFG  L EI +          G      +  Q 
Sbjct: 182 PWVPPECIENP------KNLNLATDKWSFGTTLWEICS---------GGDKPLSALDSQ- 225

Query: 554 ESAWEVFDF---ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT 607
                   F      +      E+  L+     C+   P  RP+   + R +  + T
Sbjct: 226 ----RKLQFYEDRHQLPAPKAAELANLI---NNCMDYEPDHRPSFRAIIRDLNSLFT 275

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 48/210 (22%), Positives = 79/210 (37%), Gaps = 30/210 (14%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKK--REVDEWLRVIGGLRHSNIVSIRAY 395
            +LGKG  G  Y    L     + +K I ER  +  + + E + +   L+H NIV     
Sbjct: 28  VVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGS 87

Query: 396 CNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAH 455
            +    + +  + +P GSL +LL    GP  +  +            +GL +LH     H
Sbjct: 88  FSENGFIKIFMEQVPGGSLSALLRSKWGP--LKDNEQTIGFYTKQILEGLKYLHDNQIVH 145

Query: 456 LFHGHLSSSNIVVDQLGNAC-ISDIGV-----------HQLFHTPFFINDAYNAPELKFN 503
                +   N++++       ISD G                 T       Y APE+   
Sbjct: 146 R---DIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQ-----YMAPEIIDK 197

Query: 504 NNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
               Y      +  D++S G  ++E+ TGK
Sbjct: 198 GPRGYG-----KAADIWSLGCTIIEMATGK 222

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 29/155 (18%), Positives = 52/155 (33%), Gaps = 18/155 (11%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFT 127
           L  LD++          +   L  L+ L + +N L   S+   S    L+ L L     T
Sbjct: 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165

Query: 128 GTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSS 186
            + P+   S L  L  + L H      I      RL  L  L +    +  T+       
Sbjct: 166 -SIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223

Query: 187 RSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
            ++   ++++  L+  +P         +      L
Sbjct: 224 LNLTSLSITHCNLT-AVPY-------LAVRHLVYL 250

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 8/109 (7%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFT 127
           LE L L        P E LS L  L +L L++  +++  + +      LK L +SH  + 
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT 176
            T         +L  + ++H      +P   +  L  L  L L  N  +
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 26/170 (15%)

Query: 54  CFDSWRGVTCNPSTHRVIKLVLEDLDLTG-PAEVLSRLTQLRLLSLKNNLLSSSNLNLSS 112
           C    R V C+                   P  + +    L L    N + + +    +S
Sbjct: 9   CSAQDRAVLCH------------RKRFVAVPEGIPTETRLLDLGK--NRIKTLNQDEFAS 54

Query: 113 WPHLKHLYLSHNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLE 171
           +PHL+ L L+ N  +     G  ++L +LR + L  N  +  IP+   T L NL  L + 
Sbjct: 55  FPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDIS 112

Query: 172 DNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
           +N+    L  +     ++    V +N L   I          +F+G  +L
Sbjct: 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISH-------RAFSGLNSL 154

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.3 bits (149), Expect = 5e-10
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 10/134 (7%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFT 127
           L+ L+++                 L  LS+ +  L++   L +    +L+ L LS+N  +
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261

Query: 128 GTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSS 186
            T    +   L  L+ + L        +       L  L  L +  N+ T    SV  S 
Sbjct: 262 -TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319

Query: 187 RSILDFNVSNNQLS 200
            ++    + +N L+
Sbjct: 320 GNLETLILDSNPLA 333

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 71/310 (22%), Positives = 118/310 (38%), Gaps = 77/310 (24%)

Query: 339 ELLGKGCVG----ATYKVVLDGGD--VVVVKRIRERKKKREVDEWLR---VIGGLRHSNI 389
             LG+G  G    A    +    D  +V VK +++        ++ R   ++  L+H +I
Sbjct: 21  RELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKD-PTLAARKDFQREAELLTNLQHEHI 79

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKR-----------LKLA 438
           V     C   D L +V++Y+ HG L+  L        + VD   R           L +A
Sbjct: 80  VKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIA 139

Query: 439 SDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNAC-ISDIGVHQLFHTPFFINDAYN- 496
           S  A G+ +L      H  H  L++ N +V        I D G+ +  ++     D Y  
Sbjct: 140 SQIASGMVYL---ASQHFVHRDLATRNCLVGA-NLLVKIGDFGMSRDVYS----TDYYRV 191

Query: 497 -----------APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIV 544
                       PE + +         KF    DV+SFGV+L EI T          G  
Sbjct: 192 GGHTMLPIRWMPPESIMYR--------KFTTESDVWSFGVILWEIFT---------YGKQ 234

Query: 545 KWVQMMGQDESAWEVFDFELIMD-KEME------EEMRALLQVALLCLAPLPKDRPNMSI 597
            W Q+     S  EV   E I   + +E      +E+  ++   L C    P+ R N+  
Sbjct: 235 PWFQL-----SNTEV--IECITQGRVLERPRVCPKEVYDVM---LGCWQREPQQRLNIKE 284

Query: 598 VHRMIEDIRT 607
           +++++  +  
Sbjct: 285 IYKILHALGK 294

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTG 128
           L ++DL+             ++ +L  L + NN L + NL     P LK L LSHN    
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL- 308

Query: 129 TFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT 176
                      L  + L HN+    +    L+    L  L L  N + 
Sbjct: 309 HVERNQPQFDRLENLYLDHNSIV-TLK---LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 20/138 (14%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFT 127
           L  L L        P  +     +L  LS+ NN L    +    +   L++L LS NR T
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSR 187
                 +  +  L   ++S+N       ++ L     +  L    N     +    +   
Sbjct: 179 -HVDLSL--IPSLFHANVSYN------LLSTLAIPIAVEELDASHNSIN-VVRGPVNVEL 228

Query: 188 SILDFNVSNNQLSGQIPA 205
           +IL   + +N L+     
Sbjct: 229 TILK--LQHNNLT-DTAW 243

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTG 128
           +E+LD +          V   LT L    L++N L+ +   L ++P L  + LS+N    
Sbjct: 207 VEELDASHNSINVVRGPVNVELTIL---KLQHNNLTDTA-WLLNYPGLVEVDLSYNELE- 261

Query: 129 TFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSR 187
                    ++ L R+ +S+N     + +     +P L  L L  N     +        
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRLV-ALNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQFD 318

Query: 188 SILDFNVSNNQLS 200
            + +  + +N + 
Sbjct: 319 RLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 18/137 (13%), Positives = 37/137 (27%), Gaps = 12/137 (8%)

Query: 87  LSRLTQLRLLSLKNNLLS-SSNLNLSSWPHLKHLYLSHNRFTGTFPSGV-SSLRHLRRVD 144
           L        + +              +  + K +   ++      P+ +  S R +  ++
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 145 LSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP 204
           L+    E EI          +  L +  N        V  +   +    +  N LS  +P
Sbjct: 76  LNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 133

Query: 205 AWMSPFGGSSFAGNKNL 221
                     F     L
Sbjct: 134 R-------GIFHNTPKL 143

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 73.8 bits (182), Expect = 2e-14
 Identities = 59/293 (20%), Positives = 112/293 (38%), Gaps = 60/293 (20%)

Query: 339 ELLGKGCVGATYKVVLDGGD----VVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVS 391
           E++G+G  G  Y   L   D       VK +       EV ++L    ++    H N++S
Sbjct: 31  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 90

Query: 392 IRAYC-NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
           +   C   +    +V  Y+ HG L + +        +       +      AKG+ +L  
Sbjct: 91  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVK----DLIGFGLQVAKGMKYL-- 144

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN-------------- 496
                  H  L++ N ++D+     ++D G+ +  +      + Y+              
Sbjct: 145 -ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYD----KEYYSVHNKTGAKLPVKWM 199

Query: 497 APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDES 555
           A E L+         +KF  + DV+SFGV+L E++T          G   +      D +
Sbjct: 200 ALESLQT--------QKFTTKSDVWSFGVLLWELMT---------RGAPPY-----PDVN 237

Query: 556 AWEVFDFELIMDKEMEEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
            +++  + L+  + + +       L +V L C  P  + RP+ S +   I  I
Sbjct: 238 TFDITVY-LLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI 289

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 62/301 (20%), Positives = 119/301 (39%), Gaps = 67/301 (22%)

Query: 339 ELLGKGCVGATYKVVLDGGDV---VVVKRIRERKKKREVDEWLR---VIGGL-RHSNIVS 391
           +++G+G  G   K  +    +     +KR++E   K +  ++     V+  L  H NI++
Sbjct: 31  DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 90

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKR-----------LKLASD 440
           +   C  +  L+L  +Y PHG+L   L  SR     P                 L  A+D
Sbjct: 91  LLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAAD 150

Query: 441 SAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN---- 496
            A+G+ +L   ++    H  L++ NI+V +   A I+D G+ +         + Y     
Sbjct: 151 VARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSR-------GQEVYVKKTM 200

Query: 497 --------APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWV 547
                   A E L +          +    DV+S+GV+L EI++         LG   + 
Sbjct: 201 GRLPVRWMAIESLNY--------SVYTTNSDVWSYGVLLWEIVS---------LGGTPYC 243

Query: 548 QMMGQDESAWEVFDFELIMDKEMEEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIED 604
            M     +  E+++  L     +E+ +     +  +   C    P +RP+ + +   +  
Sbjct: 244 GM-----TCAELYEK-LPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNR 297

Query: 605 I 605
           +
Sbjct: 298 M 298

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 59/271 (21%), Positives = 91/271 (33%), Gaps = 52/271 (19%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR-ERKKKREVDEWLRVIGGL----RHSNIVS- 391
             LG G  G  +KV   + G +  VKR     +  ++    L  +G      +H   V  
Sbjct: 63  SRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRL 122

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY 451
            +A+  G   L+L  +     SL            +P    +      D+   LA LH  
Sbjct: 123 EQAWEEG-GILYLQTELC-GPSLQQHC--EAWGASLPEA--QVWGYLRDTLLALAHLHSQ 176

Query: 452 NKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA-----YNAPELKFNNNN 506
              HL    +  +NI +   G   + D G+     T            Y APEL      
Sbjct: 177 GLVHL---DVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPEL---LQG 230

Query: 507 NYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM 566
           +Y         DV+S G+ +LE+         GE     W Q+             +  +
Sbjct: 231 SYGTA-----ADVFSLGLTILEVACNMELPHGGEG----WQQL------------RQGYL 269

Query: 567 DKEMEE----EMRALLQVALLCLAPLPKDRP 593
             E       E+R++L    + L P PK R 
Sbjct: 270 PPEFTAGLSSELRSVLV---MMLEPDPKLRA 297

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 38/207 (18%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKRE-VDEWLRVIGGLRHSNIVSIRAYC- 396
           + +GKG  G        G  V V K I+     +  + E   V+  LRHSN+V +     
Sbjct: 199 QTIGKGEFGDVMLGDYRGNKVAV-KCIKNDATAQAFLAE-ASVMTQLRHSNLVQLLGVIV 256

Query: 397 NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHL 456
             K  L++V +Y+  GSL   L   R  GR  +  +  LK + D  + + +L      + 
Sbjct: 257 EEKGGLYIVTEYMAKGSLVDYL---RSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNF 310

Query: 457 FHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN------------APELKFNN 504
            H  L++ N++V +   A +SD G+ +         +A +            APE     
Sbjct: 311 VHRDLAARNVLVSEDNVAKVSDFGLTK---------EASSTQDTGKLPVKWTAPE----- 356

Query: 505 NNNYSQRKFWQRCDVYSFGVVLLEILT 531
                ++KF  + DV+SFG++L EI +
Sbjct: 357 --ALREKKFSTKSDVWSFGILLWEIYS 381

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 72.6 bits (179), Expect = 3e-14
 Identities = 67/287 (23%), Positives = 115/287 (40%), Gaps = 58/287 (20%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKRE-VDEWLRVIGGLRHSNIVSIRAYC- 396
           + +GKG  G        G  V V K I+     +  + E   V+  LRHSN+V +     
Sbjct: 27  QTIGKGEFGDVMLGDYRGNKVAV-KCIKNDATAQAFLAE-ASVMTQLRHSNLVQLLGVIV 84

Query: 397 NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHL 456
             K  L++V +Y+  GSL   L   R  GR  +  +  LK + D  + + +L      + 
Sbjct: 85  EEKGGLYIVTEYMAKGSLVDYL---RSRGRSVLGGDCLLKFSLDVCEAMEYL---EGNNF 138

Query: 457 FHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN------------APE-LKFN 503
            H  L++ N++V +   A +SD G            +A +            APE L+  
Sbjct: 139 VHRDLAARNVLVSEDNVAKVSDFG---------LTKEASSTQDTGKLPVKWTAPEALRE- 188

Query: 504 NNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE 563
                  +KF  + DV+SFG++L EI +          G V + ++  +     +V    
Sbjct: 189 -------KKFSTKSDVWSFGILLWEIYS---------FGRVPYPRIPLK-----DVVPR- 226

Query: 564 LIMDKEMEEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT 607
           +    +M+       A+ +V   C       RP+   +   +E I+T
Sbjct: 227 VEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKT 273

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 74.5 bits (183), Expect = 3e-14
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 26/154 (16%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFT 127
            +   +T        A +      ++ L L  N LS  S  +L+ +  L+ L LS N   
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSR 187
            T    + SL  LR +DL++N       + EL   P++ TL   +N  +    S     +
Sbjct: 72  ETLD--LESLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNISRVSCSRGQGKK 123

Query: 188 SILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
           +I    ++NN+++  +                 +
Sbjct: 124 NI---YLANNKIT-MLRD-------LDEGCRSRV 146

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 14/148 (9%)

Query: 75  LEDLDLTG-PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSG 133
           L  LDL     + L     +  L   NN +S   ++ S     K++YL++N+ T      
Sbjct: 82  LRTLDLNNNYVQELLVGPSIETLHAANNNISR--VSCSRGQGKKNIYLANNKITMLRDLD 139

Query: 134 VSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFN 193
                 ++ +DL  N  +             L  L L+ N        V  +    LD  
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLD-- 197

Query: 194 VSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
           +S+N+L+  +           F     +
Sbjct: 198 LSSNKLA-FMGP--------EFQSAAGV 216

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.9 bits (166), Expect = 4e-12
 Identities = 18/125 (14%), Positives = 43/125 (34%), Gaps = 9/125 (7%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTG 128
           LE L+L          +V+    +L+ L L +N L+       S   +  + L +N+   
Sbjct: 171 LEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV- 227

Query: 129 TFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRS 188
                +   ++L   DL  N +         ++   + T+  +  +          +  +
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 189 ILDFN 193
           +  + 
Sbjct: 288 LGHYG 292

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 10/122 (8%)

Query: 85  EVLSRLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRV 143
           E+     + ++  + ++ L  +  +   S  ++K L LS N  +    + ++    L  +
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 144 DLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQI 203
           +LS N    E    +L  L  L TL L +N     L        SI   + +NN +S ++
Sbjct: 64  NLSSNVLY-ETL--DLESLSTLRTLDLNNNYVQ-EL----LVGPSIETLHAANNNIS-RV 114

Query: 204 PA 205
             
Sbjct: 115 SC 116

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 11/109 (10%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRF-T 127
           L+ LDL+         E       +  +SL+NN L      L    +L+H  L  N F  
Sbjct: 193 LKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC 251

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT 176
           GT     S  + ++ V         ++                      
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCE 297

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 14/161 (8%), Positives = 40/161 (24%), Gaps = 6/161 (3%)

Query: 14  LFSLCLSNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTHRVIKL 73
           L    L  + +   +    F  +    + +  +    T    +        P+       
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT----VPTLGHYGAY 294

Query: 74  VLEDLDLTGPAEVLS-RLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPS 132
             EDL       +++ +  +  LLS + +          +    + +     ++      
Sbjct: 295 CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQ 354

Query: 133 GVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDN 173
                +    ++    A + E           L     +  
Sbjct: 355 VTLRKQAKITLEQKKKALD-EQVSNGRRAHAELDGTLQQAV 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 8e-05
 Identities = 15/140 (10%), Positives = 38/140 (27%), Gaps = 11/140 (7%)

Query: 75  LEDLDLTG-------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFT 127
           LE  DL G         +  S+  +++ ++    +   +  N          +       
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK-QTVKKLTGQNEEECTVPTLGHYGAYCCE 297

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIP---MTELTRLPNLLTLRLEDNRFTGTLYSVNS 184
                    L  L+R + +  + +G        E         +     ++   +  V  
Sbjct: 298 DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTL 357

Query: 185 SSRSILDFNVSNNQLSGQIP 204
             ++ +        L  Q+ 
Sbjct: 358 RKQAKITLEQKKKALDEQVS 377

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 49/216 (22%), Positives = 86/216 (39%), Gaps = 45/216 (20%)

Query: 339 ELLGKGCVG----ATYKVVLDGGDVVV-VKRIRERKKKREVDEWLR---VIGGLRHSNIV 390
           ++LG G  G      +    +   + V +K I ++  ++           IG L H++IV
Sbjct: 19  KVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIV 78

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMP--VDWNKRLKLASDSAKGLAFL 448
            +   C     L LV  YLP GSL   +   RG       ++W          AKG+ +L
Sbjct: 79  RLLGLCP-GSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNW------GVQIAKGMYYL 131

Query: 449 HGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN------------ 496
               +  + H +L++ N+++       ++D GV  L       +D               
Sbjct: 132 E---EHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPP----DDKQLLYSEAKTPIKWM 184

Query: 497 APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
           A E + F         K+  + DV+S+GV + E++T
Sbjct: 185 ALESIHF--------GKYTHQSDVWSYGVTVWELMT 212

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 31/155 (20%), Positives = 59/155 (38%), Gaps = 28/155 (18%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFT 127
            +   +T        A +      ++ L L  N LS  S  +L+ +  L+ L LS N   
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSS- 186
                 + SL  LR +DL++N       + EL   P++ TL   +N  +     V+ S  
Sbjct: 72  E--TLDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNIS----RVSCSRG 119

Query: 187 RSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
           +   +  ++NN+++  +                 +
Sbjct: 120 QGKKNIYLANNKIT-MLRD-------LDEGCRSRV 146

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 14/148 (9%)

Query: 75  LEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSG 133
           L  LDL     + L     +  L   NN +S   ++ S     K++YL++N+ T      
Sbjct: 82  LRTLDLNNNYVQELLVGPSIETLHAANNNISR--VSCSRGQGKKNIYLANNKITMLRDLD 139

Query: 134 VSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFN 193
                 ++ +DL  N  +             L  L L+ N        V  +    LD  
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLD-- 197

Query: 194 VSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
           +S+N+L+  +           F     +
Sbjct: 198 LSSNKLA-FMGP--------EFQSAAGV 216

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 18/125 (14%), Positives = 43/125 (34%), Gaps = 9/125 (7%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTG 128
           LE L+L          +V+    +L+ L L +N L+       S   +  + L +N+   
Sbjct: 171 LEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV- 227

Query: 129 TFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRS 188
                +   ++L   DL  N +         ++   + T+  +  +          +  +
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 189 ILDFN 193
           +  + 
Sbjct: 288 LGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.8 bits (161), Expect = 7e-12
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 10/122 (8%)

Query: 85  EVLSRLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRV 143
           E+     + ++  + ++ L  +  +   S  ++K L LS N  +    + ++    L  +
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 144 DLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQI 203
           +LS N    E    +L  L  L TL L +N     L        SI   + +NN +S ++
Sbjct: 64  NLSSNVLY-ETL--DLESLSTLRTLDLNNNYVQ-EL----LVGPSIETLHAANNNIS-RV 114

Query: 204 PA 205
             
Sbjct: 115 SC 116

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 72.3 bits (178), Expect = 4e-14
 Identities = 49/283 (17%), Positives = 99/283 (34%), Gaps = 56/283 (19%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRI-------RERKK-KREVDEWLRVIGGLRHSNI 389
             +G G  G   K+     G ++V K +        E++    EV     ++  L+H NI
Sbjct: 12  YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEV----NLLRELKHPNI 67

Query: 390 VSIRA--YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAF 447
           V             L++V +Y   G L S++       +  +D    L++ +     L  
Sbjct: 68  VRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQ-YLDEEFVLRVMTQLTLALKE 126

Query: 448 LHGYNKAHLF--HGHLSSSNIVVDQLGNACISDIGVHQLFH-----------TPFFINDA 494
            H  +       H  L  +N+ +D   N  + D G+ ++ +           TP+     
Sbjct: 127 CHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPY----- 181

Query: 495 YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQD 553
           Y +PE    N  +Y+++      D++S G +L E+           +  +   +   G+ 
Sbjct: 182 YMSPEQM--NRMSYNEK-----SDIWSLGCLLYELCALMPPFTAFSQKELAGKI-REGKF 233

Query: 554 ESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMS 596
                 +           +E+  ++      L      RP++ 
Sbjct: 234 RRIPYRYS----------DELNEIIT---RMLNLKDYHRPSVE 263

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 71.5 bits (176), Expect = 6e-14
 Identities = 48/293 (16%), Positives = 106/293 (36%), Gaps = 61/293 (20%)

Query: 339 ELLGKGCVGATYKVVLDGGDV----VVVKRIRERKKKREVDEWLR---VIGGLRHSNIVS 391
            +LG+G  G  Y+ V          V VK  ++       ++++    ++  L H +IV 
Sbjct: 18  RILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVK 77

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY 451
           +      ++  +++ +  P+G L   L  ++   ++       +  +    K +A+L   
Sbjct: 78  LIGIIE-EEPTWIIMELYPYGELGHYLERNKNSLKVL----TLVLYSLQICKAMAYL--- 129

Query: 452 NKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN------------APE 499
              +  H  ++  NI+V       + D G+     + +  ++ Y             +PE
Sbjct: 130 ESINCVHRDIAVRNILVASPECVKLGDFGL-----SRYIEDEDYYKASVTRLPIKWMSPE 184

Query: 500 -LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE 558
            + F        R+F    DV+ F V + EIL+          G   +  +  +     +
Sbjct: 185 SINF--------RRFTTASDVWMFAVCMWEILS---------FGKQPFFWLENK-----D 222

Query: 559 VFDFELIMDKE-MEEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT 607
           V    ++   + + +       L  +   C    P DRP  + +   + D+  
Sbjct: 223 V--IGVLEKGDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQ 273

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 72.7 bits (178), Expect = 7e-14
 Identities = 33/273 (12%), Positives = 77/273 (28%), Gaps = 40/273 (14%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEW--------LRVIGGLRHSNIV 390
            LLG+G     Y+      +    K+    K ++  + W        +  +        +
Sbjct: 71  HLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKPSMQHMFM 130

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
              +    ++   LV +   +G+L + ++  +      +     +  A      +  +H 
Sbjct: 131 KFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHD 190

Query: 451 YNKAH--------LFHGHLSSSNIVVDQLGNACISDIGV---------HQLFHTPFFIND 493
               H        +        +   D      + D+G            +F        
Sbjct: 191 CEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTA-KCETS 249

Query: 494 AYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMG-- 551
            +   E+   +N  ++      + D +     +  +L G   K   E G  K   +    
Sbjct: 250 GFQCVEML--SNKPWN-----YQIDYFGVAATVYCMLFGTYMKVKNEGGECKPEGLFRRL 302

Query: 552 -QDESAWEVFDFELIMDK----EMEEEMRALLQ 579
              +   E F   L +         + +R  L+
Sbjct: 303 PHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLK 335

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 71.5 bits (176), Expect = 7e-14
 Identities = 49/293 (16%), Positives = 97/293 (33%), Gaps = 61/293 (20%)

Query: 339 ELLGKGCVG----ATYKVVLDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVS 391
             +G+G  G      Y    +    V +K  +        +++L+    +    H +IV 
Sbjct: 21  RCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVK 80

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY 451
           +      ++ ++++ +    G L S L   +    +       +  A   +  LA+L   
Sbjct: 81  LIGVIT-ENPVWIIMELCTLGELRSFLQVRKYSLDLA----SLILYAYQLSTALAYL--- 132

Query: 452 NKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN------------APE 499
                 H  +++ N++V       + D G+     + +  +  Y             APE
Sbjct: 133 ESKRFVHRDIAARNVLVSSNDCVKLGDFGL-----SRYMEDSTYYKASKGKLPIKWMAPE 187

Query: 500 -LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE 558
            + F        R+F    DV+ FGV + EIL           G+  +  +        +
Sbjct: 188 SINF--------RRFTSASDVWMFGVCMWEILM---------HGVKPFQGVKNN-----D 225

Query: 559 VFDFELIMDKE-MEEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT 607
           V     I + E +         L  +   C A  P  RP  + +   +  I  
Sbjct: 226 V--IGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE 276

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 72.3 bits (178), Expect = 7e-14
 Identities = 63/318 (19%), Positives = 115/318 (36%), Gaps = 79/318 (24%)

Query: 339 ELLGKGCVGATYKVVLDGGD--------VVVVKRIRERKKKREVDEWLR------VIGGL 384
           + LG+G  G        G D         V VK +++   ++++ + +       +IG  
Sbjct: 41  KPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG-- 98

Query: 385 RHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKR---------- 434
           +H NI+++   C     L+++ +Y   G+L   L   R PG        R          
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158

Query: 435 -LKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFIND 493
            +      A+G+ +L         H  L++ N++V +     I+D G+ +  +      D
Sbjct: 159 LVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINN----ID 211

Query: 494 AYN------------APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGE 540
            Y             APE L          R +  + DV+SFGV++ EI T         
Sbjct: 212 YYKKTTNGRLPVKWMAPEALFD--------RVYTHQSDVWSFGVLMWEIFT--------- 254

Query: 541 LGIVKWVQMMGQDESAWEVFDFELIMDKEME------EEMRALLQVALLCLAPLPKDRPN 594
           LG   +  +        E+F   L     M+       E+  ++     C   +P  RP 
Sbjct: 255 LGGSPYPGI-----PVEELFKL-LKEGHRMDKPANCTNELYMMM---RDCWHAVPSQRPT 305

Query: 595 MSIVHRMIEDIRTKGSID 612
              +   ++ I T  + +
Sbjct: 306 FKQLVEDLDRILTLTTNE 323

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 72.0 bits (177), Expect = 8e-14
 Identities = 60/314 (19%), Positives = 119/314 (37%), Gaps = 67/314 (21%)

Query: 339 ELLGKGCVGATYKVVLDGGD----VVVVKRIRER-KKKREVDEWLR---VIGGLRHSNIV 390
            +LGKG  G+  +  L   D     V VK ++       +++E+LR    +    H ++ 
Sbjct: 29  RMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVA 88

Query: 391 SIRAYC------NGKDELFLVYDYLPHGSLHSLLHGSRGPGR-MPVDWNKRLKLASDSAK 443
            +                 ++  ++ HG LH+ L  SR       +     ++   D A 
Sbjct: 89  KLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIAC 148

Query: 444 GLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN------- 496
           G+ +L   +  +  H  L++ N ++ +    C++D G+ +  ++     D Y        
Sbjct: 149 GMEYL---SSRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYS----GDYYRQGCASKL 201

Query: 497 -----APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMM 550
                A E L  N         +    DV++FGV + EI+T          G   +  + 
Sbjct: 202 PVKWLALESLADN--------LYTVHSDVWAFGVTMWEIMT---------RGQTPYAGI- 243

Query: 551 GQDESAWEVFDFELIMDKEME------EEMRALLQVALLCLAPLPKDRPNMSIVHRMIED 604
                  E++++ LI    ++      EE+  L+     C +  PK RP+ + +   +E+
Sbjct: 244 ----ENAEIYNY-LIGGNRLKQPPECMEEVYDLM---YQCWSADPKQRPSFTCLRMELEN 295

Query: 605 IRTKGSIDGCANSI 618
           I    S+   +   
Sbjct: 296 ILGHLSVLSTSQDP 309

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 72.1 bits (177), Expect = 9e-14
 Identities = 59/293 (20%), Positives = 111/293 (37%), Gaps = 60/293 (20%)

Query: 339 ELLGKGCVGATYKVVLDGGD----VVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVS 391
           E++G+G  G  Y   L   D       VK +       EV ++L    ++    H N++S
Sbjct: 95  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 154

Query: 392 IRAYCNGKDE-LFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
           +   C   +    +V  Y+ HG L + +        +       +      AKG+ FL  
Sbjct: 155 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVK----DLIGFGLQVAKGMKFL-- 208

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN-------------- 496
                  H  L++ N ++D+     ++D G+ +  +      +  +              
Sbjct: 209 -ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYD----KEFDSVHNKTGAKLPVKWM 263

Query: 497 APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDES 555
           A E L+         +KF  + DV+SFGV+L E++T          G   +      D +
Sbjct: 264 ALESLQT--------QKFTTKSDVWSFGVLLWELMT---------RGAPPY-----PDVN 301

Query: 556 AWEVFDFELIMDKEMEEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
            +++  + L+  + + +       L +V L C  P  + RP+ S +   I  I
Sbjct: 302 TFDITVY-LLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI 353

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.4 bits (176), Expect = 1e-13
 Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 20/151 (13%)

Query: 75  LEDLDLTG----PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTF 130
           L  L L          L+ LT L   +   N ++     +++   L  L + +N+ T   
Sbjct: 179 LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDL- 236

Query: 131 PSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSIL 190
            S +++L  L  +++  N       +  +  L  L  L +  N+ +    SV ++   + 
Sbjct: 237 -SPLANLSQLTWLEIGTNQISD---INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLN 290

Query: 191 DFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
              ++NNQL  +              G  NL
Sbjct: 291 SLFLNNNQLGNEDM--------EVIGGLTNL 313

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.5 bits (171), Expect = 6e-13
 Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 10/130 (7%)

Query: 75  LEDLDLTGPA----EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTF 130
           L  L +          L+ L+QL  L +  N +S  N  +     LK L +  N+ +   
Sbjct: 223 LNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISD-- 279

Query: 131 PSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSIL 190
            S +++L  L  + L++N    E     +  L NL TL L  N  T       +S   + 
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNEDM-EVIGGLTNLTTLFLSQNHITD--IRPLASLSKMD 336

Query: 191 DFNVSNNQLS 200
             + +N  + 
Sbjct: 337 SADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.0 bits (162), Expect = 7e-12
 Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 13/135 (9%)

Query: 75  LEDLDL-----TGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGT 129
           L +L L     +     L+ LT++  L+L  N   S    LS+   L +L ++ ++    
Sbjct: 112 LRELYLNEDNISDI-SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD- 169

Query: 130 FPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSI 189
             + +++L  L  + L++N  E   P   L  L +L       N+ T    +  ++   +
Sbjct: 170 -VTPIANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDI--TPVANMTRL 223

Query: 190 LDFNVSNNQLSGQIP 204
               + NN+++   P
Sbjct: 224 NSLKIGNNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.3 bits (155), Expect = 6e-11
 Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 16/142 (11%)

Query: 75  LEDLDLTGPA----EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTF 130
           +  L + G      + +  LT L  L+L  N ++  +  LS+   L +LY+  N+ T   
Sbjct: 46  ITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITD-- 102

Query: 131 PSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSIL 190
            S + +L +LR + L+ +      P   L  L  + +L L  N     L  + S+   + 
Sbjct: 103 ISALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPL-SNMTGLN 158

Query: 191 DFNVSNNQLSGQIPAWMSPFGG 212
              V+ +++       ++P   
Sbjct: 159 YLTVTESKVKD-----VTPIAN 175

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.0 bits (149), Expect = 3e-10
 Identities = 17/115 (14%), Positives = 43/115 (37%), Gaps = 8/115 (6%)

Query: 87  LSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS 146
            + L +     L+   ++   +       +  L ++  +       G+  L +L  ++L+
Sbjct: 18  DADLAEGIRAVLQKASVTDV-VTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLN 74

Query: 147 HNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSG 201
            N      P   L+ L  L  L +  N+ T    S   +  ++ +  ++ + +S 
Sbjct: 75  GNQITDISP---LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISD 124

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 11/111 (9%)

Query: 90  LTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNA 149
              L  L    N +       +         L     T         L  + ++ ++   
Sbjct: 2   AATLATLPAPINQIF----PDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEK 55

Query: 150 YEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS 200
                 +  +  L NL  L L  N+ T    S  S+   + +  +  N+++
Sbjct: 56  VAS---IQGIEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKIT 101

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 70.7 bits (174), Expect = 1e-13
 Identities = 57/308 (18%), Positives = 108/308 (35%), Gaps = 74/308 (24%)

Query: 339 ELLGKGCVG----ATYKVVLDGGD--VVVVKRIRERKKKREVDEWLR---VIGGLRHSNI 389
           E LG+   G            G     V +K ++++ +    +E+     +   L+H N+
Sbjct: 15  EELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNV 74

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKR-----------LKLA 438
           V +         L +++ Y  HG LH  L        +    + R           + L 
Sbjct: 75  VCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLV 134

Query: 439 SDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNAC-ISDIGVHQLFHTPFFINDAYN- 496
           +  A G+ +L   +  H+ H  L++ N++V        ISD+G+ +  +      D Y  
Sbjct: 135 AQIAAGMEYL---SSHHVVHKDLATRNVLVYD-KLNVKISDLGLFREVYA----ADYYKL 186

Query: 497 -----------APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIV 544
                      APE + +         KF    D++S+GVVL E+ +          G+ 
Sbjct: 187 LGNSLLPIRWMAPEAIMY--------GKFSIDSDIWSYGVVLWEVFS---------YGLQ 229

Query: 545 KWVQMMGQDESAWEVFDFELIMDKEME------EEMRALLQVALLCLAPLPKDRPNMSIV 598
            +        S  +V +  +   + +         + AL+   + C    P  RP    +
Sbjct: 230 PYCGY-----SNQDVVEM-IRNRQVLPCPDDCPAWVYALM---IECWNEFPSRRPRFKDI 280

Query: 599 HRMIEDIR 606
           H  +    
Sbjct: 281 HSRLRAWG 288

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 48/211 (22%), Positives = 85/211 (40%), Gaps = 34/211 (16%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR-ERKKKREVDEWL---RVIGGLRHSNIVSIR 393
           + +G+G  G    V   + G   V+K I   R   +E +E      V+  ++H NIV  R
Sbjct: 30  QKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYR 89

Query: 394 AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNK 453
                   L++V DY   G L   ++  +G   +    ++ L         L  +H    
Sbjct: 90  ESFEENGSLYIVMDYCEGGDLFKRINAQKG---VLFQEDQILDWFVQICLALKHVH---D 143

Query: 454 AHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----------TPFFINDAYNAPELKF 502
             + H  + S NI + + G   + D G+ ++ +           TP+     Y +PE+  
Sbjct: 144 RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPY-----YLSPEIC- 197

Query: 503 NNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
             N  Y+      + D+++ G VL E+ T K
Sbjct: 198 -ENKPYN-----NKSDIWALGCVLYELCTLK 222

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 50/297 (16%), Positives = 100/297 (33%), Gaps = 61/297 (20%)

Query: 339 ELLGKGCVG----ATYKVVLDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVS 391
             +G+G  G      Y    +    V +K  +        +++L+    +    H +IV 
Sbjct: 396 RCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVK 455

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY 451
           +      ++ ++++ +    G L S L   +      +D    +  A   +  LA+L   
Sbjct: 456 LIGVIT-ENPVWIIMELCTLGELRSFLQVRKFS----LDLASLILYAYQLSTALAYL--- 507

Query: 452 NKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN------------APE 499
                 H  +++ N++V       + D G+     + +  +  Y             APE
Sbjct: 508 ESKRFVHRDIAARNVLVSSNDCVKLGDFGL-----SRYMEDSTYYKASKGKLPIKWMAPE 562

Query: 500 -LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE 558
            + F        R+F    DV+ FGV + EIL           G+  +  +        +
Sbjct: 563 SINF--------RRFTSASDVWMFGVCMWEILM---------HGVKPFQGVKNN-----D 600

Query: 559 VFDFELIMDKE-MEEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSI 611
           V     I + E +         L  +   C A  P  RP  + +   +  I  +  +
Sbjct: 601 V--IGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKL 655

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 51/223 (22%), Positives = 86/223 (38%), Gaps = 51/223 (22%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR-ERKK-KREVDEWLRVIGGLRHSNIV----- 390
           EL+G G  G  +K      G   V+KR++   +K +REV    + +  L H NIV     
Sbjct: 17  ELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREV----KALAKLDHVNIVHYNGC 72

Query: 391 -----------SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLAS 439
                      S  +  +    LF+  ++   G+L   +   RG     +D    L+L  
Sbjct: 73  WDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRG---EKLDKVLALELFE 129

Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-----HQLFH-----TPF 489
              KG+ ++H      L +  L  SNI +       I D G+     +         T  
Sbjct: 130 QITKGVDYIH---SKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLR 186

Query: 490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
                Y +PE    ++ +Y +       D+Y+ G++L E+L  
Sbjct: 187 -----YMSPEQI--SSQDYGKE-----VDLYALGLILAELLHV 217

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 69.9 bits (172), Expect = 2e-13
 Identities = 60/289 (20%), Positives = 106/289 (36%), Gaps = 56/289 (19%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRAY 395
           + LG G  G        G   V VK I+E       DE+ +    +  L H  +V     
Sbjct: 14  KELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM--SEDEFFQEAQTMMKLSHPKLVKFYGV 71

Query: 396 CNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAH 455
           C+ +  +++V +Y+ +G L + L                L++  D  +G+AFL       
Sbjct: 72  CSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQ----LLEMCYDVCEGMAFL---ESHQ 124

Query: 456 LFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN------------APE-LKF 502
             H  L++ N +VD+     +SD G+ +        +D Y             APE   +
Sbjct: 125 FIHRDLAARNCLVDRDLCVKVSDFGMTRYVL-----DDQYVSSVGTKFPVKWSAPEVFHY 179

Query: 503 NNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF 562
                    K+  + DV++FG+++ E+ +         LG + +           EV   
Sbjct: 180 --------FKYSSKSDVWAFGILMWEVFS---------LGKMPYDLYTNS-----EVVLK 217

Query: 563 ELIMDKEMEEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK 608
            +     +         + Q+   C   LP+ RP    +   IE +R K
Sbjct: 218 -VSQGHRLYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK 265

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 48/320 (15%), Positives = 102/320 (31%), Gaps = 60/320 (18%)

Query: 339 ELLGKGCVG----ATYKVVLDGGDVVV-VKRIRERKKKREVDEWLR---VIGGLRHSNIV 390
           ++LG G  G      +    +   + V +K +RE    +   E L    V+  + + ++ 
Sbjct: 21  KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVC 80

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
            +   C     + L+   +P G L   +   +      +     L      AKG+ +L  
Sbjct: 81  RLLGICL-TSTVQLITQLMPFGCLLDYVREHKDN----IGSQYLLNWCVQIAKGMNYLE- 134

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN------------AP 498
                L H  L++ N++V    +  I+D G+ +L        +               A 
Sbjct: 135 --DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA----EEKEYHAEGGKVPIKWMAL 188

Query: 499 E-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAW 557
           E +          R +  + DV+S+GV + E++T          G   +  +        
Sbjct: 189 ESILH--------RIYTHQSDVWSYGVTVWELMT---------FGSKPYDGIPAS----- 226

Query: 558 EVFDFELIMDKEMEEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDI-RTKGSIDG 613
           E+    L   + + +       +  + + C       RP    +      + R       
Sbjct: 227 EISSI-LEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLV 285

Query: 614 CANSIMNNISSDSSPSQSEN 633
                  ++ S +  +    
Sbjct: 286 IQGDERMHLPSPTDSNFYRA 305

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 36/231 (15%), Positives = 75/231 (32%), Gaps = 55/231 (23%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR--------ERKKKREVDEWLRVIGGLRHSNI 389
           E +G G  G+ +K V    G +  +KR +        E+   REV     V+G  +HS++
Sbjct: 17  EKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYA-HAVLG--QHSHV 73

Query: 390 VS-IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFL 448
           V    A+    D + +  +Y   GSL   +  +           +   L     +GL ++
Sbjct: 74  VRYFSAWAED-DHMLIQNEYCNGGSLADAISENYRIMS-YFKEAELKDLLLQVGRGLRYI 131

Query: 449 HGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH---------------------- 486
           H  +  H+    +  SNI + +      +     +                         
Sbjct: 132 HSMSLVHM---DIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQ 188

Query: 487 ----TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
                       + A E+    N  +       + D+++  + ++     +
Sbjct: 189 VEEGDSR-----FLANEV-LQENYTHL-----PKADIFALALTVVCAAGAE 228

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 29/107 (27%), Positives = 34/107 (31%), Gaps = 10/107 (9%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFT 127
           L+ L L        P +    L  L  L L  N +SS           L  L L  NR  
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 128 GTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDN 173
                     L  L  + L  N     +P   L  L  L  LRL DN
Sbjct: 191 -HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 31/140 (22%), Positives = 42/140 (30%), Gaps = 21/140 (15%)

Query: 75  LEDLDLTG-------PAEVLSRLTQLRLLSLKNNLLSS------SNLNLSSWPHLKHLYL 121
           LE LDL+               L +L  L L    L          L       L++LYL
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL-----AALQYLYL 136

Query: 122 SHNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLY 180
             N      P      L +L  + L  N     +P      L +L  L L  NR      
Sbjct: 137 QDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHP 194

Query: 181 SVNSSSRSILDFNVSNNQLS 200
                   ++   +  N LS
Sbjct: 195 HAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 9/110 (8%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFT 127
            + + L G      PA        L +L L +N+L+       +    L+ L LS N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 128 GTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT 176
            +        L  L  + L     + E+       L  L  L L+DN   
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ 142

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 91  TQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFTGTFPSGV-SSLRHLRRVDLSHN 148
              + + L  N +S     +  +  +L  L+L  N       +   + L  L ++DLS N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90

Query: 149 AYEGEIPMTELTRLPNLLTLRLEDNRFT 176
           A    +       L  L TL L+     
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 62/302 (20%), Positives = 122/302 (40%), Gaps = 66/302 (21%)

Query: 339 ELLGKGCVGATYKVVLDGGD----VVVVKRIR-ERKKKREVDEWLR---VIGGLRHSNIV 390
           ++LG+G  G+  +  L   D     V VK ++ +   +RE++E+L     +    H N++
Sbjct: 40  KILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVI 99

Query: 391 SIRAYC-----NGKDELFLVYDYLPHGSLHSLLHGSR-GPGRMPVDWNKRLKLASDSAKG 444
            +   C      G  +  ++  ++ +G LH+ L  SR   G   +     LK   D A G
Sbjct: 100 RLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALG 159

Query: 445 LAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN-------- 496
           + +L   +  +  H  L++ N ++      C++D G+ +  ++     D Y         
Sbjct: 160 MEYL---SNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYS----GDYYRQGRIAKMP 212

Query: 497 ----APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMG 551
               A E L          R +  + DV++FGV + EI T          G+  +  +  
Sbjct: 213 VKWIAIESLAD--------RVYTSKSDVWAFGVTMWEIAT---------RGMTPYPGV-- 253

Query: 552 QDESAWEVFDFELIMDKEME------EEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
                 E++D+ L+    ++      +E+  ++     C    P DRP  S++   +E +
Sbjct: 254 ---QNHEMYDY-LLHGHRLKQPEDCLDELYEIM---YSCWRTDPLDRPTFSVLRLQLEKL 306

Query: 606 RT 607
             
Sbjct: 307 LE 308

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 55/293 (18%), Positives = 116/293 (39%), Gaps = 61/293 (20%)

Query: 339 ELLGKGCVG----ATYKVVLDGGDVVV-VKRIRERKKKREVDEWLR---VIGGLRHSNIV 390
           +++G G  G       K      +V V +K ++    +++  ++L    ++G   H NI+
Sbjct: 50  KVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNII 109

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
            +    +    + ++ +Y+ +G+L   L    G   +     + + +    A G+ +L  
Sbjct: 110 RLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVL----QLVGMLRGIAAGMKYL-- 163

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNAC-ISDIGVHQLFHTPFFINDAYN------------A 497
               +  H  L++ NI+V+     C +SD G+ ++        +A              A
Sbjct: 164 -ANMNYVHRDLAARNILVNS-NLVCKVSDFGLSRVLED---DPEATYTTSGGKIPIRWTA 218

Query: 498 PE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESA 556
           PE + +        RKF    DV+SFG+V+ E++T          G   + ++       
Sbjct: 219 PEAISY--------RKFTSASDVWSFGIVMWEVMT---------YGERPYWELSNH---- 257

Query: 557 WEVFDFELIMDKE-MEEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
            EV   + I D   +   M    A+ Q+ + C       RP  + +  +++ +
Sbjct: 258 -EV--MKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKL 307

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 64/322 (19%), Positives = 115/322 (35%), Gaps = 87/322 (27%)

Query: 339 ELLGKGCVGATYKVVLDGGD--------VVVVKRIRERKKKREVDEWLR------VIGGL 384
           + LG+GC G        G D         V VK +++   ++++ + +       +IG  
Sbjct: 87  KPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG-- 144

Query: 385 RHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKR---------- 434
           +H NI+++   C     L+++ +Y   G+L   L   R PG        R          
Sbjct: 145 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 204

Query: 435 -LKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIG----VHQLFHTPF 489
            +      A+G+ +L         H  L++ N++V +     I+D G    ++       
Sbjct: 205 LVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINN------ 255

Query: 490 FINDAYN------------APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAK 536
              D Y             APE L          R +  + DV+SFGV++ EI T     
Sbjct: 256 --IDYYKKTTNGRLPVKWMAPEALFD--------RVYTHQSDVWSFGVLMWEIFT----- 300

Query: 537 GDGELGIVKWVQMMGQDESAWEVFDFELIMDKEME------EEMRALLQVALLCLAPLPK 590
               LG   +  +        E+F   L     M+       E+  ++     C   +P 
Sbjct: 301 ----LGGSPYPGI-----PVEELFKL-LKEGHRMDKPANCTNELYMMM---RDCWHAVPS 347

Query: 591 DRPNMSIVHRMIEDIRTKGSID 612
            RP    +   ++ I T  + +
Sbjct: 348 QRPTFKQLVEDLDRILTLTTNE 369

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 4e-13
 Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 7/122 (5%)

Query: 79  DLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLR 138
           DLTG    +     ++ L++ N   ++ N  +S   +L+ L +     T      +S L 
Sbjct: 58  DLTG----IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLT 112

Query: 139 HLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQ 198
            L  +D+SH+A++ +  +T++  LP + ++ L  N     +     +   +   N+  + 
Sbjct: 113 SLTLLDISHSAHD-DSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDG 170

Query: 199 LS 200
           + 
Sbjct: 171 VH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 25/128 (19%)

Query: 75  LEDLDLTG----PAEVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGT 129
           ++DL +          +S L+ L  L +    ++S  + NLS    L  L +SH+    +
Sbjct: 68  IKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127

Query: 130 FPSGVSSLRHLRRVDLSHNAYEGEIP----MTELTRL----------------PNLLTLR 169
             + +++L  +  +DLS+N    +I     + EL  L                P L  L 
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLY 187

Query: 170 LEDNRFTG 177
                  G
Sbjct: 188 AFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 20/151 (13%), Positives = 54/151 (35%), Gaps = 14/151 (9%)

Query: 72  KLVLEDLDLTGPAEV-LSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTF 130
             +   L  +  A +  +++  L  ++L N  ++     +    ++K L +++   T   
Sbjct: 24  AYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY- 81

Query: 131 PSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSIL 190
            + +S L +L R+ +       +     L+ L +L  L +  +    ++ +  ++   + 
Sbjct: 82  -NPISGLSNLERLRIMGKDVTSDKI-PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139

Query: 191 DFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
             ++S N     I                 L
Sbjct: 140 SIDLSYNGAITDI---------MPLKTLPEL 161

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 31/111 (27%), Positives = 41/111 (36%), Gaps = 10/111 (9%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSW---PHLKHLYLSHNR 125
              L+L        P  V  +LTQL  LSL +N LS       S      LK+L LS N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 126 FTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT 176
              T  S    L  L  +D  H+  +     +    L NL+ L +      
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 18/139 (12%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLN--LSSWPHLKHLYLSHNRF 126
           L  LD++          + + L+ L +L +  N    + L    +   +L  L LS  + 
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 127 TGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT----GTLYS 181
                    +SL  L+ +++SHN +   +       L +L  L    N         L  
Sbjct: 188 E-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245

Query: 182 VNSSSRSILDFNVSNNQLS 200
             SS   +   N++ N  +
Sbjct: 246 FPSSLAFL---NLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 22/158 (13%)

Query: 72  KLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSS-------SNLNLSSWPHLKHLYLSHN 124
            L L    +   +     L QL  L  +++ L          +L      +L +L +SH 
Sbjct: 82  YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-----RNLIYLDISHT 136

Query: 125 RFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVN 183
                  +G+ + L  L  + ++ N+++        T L NL  L L   +      +  
Sbjct: 137 HTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195

Query: 184 SSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
           +S  S+   N+S+N     +           +    +L
Sbjct: 196 NSLSSLQVLNMSHNNFF-SLDT-------FPYKCLNSL 225

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 14/122 (11%)

Query: 106 SNLNLSSWP-----HLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNA-YEGEIPMTEL 159
           ++  L+S P         L L  N+           L  L ++ LS N            
Sbjct: 15  NSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74

Query: 160 TRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNK 219
               +L  L L  N    T+ S       +   +  ++ L  Q+  +      S F   +
Sbjct: 75  FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEF------SVFLSLR 126

Query: 220 NL 221
           NL
Sbjct: 127 NL 128

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 17/145 (11%)

Query: 62  TCNPSTHRVIKLVLEDLDLTG-PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHL 119
           +C+ +      +      LT  P  + S  T+L    L++N L S  +        L  L
Sbjct: 6   SCSGTE-----IRCNSKGLTSVPTGIPSSATRL---ELESNKLQSLPHGVFDKLTQLTKL 57

Query: 120 YLSHNRFT-GTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTG 177
            LS N  +     S        L+ +DLS N     +       L  L  L  + +    
Sbjct: 58  SLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLK- 114

Query: 178 TLYSVN--SSSRSILDFNVSNNQLS 200
            +   +   S R+++  ++S+    
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTR 139

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 69.6 bits (171), Expect = 5e-13
 Identities = 57/287 (19%), Positives = 105/287 (36%), Gaps = 50/287 (17%)

Query: 339 ELLGKGCVG----ATYKVVLDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVS 391
           +++G G  G       +V       V +K ++    +R+  ++L    ++G   H NI+ 
Sbjct: 55  KIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIR 114

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY 451
           +           +V +Y+ +GSL + L    G         + + +      G+ +L   
Sbjct: 115 LEGVVTRGRLAMIVTEYMENGSLDTFLRTHDG----QFTIMQLVGMLRGVGAGMRYL--- 167

Query: 452 NKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN------------APE 499
           +     H  L++ N++VD      +SD G+ ++        DA              APE
Sbjct: 168 SDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDD---PDAAYTTTGGKIPIRWTAPE 224

Query: 500 -LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE 558
            + F        R F    DV+SFGVV+ E+L           G   +  M  +D     
Sbjct: 225 AIAF--------RTFSSASDVWSFGVVMWEVLA---------YGERPYWNMTNRD--VIS 265

Query: 559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
             +    +         AL Q+ L C       RP  S +  +++ +
Sbjct: 266 SVEEGYRLPA-PMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDAL 311

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.9 bits (171), Expect = 5e-13
 Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 25/120 (20%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS------SNLNLSSWPHLKHLYLS 122
           L  LDL+          + S L  L +L L NN +         ++       L+ LYLS
Sbjct: 90  LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM-----AQLQKLYLS 144

Query: 123 HNRFT----GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNL--LTLRLEDNRFT 176
            N+ +           + L  L  +DLS N  + ++P+T+L +LP      L L +N   
Sbjct: 145 QNQISRFPVELI-KDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 19/140 (13%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFT 127
           L  L L+        +E    +  LR L L +N L +      S    L+ L L +N   
Sbjct: 66  LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125

Query: 128 GTFPSGV-SSLRHLRRVDLSHNAYEGEIPM---TELTRLPNLLTLRLEDNRFT----GTL 179
                     +  L+++ LS N      P+    +  +LP L+ L L  N+        L
Sbjct: 126 -VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183

Query: 180 YSVNSSSRSILDFNVSNNQL 199
             + +  ++ L  +  NN L
Sbjct: 184 QKLPAWVKNGLYLH--NNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 37/175 (21%), Positives = 63/175 (36%), Gaps = 27/175 (15%)

Query: 75  LEDLDLTG-------PAEVLSRLTQLRLLSLKNNLLSS------SNLNLSSWPHLKHLYL 121
              LDL+             +RLT L  L L +N L+         +     P+L++L L
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV-----PNLRYLDL 95

Query: 122 SHNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT---- 176
           S N    T    + S L+ L  + L +N     +       +  L  L L  N+ +    
Sbjct: 96  SSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPV 153

Query: 177 GTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPLPSDCS 231
             +   N     ++  ++S+N+L  ++P        +       L   PL  DC 
Sbjct: 154 ELIKDGNKLP-KLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 69.6 bits (171), Expect = 5e-13
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 13/113 (11%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFT- 127
           L  L L+           L+    LR L L NN L      L+   +++ +YL +N  + 
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277

Query: 128 ---GTF--PSGVSSLRHLRRVDLSHNAYE-GEIPMTELTRLPNLLTLRLEDNR 174
                F  P   +       V L  N  +  EI  +    +     ++L + +
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 23/135 (17%), Positives = 51/135 (37%), Gaps = 14/135 (10%)

Query: 75  LEDLDLTG--------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRF 126
           +  ++L                 + +L  + + +  +++  +     P L  L+L  N+ 
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQGLPPSLTELHLDGNKI 204

Query: 127 TGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSS 185
           T    +     L +L ++ LS N+    +    L   P+L  L L +N+    +    + 
Sbjct: 205 T-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261

Query: 186 SRSILDFNVSNNQLS 200
            + I    + NN +S
Sbjct: 262 HKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 32/168 (19%)

Query: 62  TCNPSTHRVIKLVLEDLDLTG-PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHL 119
            C+        +   DL L   P ++      L    L+NN ++   + +  +  +L  L
Sbjct: 30  QCHLRV-----VQCSDLGLEKVPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLHTL 81

Query: 120 YLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLP-----NLLTLRLEDNR 174
            L +N+ +   P   + L  L R+ LS N         +L  LP      L  LR+ +N 
Sbjct: 82  ILINNKISKISPGAFAPLVKLERLYLSKN---------QLKELPEKMPKTLQELRVHENE 132

Query: 175 FTGTLYSVNSSSRSILDFNVSNNQL-SGQIPAWMSPFGGSSFAGNKNL 221
            T    SV +    ++   +  N L S  I          +F G K L
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN-------GAFQGMKKL 173

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.0 bits (174), Expect = 6e-13
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 17/134 (12%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFT 127
           L+ L+L          E    L  L++L+L  NLL    + N    P + ++ L  N   
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSR 187
                    L  L+ +DL  NA      +T +  +P++  + L  N+   TL  +N ++ 
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNA------LTTIHFIPSIPDIFLSGNKLV-TLPKINLTAN 404

Query: 188 SILDFNVSNNQLSG 201
            I   ++S N+L  
Sbjct: 405 LI---HLSENRLEN 415

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.8 bits (171), Expect = 1e-12
 Identities = 28/137 (20%), Positives = 46/137 (33%), Gaps = 12/137 (8%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSS--NLNLSSWPHLKHLYLSHNRF 126
            E L L+        A     L QL+LL L +     +       + P+L+ L L  ++ 
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 127 TGTFPSGV-SSLRHLRRVDLSHNA-YEGEIPMTELTRLPNLLTLRLEDNRFTG-TLYSVN 183
                      L HL  + L      +  +       L  L  L L  N+     L+   
Sbjct: 86  Y-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144

Query: 184 SSSRSILDFNVSNNQLS 200
               S+   + S+NQ+ 
Sbjct: 145 GKLNSLKSIDFSSNQIF 161

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.4 bits (157), Expect = 7e-11
 Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 12/141 (8%)

Query: 85  EVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFTGTFPSGV-SSLRHLRR 142
           +V   L     L L  N + + +  +      L+ L L       T       +L +LR 
Sbjct: 18  QVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRI 77

Query: 143 VDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVN--SSSRSILDFNVSNNQLS 200
           +DL  +     +       L +L  LRL     +  +       + +++   ++S NQ+ 
Sbjct: 78  LDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136

Query: 201 GQIPAWMSPFGGSSFAGNKNL 221
                  S +   SF    +L
Sbjct: 137 -------SLYLHPSFGKLNSL 150

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 25/166 (15%), Positives = 59/166 (35%), Gaps = 10/166 (6%)

Query: 44  LSSWVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTG------PAEVLSRL--TQLRL 95
           +S    + D   +    ++ + +   ++   +                  + L  + +R 
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270

Query: 96  LSLKNNLLSSSNLNLSSW-PHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEI 154
           L L +  + S N  +      LK L L++N+           L +L+ ++LS+N    E+
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-EL 329

Query: 155 PMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS 200
             +    LP +  + L+ N               +   ++ +N L+
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.7 bits (150), Expect = 4e-10
 Identities = 48/236 (20%), Positives = 80/236 (33%), Gaps = 38/236 (16%)

Query: 75  LEDLDLTG-------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSW------PHLKHLYL 121
           L+ L L           +  S    L  L L  N+L  +      W       HL+ LYL
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487

Query: 122 SHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYS 181
           +HN      P   S L  LR + L+ N     +   +L    NL  L +  N+      +
Sbjct: 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDL--PANLEILDISRNQLL----A 540

Query: 182 VNSSSRSILD-FNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPLPSDCSN-------- 232
            N      L   ++++N+   +    +S F       N  + G P    C          
Sbjct: 541 PNPDVFVSLSVLDITHNKFICECE--LSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVS 598

Query: 233 -RTVEPEQPPRSRPRSSRVVTVIVIVIFDAVAILVAVVTVT------WCCYKRKRR 281
             ++  E         S   ++ ++        L+ ++TVT      + CYK  +R
Sbjct: 599 LFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQR 654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 23/129 (17%), Positives = 35/129 (27%), Gaps = 10/129 (7%)

Query: 97  SLKNNLLSSSNLNLSS----WPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEG 152
           S    +      NL+         + L LS N       S    L  L+ ++L       
Sbjct: 3   SFDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 153 EIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGG 212
            I       LPNL  L L  ++              + +  +    LS  +         
Sbjct: 63  TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV------LKD 116

Query: 213 SSFAGNKNL 221
             F   K L
Sbjct: 117 GYFRNLKAL 125

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 12/136 (8%)

Query: 75  LEDLDLTG--------PAEVLSRLTQLRLLSLKNNLLSSSNLN--LSSWPHLKHLYLSHN 124
           L +L L                 L  L  L L  N + S  L+        LK +  S N
Sbjct: 99  LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158

Query: 125 RFTGTFPSGVSSLR--HLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSV 182
           +        +  L+   L    L+ N+    + +     +     + LE    +G  ++V
Sbjct: 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218

Query: 183 NSSSRSILDFNVSNNQ 198
           + +       + S   
Sbjct: 219 DITGNFSNAISKSQAF 234

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 69.4 bits (170), Expect = 6e-13
 Identities = 40/214 (18%), Positives = 75/214 (35%), Gaps = 43/214 (20%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR-ERKKKREVDEWLRVIGGLRHSNIVSIRAYC 396
             +G+G  G  +++     G    VK++R E  +  E+        GL    IV +    
Sbjct: 64  PRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEELV----ACAGLSSPRIVPLYGAV 119

Query: 397 NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHL 456
                + +  + L  GSL  L+   +  G +P D          + +GL +LH       
Sbjct: 120 REGPWVNIFMELLEGGSLGQLI---KQMGCLPEDRAL--YYLGQALEGLEYLHTRRIL-- 172

Query: 457 FHGHLSSSNIVVDQLGNAC-ISDIGV----------------HQLFHTPFFINDAYNAPE 499
            HG + + N+++   G+   + D G                   +  T       + APE
Sbjct: 173 -HGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTET-----HMAPE 226

Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           +               + D++S   ++L +L G 
Sbjct: 227 VV--MGKPCD-----AKVDIWSSCCMMLHMLNGC 253

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.5 bits (173), Expect = 6e-13
 Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 10/135 (7%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLYLSHNRFT 127
           ++ LDL+           L     L++L LK++ +++   +   S   L+HL LS N  +
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 128 GTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLED-NRFTGTLYSVNSS 185
            +  S     L  L+ ++L  N Y+     +    L NL TLR+ +   F+       + 
Sbjct: 88  -SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 186 SRSILDFNVSNNQLS 200
             S+ +  +    L 
Sbjct: 147 LTSLNELEIKALSLR 161

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 10/136 (7%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS--SNLNLSSWPHLKHLYLSHNRF 126
           LE LDL+        +     L+ L+ L+L  N   +        +  +L+ L + +   
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 127 TGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSS 185
                    + L  L  +++   +         L  + ++  L L  +     L      
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194

Query: 186 SRSILDFNVSNNQLSG 201
             S+    + +  L+ 
Sbjct: 195 LSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.6 bits (168), Expect = 3e-12
 Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 18/143 (12%)

Query: 79  DLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLR 138
            +    E+L  L  L  L +  N       +      ++ L LS         + +   +
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQ 431

Query: 139 HLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQ 198
            L  +D+S+N  +    +     LP L  L +  N+      +       ++   +S NQ
Sbjct: 432 TLEVLDVSNNNLD-SFSL----FLPRLQELYISRNKLKTLPDASLFPVLLVMK--ISRNQ 484

Query: 199 LSGQIPAWMSPFGGSSFAGNKNL 221
           L   +P          F    +L
Sbjct: 485 LK-SVPD-------GIFDRLTSL 499

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 13/162 (8%)

Query: 64  NPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSH 123
           + S + ++KL+   L+L+        L  L   +   + + S    + +   ++ L++  
Sbjct: 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET-VTIRRLHIPQ 295

Query: 124 NRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVN 183
                   +  S L  ++R+ + ++     +P +    L +L  L L +N      Y  N
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMV-EEYLKN 353

Query: 184 SSSRSILD----FNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
           S+ +          +S N L            G      KNL
Sbjct: 354 SACKGAWPSLQTLVLSQNHLR------SMQKTGEILLTLKNL 389

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 9e-08
 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 3/109 (2%)

Query: 92  QLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYE 151
              +   ++   +S    L+    +K L LS N+ T      + +  +L+ + L  +   
Sbjct: 6   ASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 152 GEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS 200
             I       L +L  L L DN  +    S      S+   N+  N   
Sbjct: 64  -TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 8e-07
 Identities = 19/127 (14%), Positives = 43/127 (33%), Gaps = 1/127 (0%)

Query: 86  VLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDL 145
           VL+  +   LL L   +L  S +             + +        G      +RR+ +
Sbjct: 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293

Query: 146 SHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPA 205
               Y      T  + L  +  + +E+++      S +   +S+   ++S N +  +   
Sbjct: 294 PQF-YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352

Query: 206 WMSPFGG 212
             +  G 
Sbjct: 353 NSACKGA 359

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.4 bits (173), Expect = 6e-13
 Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 14/132 (10%)

Query: 75  LEDLDL-----TGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGT 129
           L++L L           L+ LT L  L L NN +S+    LS    L  L L  N+ +  
Sbjct: 223 LDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNI 280

Query: 130 FPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSI 189
             S ++ L  L  ++L+ N  E   P   ++ L NL  L L  N  +    S  SS   +
Sbjct: 281 --SPLAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDI--SPVSSLTKL 333

Query: 190 LDFNVSNNQLSG 201
                 NN++S 
Sbjct: 334 QRLFFYNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.2 bits (170), Expect = 1e-12
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 17/136 (12%)

Query: 75  LEDLDL-----TGPAEVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTG 128
           L  L+L     +     LS LT L+ LS  N +     L NL++   L+ L +S N+ + 
Sbjct: 136 LNRLELSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPLANLTT---LERLDISSNKVSD 191

Query: 129 TFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRS 188
              S ++ L +L  +  ++N      P   L  L NL  L L  N+         +S  +
Sbjct: 192 --ISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTN 244

Query: 189 ILDFNVSNNQLSGQIP 204
           + D +++NNQ+S   P
Sbjct: 245 LTDLDLANNQISNLAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 70  VIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGT 129
            +K VL   ++T      + L Q+  L      + S +  +    +L  +  S+N+ T  
Sbjct: 26  KMKTVLGKTNVTDT-VSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTD- 82

Query: 130 FPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSI 189
             + + +L  L  + +++N      P   L  L NL  L L +N+ T        +  ++
Sbjct: 83  -ITPLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDI--DPLKNLTNL 136

Query: 190 LDFNVSNNQLSG 201
               +S+N +S 
Sbjct: 137 NRLELSSNTISD 148

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 10/133 (7%)

Query: 72  KLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFP 131
            L  + L +    + +  L  L  ++  NN L+     L +   L  + +++N+      
Sbjct: 50  TLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIAD--I 105

Query: 132 SGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILD 191
           + +++L +L  + L +N      P   L  L NL  L L  N  +        +S   L 
Sbjct: 106 TPLANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISALSGLTSLQQLS 162

Query: 192 FNVSNNQLSGQIP 204
           F    NQ++   P
Sbjct: 163 F---GNQVTDLKP 172

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 20/118 (16%), Positives = 45/118 (38%), Gaps = 8/118 (6%)

Query: 87  LSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS 146
            + L +     L    ++ + ++ +    +  L             GV  L +L +++ S
Sbjct: 20  DTALAEKMKTVLGKTNVTDT-VSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFS 76

Query: 147 HNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP 204
           +N      P   L  L  L+ + + +N+        N ++ + L   + NNQ++   P
Sbjct: 77  NNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLT--LFNNQITDIDP 129

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 6e-07
 Identities = 15/113 (13%), Positives = 35/113 (30%), Gaps = 12/113 (10%)

Query: 97  SLKNNLLSSSNL-----NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYE 151
            L +  ++           ++        L     T T     + L  +  +       +
Sbjct: 2   PLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK 59

Query: 152 GEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP 204
               +  +  L NL  +   +N+ T      N +    +   ++NNQ++   P
Sbjct: 60  S---IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL--MNNNQIADITP 107

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 9e-07
 Identities = 19/135 (14%), Positives = 44/135 (32%), Gaps = 11/135 (8%)

Query: 75  LEDLDL-----TGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGT 129
           L+ L       +     L+ LT +  LS  +N +S     L++   +  L L+   +T  
Sbjct: 333 LQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQAWTNA 390

Query: 130 FPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSI 189
             +  +++      +   N     I    ++   +     +  N  +     V+ +    
Sbjct: 391 PVNYKANVSIP---NTVKNVTGALIAPATISDGGSYTEPDITWNLPSY-TNEVSYTFSQP 446

Query: 190 LDFNVSNNQLSGQIP 204
           +         SG + 
Sbjct: 447 VTIGKGTTTFSGTVT 461

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 68.8 bits (169), Expect = 7e-13
 Identities = 68/325 (20%), Positives = 115/325 (35%), Gaps = 96/325 (29%)

Query: 339 ELLGKGCVGATYK-----VVLDGGDVVV-VKRIRERKKKREVDEWLR---VIGGLRHSNI 389
           + LG+G  G   K     +    G   V VK ++E     E+ + L    V+  + H ++
Sbjct: 29  KTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHV 88

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKR--------------- 434
           + +   C+    L L+ +Y  +GSL   L  SR  G   +                    
Sbjct: 89  IKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALT 148

Query: 435 ----LKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIG----VHQLFH 486
               +  A   ++G+ +L    +  L H  L++ NI+V +     ISD G    V++   
Sbjct: 149 MGDLISFAWQISQGMQYL---AEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYE--- 202

Query: 487 TPFFINDAYN------------APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
                 D+Y             A E L            +  + DV+SFGV+L EI+T  
Sbjct: 203 -----EDSYVKRSQGRIPVKWMAIESLFD--------HIYTTQSDVWSFGVLLWEIVT-- 247

Query: 534 MAKGDGELGIVKWVQMMGQDESAWEVFDFELI----MDK------EMEEEMRALLQVALL 583
                  LG   +  +         +F+  L     M++      EM   M         
Sbjct: 248 -------LGGNPYPGI-----PPERLFNL-LKTGHRMERPDNCSEEMYRLMLQ------- 287

Query: 584 CLAPLPKDRPNMSIVHRMIEDIRTK 608
           C    P  RP  + + + +E +  K
Sbjct: 288 CWKQEPDKRPVFADISKDLEKMMVK 312

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 69.3 bits (170), Expect = 8e-13
 Identities = 60/322 (18%), Positives = 124/322 (38%), Gaps = 61/322 (18%)

Query: 339 ELLGKGCVG----ATYKVVLDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVS 391
           +++G G  G       K+       V +K ++    +++  ++L    ++G   H NI+ 
Sbjct: 51  KVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIR 110

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY 451
           +         + +V +Y+ +GSL S L              + + +    A G+ +L   
Sbjct: 111 LEGVVTKSKPVMIVTEYMENGSLDSFLRKHDA----QFTVIQLVGMLRGIASGMKYL--- 163

Query: 452 NKAHLFHGHLSSSNIVVDQLGNAC-ISDIGVHQLFHTPFFINDAYN------------AP 498
           +     H  L++ NI+++     C +SD G+ ++        +A              +P
Sbjct: 164 SDMGYVHRDLAARNILINS-NLVCKVSDFGLGRVLE---DDPEAAYTTRGGKIPIRWTSP 219

Query: 499 E-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAW 557
           E + +        RKF    DV+S+G+VL E+++          G   + +M  Q     
Sbjct: 220 EAIAY--------RKFTSASDVWSYGIVLWEVMS---------YGERPYWEMSNQ----- 257

Query: 558 EVFDFELIMDKE-MEEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIED-IRTKGSID 612
           +V   + + +   +   M    AL Q+ L C      +RP    +  +++  IR  GS+ 
Sbjct: 258 DV--IKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNPGSLK 315

Query: 613 GCANSIMNNISSDSSPSQSENT 634
              ++     +     S  + T
Sbjct: 316 IITSAAARPSNLLLDQSNVDIT 337

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.2 bits (171), Expect = 8e-13
 Identities = 30/135 (22%), Positives = 48/135 (35%), Gaps = 3/135 (2%)

Query: 42  DSLSSWVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNN 101
           D + +                       V  L L   DLT     L +L  +  L L +N
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN 473

Query: 102 LLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTR 161
            L +    L++   L+ L  S N        GV++L  L+ + L +N  +    +  L  
Sbjct: 474 RLRALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVS 531

Query: 162 LPNLLTLRLEDNRFT 176
            P L+ L L+ N   
Sbjct: 532 CPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.0 bits (129), Expect = 1e-07
 Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 25/136 (18%)

Query: 79  DLTGPAEVLSRLTQLRLL---------SLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGT 129
            L    E L   + L+ +          L++  L  +++    +  ++ L+L+H   T  
Sbjct: 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV- 455

Query: 130 FPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT-----GTLYSVNS 184
               +  L  +  +DLSHN     +P   L  L  L  L+  DN          L  +  
Sbjct: 456 -LCHLEQLLLVTHLDLSHNRLR-ALP-PALAALRCLEVLQASDNALENVDGVANLPRLQ- 511

Query: 185 SSRSILDFNVSNNQLS 200
                 +  + NN+L 
Sbjct: 512 ------ELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 8/130 (6%)

Query: 75  LEDLDLTGPAEVLSRLTQLR----LLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTF 130
           L++L+      +L+ +  +R    LL  K  L   S L         +L    ++F    
Sbjct: 374 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN 433

Query: 131 PSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSIL 190
                    +R + L+H      +    L +L  +  L L  NR    L    ++ R + 
Sbjct: 434 SVLKMEYADVRVLHLAHKDLT-VLC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLE 489

Query: 191 DFNVSNNQLS 200
               S+N L 
Sbjct: 490 VLQASDNALE 499

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.8 bits (171), Expect = 9e-13
 Identities = 27/110 (24%), Positives = 40/110 (36%), Gaps = 11/110 (10%)

Query: 75  LEDLDLTG-------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFT 127
           L  LDL                L+ LR L+L    L     NL+    L  L LS N  +
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLS 220

Query: 128 GTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT 176
                G    L HL+++ +  +  +  I       L +L+ + L  N  T
Sbjct: 221 -AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 12/107 (11%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFT 127
           L  L+L        P   L+ L +L  L L  N LS+    +     HL+ L++  ++  
Sbjct: 187 LRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

Query: 128 GTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDN 173
                    +L+ L  ++L+HN     +P    T L +L  + L  N
Sbjct: 245 -VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.9 bits (148), Expect = 6e-10
 Identities = 33/181 (18%), Positives = 62/181 (34%), Gaps = 47/181 (25%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS------------SNLNLSSW--- 113
           L  L+L        P      L++L+ L L+NN + S              L+L      
Sbjct: 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL 173

Query: 114 -----------PHLKHLYLSHNRFT--GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELT 160
                       +L++L L+              + L  L  +DLS N     I      
Sbjct: 174 SYISEGAFEGLSNLRYLNLAMCNLREIPNL----TPLIKLDELDLSGNHLS-AIRPGSFQ 228

Query: 161 RLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKN 220
            L +L  L +  ++      +   + +S+++ N+++N L+  +P          F    +
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPH-------DLFTPLHH 280

Query: 221 L 221
           L
Sbjct: 281 L 281

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 33/140 (23%), Positives = 51/140 (36%), Gaps = 30/140 (21%)

Query: 54  CFDSWRGVTCNPSTHRVIKLV-------LEDLDLTG------PAEVLSRLTQLRLLSLKN 100
           C + +  V C     + ++ V          L+L               L  L +L L  
Sbjct: 41  CSNQFSKVICV---RKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR 97

Query: 101 NLLSS------SNLNLSSWPHLKHLYLSHNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGE 153
           N + +      + L      +L  L L  NR T T P+G    L  L+ + L +N  E  
Sbjct: 98  NHIRTIEIGAFNGL-----ANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-S 150

Query: 154 IPMTELTRLPNLLTLRLEDN 173
           IP     R+P+L  L L + 
Sbjct: 151 IPSYAFNRIPSLRRLDLGEL 170

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 30/121 (24%), Positives = 43/121 (35%), Gaps = 14/121 (11%)

Query: 106 SNLNLSSWP-----HLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELT 160
              NL   P     + + L L  N+      +    LRHL  + LS N     I +    
Sbjct: 51  VRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFN 109

Query: 161 RLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKN 220
            L NL TL L DNR T            + +  + NN +   IP+        +F    +
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPS-------YAFNRIPS 161

Query: 221 L 221
           L
Sbjct: 162 L 162

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 68.4 bits (168), Expect = 9e-13
 Identities = 61/316 (19%), Positives = 103/316 (32%), Gaps = 85/316 (26%)

Query: 339 ELLGKGCVGATYKVVLDGGD------VVVVKRIRERKKKREVDEWLR------VIGGLRH 386
           + LG+G  G   +    G D       V VK ++E     E    +        IG   H
Sbjct: 33  KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG--HH 90

Query: 387 SNIVSIRAYCNGKDE-LFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKR----------- 434
            N+V++   C      L ++ ++   G+L + L   R          +            
Sbjct: 91  LNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHL 150

Query: 435 LKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA 494
           +  +   AKG+ FL         H  L++ NI++ +     I D G+ +  +     +  
Sbjct: 151 ICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYK----DPD 203

Query: 495 YN------------APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL 541
           Y             APE +          R +  + DV+SFGV+L EI +         L
Sbjct: 204 YVRKGDARLPLKWMAPETIFD--------RVYTIQSDVWSFGVLLWEIFS---------L 246

Query: 542 GIVKWVQMMGQDESAWEVFDFELI----MDK------EMEEEMRALLQVALLCLAPLPKD 591
           G   +  +    +   E     L     M        EM + M         C    P  
Sbjct: 247 GASPYPGV----KIDEEFCRR-LKEGTRMRAPDYTTPEMYQTMLD-------CWHGEPSQ 294

Query: 592 RPNMSIVHRMIEDIRT 607
           RP  S +   + ++  
Sbjct: 295 RPTFSELVEHLGNLLQ 310

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 70.0 bits (171), Expect = 1e-12
 Identities = 65/287 (22%), Positives = 112/287 (39%), Gaps = 56/287 (19%)

Query: 341 LGKGCVGATYKVVL--DGGDVVV-VKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRA 394
           LG G  G+  + V       + V +K +++  +K + +E +R   ++  L +  IV +  
Sbjct: 344 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 403

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA 454
            C   + L LV +    G LH  L G R      +  +   +L    + G+ +L    + 
Sbjct: 404 VCQ-AEALMLVMEMAGGGPLHKFLVGKREE----IPVSNVAELLHQVSMGMKYL---EEK 455

Query: 455 HLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN------------APE-LK 501
           +  H +L++ N+++     A ISD G+ +        +  Y             APE + 
Sbjct: 456 NFVHRNLAARNVLLVNRHYAKISDFGLSKALGAD---DSYYTARSAGKWPLKWYAPECIN 512

Query: 502 FNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFD 561
           F        RKF  R DV+S+GV + E L+          G   + +M G      EV  
Sbjct: 513 F--------RKFSSRSDVWSYGVTMWEALS---------YGQKPYKKMKGP-----EVMA 550

Query: 562 FELIMDKEMEEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
           F +   K ME        L  +   C     +DRP+   V + +   
Sbjct: 551 F-IEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 596

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 68.0 bits (167), Expect = 1e-12
 Identities = 63/297 (21%), Positives = 105/297 (35%), Gaps = 58/297 (19%)

Query: 332 DLLKSSAELLGKGCVGATYKVVLDGGDV---VVVKRIRE-RKKKREVDEWLR---VIGGL 384
            LL    + LG G  G   K       V   V VK ++         DE L    V+  L
Sbjct: 16  KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQL 75

Query: 385 RHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKG 444
            +  IV +   C   +   LV +    G L+  L  +R      V     ++L    + G
Sbjct: 76  DNPYIVRMIGICE-AESWMLVMEMAELGPLNKYLQQNR-----HVKDKNIIELVHQVSMG 129

Query: 445 LAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN-------- 496
           + +L    +++  H  L++ N+++     A ISD G+ +         + Y         
Sbjct: 130 MKYL---EESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRAD---ENYYKAQTHGKWP 183

Query: 497 ----APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMG 551
               APE + +         KF  + DV+SFGV++ E  +          G   +  M G
Sbjct: 184 VKWYAPECINY--------YKFSSKSDVWSFGVLMWEAFS---------YGQKPYRGMKG 226

Query: 552 QDESAWEVFDFELIMDKEMEEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
                 EV    L   + M       R +  +  LC     ++RP  + V   + + 
Sbjct: 227 S-----EVTAM-LEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 277

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 68.0 bits (167), Expect = 1e-12
 Identities = 64/290 (22%), Positives = 110/290 (37%), Gaps = 58/290 (20%)

Query: 341 LGKGCVGATYKVVL--DGGDVVV-VKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRA 394
           LG G  G+  + V       + V +K +++  +K + +E +R   ++  L +  IV +  
Sbjct: 18  LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 77

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA 454
            C   + L LV +    G LH  L G R      +  +   +L    + G+ +L    + 
Sbjct: 78  VCQ-AEALMLVMEMAGGGPLHKFLVGKREE----IPVSNVAELLHQVSMGMKYL---EEK 129

Query: 455 HLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN------------APE-LK 501
           +  H  L++ N+++     A ISD G+ +        +  Y             APE + 
Sbjct: 130 NFVHRDLAARNVLLVNRHYAKISDFGLSKALGAD---DSYYTARSAGKWPLKWYAPECIN 186

Query: 502 FNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFD 561
           F        RKF  R DV+S+GV + E L+          G   + +M G      EV  
Sbjct: 187 F--------RKFSSRSDVWSYGVTMWEALS---------YGQKPYKKMKGP-----EV-- 222

Query: 562 FELIMDKE-MEEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT 607
              I   + ME        L  +   C     +DRP+   V + +     
Sbjct: 223 MAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYY 272

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 68.0 bits (167), Expect = 1e-12
 Identities = 60/318 (18%), Positives = 102/318 (32%), Gaps = 82/318 (25%)

Query: 339 ELLGKGCVG----ATYKVVLDGGDV--VVVKRIRERKKKREVDEWLR------VIGGLRH 386
           + LG G  G    AT   ++       V VK ++      E +  +        +G   H
Sbjct: 29  KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLG--NH 86

Query: 387 SNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKR------------ 434
            NIV++   C       ++ +Y  +G L + L   R                        
Sbjct: 87  MNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLED 146

Query: 435 -LKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFIND 493
            L  +   AKG+AFL      +  H  L++ NI++       I D G+ +        + 
Sbjct: 147 LLSFSYQVAKGMAFL---ASKNCIHRDLAARNILLTHGRITKICDFGLARDIKN----DS 199

Query: 494 AYN------------APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL 541
            Y             APE  FN         +    DV+S+G+ L E+ +         L
Sbjct: 200 NYVVKGNARLPVKWMAPESIFN-------CVYTFESDVWSYGIFLWELFS---------L 243

Query: 542 GIVKWVQMMGQDESAWEVFDFEL---IMDK------EMEEEMRALLQVALLCLAPLPKDR 592
           G   +  M        + +        M        EM + M+        C    P  R
Sbjct: 244 GSSPYPGMPVDS----KFYKMIKEGFRMLSPEHAPAEMYDIMKT-------CWDADPLKR 292

Query: 593 PNMSIVHRMIEDIRTKGS 610
           P    + ++IE   ++ +
Sbjct: 293 PTFKQIVQLIEKQISEST 310

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 60/326 (18%), Positives = 122/326 (37%), Gaps = 88/326 (26%)

Query: 339 ELLGKGCVGATYK-----VVLDGGDVVV-VKRIRERKKKREVDEWLR---VIGGLRHSNI 389
             +G+G  G  ++     ++      +V VK ++E        ++ R   ++    + NI
Sbjct: 53  RDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNI 112

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKR--------------- 434
           V +   C     + L+++Y+ +G L+  L          +  +                 
Sbjct: 113 VKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLS 172

Query: 435 ----LKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFF 490
               L +A   A G+A+L   ++    H  L++ N +V +     I+D G+ +  ++   
Sbjct: 173 CAEQLCIARQVAAGMAYL---SERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYS--- 226

Query: 491 INDAYN------------APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKG 537
             D Y              PE + +         ++    DV+++GVVL EI +      
Sbjct: 227 -ADYYKADGNDAIPIRWMPPESIFY--------NRYTTESDVWAYGVVLWEIFS------ 271

Query: 538 DGELGIVKWVQMMGQDESAWEVFDFEL---IMDK------EMEEEMRALLQVALLCLAPL 588
               G+  +  M     +  EV  +     I+        E+   MR        C + L
Sbjct: 272 ---YGLQPYYGM-----AHEEVIYYVRDGNILACPENCPLELYNLMRL-------CWSKL 316

Query: 589 PKDRPNMSIVHRMIEDI--RTKGSID 612
           P DRP+   +HR+++ +  R +G++ 
Sbjct: 317 PADRPSFCSIHRILQRMCERAEGTVG 342

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 26/139 (18%), Positives = 45/139 (32%), Gaps = 18/139 (12%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS------SNLNLSSWPHLKHLYLS 122
           L+ L LT         +  S L  L  L L  N LS+        L       L  L L 
Sbjct: 78  LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPL-----SSLTFLNLL 132

Query: 123 HNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYS 181
            N +     + + S L  L+ + + +     +I   +   L  L  L ++ +        
Sbjct: 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192

Query: 182 VNSSSRSILDFNVSNNQLS 200
              S +++    +   Q  
Sbjct: 193 SLKSIQNVSHLILHMKQHI 211

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 15/117 (12%), Positives = 39/117 (33%), Gaps = 17/117 (14%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLN---------LSSWPHLKHL 119
           +  L L            +   + +  L L++  L + + +         L      +++
Sbjct: 200 VSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259

Query: 120 YLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT 176
            ++           ++ +  L  ++ S N  +  +P     RL +L  + L  N + 
Sbjct: 260 KITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 17/118 (14%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFT 127
           LE+L++          + L  +  +  L L          + +     ++ L L      
Sbjct: 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235

Query: 128 GT----FPSGVSS----LRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTG 177
                   +G ++        R V ++  +    + +  L ++  LL L    N+   
Sbjct: 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL--LNQISGLLELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 11/91 (12%)

Query: 68  HRVIKLVLEDLDL---------TGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKH 118
             V  L L D DL         TG    L +    R + + +  L      L+    L  
Sbjct: 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE 281

Query: 119 LYLSHNRFTGTFPSGV-SSLRHLRRVDLSHN 148
           L  S N+   + P G+   L  L+++ L  N
Sbjct: 282 LEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 80  LTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWP-----HLKHLYLSHNRFTGTFPSGV 134
           ++   E  S    L      N +   S+ +L+S P      +K L LS+NR T    +  
Sbjct: 15  ISLSKEESSNQASLSCDR--NGICKGSSGSLNSIPSGLTEAVKSLDLSNNRIT-YISNSD 71

Query: 135 -SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT 176
                +L+ + L+ N     I     + L +L  L L  N  +
Sbjct: 72  LQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS 113

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 87  LSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS 146
           ++  TQL LL  +   ++   L+LS  P L +LYL++   T      VS    L+ +   
Sbjct: 293 VTHNTQLYLLDCQAAGITE--LDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCV 347

Query: 147 HNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS 200
           +   + +     + ++P L      + +         +++   L   VS + L 
Sbjct: 348 NAHIQ-DFS--SVGKIPALNNNFEAEGQTITMPKETLTNNS--LTIAVSPDLLD 396

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 14/131 (10%)

Query: 72  KLVLEDLDLTGPAEV-LSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTF 130
             V    ++     +   +L  L  L   N+ ++     +     L  L  + N  T T 
Sbjct: 22  SEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNIT-TL 79

Query: 131 PSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSIL 190
              +S   +L  +    N    ++   ++T L  L  L  + N+ T     ++ S   +L
Sbjct: 80  D--LSQNTNLTYLACDSN----KLTNLDVTPLTKLTYLNCDTNKLT----KLDVSQNPLL 129

Query: 191 -DFNVSNNQLS 200
              N + N L+
Sbjct: 130 TYLNCARNTLT 140

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 14/119 (11%)

Query: 87  LSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS 146
           + +LT L  L   +N +++  L+LS   +L +L    N+ T      V+ L  L  ++  
Sbjct: 60  IEKLTGLTKLICTSNNITT--LDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCD 114

Query: 147 HNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVN-SSSRSILDFNVSNNQLSGQIP 204
            N    ++   ++++ P L  L    N  T     ++ S +  + + +   N+   ++ 
Sbjct: 115 TN----KLTKLDVSQNPLLTYLNCARNTLT----EIDVSHNTQLTELDCHLNKKITKLD 165

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 13/115 (11%)

Query: 87  LSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS 146
           +S  TQL  L    N   +  L+++    L  L  S N+ T      VS  + L R++  
Sbjct: 144 VSHNTQLTELDCHLNKKITK-LDVTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCD 199

Query: 147 HNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSS-RSILDFNVSNNQLS 200
            N     I   +L +   L  L    N+ T     ++ +    +  F+ S N L+
Sbjct: 200 TN----NITKLDLNQNIQLTFLDCSSNKLT----EIDVTPLTQLTYFDCSVNPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 17/112 (15%), Positives = 41/112 (36%), Gaps = 13/112 (11%)

Query: 90  LTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNA 149
                  + +     +  ++      L  L   ++  T    +G+  L  L ++  + N 
Sbjct: 20  FASEVAAAFEMQATDT--ISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSN- 74

Query: 150 YEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVN-SSSRSILDFNVSNNQLS 200
               I   +L++  NL  L  + N+ T    +++ +    +   N   N+L+
Sbjct: 75  ---NITTLDLSQNTNLTYLACDSNKLT----NLDVTPLTKLTYLNCDTNKLT 119

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 13/115 (11%)

Query: 87  LSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS 146
           ++ LTQL       N L+   L++S+   L  L+             ++    L      
Sbjct: 229 VTPLTQLTYFDCSVNPLTE--LDVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAE 283

Query: 147 HNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVN-SSSRSILDFNVSNNQLS 200
                 +I   ++T    L  L  +    T     ++ S +  ++   ++N +L+
Sbjct: 284 GC---RKIKELDVTHNTQLYLLDCQAAGIT----ELDLSQNPKLVYLYLNNTELT 331

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 41/220 (18%), Positives = 73/220 (33%), Gaps = 41/220 (18%)

Query: 339 ELLGKGC--VGATYKVV-LDGGDVVVVKRIR-ERKKKREVDEWLR---VIGGLRHSNIVS 391
            ++GKG   +           G+ V V+RI  E      V        V     H NIV 
Sbjct: 31  TVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIV- 89

Query: 392 IRAYCN--GKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLAS---DSAKGLA 446
                     +EL++V  ++ +GS   L+  +     M         +A       K L 
Sbjct: 90  -PYRATFIADNELWVVTSFMAYGSAKDLIC-THFMDGMNELA-----IAYILQGVLKALD 142

Query: 447 FLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-HQLFHT-----------PFFINDA 494
           ++H        H  + +S+I++   G   +S +     +               + +   
Sbjct: 143 YIHHMGY---VHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVL 199

Query: 495 Y-NAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
              +PE+   N   Y  +      D+YS G+   E+  G 
Sbjct: 200 PWLSPEVLQQNLQGYDAK-----SDIYSVGITACELANGH 234

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 11/110 (10%)

Query: 75  LEDLDLTG-------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFT 127
           L  LDL                L  L+ L+L    +     NL+    L+ L +S N F 
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFP 231

Query: 128 GTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT 176
                G    L  L+++ + ++     I       L +L+ L L  N  +
Sbjct: 232 -EIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 5e-11
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 12/107 (11%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFT 127
           L+ L+L        P   L+ L  L  L +  N        +      LK L++ +++ +
Sbjct: 198 LKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 128 GTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDN 173
                     L  L  ++L+HN     +P    T L  L+ L L  N
Sbjct: 256 -LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 35/181 (19%), Positives = 64/181 (35%), Gaps = 47/181 (25%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS------------SNLNLSSW--- 113
           L  L+L        P+     L++LR L L+NN + S              L+L      
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL 184

Query: 114 -----------PHLKHLYLSHNRFT--GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELT 160
                       +LK+L L               + L  L  +++S N +  EI      
Sbjct: 185 EYISEGAFEGLFNLKYLNLGMCNIKDMPNL----TPLVGLEELEMSGNHFP-EIRPGSFH 239

Query: 161 RLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKN 220
            L +L  L + +++ +    +      S+++ N+++N LS  +P          F   + 
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPH-------DLFTPLRY 291

Query: 221 L 221
           L
Sbjct: 292 L 292

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 35/140 (25%), Positives = 49/140 (35%), Gaps = 30/140 (21%)

Query: 54  CFDSWRGVTCNPSTHRVIKLV-------LEDLDLTG------PAEVLSRLTQLRLLSLKN 100
           C + +  V C     R +  V          L+L         A+    L  L +L L  
Sbjct: 52  CSNQFSKVVCT---RRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR 108

Query: 101 NLLSS------SNLNLSSWPHLKHLYLSHNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGE 153
           N +        + L       L  L L  N  T   PSG    L  LR + L +N  E  
Sbjct: 109 NSIRQIEVGAFNGL-----ASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-S 161

Query: 154 IPMTELTRLPNLLTLRLEDN 173
           IP     R+P+L+ L L + 
Sbjct: 162 IPSYAFNRVPSLMRLDLGEL 181

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 22/125 (17%)

Query: 106 SNLNLSSWP-----HLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELT 160
           +   LS  P     + ++L L  N            L HL  + L  N+   +I +    
Sbjct: 62  TRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFN 120

Query: 161 RLPNLLTLRLEDNRFT----GTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFA 216
            L +L TL L DN  T    G    +      + +  + NN +   IP+        +F 
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYL----SKLRELWLRNNPIE-SIPS-------YAFN 168

Query: 217 GNKNL 221
              +L
Sbjct: 169 RVPSL 173

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 60/298 (20%), Positives = 105/298 (35%), Gaps = 68/298 (22%)

Query: 339 ELLGKGCVGATYKVVLDGGDV----VVVKRIRE--RKKKREVDEWLR---VIGGLRHSNI 389
           E LG G  G   +   D        V VK ++     +   +D+++R    +  L H N+
Sbjct: 24  EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNL 83

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMP--VDWNKRLKLASDSAKGLAF 447
           + +         + +V +  P GSL   L   +G   +     +      A   A+G+ +
Sbjct: 84  IRLYGVVLT-PPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRY------AVQVAEGMGY 136

Query: 448 LHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN----------- 496
           L         H  L++ N+++       I D G+ +        +D Y            
Sbjct: 137 LE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQN---DDHYVMQEHRKVPFAW 190

Query: 497 -APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDE 554
            APE LK         R F    D + FGV L E+ T          G   W+ + G   
Sbjct: 191 CAPESLKT--------RTFSHASDTWMFGVTLWEMFT---------YGQEPWIGLNGS-- 231

Query: 555 SAWEVFDFELIMDKE---MEEEM---RALLQVALLCLAPLPKDRPNMSIVHRMIEDIR 606
              ++      +DKE   +       + +  V + C A  P+DRP    +   + + +
Sbjct: 232 ---QILHK---IDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQ 283

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 42/227 (18%), Positives = 77/227 (33%), Gaps = 46/227 (20%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRA 394
           + LG+G  G  ++           +KRIR   ++   ++ +R    +  L H  IV    
Sbjct: 11  QCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFN 70

Query: 395 YCNGKDE------------LFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSA 442
               K+             L++        +L   ++G         + +  L +    A
Sbjct: 71  AWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRC--TIEERERSVCLHIFLQIA 128

Query: 443 KGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-------HQLFHTPFFINDA- 494
           + + FLH      L H  L  SNI         + D G+        +       +    
Sbjct: 129 EAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYA 185

Query: 495 ----------YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
                     Y +PE    + N+YS      + D++S G++L E+L 
Sbjct: 186 RHTGQVGTKLYMSPEQI--HGNSYS-----HKVDIFSLGLILFELLY 225

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.3 bits (165), Expect = 5e-12
 Identities = 32/148 (21%), Positives = 46/148 (31%), Gaps = 34/148 (22%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS----------SNLNLSSWP---- 114
           LE L  +       P      L  L + +     LS           SN  L   P    
Sbjct: 93  LESLVASCNSLTELPEL-PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQN 151

Query: 115 --HLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLED 172
              LK + + +N      P    SL  +      +N  E E+P  EL  LP L  +  ++
Sbjct: 152 SSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLE-ELP--ELQNLPFLTAIYADN 204

Query: 173 NRFTGTLYSVNSSSRSILDFNVSNNQLS 200
           N        +     S+      NN L 
Sbjct: 205 NSLK----KLPDLPLSLESIVAGNNILE 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 36/170 (21%), Positives = 54/170 (31%), Gaps = 47/170 (27%)

Query: 72  KLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSS-----NLNLS---------SWPHLK 117
            L + D  LT   E+   LT L +     + LS        LN S           P L+
Sbjct: 261 ALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLE 320

Query: 118 HLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLP----NLLTLRLEDN 173
            L +S+N+     P+    L  L     S N          L  +P    NL  L +E N
Sbjct: 321 ELNVSNNKLI-ELPALPPRLERL---IASFN---------HLAEVPELPQNLKQLHVEYN 367

Query: 174 RFT------GTLYS--VNSSSRSILDF-------NVSNNQLSGQIPAWMS 208
                     ++    +NS    + +        +V  N L  + P    
Sbjct: 368 PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPE 416

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 40/139 (28%), Positives = 56/139 (40%), Gaps = 22/139 (15%)

Query: 72  KLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSW-PHLKHLYLSHNRFTGTF 130
            +V  +  L    E L  L  L  +   NNLL +    L    P L+ L +  N  T   
Sbjct: 219 SIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT----LPDLPPSLEALNVRDNYLT-DL 272

Query: 131 PSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLP-NLLTLRLEDNRFTGTLYSVNSSSRSI 189
           P    SL  L   D+S N +      + L+ LP NL  L    N       S+     S+
Sbjct: 273 PELPQSLTFL---DVSENIF------SGLSELPPNLYYLNASSNEIR----SLCDLPPSL 319

Query: 190 LDFNVSNNQLSGQIPAWMS 208
            + NVSNN+L  ++PA   
Sbjct: 320 EELNVSNNKLI-ELPALPP 337

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.6 bits (158), Expect = 4e-11
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 15/136 (11%)

Query: 75  LEDLDLTGPA--EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPS 132
           L+ +D+   +  ++      L  ++  NN L      L + P L  +Y  +N      P 
Sbjct: 155 LKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK-KLPD 212

Query: 133 GVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDF 192
              SL  +      +N  E E+P  EL  LP L T+  ++N       ++     S+   
Sbjct: 213 LPLSLESI---VAGNNILE-ELP--ELQNLPFLTTIYADNNLLK----TLPDLPPSLEAL 262

Query: 193 NVSNNQLSGQIPAWMS 208
           NV +N L+  +P    
Sbjct: 263 NVRDNYLT-DLPELPQ 277

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 34/147 (23%), Positives = 50/147 (34%), Gaps = 19/147 (12%)

Query: 64  NPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNL-SSWPHLKHLYLS 122
           +           E  ++           Q   L L N  LSS    L    PHL+ L  S
Sbjct: 44  SEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS----LPELPPHLESLVAS 99

Query: 123 HNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLT-LRLEDNRFTGTLYS 181
            N  T   P    SL+ L   + +            L+ LP LL  L + +N+    L  
Sbjct: 100 CNSLT-ELPELPQSLKSLLVDNNNLK---------ALSDLPPLLEYLGVSNNQLE-KL-P 147

Query: 182 VNSSSRSILDFNVSNNQLSGQIPAWMS 208
              +S  +   +V NN L  ++P    
Sbjct: 148 ELQNSSFLKIIDVDNNSLK-KLPDLPP 173

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 25/153 (16%), Positives = 51/153 (33%), Gaps = 45/153 (29%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWP-HLKHLYLSHNRFT 127
           LE+L+++       PA       +L  L    N L+     +   P +LK L++ +N   
Sbjct: 319 LEELNVSNNKLIELPAL----PPRLERLIASFNHLAE----VPELPQNLKQLHVEYNPLR 370

Query: 128 GTFPSGVSSLR----------------HLRRVDLSHNAYEGEIPMTELTRLPNLLT---- 167
             FP    S+                 +L+++ +  N          L   P++      
Sbjct: 371 -EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN---------PLREFPDIPESVED 420

Query: 168 LRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS 200
           LR+   R        + ++  + D    ++   
Sbjct: 421 LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 27/132 (20%)

Query: 90  LTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLR----------- 138
            T L+     ++ L+   +   +       Y + + +    P G    R           
Sbjct: 10  NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 139 --HLRRVDLSHNAYEGEIPMTELTRLP----NLLTLRLEDNRFTGTLYSVNSSSRSILDF 192
                 ++L++           L+ LP    +L +L    N  T  L  +  S +S+L  
Sbjct: 70  DRQAHELELNNL---------GLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVD 119

Query: 193 NVSNNQLSGQIP 204
           N +   LS   P
Sbjct: 120 NNNLKALSDLPP 131

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 66.1 bits (162), Expect = 5e-12
 Identities = 45/213 (21%), Positives = 81/213 (38%), Gaps = 43/213 (20%)

Query: 340 LLGKGCVGATYKVV-LDGGDVVVVKRIR---------ERKKKREVDEWLRVIGGLRHSNI 389
            LGKG  G  Y         ++ +K +          E + +REV     +   LRH NI
Sbjct: 16  PLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV----EIQSHLRHPNI 71

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH 449
           + +  Y +    ++L+ +Y P G+++  L   +   +            ++ A  L++ H
Sbjct: 72  LRLYGYFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTAT--YITELANALSYCH 126

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIG--VHQLFH-------TPFFINDAYNAPEL 500
                 + H  +   N+++   G   I+D G  VH           T       Y  PE+
Sbjct: 127 ---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTL-----DYLPPEM 178

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
                  +      ++ D++S GV+  E L GK
Sbjct: 179 I--EGRMHD-----EKVDLWSLGVLCYEFLVGK 204

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 7e-12
 Identities = 27/141 (19%), Positives = 61/141 (43%), Gaps = 10/141 (7%)

Query: 72  KLVLEDLDLTG----PAEVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRF 126
            + +++  ++G         S+++    L   NNLL+ +   N      L+ L L  N+ 
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

Query: 127 T--GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNS 184
                     + ++ L+++D+S N+   +    + +   +LL+L +  N  T T++    
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420

Query: 185 SSRSILDFNVSNNQLSGQIPA 205
               +LD  + +N++   IP 
Sbjct: 421 PRIKVLD--LHSNKIK-SIPK 438

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 10/108 (9%)

Query: 75  LEDLDL-------TGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFT 127
           L+ LD+              S    L  L++ +N+L+ +       P +K L L  N+  
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHSNKIK 434

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRF 175
            + P  V  L  L+ ++++ N  +  +P     RL +L  + L  N +
Sbjct: 435 -SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 33/195 (16%), Positives = 70/195 (35%), Gaps = 8/195 (4%)

Query: 12  FCLFSLCLSNSPYSD--ISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTHR 69
             L +L L+N   +      +L      T    S+S+        F  +     +     
Sbjct: 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279

Query: 70  VIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWP-HLKHLYLSHNRFTG 128
           + ++V +       + +    + + + +   +     ++   S      HL  S+N  T 
Sbjct: 280 IHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD 338

Query: 129 TFPSGVSSLRHLRRVDLSHNAYEGEIPMTE--LTRLPNLLTLRLEDNRFTGTLYSVN-SS 185
           T       L  L  + L  N  + E+       T++ +L  L +  N  +      + S 
Sbjct: 339 TVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397

Query: 186 SRSILDFNVSNNQLS 200
           ++S+L  N+S+N L+
Sbjct: 398 TKSLLSLNMSSNILT 412

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 8/100 (8%)

Query: 80  LTGPAEVLSRLTQLRLLSL-KNNLLSSSNLNLSSWP-HLKHLYLSHNRFT-GTFPSGVSS 136
           L+  AE+ +++  L+ L + +N++         SW   L  L +S N  T   F      
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR 422

Query: 137 LRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT 176
           ++ L   DL  N  +  IP  ++ +L  L  L +  N+  
Sbjct: 423 IKVL---DLHSNKIK-SIPK-QVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 12/115 (10%)

Query: 91  TQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFTGTFPSGV-SSLRHLRRVDLSHN 148
            +  +L++  N +S     ++ S   L+ L +SHNR        V    + L  +DLSHN
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN 79

Query: 149 AYEGEIPMTELT--RLPNLLTLRLEDNRFTG-TLYSVNSSSRSILDFNVSNNQLS 200
                  + +++     NL  L L  N F    +     +   +    +S   L 
Sbjct: 80  ------KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 66.7 bits (163), Expect = 8e-12
 Identities = 25/162 (15%), Positives = 47/162 (29%), Gaps = 16/162 (9%)

Query: 75  LEDLDLTG-------PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRF 126
           L+ L +                L+ L +L L  N          +   +L+ L L+    
Sbjct: 56  LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL 115

Query: 127 TGTF-PSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT----GTLY 180
            G          L  L  + L  N  +   P +    +     L L  N+        L 
Sbjct: 116 DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175

Query: 181 SVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLC 222
           +      ++L   +S+  L      W+      +   N ++ 
Sbjct: 176 NFQGKHFTLLR--LSSITLQDMNEYWLGWEKCGNPFKNTSIT 215

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 37/179 (20%), Positives = 60/179 (33%), Gaps = 12/179 (6%)

Query: 8   FFSFFCLFSLCLSNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNP-- 65
            F    + +L LS + + +      F A       SL    +                  
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 66  STHRVIKLVLEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKH 118
           +   +    ++  DL+          V S  T L  L+L  N ++   +       HL  
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327

Query: 119 LYLSHNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT 176
           L LS N    +  S +  +L  L  +DLS+N     +       LPNL  L L+ N+  
Sbjct: 328 LNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 29/114 (25%), Positives = 40/114 (35%), Gaps = 20/114 (17%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS------SNLNLSSWPHLKHLYLS 122
           LE L L               LT L  L+L  N L S       NL       L+ L LS
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL-----DKLEVLDLS 355

Query: 123 HNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRF 175
           +N             L +L+ + L  N  +  +P     RL +L  + L  N +
Sbjct: 356 YNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 12/137 (8%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLN--LSSWPHLKHLYLSHNRF 126
           +  +DL+            SRL  L+ L ++         N        L  L L +N+F
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 127 TGTFPSGV-SSLRHLRRVDLSHNA-YEGEIPMTELTRLPNLLTLRLEDNRFTG-TLYSVN 183
                +G  + L +L  + L+        +       L +L  L L DN        S  
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 184 SSSRSILDFNVSNNQLS 200
            + R     +++ N++ 
Sbjct: 151 LNMRRFHVLDLTFNKVK 167

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 5/114 (4%)

Query: 91  TQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFTGTFPSGV-SSLRHLRRVDLSHN 148
             +  + L  N ++  +  + S    L+ L +          +     L  L  + L +N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 149 AYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNS--SSRSILDFNVSNNQLS 200
            +  ++       L NL  L L      G + S N      S+    + +N + 
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 5/105 (4%)

Query: 106 SNLNLSSWP----HLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTR 161
            N  L   P    H+ ++ LS N       +  S L+ L+ + +        I       
Sbjct: 18  INRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG 77

Query: 162 LPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQL-SGQIPA 205
           L +L+ L+L+ N+F        +   ++    ++   L    +  
Sbjct: 78  LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG 122

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 65.8 bits (161), Expect = 9e-12
 Identities = 60/327 (18%), Positives = 105/327 (32%), Gaps = 95/327 (29%)

Query: 339 ELLGKGCVG----ATYKVVLDGGDV--VVVKRIRERKKKREVDEWLR------VIGGLRH 386
           ++LG G  G    AT   +   G    V VK ++E+    E +  +        +G   H
Sbjct: 51  KVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLG--SH 108

Query: 387 SNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKR------------ 434
            NIV++   C     ++L+++Y  +G L + L   R          +             
Sbjct: 109 ENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNV 168

Query: 435 ------LKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIG----VHQL 484
                 L  A   AKG+ FL         H  L++ N++V       I D G    +   
Sbjct: 169 LTFEDLLCFAYQVAKGMEFL---EFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMS- 224

Query: 485 FHTPFFINDAYN------------APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
                  +  Y             APE  F          +  + DV+S+G++L EI + 
Sbjct: 225 -------DSNYVVRGNARLPVKWMAPESLFE-------GIYTIKSDVWSYGILLWEIFS- 269

Query: 533 KMAKGDGELGIVKWVQMMGQDESAWEVFDFEL---IMDK------EMEEEMRALLQVALL 583
                   LG+  +  +          +        MD+      E+   M++       
Sbjct: 270 --------LGVNPYPGI----PVDANFYKLIQNGFKMDQPFYATEEIYIIMQS------- 310

Query: 584 CLAPLPKDRPNMSIVHRMIEDIRTKGS 610
           C A   + RP+   +   +        
Sbjct: 311 CWAFDSRKRPSFPNLTSFLGCQLADAE 337

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 65.8 bits (161), Expect = 9e-12
 Identities = 68/314 (21%), Positives = 112/314 (35%), Gaps = 78/314 (24%)

Query: 339 ELLGKGCVGATYKVVLDGGD------VVVVKRIRERKKKREVDEWLR---VIGGLRHSNI 389
             LG+G  G  +              +V VK ++E   +    ++ R   ++  L+H +I
Sbjct: 47  WELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKE-ASESARQDFQREAELLTMLQHQHI 105

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKR----------LKLAS 439
           V     C     L +V++Y+ HG L+  L       ++                 L +AS
Sbjct: 106 VRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVAS 165

Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYN--- 496
             A G+ +L      H  H  L++ N +V Q     I D G+ +  ++     D Y    
Sbjct: 166 QVAAGMVYL---AGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYS----TDYYRVGG 218

Query: 497 ---------APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKW 546
                     PE + +        RKF    DV+SFGVVL EI T          G   W
Sbjct: 219 RTMLPIRWMPPESILY--------RKFTTESDVWSFGVVLWEIFT---------YGKQPW 261

Query: 547 VQMMGQDESAWEVFDFEL---IMDK------EMEEEMRALLQVALLCLAPLPKDRPNMSI 597
            Q+     S  E  D       +++      E+   MR        C    P+ R ++  
Sbjct: 262 YQL-----SNTEAIDCITQGRELERPRACPPEVYAIMRG-------CWQREPQQRHSIKD 309

Query: 598 VHRMIEDIRTKGSI 611
           VH  ++ +     +
Sbjct: 310 VHARLQALAQAPPV 323

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 1/110 (0%)

Query: 64  NPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSH 123
            P+  R + L     +      + +    L  LSL N  L S + NL   P LK L LS 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS-NLPKLPKLKKLELSE 80

Query: 124 NRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDN 173
           NR  G        L +L  ++LS N  +    +  L +L  L +L L + 
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 10/108 (9%)

Query: 96  LSLKNNL-LSSSNLNLSSWPHLKHLYLSHNRFT-GTFPSGVSSLRHLRRVDLSHNAYEGE 153
           + +K  + L   N   ++   ++ L L + +   G      +   +L  + L +      
Sbjct: 8   MDMKRRIHLELRNRTPAA---VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV----G 60

Query: 154 IPMTE-LTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS 200
           +     L +LP L  L L +NR  G L  +     ++   N+S N+L 
Sbjct: 61  LISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 56/313 (17%), Positives = 106/313 (33%), Gaps = 86/313 (27%)

Query: 339 ELLGKGCVG----ATYKVVLDGGDV--VVVKRIRERKKKREVDEWLR------VIGGLRH 386
           + LG G  G    AT   +     V  V VK ++      E +  +        +G  +H
Sbjct: 52  KTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLG--QH 109

Query: 387 SNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKR---------LKL 437
            NIV++   C     + ++ +Y  +G L + L            +            L  
Sbjct: 110 ENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHF 169

Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIG----VHQLFHTPFFIND 493
           +S  A+G+AFL      +  H  +++ N+++     A I D G    +          + 
Sbjct: 170 SSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMN--------DS 218

Query: 494 AYN------------APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL 541
            Y             APE  F+         +  + DV+S+G++L EI +         L
Sbjct: 219 NYIVKGNARLPVKWMAPESIFD-------CVYTVQSDVWSYGILLWEIFS---------L 262

Query: 542 GIVKWVQMMGQDESAWEVFDFEL---IMDK------EMEEEMRALLQVALLCLAPLPKDR 592
           G+  +  ++       + +        M +       +   M+A       C A  P  R
Sbjct: 263 GLNPYPGIL----VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQA-------CWALEPTHR 311

Query: 593 PNMSIVHRMIEDI 605
           P    +   +++ 
Sbjct: 312 PTFQQICSFLQEQ 324

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 66.6 bits (162), Expect = 1e-11
 Identities = 51/219 (23%), Positives = 77/219 (35%), Gaps = 40/219 (18%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSI-- 392
           E LG G  G   + +  D G+ V +K+ R+    +  + W     ++  L H N+VS   
Sbjct: 20  ERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSARE 79

Query: 393 ----RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFL 448
                      D   L  +Y   G L   L+       +         L SD +  L +L
Sbjct: 80  VPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEG--PIRTLLSDISSALRYL 137

Query: 449 HGYNKAHLFHGHLSSSNIVVDQLGNAC---ISDIGVHQLFH----------TPFFINDAY 495
           H   +  + H  L   NIV+          I D+G  +             T       Y
Sbjct: 138 H---ENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTL-----QY 189

Query: 496 NAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM 534
            APEL         Q+K+    D +SFG +  E +TG  
Sbjct: 190 LAPEL-------LEQKKYTVTVDYWSFGTLAFECITGFR 221

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 60/338 (17%), Positives = 105/338 (31%), Gaps = 57/338 (16%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRA 394
           ++LG+G     ++      GD+  +K        R VD  +R   V+  L H NIV + A
Sbjct: 15  DILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFA 74

Query: 395 Y--CNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
                      L+ ++ P GSL+++L        +P    + L +  D   G+  L    
Sbjct: 75  IEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPES--EFLIVLRDVVGGMNHLRENG 132

Query: 453 KAH---------LFHGHLSSSNI-VVDQLGNACISDIGVHQLFH----TPFFINDAYNAP 498
             H            G    S   + D  G A   +    + F     T       Y  P
Sbjct: 133 IVHRNIKPGNIMRVIGEDGQSVYKLTD-FGAARELEDD--EQFVSLYGTE-----EYLHP 184

Query: 499 E-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG------------------KMAKGDG 539
           +  +        Q+K+    D++S GV      TG                  K+  G  
Sbjct: 185 DMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKP 244

Query: 540 ELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVAL-LCLAPLPKDRPNMSIV 598
              I        + E+    +  ++ +   +   ++ LL   L   L    +        
Sbjct: 245 SGAISGV----QKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQF 300

Query: 599 HRMIEDIRTKGSIDGCANSIMNNISSDSSPSQSENTYN 636
                DI  +  I       +  +++      S NT  
Sbjct: 301 FAETSDILHRMVIH---VFSLQQMTAHKIYIHSYNTAT 335

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 36/210 (17%)

Query: 339 ELLGKGCVGATYKVVL-DGGDVVVVKRIR----ERKKKREVDEWLRVIGGLRHSNIVSIR 393
             LG G  G  +KV     G V+  K I        + + + E L+V+       IV   
Sbjct: 39  SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRE-LQVLHECNSPYIVGFY 97

Query: 394 -AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
            A+ +   E+ +  +++  GSL  +L   +  GR+P       K++    KGL +L    
Sbjct: 98  GAFYSD-GEISICMEHMDGGSLDQVL---KKAGRIPEQILG--KVSIAVIKGLTYLR--E 149

Query: 453 KAHLFHGHLSSSNIVVDQLGNACISDIGVH-QLFH--------TPFFINDAYNAPELKFN 503
           K  + H  +  SNI+V+  G   + D GV  QL          T       Y +PE    
Sbjct: 150 KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRS-----YMSPERL-- 202

Query: 504 NNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
              +YS +      D++S G+ L+E+  G+
Sbjct: 203 QGTHYSVQ-----SDIWSMGLSLVEMAVGR 227

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 53/307 (17%), Positives = 108/307 (35%), Gaps = 60/307 (19%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRI------RERKKKREVDEWLRVIGGLRHSNIVS 391
            +L +G     Y+   +  G    +KR+      + R   +EV    ++ G   H NIV 
Sbjct: 34  RVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSG---HPNIVQ 90

Query: 392 I-------RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKG 444
                   +   +     FL+   L  G L   L      G +  D    LK+   + + 
Sbjct: 91  FCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCD--TVLKIFYQTCRA 148

Query: 445 LAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIG-VHQLFHTPFFINDA--------- 494
           +  +H   K  + H  L   N+++   G   + D G    + H P +   A         
Sbjct: 149 VQHMH-RQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEE 207

Query: 495 --------YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVK 545
                   Y  PE+     + YS     ++ D+++ G +L  +   +   +   +L IV 
Sbjct: 208 ITRNTTPMYRTPEI----IDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRIVN 263

Query: 546 WVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
                G+         + +           +L++     L   P++R +++ V   +++I
Sbjct: 264 -----GK---------YSIPPHDTQYTVFHSLIRA---MLQVNPEERLSIAEVVHQLQEI 306

Query: 606 RTKGSID 612
               +++
Sbjct: 307 AAARNVN 313

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 1/110 (0%)

Query: 64  NPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSH 123
            PS  + + L     +      +     +L  LS  N  L+S   NL     LK L LS 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-NLPKLNKLKKLELSD 73

Query: 124 NRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDN 173
           NR +G          +L  ++LS N  +    +  L +L NL +L L + 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 115 HLKHLYLSHNRFT-GTFPSGVSSLRHLRRVDLSHNAYEGEIP-MTELTRLPNLLTLRLED 172
            +K L L ++R   G           L  +   +      +  +  L +L  L  L L D
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV----GLTSIANLPKLNKLKKLELSD 73

Query: 173 NRFTGTLYSVNSSSRSILDFNVSNNQLS 200
           NR +G L  +     ++   N+S N++ 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 85  EVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRV 143
             LS +  LR+LSL  NL+    NL+ +    L+ L++S+N+      SG+  L +LR +
Sbjct: 64  SSLSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQIASL--SGIEKLVNLRVL 120

Query: 144 DLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSS 186
            +S+N       + +L  L  L  L L  N         N++S
Sbjct: 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 9/117 (7%)

Query: 85  EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVD 144
            V +   ++ L       +   +  LS+    KHL LS N       S +S + +LR + 
Sbjct: 20  VVATEAEKVEL-HGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILS 76

Query: 145 LSHNAYEGEIPMTELTRLPNLL-TLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS 200
           L  N  +    +  L  + + L  L +  N+   +L  +     ++    +SNN+++
Sbjct: 77  LGRNLIKK---IENLDAVADTLEELWISYNQIA-SLSGI-EKLVNLRVLYMSNNKIT 128

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 31/216 (14%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRA 394
           ++LG+G     ++      GD+  +K        R VD  +R   V+  L H NIV + A
Sbjct: 15  DILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFA 74

Query: 395 Y--CNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
                      L+ ++ P GSL+++L        +P    + L +  D   G+  L    
Sbjct: 75  IEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPES--EFLIVLRDVVGGMNHLRENG 132

Query: 453 KAH---------LFHGHLSSSNI-VVDQLGNACISDIGVHQLFH----TPFFINDAYNAP 498
             H            G    S   + D  G A   +    + F     T       Y  P
Sbjct: 133 IVHRNIKPGNIMRVIGEDGQSVYKLTD-FGAARELEDD--EQFVSLYGTE-----EYLHP 184

Query: 499 E-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           +  +        Q+K+    D++S GV      TG 
Sbjct: 185 DMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGS 220

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 51/294 (17%), Positives = 91/294 (30%), Gaps = 50/294 (17%)

Query: 324 NKGFRNVGDLLKSSAELLGKGCVGATYKVVLDGGDVVVVKRI---RERKKKREVDEWLRV 380
                 VG +     ++LG G  G      +     V VKRI         REV + LR 
Sbjct: 15  ETSVVIVGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREV-QLLRE 73

Query: 381 IGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASD 440
                H N++        +   ++  +     +L   +   +    + ++    + L   
Sbjct: 74  S--DEHPNVIRYFCTEKDRQFQYIAIELCA-ATLQEYVE-QKDFAHLGLE---PITLLQQ 126

Query: 441 SAKGLAFLHGYNKAH--------LFHGHLSSSNIVV---DQLGNACISDIGVHQLFHTPF 489
           +  GLA LH  N  H        L     +   I     D  G      +G H       
Sbjct: 127 TTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISD-FGLCKKLAVGRHSFSRRSG 185

Query: 490 FIN-DAYNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM----AKGDGELGI 543
               + + APE L  +   N +        D++S G V   +++            +  I
Sbjct: 186 VPGTEGWIAPEMLSEDCKENPT-----YTVDIFSAGCVFYYVISEGSHPFGKSLQRQANI 240

Query: 544 VKWVQMMGQDESAWEVFDFE-LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMS 596
           +                  + L  +K  +   R L++     +A  P+ RP+  
Sbjct: 241 LL------------GACSLDCLHPEKHEDVIARELIE---KMIAMDPQKRPSAK 279

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.8 bits (156), Expect = 3e-11
 Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 16/144 (11%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNL-SSWPHLKHLYLSHNRFT 127
           L+ LDL+              L+ L  L L  N + S  L   S    L+ L        
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 128 GTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTEL-TRLPNLLTLRLEDNRFT----GTLYS 181
            +  +     L+ L+ ++++HN  +    + E  + L NL  L L  N+        L  
Sbjct: 114 -SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 182 VNSSSRSILDFNVSNNQLSGQIPA 205
           ++      L  ++S N ++  I  
Sbjct: 172 LHQMPLLNLSLDLSLNPMN-FIQP 194

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 22/151 (14%), Positives = 42/151 (27%), Gaps = 40/151 (26%)

Query: 52  DPCFDSWRGVTCNPSTHRV-------------IKLVLEDLDLTG------PAEVLSRLTQ 92
           +PC                             +    ++LDL+        +       +
Sbjct: 1   EPC-------VEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPE 53

Query: 93  LRLLSLKNNLLSS------SNLNLSSWPHLKHLYLSHNRFTGTFPSGV-SSLRHLRRVDL 145
           L++L L    + +       +L      HL  L L+ N    +   G  S L  L+++  
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSL-----SHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 107

Query: 146 SHNAYEGEIPMTELTRLPNLLTLRLEDNRFT 176
                   +    +  L  L  L +  N   
Sbjct: 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQ 137

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 9/109 (8%)

Query: 72  KLVLEDLDLT--GPAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLK----HLYLSHN 124
           +L +    +      E  S LT L  L L +N + S    +L     +      L LS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 125 RFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDN 173
                   G      L+ + L  N  +  +P     RL +L  + L  N
Sbjct: 188 PMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 64.6 bits (157), Expect = 3e-11
 Identities = 55/314 (17%), Positives = 100/314 (31%), Gaps = 69/314 (21%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR---------ERKKKREVDEWLRVIGGLRHSN 388
            +LG+    A  +    + G+   V              ++ K EV    R++ G+++  
Sbjct: 79  TVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRL-RLLRGIKNQK 137

Query: 389 IVS--------------------IRAYCNGKDE----LFLVYDYLPHGSLHSLLH--GSR 422
                                  IR   + +D      F +Y      +L +      S 
Sbjct: 138 QAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLY-PRMQSNLQTFGEVLLSH 196

Query: 423 GPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVH 482
                 +  + RL+L     + LA LH Y    L H +L   +IV+DQ G   ++     
Sbjct: 197 SSTHKSLVHHARLQLTLQVIRLLASLHHY---GLVHTYLRPVDIVLDQRGGVFLTGFEHL 253

Query: 483 QLFHTPFFIN--DAYNAPEL----KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA- 535
                    +    +  PEL       + +   +       D ++ G+V+  I    +  
Sbjct: 254 VRDGARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPI 313

Query: 536 KGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNM 595
             D  LG  +W+                    K + + +RALL+     L    +DR   
Sbjct: 314 TKDAALGGSEWI----------------FRSCKNIPQPVRALLE---GFLRYPKEDRLLP 354

Query: 596 S--IVHRMIEDIRT 607
              +     E +RT
Sbjct: 355 LQAMETPEYEQLRT 368

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 54/220 (24%), Positives = 89/220 (40%), Gaps = 41/220 (18%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLRVIGGL---RHSNIVSIRA 394
           E++G G              + V +KRI   K +  +DE L+ I  +    H NIV    
Sbjct: 21  EVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIV--SY 78

Query: 395 YCN--GKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLAS---DSAKGLAFLH 449
           Y +   KDEL+LV   L  GS+  ++      G           +A+   +  +GL +LH
Sbjct: 79  YTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH 138

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVH-QLFH---------------TPFFIND 493
              +    H  + + NI++ + G+  I+D GV   L                 TP ++  
Sbjct: 139 KNGQ---IHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWM-- 193

Query: 494 AYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
              APE+       Y  +      D++SFG+  +E+ TG 
Sbjct: 194 ---APEV-MEQVRGYDFK-----ADIWSFGITAIELATGA 224

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 29/159 (18%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLK--HLYLSHNRF 126
           L +L +        P  V S L  +  + +  N L +S     ++  LK  +L +S  + 
Sbjct: 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184

Query: 127 TGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT----GTLYSV 182
           T   P  +     L  + L HN  +  I + +L R   L  L L  N+      G+L  +
Sbjct: 185 T-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240

Query: 183 NSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
                ++ + ++ NN+LS ++PA             K L
Sbjct: 241 ----PTLRELHLDNNKLS-RVPAG--------LPDLKLL 266

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 25/113 (22%), Positives = 37/113 (32%), Gaps = 13/113 (11%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFT- 127
           L  L L            LS L  LR L L NN LS     L     L+ +YL  N  T 
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITK 278

Query: 128 ---GTFPS--GVSSLRHLRRVDLSHNAYE-GEIPMTELTRLPNLLTLRLEDNR 174
                F          +   + L +N     E+       + + L ++  + +
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 38/169 (22%)

Query: 73  LVLEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNR 125
           L L  L ++       P ++   L +L L    +N + +    +L  +  L  L L HN+
Sbjct: 172 LKLNYLRISEAKLTGIPKDLPETLNELHL---DHNKIQAIELEDLLRYSKLYRLGLGHNQ 228

Query: 126 FT----GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNR------- 174
                 G+  S + +LR L    L +N     +P   L  L  L  + L  N        
Sbjct: 229 IRMIENGSL-SFLPTLREL---HLDNNKLS-RVP-AGLPDLKLLQVVYLHTNNITKVGVN 282

Query: 175 -FTGTLYSVNSSSRSILDFNVSNNQLS-GQIPAWMSPFGGSSFAGNKNL 221
            F    + V  +  + +     NN +   ++         ++F    + 
Sbjct: 283 DFCPVGFGVKRAYYNGISL--FNNPVPYWEVQP-------ATFRCVTDR 322

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 26/147 (17%)

Query: 62  TCNPSTHRVIKLVLEDLDLTG-PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHL 119
            C+        +   DL L   P E+    T L    L+NN +S     +     HL  L
Sbjct: 32  HCHLRV-----VQCSDLGLKAVPKEISPDTTLL---DLQNNDISELRKDDFKGLQHLYAL 83

Query: 120 YLSHNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLP-----NLLTLRLEDN 173
            L +N+ +        S LR L+++ +S N          L  +P     +L+ LR+ DN
Sbjct: 84  VLVNNKIS-KIHEKAFSPLRKLQKLYISKN---------HLVEIPPNLPSSLVELRIHDN 133

Query: 174 RFTGTLYSVNSSSRSILDFNVSNNQLS 200
           R       V S  R++    +  N L 
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLE 160

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.0 bits (158), Expect = 4e-11
 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 24/125 (19%)

Query: 88  SRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH 147
             + Q   L L    LSS  L  +  P +  L ++ N    + P   +SL +L   D   
Sbjct: 56  CLINQFSELQLNRLNLSS--LPDNLPPQITVLEITQNALI-SLPELPASLEYL---DACD 109

Query: 148 NAYEGEIPMTELTRLP----NLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQI 203
           N          L+ LP    +L  L +++N+ T     +      +   N  NNQL+  +
Sbjct: 110 N---------RLSTLPELPASLKHLDVDNNQLT----MLPELPALLEYINADNNQLT-ML 155

Query: 204 PAWMS 208
           P   +
Sbjct: 156 PELPT 160

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.6 bits (157), Expect = 5e-11
 Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 14/143 (9%)

Query: 75  LEDLDLTG--PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWP-HLKHLYLSHNRFTGTFP 131
           LE ++        +    T L +LS++NN L+     L   P  L+ L +S N    + P
Sbjct: 142 LEYINADNNQLTMLPELPTSLEVLSVRNNQLTF----LPELPESLEALDVSTNLLE-SLP 196

Query: 132 SGVSSLRHLRRV----DLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSR 187
           +      H            N     IP   +  L    T+ LEDN  +  +    S   
Sbjct: 197 AVPVRNHHSEETEIFFRCRENRIT-HIP-ENILSLDPTCTIILEDNPLSSRIRESLSQQT 254

Query: 188 SILDFNVSNNQLSGQIPAWMSPF 210
           +  D++      S       +  
Sbjct: 255 AQPDYHGPRIYFSMSDGQQNTLH 277

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.8 bits (116), Expect = 4e-06
 Identities = 16/124 (12%), Positives = 33/124 (26%), Gaps = 21/124 (16%)

Query: 87  LSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS 146
              L+Q    +  +   +        W        + N            +     + L+
Sbjct: 10  NFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQLN 67

Query: 147 HNAYEGEIPMTELTRLP-----NLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSG 201
                       L+ LP      +  L +  N       S+     S+   +  +N+LS 
Sbjct: 68  RL---------NLSSLPDNLPPQITVLEITQNALI----SLPELPASLEYLDACDNRLS- 113

Query: 202 QIPA 205
            +P 
Sbjct: 114 TLPE 117

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 39/172 (22%), Positives = 64/172 (37%), Gaps = 21/172 (12%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWP-HLKHLYLSHNRFT 127
           L  L L        PA +   L  L  L + +N L +  + +     +L  L L  N+  
Sbjct: 63  LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122

Query: 128 GTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSS 186
            + P  V  SL  L  + L +N  +  +P     +L +L  LRL +N+            
Sbjct: 123 -SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180

Query: 187 RSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPL---PSDCSNRTV 235
             +    + NNQL  ++P         +F   + L    L   P DC+   +
Sbjct: 181 TELKTLKLDNNQLK-RVPE-------GAFDSLEKLKMLQLQENPWDCTCNGI 224

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 63.9 bits (155), Expect = 5e-11
 Identities = 45/273 (16%), Positives = 91/273 (33%), Gaps = 53/273 (19%)

Query: 359 VVVVKRIRERKKKREVDEWLRVIGG---LRHSNIVSIRAYCNGKDELFLVYDYL----PH 411
           V+ ++ +R  K +++    LR I     ++      +      + +++++  +       
Sbjct: 129 VLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQ 188

Query: 412 GSLHSLLH--GSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD 469
            +L +      S       +  + RL+L     + LA LH Y    L H +L   +IV+D
Sbjct: 189 SNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG---LVHTYLRPVDIVLD 245

Query: 470 QLGNACISDIG------------VHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRC 517
           Q G   ++               + + F  P        A  +       +         
Sbjct: 246 QRGGVFLTGFEHLVRDGASAVSPIGRGFAPP-----ETTAERML--PFGQHHPTLMTFAF 298

Query: 518 DVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRA 576
           D ++ G+ +  I    +    D  LG  +W+                    K + + +RA
Sbjct: 299 DTWTLGLAIYWIWCADLPNTDDAALGGSEWI----------------FRSCKNIPQPVRA 342

Query: 577 LLQVALLCLAPLPKDRPNMS--IVHRMIEDIRT 607
           LL+     L    +DR      +     E +RT
Sbjct: 343 LLE---GFLRYPKEDRLLPLQAMETPEYEQLRT 372

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.0 bits (154), Expect = 7e-11
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 8/111 (7%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTG 128
           L+ L L        PA  ++ L  L+ L ++N+ LS+    +   P L+ L L       
Sbjct: 185 LQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR 243

Query: 129 TFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTL 179
            +P        L+R+ L   +    +P  ++ RL  L  L L        L
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVNLSRL 293

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.6 bits (145), Expect = 9e-10
 Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 30/151 (19%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTG 128
              L+L        P +   RL+ L+ +++    L      +  +  L+ L L+ N    
Sbjct: 83  RVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR- 140

Query: 129 TFPSGVSSLRHLRRVDLSHNAYEGEIP--------MTELTRLPNLLTLRLEDNRFT---- 176
             P+ ++SL  LR + +       E+P          E   L NL +LRLE         
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA 200

Query: 177 --GTLYSVNSSSRSILDFNVSNNQLSGQIPA 205
               L       +++    + N+ LS  +  
Sbjct: 201 SIANL-------QNLKSLKIRNSPLS-ALGP 223

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 21/130 (16%), Positives = 35/130 (26%), Gaps = 31/130 (23%)

Query: 75  LEDLDLTG--------------------------PAEVLSRLTQLRLLSLKNNLLSS--S 106
            E+L   G                           A   +     ++ +     L +   
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATAD 73

Query: 107 NLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLL 166
            L  ++ P    L L        FP     L HL+ + +       E+P   + +   L 
Sbjct: 74  LLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP-DTMQQFAGLE 130

Query: 167 TLRLEDNRFT 176
           TL L  N   
Sbjct: 131 TLTLARNPLR 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 20/115 (17%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSL-KNNLLSS---------SNLNLSSWPHLKH 118
           LE L L        PA  ++ L +LR LS+     L+          ++       +L+ 
Sbjct: 129 LETLTLARNPLRALPAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187

Query: 119 LYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDN 173
           L L       + P+ +++L++L+ + + ++     +    +  LP L  L L   
Sbjct: 188 LRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALG-PAIHHLPKLEELDLRGC 239

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 54/299 (18%), Positives = 104/299 (34%), Gaps = 72/299 (24%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKK-----REVDEWLRVIGGLRHSNIVSI 392
            +LG+G  G   K           +K+IR  ++K      EV     ++  L H  +V  
Sbjct: 12  AVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEV----MLLASLNHQYVVRY 67

Query: 393 -------------RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLAS 439
                              K  LF+  +Y  +G+L+ L+H       +    ++  +L  
Sbjct: 68  YAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIH----SENLNQQRDEYWRLFR 123

Query: 440 DSAKGLAFLHGYNKAHLFHGH--LSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA--- 494
              + L+++H          H  L   NI +D+  N  I D G+ +  H    I      
Sbjct: 124 QILEALSYIHSQGII-----HRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQ 178

Query: 495 -----------------YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKG 537
                            Y A E+  +   +Y+     ++ D+YS G++  E++    + G
Sbjct: 179 NLPGSSDNLTSAIGTAMYVATEV-LDGTGHYN-----EKIDMYSLGIIFFEMIYP-FSTG 231

Query: 538 DGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMS 596
              + I+K ++            +F    D    +  + +++   L +   P  RP   
Sbjct: 232 MERVNILKKLRS--------VSIEFPPDFDDNKMKVEKKIIR---LLIDHDPNKRPGAR 279

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 32/134 (23%), Positives = 47/134 (35%), Gaps = 16/134 (11%)

Query: 75  LEDLDLTGPA----EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTF 130
           L+ L L          L  L QL  L L NN ++     LS    L  L L  N+ +   
Sbjct: 114 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDI- 171

Query: 131 PSGVSSLRHLRRVDLSHNAYEGEIP-MTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSI 189
              ++ L  L+ + LS N     I  +  L  L NL  L L          +   + +S 
Sbjct: 172 -VPLAGLTKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECL----NKPINHQSN 222

Query: 190 LDFNVSNNQLSGQI 203
           L    +     G +
Sbjct: 223 LVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 8/133 (6%)

Query: 75  LEDLDLTGPA----EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTF 130
           LE L L         VLSRLT+L  LSL++N +S     L+    L++LYLS N  +   
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL- 193

Query: 131 PSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSIL 190
              ++ L++L  ++L         P+   + L    T++  D          +       
Sbjct: 194 -RALAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKP 251

Query: 191 DFNVSNNQLSGQI 203
           +      + + ++
Sbjct: 252 NVKWHLPEFTNEV 264

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 12/130 (9%)

Query: 75  LEDLDLTGPA----EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTF 130
           ++ +          + +  L  +  L L  N L+     L++  +L  L+L  N+     
Sbjct: 48  IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL- 105

Query: 131 PSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSIL 190
            S +  L+ L+ + L HN    +I    L  LP L +L L +N+ T    +V S    + 
Sbjct: 106 -SSLKDLKKLKSLSLEHNGIS-DI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 159

Query: 191 DFNVSNNQLS 200
             ++ +NQ+S
Sbjct: 160 TLSLEDNQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 13/91 (14%), Positives = 36/91 (39%), Gaps = 8/91 (8%)

Query: 87  LSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS 146
                +    +LK   ++ +    +    +  +  +++        G+  L ++ ++ L+
Sbjct: 20  DDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLN 76

Query: 147 HNAYEGEIP-MTELTRLPNLLTLRLEDNRFT 176
            N    ++  +  L  L NL  L L++N+  
Sbjct: 77  GN----KLTDIKPLANLKNLGWLFLDENKVK 103

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 12/85 (14%), Positives = 30/85 (35%), Gaps = 12/85 (14%)

Query: 98  LKNNLLSSSN-----LNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEG 152
           L +  ++         +  ++       L     T       + L  + ++  +++    
Sbjct: 3   LGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNS---- 56

Query: 153 EIP-MTELTRLPNLLTLRLEDNRFT 176
           +I  +  +  LPN+  L L  N+ T
Sbjct: 57  DIKSVQGIQYLPNVTKLFLNGNKLT 81

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 38/217 (17%)

Query: 339 ELLGKGCVGATYK-VVLDGGDVVVVKRIRERK--KKREVDEWLRVIGGLRHSNIVSIRAY 395
            + G+G  G          G  V +K++ +    + RE+   ++ +  L H NIV +++Y
Sbjct: 29  RMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQI-MQDLAVLHHPNIVQLQSY 87

Query: 396 -----CNGKDELFL--VYDYLPHGSLHSLL-HGSRGPGRMPVDWNKR-----LKLASDSA 442
                   + +++L  V +Y+P  +LH    +  R     P    K      +       
Sbjct: 88  FYTLGERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLI------- 139

Query: 443 KGLAFLHGYNKAHLFHGHLSSSNIVVDQL-GNACISDIG-----VHQLFHTPFFINDAYN 496
           + +  LH     ++ H  +   N++V++  G   + D G          +  +  +  Y 
Sbjct: 140 RSIGCLH-LPSVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNVAYICSRYYR 198

Query: 497 APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           APEL F  N +Y+        D++S G +  E++ G+
Sbjct: 199 APELIF-GNQHYT-----TAVDIWSVGCIFAEMMLGE 229

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 1/105 (0%)

Query: 72  KLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFP 131
           +L L    +     + + L Q   +   +N +   +        LK L +++NR      
Sbjct: 23  ELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGE 81

Query: 132 SGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT 176
               +L  L  + L++N+      +  L  L +L  L +  N  T
Sbjct: 82  GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 5/92 (5%)

Query: 84  AEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRR 142
           A   +   + R L L+   +    NL  ++      +  S N        G   LR L+ 
Sbjct: 12  AAQYTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKL--DGFPLLRRLKT 68

Query: 143 VDLSHNAYEGEIPMTELTRLPNLLTLRLEDNR 174
           + +++N     I       LP+L  L L +N 
Sbjct: 69  LLVNNNRIC-RIGEGLDQALPDLTELILTNNS 99

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 96  LSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIP 155
           + L   L+  +    ++    + L L   +      +  ++L     +D S N    EI 
Sbjct: 2   VKLTAELIEQA-AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN----EIR 55

Query: 156 MTE-LTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS 200
             +    L  L TL + +NR       ++ +   + +  ++NN L 
Sbjct: 56  KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 53/298 (17%), Positives = 97/298 (32%), Gaps = 46/298 (15%)

Query: 328 RNVGDLLKSSAELLGKGCVGATYKVVLDGGDVVVVKRI---RERKKKREVDEWLRVIGGL 384
           +++ +L+ S  ++LG G  G         G  V VKR+          E+ + L      
Sbjct: 11  QSLKNLVVSE-KILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEI-KLLTES--D 66

Query: 385 RHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLL--HGSRGPGRMPVDWNKRLKLASDSA 442
            H N++           L++  +     +L  L+                  + L    A
Sbjct: 67  DHPNVIRYYCSETTDRFLYIALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIA 125

Query: 443 KGLAFLHGYNKAH--------LF--HGHLSSSNIVVDQLGNACISDIG-----VHQLFHT 487
            G+A LH     H        L       ++      +     ISD G            
Sbjct: 126 SGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSF 185

Query: 488 PFFINDA-----YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM----AKGD 538
              +N+      + APEL   +NN  ++R+  +  D++S G V   IL+        K  
Sbjct: 186 RTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYS 245

Query: 539 GELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMS 596
            E  I++           + + + + + D+ +  E   L+      +   P  RP   
Sbjct: 246 RESNIIR---------GIFSLDEMKCLHDRSLIAEATDLIS---QMIDHDPLKRPTAM 291

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 15/113 (13%)

Query: 72  KLVLEDLDLTG-PAEVLSRLTQLRLLSLKNNLLSS------SNLNLSSWPHLKHLYLSHN 124
           ++ LE   +   P    S   +LR + L NN +S         L       L  L L  N
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL-----RSLNSLVLYGN 90

Query: 125 RFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT 176
           + T   P  +   L  L+ + L+ N     + +     L NL  L L DN+  
Sbjct: 91  KIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 10/107 (9%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNL-SSWPHLKHLYLSHNRFT 127
           L  +DL+         +    L  L  L L  N ++    +L      L+ L L+ N+  
Sbjct: 58  LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117

Query: 128 GTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDN 173
                     L +L  + L  N  +  I     + L  + T+ L  N
Sbjct: 118 -CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 51/214 (23%)

Query: 4   SRIFFFSFFCLFSLCLSN-SPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGV- 61
             +  F F C  +L + + +P+S+          V  S+ +L+               V 
Sbjct: 7   PIVGSFHFVCALALIVGSMTPFSNELES-----MVDYSNRNLTH--------------VP 47

Query: 62  TCNPSTHRVIKLVLEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS------SNLN 109
              P          + L L+           +S L++LR+L L +N + S          
Sbjct: 48  KDLPPR-------TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN- 99

Query: 110 LSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTEL-TRLPNLLTL 168
                 L++L +SHNR        ++SLRHL   DLS N ++  +P+ +    L  L  L
Sbjct: 100 ----QDLEYLDVSHNRLQNISCCPMASLRHL---DLSFNDFD-VLPVCKEFGNLTKLTFL 151

Query: 169 RLEDNRFT-GTLYSVNSSSRSILDFNVSNNQLSG 201
            L   +F    L  V     S +  ++ +  + G
Sbjct: 152 GLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG 185

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 26/120 (21%)

Query: 80  LTGPAEVLSRLTQLRLLSLKNNLLSS-------------SNLNLSS-----------WPH 115
               A +   ++ L  L +  N L+S               LNLSS            P 
Sbjct: 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK 451

Query: 116 LKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRF 175
           +K L L +NR   + P  V+ L+ L+ ++++ N  +  +P     RL +L  + L DN +
Sbjct: 452 VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 21/130 (16%)

Query: 83  PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWP-HLKHLYLSHNRFTGTFPSGVSSLRHLR 141
              + S   ++ +  L  +     ++     P     L  + N FT +   G S+L+ L+
Sbjct: 321 KEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ 380

Query: 142 RVDLSHNAYEGEIPMTELTRLP-------NLLTLRLEDNRFTGTLYSVNSS----SRSIL 190
            + L  N          L           N+ +L   D                 + SIL
Sbjct: 381 TLILQRN---------GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431

Query: 191 DFNVSNNQLS 200
             N+S+N L+
Sbjct: 432 VLNLSSNMLT 441

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 11/140 (7%)

Query: 68  HRVIKLVLEDLDLTGPAE------VLSRLTQLRLLSLKNNLLSSSNLNLSSW-PHLKHLY 120
             V  L + +L +T   +        + L  L +  +KN +   S   L S    +    
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335

Query: 121 LSHNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTL 179
           LS +  T         S      ++ + N +  +      + L  L TL L+ N      
Sbjct: 336 LSISD-TPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLK-NF 392

Query: 180 YSVNSSSRSILDFNVSNNQL 199
           + V   ++++      +  L
Sbjct: 393 FKVALMTKNMSSLETLDVSL 412

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 35/196 (17%), Positives = 67/196 (34%), Gaps = 47/196 (23%)

Query: 351 KVVLDGGDVVVVKR-IRERKKKREVDEWLRVIGGLRHSNIVSIRAY-----CNGKDELFL 404
           K ++  GD       + ER          + +  + H +IV I  +      +G    ++
Sbjct: 112 KGLVHSGDAEAQAMAMAER----------QFLAEVVHPSIVQIFNFVEHTDRHGDPVGYI 161

Query: 405 VYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSS 464
           V +Y+   SL           ++PV     +    +    L++LH      L +  L   
Sbjct: 162 VMEYVGGQSLKRSKGQ-----KLPVAE--AIAYLLEILPALSYLH---SIGLVYNDLKPE 211

Query: 465 NIVVDQLGNACISDIGV-------HQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRC 517
           NI++ +     + D+G          L+ TP      + APE+         +       
Sbjct: 212 NIMLTE-EQLKLIDLGAVSRINSFGYLYGTP-----GFQAPEI--------VRTGPTVAT 257

Query: 518 DVYSFGVVLLEILTGK 533
           D+Y+ G  L  +    
Sbjct: 258 DIYTVGRTLAALTLDL 273

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 30/198 (15%), Positives = 77/198 (38%), Gaps = 34/198 (17%)

Query: 351 KVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP 410
           +      +  +  + +    K E+    ++I  +++   ++        DE++++Y+Y+ 
Sbjct: 71  RDFTKSNNDKISIKSKYDDFKNEL----QIITDIKNEYCLTCEGIITNYDEVYIIYEYME 126

Query: 411 HGSLHSLLHGSRGPGRMPVDWNKRL------KLASDSAKGLAFLHGYNKAHLFHGHLSSS 464
           + S+            +  ++   +       +        +++H  N+ ++ H  +  S
Sbjct: 127 NDSILKFD---EYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIH--NEKNICHRDVKPS 181

Query: 465 NIVVDQLGNACISDIGVHQLFH---------TPFFINDAYNAPELKFNNNNNYSQRKFWQ 515
           NI++D+ G   +SD G  +            T       +  PE  F+N ++Y+  K   
Sbjct: 182 NILMDKNGRVKLSDFGESEYMVDKKIKGSRGTY-----EFMPPEF-FSNESSYNGAK--- 232

Query: 516 RCDVYSFGVVLLEILTGK 533
             D++S G+ L  +    
Sbjct: 233 -VDIWSLGICLYVMFYNV 249

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 37/159 (23%), Positives = 56/159 (35%), Gaps = 44/159 (27%)

Query: 72  KLVLEDLDLTG-PAEVLSRLTQLRLLSLKNNLLSS--------SNLNLS---------SW 113
           KL +    LT  P         L+ LS+ +N L+S          L              
Sbjct: 125 KLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLP 180

Query: 114 PHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLT----LR 169
             L+ L +S N+   + P+  S L  L      +N          LT LP L +    L 
Sbjct: 181 SGLQELSVSDNQLA-SLPTLPSELYKL---WAYNN---------RLTSLPALPSGLKELI 227

Query: 170 LEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMS 208
           +  NR T    S+      + +  VS N+L+  +P   S
Sbjct: 228 VSGNRLT----SLPVLPSELKELMVSGNRLT-SLPMLPS 261

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 42/156 (26%), Positives = 58/156 (37%), Gaps = 50/156 (32%)

Query: 72  KLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSS-------------SNLNLSSWP---- 114
           KL   +  LT    +    + L+ LS+ +N L+S              N  L+S P    
Sbjct: 165 KLWAYNNQLT---SLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPS 221

Query: 115 HLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLP----NLLTLRL 170
            LK L +S NR T + P   S L+ L    +S N          LT LP     LL+L +
Sbjct: 222 GLKELIVSGNRLT-SLPVLPSELKEL---MVSGN---------RLTSLPMLPSGLLSLSV 268

Query: 171 EDNRFT------GTLYSVNSSSRSILDFNVSNNQLS 200
             N+ T        L        S    N+  N LS
Sbjct: 269 YRNQLTRLPESLIHL-------SSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.4 bits (141), Expect = 5e-09
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 26/135 (19%)

Query: 89  RLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN 148
                 +L++  + L++  L      H+  L +  N  T + P+    LR L   ++S N
Sbjct: 38  LNNGNAVLNVGESGLTT--LPDCLPAHITTLVIPDNNLT-SLPALPPELRTL---EVSGN 91

Query: 149 A--------------YEGEIPMTELTRLP-NLLTLRLEDNRFTGTLYSVNSSSRSILDFN 193
                               P+T L  LP  L  L +  N+ T    S+      + + +
Sbjct: 92  QLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT----SLPVLPPGLQELS 147

Query: 194 VSNNQLSGQIPAWMS 208
           VS+NQL+  +PA  S
Sbjct: 148 VSDNQLA-SLPALPS 161

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 28/138 (20%)

Query: 72  KLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFP 131
            LV+ D +LT    + +   +LR L +  N L+S  +       L               
Sbjct: 65  TLVIPDNNLT---SLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLP---- 117

Query: 132 SGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLT----LRLEDNRFTGTLYSVNSSSR 187
              +    L ++ +  N         +LT LP L      L + DN+      S+ +   
Sbjct: 118 ---ALPSGLCKLWIFGN---------QLTSLPVLPPGLQELSVSDNQLA----SLPALPS 161

Query: 188 SILDFNVSNNQLSGQIPA 205
            +      NNQL+  +P 
Sbjct: 162 ELCKLWAYNNQLT-SLPM 178

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 12/140 (8%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTG 128
           L  L +        P   L  L+    ++L+ N LS     L +   +            
Sbjct: 263 LLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSE--RTLQALREITSAPGYSGPIIR 319

Query: 129 TFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRS 188
              +G S+ R  R + L+   +       E            EDN               
Sbjct: 320 FDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDN--ADAFSLFLDRLSE 377

Query: 189 ILDFNVSNNQLSGQIPAWMS 208
             +F   +     QI +W++
Sbjct: 378 TENFI-KDAGFKAQISSWLA 396

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 16/115 (13%), Positives = 31/115 (26%), Gaps = 9/115 (7%)

Query: 92  QLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYE 151
                  +        +          L +  +  T T P  +    H+  + +  N   
Sbjct: 18  AAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT 74

Query: 152 GEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAW 206
             +P       P L TL +  N+ T +L  +      +  F+     L       
Sbjct: 75  -SLP----ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGL 123

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 12/130 (9%)

Query: 75  LEDLDLTGPA----EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTF 130
           +  L   G      E +  L  L  L LK+N ++     L +   +  L LS N      
Sbjct: 43  ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKN-- 99

Query: 131 PSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSIL 190
            S ++ L+ ++ +DL+         +T L  L NL  L L+ N+ T    S  +   ++ 
Sbjct: 100 VSAIAGLQSIKTLDLTSTQITD---VTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQ 154

Query: 191 DFNVSNNQLS 200
             ++ N Q+S
Sbjct: 155 YLSIGNAQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 11/132 (8%)

Query: 70  VIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGT 129
            IK+     ++T      + L  +  LS     +++    +    +L  L L  N+ T  
Sbjct: 21  AIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD- 77

Query: 130 FPSGVSSLRHLRRVDLSHNAYEGEIP-MTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRS 188
             + + +L  +  ++LS N     +  ++ +  L ++ TL L   + T    +  +   +
Sbjct: 78  -LAPLKNLTKITELELSGN----PLKNVSAIAGLQSIKTLDLTSTQITDV--TPLAGLSN 130

Query: 189 ILDFNVSNNQLS 200
           +    +  NQ++
Sbjct: 131 LQVLYLDLNQIT 142

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 85  EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVD 144
             L+ LT L+ LS+ N  +S     L++   L  L    N+ +    S ++SL +L  V 
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDI--SPLASLPNLIEVH 201

Query: 145 LSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT 176
           L +N      P   L    NL  + L +   T
Sbjct: 202 LKNNQISDVSP---LANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 87  LSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS 146
              L     ++   + ++ +    +    +  L       T     GV  L +L  ++L 
Sbjct: 15  DPALANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELK 71

Query: 147 HNAYEGEIP-MTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP 204
            N    +I  +  L  L  +  L L  N       S  +  +SI   ++++ Q++   P
Sbjct: 72  DN----QITDLAPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP 124

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 22/121 (18%), Positives = 52/121 (42%), Gaps = 11/121 (9%)

Query: 85  EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVD 144
             L+ L++L  L   +N +S  +  L+S P+L  ++L +N+ +    S +++  +L  V 
Sbjct: 167 TPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVT 223

Query: 145 LSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP 204
           L++      I    +    NL+   +      G   +  + S +      ++  L+  + 
Sbjct: 224 LTNQ----TITNQPVFYNNNLVVPNVVKGPS-GAPIAPATISDNG---TYASPNLTWNLT 275

Query: 205 A 205
           +
Sbjct: 276 S 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 7/92 (7%)

Query: 109 NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTL 168
              +  +   +    +  T       + L  +  +            +  +  L NL+ L
Sbjct: 14  PDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT---IEGVQYLNNLIGL 68

Query: 169 RLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS 200
            L+DN+ T    +   +   I +  +S N L 
Sbjct: 69  ELKDNQITD--LAPLKNLTKITELELSGNPLK 98

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 48/215 (22%), Positives = 98/215 (45%), Gaps = 42/215 (19%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRI--RERKKKREVDEWLRVIGGLRHSNIVS-IRA 394
           E +G+G  G  Y  + +  G  V ++++  +++ KK  +   + V+   ++ NIV+ + +
Sbjct: 26  EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 85

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA 454
           Y  G DEL++V +YL  GSL  ++        M       +    +  + L FLH     
Sbjct: 86  YLVG-DELWVVMEYLAGGSLTDVVT----ETCMDEGQIAAV--CRECLQALEFLHSNQV- 137

Query: 455 HLFHGHLSSSNIVVDQLGNACISDIGV-HQLFH----------TPFFINDAYNAPELKFN 503
              H  + S NI++   G+  ++D G   Q+            TP+++     APE+   
Sbjct: 138 --IHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWM-----APEV--- 187

Query: 504 NNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD 538
                +++ +  + D++S G++ +E     M +G+
Sbjct: 188 ----VTRKAYGPKVDIWSLGIMAIE-----MIEGE 213

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.3 bits (148), Expect = 5e-10
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 85  EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVD 144
             L  L +L+ LSL++N +S  N  L   P L+ LYL +N+ T    + +S L  L  + 
Sbjct: 103 SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLS 159

Query: 145 LSHNAYEGEIP-MTELTRLPNLLTLRLEDNRFT 176
           L  N    +I  +  L  L  L  L L  N  +
Sbjct: 160 LEDN----QISDIVPLAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.7 bits (144), Expect = 2e-09
 Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 14/131 (10%)

Query: 75  LEDLDLTGPA----EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTF 130
           ++ +          + +  L  +  L L  N L+     L++  +L  L+L  N+     
Sbjct: 45  IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKIKDL- 102

Query: 131 PSGVSSLRHLRRVDLSHNAYEGEI-PMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSI 189
            S +  L+ L+ + L HN     I  +  L  LP L +L L +N+ T    +V S    +
Sbjct: 103 -SSLKDLKKLKSLSLEHN----GISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKL 155

Query: 190 LDFNVSNNQLS 200
              ++ +NQ+S
Sbjct: 156 DTLSLEDNQIS 166

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.0 bits (142), Expect = 3e-09
 Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 4/119 (3%)

Query: 85  EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVD 144
            VLSRLT+L  LSL++N +S     L+    L++LYLS N  +      ++ L++L  ++
Sbjct: 147 TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLE 203

Query: 145 LSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQI 203
           L         P+   + L    T++  D          +       +      + + ++
Sbjct: 204 LFSQECL-NKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 261

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 87  LSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS 146
                +    +LK   ++ +    +    +  +  +++        G+  L ++ ++ L+
Sbjct: 17  DDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLN 73

Query: 147 HNAYEGEIP-MTELTRLPNLLTLRLEDNRFT 176
            N    ++  +  LT L NL  L L++N+  
Sbjct: 74  GN----KLTDIKPLTNLKNLGWLFLDENKIK 100

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 11/84 (13%)

Query: 98  LKNNLLSSSNLN----LSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGE 153
           +   +  S+ +       ++       L     T       + L  + ++  +++    +
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNS----D 54

Query: 154 IP-MTELTRLPNLLTLRLEDNRFT 176
           I  +  +  LPN+  L L  N+ T
Sbjct: 55  IKSVQGIQYLPNVTKLFLNGNKLT 78

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 16/138 (11%), Positives = 36/138 (26%), Gaps = 2/138 (1%)

Query: 85  EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVD 144
             L+ LT+L+ L L  N +S     L+   +L  L L          +  S+L     V 
Sbjct: 169 VPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227

Query: 145 LSHNAYEGEIPMTELTRLPNL-LTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQI 203
            +  +      +++        +   L +     +       +                 
Sbjct: 228 NTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLK 287

Query: 204 PAWMSPFGGSSFAGNKNL 221
             +   +          +
Sbjct: 288 EVYTVSYDVDGTVIKTKV 305

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 4/106 (3%)

Query: 72  KLVLEDLDLTG-PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTF 130
            L L +  L       L   T+L  L+L    L+   +   + P L  L LSHN+   + 
Sbjct: 35  ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQ-SL 92

Query: 131 PSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT 176
           P    +L  L  +D+S N     +P+  L  L  L  L L+ N   
Sbjct: 93  PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 21/115 (18%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS------SNLNLSSWPHLKHLYLS 122
           L  LDL+       P  +   L  L +L +  N L+S        L       L+ LYL 
Sbjct: 79  LGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGL-----GELQELYLK 132

Query: 123 HNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT 176
            N    T P G+ +    L ++ L++N    E+P   L  L NL TL L++N   
Sbjct: 133 GNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 8e-09
 Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 35/119 (29%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS------SNLNLSSWPHLKHLYLS 122
           L  LD++       P   L  L +L+ L LK N L +      +       P L+ L L+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT-----PKLEKLSLA 156

Query: 123 HNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLP-------NLLTLRLEDN 173
           +N  T   P+G+ + L +L  + L  N          L  +P        L    L  N
Sbjct: 157 NNNLT-ELPAGLLNGLENLDTLLLQEN---------SLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 106 SNLNLSSWP-----HLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELT 160
              NL++ P         L+LS N       + +     L +++L       ++      
Sbjct: 18  DKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ--VDG 74

Query: 161 RLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPA 205
            LP L TL L  N+   +L  +  +  ++   +VS N+L+  +P 
Sbjct: 75  TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL 117

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 60.1 bits (146), Expect = 6e-10
 Identities = 49/210 (23%), Positives = 80/210 (38%), Gaps = 29/210 (13%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR----VIGGLRHSNIVSIR 393
             +G G  G  +K+     G V+ VK++R    K E    L     V+       IV  +
Sbjct: 31  GEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIV--Q 88

Query: 394 AYCN--GKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY 451
            +       ++F+  + +       L    R  G +P       K+     K L +L   
Sbjct: 89  CFGTFITNTDVFIAMELM-GTCAEKLK--KRMQGPIPERILG--KMTVAIVKALYYLK-- 141

Query: 452 NKAHLFHGHLSSSNIVVDQLGNACISDIGVH-QLFHTPFFINDA----YNAPE---LKFN 503
            K  + H  +  SNI++D+ G   + D G+  +L         A    Y APE       
Sbjct: 142 EKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDP 201

Query: 504 NNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
              +Y  R      DV+S G+ L+E+ TG+
Sbjct: 202 TKPDYDIR-----ADVWSLGISLVELATGQ 226

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 47/215 (21%), Positives = 79/215 (36%), Gaps = 36/215 (16%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR------ERKK-KREVDEWLRVIGGLRHSNIV 390
             +G+G  G+  K+V    G ++ VKRIR      E+K+   ++D  +R         IV
Sbjct: 28  GEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSS---DCPYIV 84

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
                   + + ++  + +   S               +      K+   + K L  L  
Sbjct: 85  QFYGALFREGDCWICMELMS-TSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLK- 142

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVH-QLFH---------TPFFINDAYNAPE- 499
                + H  +  SNI++D+ GN  + D G+  QL                   Y APE 
Sbjct: 143 -ENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCRP-----YMAPER 196

Query: 500 -LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
                +   Y  R      DV+S G+ L E+ TG+
Sbjct: 197 IDPSASRQGYDVR-----SDVWSLGITLYELATGR 226

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 43/215 (20%), Positives = 92/215 (42%), Gaps = 42/215 (19%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRI--RERKKKREVDEWLRVIGGLRHSNIVS-IRA 394
             +G+G  G          G  V VK +  R+++++  +   + ++   +H N+V   ++
Sbjct: 51  VKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKS 110

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA 454
           Y  G +EL+++ ++L  G+L  ++       R+  +    +       + LA+LH     
Sbjct: 111 YLVG-EELWVLMEFLQGGALTDIVS----QVRLNEEQIATV--CEAVLQALAYLHAQGVI 163

Query: 455 HLFHGHLSSSNIVVDQLGNACISDIGV-HQLFH----------TPFFINDAYNAPELKFN 503
           H     + S +I++   G   +SD G   Q+            TP+++     APE+   
Sbjct: 164 HR---DIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWM-----APEV--- 212

Query: 504 NNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD 538
                S+  +    D++S G++++E     M  G+
Sbjct: 213 ----ISRSLYATEVDIWSLGIMVIE-----MVDGE 238

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)

Query: 72  KLVLEDLDLTG--PAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFTG 128
           +L L + + T      +  +L QLR ++  NN ++            +  + L+ NR   
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE- 94

Query: 129 TFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT 176
                +   L  L+ + L  N     +       L ++  L L DN+ T
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 20/112 (17%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSS------SNLNLSSWPHLKHLYLS 122
           L  ++ +               + +  + L +N L +        L       LK L L 
Sbjct: 59  LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGL-----ESLKTLMLR 113

Query: 123 HNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDN 173
            NR T    +     L  +R + L  N     +       L +L TL L  N
Sbjct: 114 SNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 45/209 (21%), Positives = 82/209 (39%), Gaps = 35/209 (16%)

Query: 340 LLGKGCVGATYKVV-LDGGDVVVVKRIRERK-KKREVDEWLR----VIGGLRHSNIVSIR 393
            LGKG  G  Y         ++ +K + + + +K  V+  LR    +   LRH NI+ + 
Sbjct: 21  PLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMY 80

Query: 394 AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNK 453
            Y + +  ++L+ ++ P G L+  L   +  GR     +       + A  L + H   +
Sbjct: 81  NYFHDRKRIYLMLEFAPRGELYKEL---QKHGRFDEQRSAT--FMEELADALHYCH---E 132

Query: 454 AHLFHGHLSSSNIVVDQLGNACISDIG--VHQLFH-------TPFFINDAYNAPELKFNN 504
             + H  +   N+++   G   I+D G  VH           T       Y  PE+    
Sbjct: 133 RKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRTMCGTL-----DYLPPEMI--E 185

Query: 505 NNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
              +      ++ D++  GV+  E L G 
Sbjct: 186 GKTHD-----EKVDLWCAGVLCYEFLVGM 209

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 23/119 (19%)

Query: 75  LEDLDLTG-------PAEVLSRLTQLRLLSL-KNNLLSS------SNLNLSSWPHLKHLY 120
           +  + ++         +     L+++  + +     L+         L     P LK L 
Sbjct: 57  ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL-----PLLKFLG 111

Query: 121 LSHNRFTGTFP--SGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLL-TLRLEDNRFT 176
           + +      FP  + V S      ++++ N Y   IP+     L N   TL+L +N FT
Sbjct: 112 IFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 23/149 (15%), Positives = 49/149 (32%), Gaps = 14/149 (9%)

Query: 62  TCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLY 120
            C+          +   D+     + S     + L L    L +  +   S+ P++  +Y
Sbjct: 9   ECHQEED----FRVTCKDIQ---RIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIY 61

Query: 121 LSHNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT--- 176
           +S +       S    +L  +  +++ +      I    L  LP L  L + +       
Sbjct: 62  VSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP 121

Query: 177 GTLYSVNSSSRSILDFNVSNNQLSGQIPA 205
                 ++    IL+    N  ++  IP 
Sbjct: 122 DLTKVYSTDIFFILEIT-DNPYMT-SIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 22/138 (15%), Positives = 39/138 (28%), Gaps = 37/138 (26%)

Query: 75  LEDLDLTG-------PAEVLSRLTQLRLLSLKNNLLSS-------------------SNL 108
           +  +++           + L  L  L+ L + N  L                      N 
Sbjct: 82  VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141

Query: 109 NLSSWP---------HLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTEL 159
            ++S P             L L +N FT +      +   L  V L+ N Y   I     
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200

Query: 160 TRLPNLLT-LRLEDNRFT 176
             + +  + L +     T
Sbjct: 201 GGVYSGPSLLDVSQTSVT 218

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 46/216 (21%), Positives = 84/216 (38%), Gaps = 39/216 (18%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR------ERKK-KREVDEWLRVIGGLRHSNIV 390
             LG+G  G   K+  +  G ++ VKRIR      E+K+   ++D  +R    +     V
Sbjct: 13  MELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMR---TVDCPFTV 69

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLL-HGSRGPGRMPVDWNKRLKLASDSAKGLAFLH 449
           +       + ++++  + +   SL             +P D     K+A    K L  LH
Sbjct: 70  TFYGALFREGDVWICMELMD-TSLDKFYKQVIDKGQTIPEDILG--KIAVSIVKALEHLH 126

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVH-QLFH---------TPFFINDAYNAPE 499
             +K  + H  +  SN++++ LG   + D G+   L                   Y APE
Sbjct: 127 --SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDIDAGCKP-----YMAPE 179

Query: 500 --LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
                 N   YS +      D++S G+ ++E+   +
Sbjct: 180 RINPELNQKGYSVK-----SDIWSLGITMIELAILR 210

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 53/214 (24%), Positives = 99/214 (46%), Gaps = 39/214 (18%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIR--ERKKKREVDEWLRVIGGLRHSNIVSIRAY- 395
           +++G G  G  ++  L   D V +K++   +R K RE+ + +R+   ++H N+V ++A+ 
Sbjct: 46  KVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNREL-QIMRI---VKHPNVVDLKAFF 101

Query: 396 ---CNGKDE--LFLVYDYLPHGSLHSLL-HGSRGPGRMPVDWNKR----LKLASDSAKGL 445
               + KDE  L LV +Y+P  +++    H ++    MP+   K     L       + L
Sbjct: 102 YSNGDKKDEVFLNLVLEYVPE-TVYRASRHYAKLKQTMPMLLIKLYMYQL------LRSL 154

Query: 446 AFLHGYNKAHLFHGHLSSSNIVVDQL-GNACISDIGV-HQLFHTPFFINDA----YNAPE 499
           A++H      + H  +   N+++D   G   + D G    L      ++      Y APE
Sbjct: 155 AYIHSIG---ICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSYICSRYYRAPE 211

Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           L F   N Y+        D++S G V+ E++ G+
Sbjct: 212 LIFGATN-YTTN-----IDIWSTGCVMAELMQGQ 239

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 49/214 (22%), Positives = 92/214 (42%), Gaps = 44/214 (20%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVS-IR 393
           E +GKG  G  +K +      VV +K I   + + E+++  +   V+       +     
Sbjct: 28  EKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYG 87

Query: 394 AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLAS---DSAKGLAFLHG 450
           +Y     +L+++ +YL  GS   LL     PG +         +A+   +  KGL +LH 
Sbjct: 88  SYLKD-TKLWIIMEYLGGGSALDLLE----PGPLDETQ-----IATILREILKGLDYLHS 137

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGV-HQLFH----------TPFFINDAYNAPE 499
             K    H  + ++N+++ + G   ++D GV  QL            TPF++     APE
Sbjct: 138 EKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWM-----APE 189

Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           +         Q  +  + D++S G+  +E+  G+
Sbjct: 190 V-------IKQSAYDSKADIWSLGITAIELARGE 216

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 47/219 (21%), Positives = 79/219 (36%), Gaps = 50/219 (22%)

Query: 339 ELLGKGCVGATYK---VVLD------------GGDVVVVKRIRERKKKREVDEWLRVIGG 383
            L+G+G +G  Y+    V +              D V   R++     RE     R  G 
Sbjct: 40  RLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQ-----REA----RTAGR 90

Query: 384 LRHSNIVSIRAYCNGKDE--LFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDS 441
           L+  ++V I  +  G+ +  L++    +    L ++L   R  G +     + + +    
Sbjct: 91  LQEPHVVPI--HDFGEIDGQLYVDMRLINGVDLAAML---RRQGPLAPP--RAVAIVRQI 143

Query: 442 AKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV------HQLFHTPFFI-NDA 494
              L   H    A   H  +   NI+V     A + D G+       +L      +    
Sbjct: 144 GSALDAAH---AAGATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLY 200

Query: 495 YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           Y APE    ++  Y       R D+Y+   VL E LTG 
Sbjct: 201 YMAPERFSESHATY-------RADIYALTCVLYECLTGS 232

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 49/216 (22%), Positives = 96/216 (44%), Gaps = 44/216 (20%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVS-IRAYC 396
           E LG+G  G+ YK +  + G +V +K++      +E+ + + ++      ++V    +Y 
Sbjct: 35  EKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYGSYF 94

Query: 397 NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLAS---DSAKGLAFLHGYNK 453
               +L++V +Y   GS+  ++        +  D      +A+    + KGL +LH   K
Sbjct: 95  KN-TDLWIVMEYCGAGSVSDIIRLRNKT--LTEDE-----IATILQSTLKGLEYLHFMRK 146

Query: 454 AHLFHGHLSSSNIVVDQLGNACISDIGV-HQLFH----------TPFFINDAYNAPELKF 502
            H     + + NI+++  G+A ++D GV  QL            TPF++     APE+  
Sbjct: 147 IHR---DIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWM-----APEV-- 196

Query: 503 NNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD 538
                  +  +    D++S G+  +E     MA+G 
Sbjct: 197 -----IQEIGYNCVADIWSLGITAIE-----MAEGK 222

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 41/221 (18%), Positives = 87/221 (39%), Gaps = 47/221 (21%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRI--RERKKKREVDEWLRVIGGLRHSNIVS-IRA 394
             LG G  G  YK    + G +   K I  +  ++  +    + ++    H  IV  + A
Sbjct: 25  GELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGA 84

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLAS---DSAKGLAFLHGY 451
           Y +   +L+++ ++ P G++ +++        +         +        + L FLH  
Sbjct: 85  YYHD-GKLWIMIEFCPGGAVDAIMLELDRG--LTEPQ-----IQVVCRQMLEALNFLHSK 136

Query: 452 NKAHLFHGHLSSSNIVVDQLGNACISDIGV-HQLFH----------TPFFINDAYNAPEL 500
                 H  L + N+++   G+  ++D GV  +             TP+++     APE+
Sbjct: 137 RI---IHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWM-----APEV 188

Query: 501 ---KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD 538
              +   +  Y       + D++S G+ L+E     MA+ +
Sbjct: 189 VMCETMKDTPYD-----YKADIWSLGITLIE-----MAQIE 219

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 42/216 (19%)

Query: 339 ELLGKGCVGATYK-VVLDGGDVVVVKRIR--ERKKKREVDEWLRVIGGLRHSNIVSIRAY 395
           +++G G  G  Y+  + D G++V +K++   +R K RE+ + +R    L H NIV +R +
Sbjct: 60  KVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNREL-QIMRK---LDHCNIVRLRYF 115

Query: 396 ----CNGKDE--LFLVYDYLPHGSLHSLL-HGSRGPGRMPVDWNKR-----LKLASDSAK 443
                  KDE  L LV DY+P  +++ +  H SR    +PV + K              +
Sbjct: 116 FYSSGEKKDEVYLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLF-------R 167

Query: 444 GLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIGV-HQLFHTPFFINDA----YNA 497
            LA++H +    + H  +   N+++D       + D G   QL      ++      Y A
Sbjct: 168 SLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRA 224

Query: 498 PELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           PEL F    +Y+        DV+S G VL E+L G+
Sbjct: 225 PELIF-GATDYT-----SSIDVWSAGCVLAELLLGQ 254

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 44/281 (15%), Positives = 98/281 (34%), Gaps = 49/281 (17%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRI-RERKKKREVDEWLRVIG---GLRH--SNIVSI 392
           + +G G     ++V+ +   +  +K +  E    + +D +   I     L+     I+ +
Sbjct: 62  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 121

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
             Y      +++V +   +  L+S L   +    +     K      +  + +  +H   
Sbjct: 122 YDYEITDQYIYMVMEC-GNIDLNSWLK-KKK--SIDPWERKSY--WKNMLEAVHTIH--- 172

Query: 453 KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-------------TPFFINDAYNAPE 499
           +  + H  L  +N ++   G   + D G+                          Y  PE
Sbjct: 173 QHGIVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDTTSVVKDSQVGAVN-----YMPPE 226

Query: 500 L----KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDES 555
                  +  N  S+ K   + DV+S G +L  +  GK         I K   ++  +  
Sbjct: 227 AIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHE 286

Query: 556 AWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMS 596
                +F  I +K++++ ++  L+         PK R ++ 
Sbjct: 287 ----IEFPDIPEKDLQDVLKCCLKRD-------PKQRISIP 316

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 20/204 (9%), Positives = 50/204 (24%), Gaps = 50/204 (24%)

Query: 339 ELLGKGCVGATYK---VVLDGGDVVVVKRIR------ERKKKREVDEWLRVIGGLRHSNI 389
              G       ++     LD    V +  +       +   +  +      +  +    +
Sbjct: 37  IFHGGVPPLQFWQALDTALD--RQVALTFVDPQGVLPDDVLQETLSR-TLRLSRIDKPGV 93

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH 449
             +    + +    +V +++  GSL  +   S  P          ++     A      H
Sbjct: 94  ARVLDVVHTRAGGLVVAEWIRGGSLQEVADTSPSPVGA-------IRAMQSLAAAADAAH 146

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYS 509
              +A +       S + V   G+  ++                                
Sbjct: 147 ---RAGVALSIDHPSRVRVSIDGDVVLAYPA--------------TMPDA---------- 179

Query: 510 QRKFWQRCDVYSFGVVLLEILTGK 533
                 + D+   G  L  +L  +
Sbjct: 180 ----NPQDDIRGIGASLYALLVNR 199

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 36/218 (16%), Positives = 78/218 (35%), Gaps = 38/218 (17%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRI-RERKKKREVDEWLRVIGGLR-----HSNIVSI 392
           + +G G     ++V+ +   +  +K +  E    + +D +   I  L         I+ +
Sbjct: 15  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 74

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
             Y      +++V +   +  L+S L   +      +D  +R     +  + +  +H + 
Sbjct: 75  YDYEITDQYIYMVMEC-GNIDLNSWLK-KKKS----IDPWERKSYWKNMLEAVHTIHQHG 128

Query: 453 KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-------------TPFFINDAYNAPE 499
              + H  L  +N ++   G   + D G+                  T  ++      PE
Sbjct: 129 ---IVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYM-----PPE 179

Query: 500 L----KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
                  +  N  S+ K   + DV+S G +L  +  GK
Sbjct: 180 AIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGK 217

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 23/156 (14%), Positives = 43/156 (27%), Gaps = 7/156 (4%)

Query: 100 NNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTE 158
            +    S  +L    +L  LY+ + +            L  LR + +  +     +    
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDA 75

Query: 159 LTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQL----SGQIPAWMSPFGGSS 214
               P L  L L  N    +L        S+ +  +S N L    + +        G   
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGG 134

Query: 215 FAGNKNLCGRPLPSDCSNRTVEPEQPPRSRPRSSRV 250
               K  C    P              + +  ++ V
Sbjct: 135 VPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASV 170

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 19/87 (21%)

Query: 75  LEDLDLTG-------PAEVLSRLTQLRLLSLKNNLLSS------SNLNLSSWPHLKHLYL 121
           L +L +             L  L +LR L++  + L                P L  L L
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT-----PRLSRLNL 87

Query: 122 SHNRFTGTFPSGVSSLRHLRRVDLSHN 148
           S N    +          L+ + LS N
Sbjct: 88  SFNALE-SLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 18/99 (18%)

Query: 87  LSRLTQLRLLSLKNNLLSSS--NLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVD 144
           L     L  L ++N          +L     L++L +  +      P        L R++
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 145 LSHNAYEGEIPMTELTRLP-------NLLTLRLEDNRFT 176
           LS NA         L  L        +L  L L  N   
Sbjct: 87  LSFNA---------LESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 6/59 (10%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFT 127
           L +L +          +      +L  L+L  N L S +        L+ L LS N   
Sbjct: 58  LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 11/117 (9%)

Query: 85  EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVD 144
             +   T L+ L L +N +S  +  L     L+ L ++ NR         + L  L    
Sbjct: 57  AGMQFFTNLKELHLSHNQISDLS-PLKDLTKLEELSVNRNRLKNLNGIPSACLSRL---F 112

Query: 145 LSHNAYEGEIP-MTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS 200
           L +N    E+     L  L NL  L + +N+   ++  +      +   ++  N+++
Sbjct: 113 LDNN----ELRDTDSLIHLKNLEILSIRNNKLK-SIVML-GFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 13/130 (10%)

Query: 75  LEDLDLTGPA----EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTF 130
               +L   +         L+ ++  +  N+ + S    +  + +LK L+LSHN+ +   
Sbjct: 21  AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL- 78

Query: 131 PSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSIL 190
            S +  L  L  + ++ N     +          L  L L++N    T        +++ 
Sbjct: 79  -SPLKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFLDNNELRDT--DSLIHLKNLE 131

Query: 191 DFNVSNNQLS 200
             ++ NN+L 
Sbjct: 132 ILSIRNNKLK 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 8/66 (12%), Positives = 18/66 (27%), Gaps = 5/66 (7%)

Query: 109 NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTL 168
                 +     L     T         L  ++  +  ++  +    +  +    NL  L
Sbjct: 14  PDPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQS---LAGMQFFTNLKEL 68

Query: 169 RLEDNR 174
            L  N+
Sbjct: 69  HLSHNQ 74

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 35/218 (16%), Positives = 77/218 (35%), Gaps = 38/218 (17%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRI-RERKKKREVDEWLRVIG---GLRH--SNIVSI 392
           + +G G     ++V+ +   +  +K +  E    + +D +   I     L+     I+ +
Sbjct: 34  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 93

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
             Y      +++V +   +  L+S L   +    +     K      +  + +  +H   
Sbjct: 94  YDYEITDQYIYMVMEC-GNIDLNSWL---KKKKSIDPWERKS--YWKNMLEAVHTIH--- 144

Query: 453 KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-------------TPFFINDAYNAPE 499
           +  + H  L  +N ++   G   + D G+                  T  ++      PE
Sbjct: 145 QHGIVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYM-----PPE 198

Query: 500 L----KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
                  +  N  S+ K   + DV+S G +L  +  GK
Sbjct: 199 AIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGK 236

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 53/244 (21%), Positives = 102/244 (41%), Gaps = 44/244 (18%)

Query: 339 ELLGKGCVGATYKVVLDG-----GDVVVVKRIRERKKK--------REVDEWLRVIGGLR 385
            L+G+G    +Y +V+       G +V +K+  E            RE+    +++  LR
Sbjct: 31  GLVGEG----SYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREI----KLLKQLR 82

Query: 386 HSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGL 445
           H N+V++   C  K   +LV++++ H ++   L     P  +     +  K       G+
Sbjct: 83  HENLVNLLEVCKKKKRWYLVFEFVDH-TILDDL--ELFPNGLDYQVVQ--KYLFQIINGI 137

Query: 446 AFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP--FFIND----AYNAPE 499
            F H +N   + H  +   NI+V Q G   + D G  +    P   + ++     Y APE
Sbjct: 138 GFCHSHN---IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPE 194

Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELG-IVKWVQMMG-QDESA 556
           L    +  Y      +  DV++ G ++ E+  G+ +  GD ++  +   +  +G      
Sbjct: 195 LLV-GDVKYG-----KAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRH 248

Query: 557 WEVF 560
            E+F
Sbjct: 249 QELF 252

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 48/224 (21%), Positives = 92/224 (41%), Gaps = 51/224 (22%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLRV-IGGLR----HSNIVS- 391
           EL+G G  G  YK   +  G +  +K +       + +E ++  I  L+    H NI + 
Sbjct: 30  ELVGNGTYGQVYKGRHVKTGQLAAIKVM---DVTGDEEEEIKQEINMLKKYSHHRNIATY 86

Query: 392 -----IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLAS---DSAK 443
                 +      D+L+LV ++   GS+  L+  ++G   +  +W     +A    +  +
Sbjct: 87  YGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKG-NTLKEEW-----IAYICREILR 140

Query: 444 GLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-HQLFH----------TPFFIN 492
           GL+ LH +   H     +   N+++ +     + D GV  QL            TP+++ 
Sbjct: 141 GLSHLHQHKVIHR---DIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWM- 196

Query: 493 DAYNAPEL---KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
               APE+     N +  Y       + D++S G+  +E+  G 
Sbjct: 197 ----APEVIACDENPDATYD-----FKSDLWSLGITAIEMAEGA 231

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 47/217 (21%), Positives = 84/217 (38%), Gaps = 46/217 (21%)

Query: 339 ELLGKGCVGATYK---VVLDGGDVVVVKRIRE---------RKKKREVDEWLRVIGGLRH 386
           + LG G +   Y     +L+    V +K I           ++ +REV         L H
Sbjct: 17  DKLGGGGMSTVYLAEDTILN--IKVAIKAIFIPPREKEETLKRFEREV----HNSSQLSH 70

Query: 387 SNIVSIRAYCNGKDE--LFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKG 444
            NIVS+      +++   +LV +Y+   +L   +  S G    P+  +  +   +    G
Sbjct: 71  QNIVSM--IDVDEEDDCYYLVMEYIEGPTLSEYIE-SHG----PLSVDTAINFTNQILDG 123

Query: 445 LAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV------HQLFHTPFFINDA-YNA 497
           +   H      + H  +   NI++D      I D G+        L  T   +    Y +
Sbjct: 124 IKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFS 180

Query: 498 PELKFNNNNNYSQRKFW-QRCDVYSFGVVLLEILTGK 533
           PE         ++ +   +  D+YS G+VL E+L G+
Sbjct: 181 PEQ--------AKGEATDECTDIYSIGIVLYEMLVGE 209

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 47/232 (20%), Positives = 84/232 (36%), Gaps = 46/232 (19%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR----VIGGLRHSNIVSIR 393
           + LG G  G               +K IR+       +  L     V+  L H NI+ + 
Sbjct: 43  KKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLY 102

Query: 394 AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRL--KLASDSAK----GLAF 447
            +   K   +LV +    G L   +   R           +     A+   K    G+ +
Sbjct: 103 DFFEDKRNYYLVMECYKGGELFDEII-HRM----------KFNEVDAAVIIKQVLSGVTY 151

Query: 448 LHGYNKAH--------LFHGHLSSSNIVVDQLGNACISDIG--VHQLFHTPFFINDAYNA 497
           LH +N  H        L       + I +   G + + +    + +   T +     Y A
Sbjct: 152 LHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAY-----YIA 206

Query: 498 PELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQ 548
           PE+         ++K+ ++CDV+S GV+L  +L G     G  +  I++ V+
Sbjct: 207 PEV--------LRKKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVE 250

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 53/247 (21%), Positives = 99/247 (40%), Gaps = 50/247 (20%)

Query: 339 ELLGKGCVGATYKVVLDG-----GDVVVVKRIRERKKK--------REVDEWLRVIGGLR 385
             +G+G    +Y VV        G +V +K+  E +          RE+    R++  L+
Sbjct: 9   GKIGEG----SYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREI----RMLKQLK 60

Query: 386 HSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLK---LASDSA 442
           H N+V++      K  L LV++Y  H ++   L   R    +P    K +    L     
Sbjct: 61  HPNLVNLLEVFRRKRRLHLVFEYCDH-TVLHEL--DRYQRGVPEHLVKSITWQTL----- 112

Query: 443 KGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP--FFINDA----YN 496
           + + F H   K +  H  +   NI++ +     + D G  +L   P  ++ ++     Y 
Sbjct: 113 QAVNFCH---KHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYR 169

Query: 497 APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELG-IVKWVQMMG-QD 553
           +PEL    +  Y         DV++ G V  E+L+G  +  G  ++  +    + +G   
Sbjct: 170 SPELLV-GDTQYG-----PPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLI 223

Query: 554 ESAWEVF 560
               +VF
Sbjct: 224 PRHQQVF 230

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 43/240 (17%)

Query: 339 ELLGKGCVGATYKVVLDG----GDVVVVKRIRERKKK--------REVDEWLRVIGGLRH 386
           E +G+G    TY VV       G +V +KRIR   +         RE+     ++  L H
Sbjct: 27  EKVGEG----TYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREI----SLLKELHH 78

Query: 387 SNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLA 446
            NIVS+    + +  L LV++++    L  +L  ++    +     K         +G+A
Sbjct: 79  PNIVSLIDVIHSERCLTLVFEFMEK-DLKKVLDENKTG--LQDSQIK--IYLYQLLRGVA 133

Query: 447 FLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF--FINDA----YNAPEL 500
             H   +  + H  L   N++++  G   ++D G+ + F  P   + ++     Y AP++
Sbjct: 134 HCH---QHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDV 190

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELG-IVKWVQMMGQ-DESAW 557
               +  YS        D++S G +  E++TGK +  G  +   + K   ++G  +   W
Sbjct: 191 LM-GSKKYS-----TSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREW 244

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 19/136 (13%), Positives = 37/136 (27%), Gaps = 35/136 (25%)

Query: 75  LEDLDLTG-------PAEVLSRLTQLRLLSLKNNLLSS------------------SNLN 109
           L ++ +           E    L  L+ L + N  +                     N+N
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 110 LSSWPH---------LKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELT 160
           + +               L+L+ N       +   +   L  ++LS N    E+P     
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 161 RLPNLLTLRLEDNRFT 176
                + L +   R  
Sbjct: 200 GASGPVILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 18/103 (17%), Positives = 29/103 (28%), Gaps = 12/103 (11%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLYLSHNRFT 127
              L L             +      L    NN L     +          L +S  R  
Sbjct: 156 SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

Query: 128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRL 170
                G+ +L+ LR     +     ++P   L +L  L+   L
Sbjct: 216 SLPSYGLENLKKLRARSTYNLK---KLPT--LEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 24/186 (12%), Positives = 40/186 (21%), Gaps = 52/186 (27%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNN-------------LLSSSNLNLSSW-- 113
             +L               S    L  + +  N             L     + +     
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 114 ------------PHLKHLYLSHNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELT 160
                       P+L++L +S+       P            +D+  N     I      
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 161 RLPNLL-TLRLEDNRFT----GTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSF 215
            L      L L  N                  ++ D    NN L  ++P          F
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD----NNNLE-ELPN-------DVF 198

Query: 216 AGNKNL 221
            G    
Sbjct: 199 HGASGP 204

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 7/80 (8%)

Query: 100 NNLLSSSNLNLSSWP-----HLKHLYLSHNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGE 153
           N +       ++  P     +   L     +       G  S    L ++++S N     
Sbjct: 11  NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 154 IPMTELTRLPNLLTLRLEDN 173
           I     + LP L  +R+E  
Sbjct: 70  IEADVFSNLPKLHEIRIEKA 89

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 18/135 (13%)

Query: 84  AEVLSRLTQLRLLSLKNNLLSSSNLNL------SSWPHLKHLYLSHNRFTGT----FPSG 133
           +  L     L  L+L++N L    ++       +    ++ L L +   TG       S 
Sbjct: 49  SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108

Query: 134 VSSLRHLRRVDLSHNA--YEGEIPMTELTRLPN--LLTLRLEDNRFTGT----LYSVNSS 185
           + +L  L+ + LS N     G   + E    P   L  L+LE    +      L SV  +
Sbjct: 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA 168

Query: 186 SRSILDFNVSNNQLS 200
                +  VSNN ++
Sbjct: 169 KPDFKELTVSNNDIN 183

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 18/135 (13%)

Query: 84  AEVLSRLTQLRLLSLKNNLLSSSNLN------LSSWPHLKHLYLSHNRFTGT----FPSG 133
           +  L  L  L+ L L +NLL  + L       L     L+ L L +   +        S 
Sbjct: 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165

Query: 134 VSSLRHLRRVDLSHNA--YEGEIPMTELTRLPN--LLTLRLEDNRFT----GTLYSVNSS 185
           + +    + + +S+N     G   + +  +     L  L+LE    T      L  + +S
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225

Query: 186 SRSILDFNVSNNQLS 200
             S+ +  + +N+L 
Sbjct: 226 KASLRELALGSNKLG 240

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 18/135 (13%)

Query: 84  AEVLSRLTQLRLLSLKNNLLSSSNLNL------SSWPHLKHLYLSHNRFTGT----FPSG 133
             VL     L+ LSL  N L      L           L+ L++    FT      F S 
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336

Query: 134 VSSLRHLRRVDLSHNA--YEGEIPMTELTRLPN--LLTLRLEDNRFT----GTLYSVNSS 185
           ++  R L  + +S+N     G   + +    P   L  L L D   +     +L +   +
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396

Query: 186 SRSILDFNVSNNQLS 200
           + S+ + ++SNN L 
Sbjct: 397 NHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.0 bits (115), Expect = 6e-06
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 18/135 (13%)

Query: 84  AEVLSRLTQLRLLSLKNNLLSS------SNLNLSSWPHLKHLYLSHNRFT----GTFPSG 133
             +++    LR L+L +N L            L     L+ L++     T    G     
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279

Query: 134 VSSLRHLRRVDLSHNA--YEGEIPMTELTRLPN--LLTLRLEDNRFTGT----LYSVNSS 185
           + +   L+ + L+ N    EG   + E    P   L +L ++   FT        SV + 
Sbjct: 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339

Query: 186 SRSILDFNVSNNQLS 200
           +R +L+  +SNN+L 
Sbjct: 340 NRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 21/124 (16%), Positives = 45/124 (36%), Gaps = 14/124 (11%)

Query: 91  TQLRLLSLKNNLLSSSNLN--LSSWPHLKHLYLSHNRFTGT----FPSGVSSLRHLRRVD 144
             ++ L ++   LS +     L      + + L     T        S +     L  ++
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 145 LSHNA--YEGEIPMTELTRLPN--LLTLRLEDNRFTGT----LYSVNSSSRSILDFNVSN 196
           L  N     G   + +  + P+  +  L L++   TG     L S   +  ++ + ++S+
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 197 NQLS 200
           N L 
Sbjct: 123 NLLG 126

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 45/218 (20%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWL-----RVIGGLRHSNIVS- 391
             +G G  GA Y    +   +VV +K++    K+            R +  LRH N +  
Sbjct: 60  REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQY 119

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLAS---DSAKGLAFL 448
              Y       +LV +Y   GS   LL   + P  +         +A+    + +GLA+L
Sbjct: 120 RGCYLRE-HTAWLVMEYCL-GSASDLLEVHKKP--LQEVE-----IAAVTHGALQGLAYL 170

Query: 449 HGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-HQLFH------TPFFINDAYNAPEL- 500
           H +N     H  + + NI++ + G   + D G    +        TP+++     APE+ 
Sbjct: 171 HSHNM---IHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWM-----APEVI 222

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD 538
              +   Y       + DV+S G+  +E     +A+  
Sbjct: 223 LAMDEGQYD-----GKVDVWSLGITCIE-----LAERK 250

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 51.4 bits (124), Expect = 4e-07
 Identities = 59/242 (24%), Positives = 105/242 (43%), Gaps = 42/242 (17%)

Query: 339 ELLGKGCVGATYKVV-----LDGGDVVVVKRIRERKKK-------REVDEWLRVIGGLRH 386
           E LG G    TY  V        G  V +K ++   ++       RE+     ++  L+H
Sbjct: 11  EKLGNG----TYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREI----SLMKELKH 62

Query: 387 SNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRL--KLASDSAKG 444
            NIV +    + +++L LV++++ +  L   +  SR  G  P      L         +G
Sbjct: 63  ENIVRLYDVIHTENKLTLVFEFMDN-DLKKYMD-SRTVGNTPRGLELNLVKYFQWQLLQG 120

Query: 445 LAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF--FINDA----YNAP 498
           LAF H   +  + H  L   N+++++ G   + D G+ + F  P   F ++     Y AP
Sbjct: 121 LAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAP 177

Query: 499 ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELG-IVKWVQMMGQ-DES 555
           ++    +  YS        D++S G +L E++TGK +  G  +   +     +MG  +ES
Sbjct: 178 DVLM-GSRTYS-----TSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNES 231

Query: 556 AW 557
            W
Sbjct: 232 LW 233

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 31/163 (19%)

Query: 384 LRHSNIVSIR--AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDS 441
           L H N+V +        +D L++V++ +  G +  +         +  D  +      D 
Sbjct: 93  LDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL----KPLSED--QARFYFQDL 146

Query: 442 AKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----------TPFF 490
            KG+ +LH      + H  +  SN++V + G+  I+D GV   F            TP  
Sbjct: 147 IKGIEYLHYQK---IIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTP-- 201

Query: 491 INDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
              A+ APE        +S +      DV++ GV L   + G+
Sbjct: 202 ---AFMAPESLSETRKIFSGKA----LDVWAMGVTLYCFVFGQ 237

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 50.2 bits (121), Expect = 7e-07
 Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 35/236 (14%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKK--------REVDEWLRVIGGLRHSNIV 390
           E +G+G  G  YK   + G+   +K+IR  K+         RE+     ++  L+HSNIV
Sbjct: 8   EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREI----SILKELKHSNIV 63

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
            +    + K  L LV+++L    L  LL    G   +     K          G+A+ H 
Sbjct: 64  KLYDVIHTKKRLVLVFEHLDQ-DLKKLLDVCEGG--LESVTAK--SFLLQLLNGIAYCH- 117

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF--FINDA----YNAPELKFNN 504
                + H  L   N+++++ G   I+D G+ + F  P   + ++     Y AP++    
Sbjct: 118 --DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLM-G 174

Query: 505 NNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELG-IVKWVQMMGQ-DESAW 557
           +  YS        D++S G +  E++ G  +  G  E   +++  +++G  +   W
Sbjct: 175 SKKYS-----TTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNW 225

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 49.4 bits (119), Expect = 1e-06
 Identities = 49/245 (20%), Positives = 94/245 (38%), Gaps = 51/245 (20%)

Query: 339 ELLGKGCVGATYKVV-----LDGGDVVVVKRIRERKKK--------REVDEWLRVIGGLR 385
           E +G+G    TY  V      +  ++V +KR+R             RE+     ++  L+
Sbjct: 8   EKIGEG----TYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREI----CLLKELK 59

Query: 386 HSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLK---LASDSA 442
           H NIV +    +   +L LV+++     L          G +  +  K      L     
Sbjct: 60  HKNIVRLHDVLHSDKKLTLVFEFCDQ-DLKKYFD--SCNGDLDPEIVKSFLFQLL----- 111

Query: 443 KGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF--FINDA----YN 496
           KGL F H     ++ H  L   N+++++ G   +++ G+ + F  P   +  +     Y 
Sbjct: 112 KGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYR 168

Query: 497 APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA--KGDGELG-IVKWVQMMGQ- 552
            P++ F     YS        D++S G +  E+         G+     + +  +++G  
Sbjct: 169 PPDVLF-GAKLYS-----TSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTP 222

Query: 553 DESAW 557
            E  W
Sbjct: 223 TEEQW 227

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 48/218 (22%), Positives = 80/218 (36%), Gaps = 46/218 (21%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVD-EWLR----VIGGLRHSNIVSI 392
            +LGKG  G          G    VK I +R+ K++ D E L     ++  L H NI+ +
Sbjct: 32  RVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKL 91

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRL--KLASDSAK----GLA 446
             +   K   +LV +    G L   +  SR           R     A+   +    G+ 
Sbjct: 92  YEFFEDKGYFYLVGEVYTGGELFDEII-SRK----------RFSEVDAARIIRQVLSGIT 140

Query: 447 FLHGYNKAH--------LFHGHLSSSNIVVDQLGNACISDIG--VHQLFHTPFFINDAYN 496
           ++H     H        L       +NI +   G +   +    +     T +     Y 
Sbjct: 141 YMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAY-----YI 195

Query: 497 APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM 534
           APE+            + ++CDV+S GV+L  +L+G  
Sbjct: 196 APEV--------LHGTYDEKCDVWSTGVILYILLSGCP 225

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 48/213 (22%), Positives = 92/213 (43%), Gaps = 40/213 (18%)

Query: 339 ELLGKGCVGATYKVVLDG-----GDVVVVKRIRERKKK-------REVDEWLRVIGGLRH 386
           + LG+G    TY  V  G      ++V +K IR   ++       REV     ++  L+H
Sbjct: 8   DKLGEG----TYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREV----SLLKDLKH 59

Query: 387 SNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLA 446
           +NIV++    + +  L LV++YL    L   L        + +   K         +GLA
Sbjct: 60  ANIVTLHDIIHTEKSLTLVFEYLDK-DLKQYLDDCGNI--INMHNVK--LFLFQLLRGLA 114

Query: 447 FLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF--FINDA----YNAPEL 500
           + H   +  + H  L   N+++++ G   ++D G+ +    P   + N+     Y  P++
Sbjct: 115 YCH---RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDI 171

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
               + +YS      + D++  G +  E+ TG+
Sbjct: 172 LL-GSTDYS-----TQIDMWGVGCIFYEMATGR 198

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 43/225 (19%), Positives = 88/225 (39%), Gaps = 50/225 (22%)

Query: 349 TYKVV-----LDGGDVVVVKRIRERKKK--------REVDEWLRVIGGLRHSNIVSIR-- 393
           T+  V        G  V +K++    +K        RE+    +++  L+H N+V++   
Sbjct: 29  TFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREI----KILQLLKHENVVNLIEI 84

Query: 394 ------AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAF 447
                  Y   K  ++LV+D+  H  L  LL  S    +  +   K  ++      GL +
Sbjct: 85  CRTKASPYNRCKGSIYLVFDFCEH-DLAGLL--SNVLVKFTLSEIK--RVMQMLLNGLYY 139

Query: 448 LHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA----------YNA 497
           +H   +  + H  + ++N+++ + G   ++D G+ + F                   Y  
Sbjct: 140 IH---RNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRP 196

Query: 498 PELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGEL 541
           PEL      +Y         D++  G ++ E+ T   + +G+ E 
Sbjct: 197 PELLL-GERDYG-----PPIDLWGAGCIMAEMWTRSPIMQGNTEQ 235

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 42/218 (19%), Positives = 74/218 (33%), Gaps = 49/218 (22%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR---------ERKKKREVDEWLRVIGGLRHSN 388
             LGKG     +++   D  +V   K +            K   E+    R    L H +
Sbjct: 47  RFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEI-SIHRS---LAHQH 102

Query: 389 IVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRL--KLASDSAKGLA 446
           +V    +    D +F+V +     SL  L    +    +     +    ++      G  
Sbjct: 103 VVGFHGFFEDNDFVFVVLELCRRRSLLELH---KRRKALTEPEARYYLRQIVL----GCQ 155

Query: 447 FLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----------TPFFINDAY 495
           +LH   +  + H  L   N+ +++     I D G+                TP      Y
Sbjct: 156 YLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTP-----NY 207

Query: 496 NAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
            APE+   +   +S        DV+S G ++  +L GK
Sbjct: 208 IAPEVL--SKKGHS-----FEVDVWSIGCIMYTLLVGK 238

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 51/225 (22%)

Query: 332 DLLKSSAELLGKGCVGATYKVVL----DGGDVVVVKRIRER--KKKREVD------EWLR 379
            + +    ++G+G  G   +V      D G +  +K + ++  K K+           L 
Sbjct: 192 SVHR----IIGRGGFG---EVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLS 244

Query: 380 VIGGLRHSNIVSIRAYCN-GKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKL- 437
           ++       IV + +Y     D+L  + D +  G LH  L       +  V     ++  
Sbjct: 245 LVSTGDCPFIVCM-SYAFHTPDKLSFILDLMNGGDLHYHLS------QHGVFSEADMRFY 297

Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH---------TP 488
           A++   GL  +H      + +  L  +NI++D+ G+  ISD+G+   F          T 
Sbjct: 298 AAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTH 354

Query: 489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
                 Y APE+       Y     W     +S G +L ++L G 
Sbjct: 355 -----GYMAPEV-LQKGVAYDSSADW-----FSLGCMLFKLLRGH 388

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 42/223 (18%)

Query: 332 DLLKSSAELLGKGCVGATYKVVL----DGGDVVVVKRIRERK--KKREVDEWL---RVIG 382
           ++LK    ++G+G      +V +      G V  +K + +    K+ EV  +     V+ 
Sbjct: 64  EILK----VIGRGAFS---EVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLV 116

Query: 383 GLRHSNIVSIRAYC-NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNK----RLKL 437
                 I  +  +    ++ L+LV +Y   G L +LL  S+   R+P +  +     + +
Sbjct: 117 NGDRRWITQLH-FAFQDENYLYLVMEYYVGGDLLTLL--SKFGERIPAEMARFYLAEIVM 173

Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIG------VHQLFHTPFFI 491
           A      +  +H        H  +   NI++D+ G+  ++D G            +   +
Sbjct: 174 A------IDSVHRLG---YVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAV 224

Query: 492 N--DAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
              D Y +PE+            +   CD ++ GV   E+  G
Sbjct: 225 GTPD-YLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYG 266

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 18/111 (16%)

Query: 75  LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSW-----PHLKHLYLSH 123
           L  L L        P  V   LTQL  L L  N L S    L S        LK L L+ 
Sbjct: 85  LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS----LPSGVFDRLTKLKELRLNT 140

Query: 124 NRFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDN 173
           N+   + P+G    L +L+ + LS N  +  +P     RL  L T+ L  N
Sbjct: 141 NQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 72  KLVLEDLDLTG-PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWP-HLKHLYLSHNRFTGT 129
           KL L+   L          LT+L  L+L  N L + +  +      L  L L++N+   +
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-S 97

Query: 130 FPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT 176
            P GV   L  L ++ L  N  +  +P     RL  L  LRL  N+  
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ 144

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 48/174 (27%)

Query: 383 GLRHSNIVSIRAYCNGKDEL------FLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLK 436
            L H  IV++  Y  G+ E       ++V +Y+   +L  ++H     G M     + ++
Sbjct: 68  ALNHPAIVAV--YDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE---GPMTPK--RAIE 120

Query: 437 LASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV--------HQLFHTP 488
           + +D+ + L F H   +  + H  +  +NI++       + D G+        + +  T 
Sbjct: 121 VIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTA 177

Query: 489 FFINDA-YNAPELKFNNNNNYSQRKFWQ--------RCDVYSFGVVLLEILTGK 533
             I  A Y +PE               Q        R DVYS G VL E+LTG+
Sbjct: 178 AVIGTAQYLSPE---------------QARGDSVDARSDVYSLGCVLYEVLTGE 216

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 72  KLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSS-SNLNLSSWPHLKHLYLSHNRFTGTF 130
           +L L+    T   + LS    L L+ L NN +S+ SN + S+   L  L LS+NR     
Sbjct: 35  ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CI 93

Query: 131 PSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDN 173
           P      L+ LR + L  N     +P      L  L  L +  N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 47.6 bits (114), Expect = 7e-06
 Identities = 51/246 (20%), Positives = 96/246 (39%), Gaps = 50/246 (20%)

Query: 339 ELLGKGCVGATYKVV-----LDGGDVVVVKRIRERKKK--------REVDEWLRVIGGLR 385
             LG+G    TY  V         + V +KRIR   ++        REV     ++  L+
Sbjct: 40  TKLGEG----TYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREV----SLLKELQ 91

Query: 386 HSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGL 445
           H NI+ +++  +    L L+++Y  +  L   +  +     + +   K          G+
Sbjct: 92  HRNIIELKSVIHHNHRLHLIFEYAEN-DLKKYMDKN---PDVSMRVIK--SFLYQLINGV 145

Query: 446 AFLHGYNKAHLFHGHLSSSNIVVDQLGNAC-----ISDIGVHQLFHTPF--FINDA---- 494
            F H        H  L   N+++     +      I D G+ + F  P   F ++     
Sbjct: 146 NFCH---SRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEIITLW 202

Query: 495 YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELG-IVKWVQMMGQ 552
           Y  PE+    + +YS        D++S   +  E+L    +  GD E+  + K  +++G 
Sbjct: 203 YRPPEILL-GSRHYS-----TSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGL 256

Query: 553 -DESAW 557
            D++ W
Sbjct: 257 PDDTTW 262

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 48/209 (22%), Positives = 82/209 (39%), Gaps = 34/209 (16%)

Query: 341 LGKGCVGATYKVVL----DGGDVVVVKRI-RERKKKREVDEWLRVIG---GLRHSNIVSI 392
           +GKG      KV L      G  V +K I + +     + +  R +     L H NIV +
Sbjct: 23  IGKGNFA---KVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKL 79

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRL--KLASDSAKGLAFLHG 450
                 +  L+L+ +Y   G +   L      GRM     +    ++ S     + + H 
Sbjct: 80  FEVIETEKTLYLIMEYASGGEVFDYLVAH---GRMKEKEARSKFRQIVS----AVQYCH- 131

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFIND-----AYNAPELKFNNN 505
             +  + H  L + N+++D   N  I+D G    F     ++       Y APEL     
Sbjct: 132 --QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELF--QG 187

Query: 506 NNYSQRKFWQRCDVYSFGVVLLEILTGKM 534
             Y   +     DV+S GV+L  +++G +
Sbjct: 188 KKYDGPE----VDVWSLGVILYTLVSGSL 212

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 34/111 (30%), Positives = 44/111 (39%), Gaps = 18/111 (16%)

Query: 72  KLVLEDLDLTG-PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWP--------HLKHLYLS 122
           +L L    L   P  V   LTQL +L L  N        L+  P        HLK L++ 
Sbjct: 68  ELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-------QLTVLPSAVFDRLVHLKELFMC 120

Query: 123 HNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDN 173
            N+ T   P G+  L HL  + L  N  +  IP     RL +L    L  N
Sbjct: 121 CNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGN 169

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 47.2 bits (113), Expect = 7e-06
 Identities = 41/214 (19%), Positives = 75/214 (35%), Gaps = 41/214 (19%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRI-RERKKKREVDEWLR----VIGGLRHSNIVSI 392
             LGKG     +++   D  +V   K + +    K    E +     +   L H ++V  
Sbjct: 21  RFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGF 80

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRL--KLASDSAKGLAFLHG 450
             +    D +F+V +     SL  L    +    +     +    ++      G  +LH 
Sbjct: 81  HGFFEDNDFVFVVLELCRRRSLLELH---KRRKALTEPEARYYLRQIVL----GCQYLH- 132

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----------TPFFINDAYNAPE 499
             +  + H  L   N+ +++     I D G+                TP      Y APE
Sbjct: 133 --RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTP-----NYIAPE 185

Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           +   +   +S        DV+S G ++  +L GK
Sbjct: 186 VL--SKKGHS-----FEVDVWSIGCIMYTLLVGK 212

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 46.8 bits (112), Expect = 8e-06
 Identities = 43/215 (20%), Positives = 84/215 (39%), Gaps = 44/215 (20%)

Query: 340 LLGKGCVGATYKVV-LDGGDVVVVKRIR---------ERKKKREVDEWLRVIGGLRHSNI 389
           LLGKG     Y+   +  G  V +K I           ++ + EV +       L+H +I
Sbjct: 18  LLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEV-KIHCQ---LKHPSI 73

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH 449
           + +  Y    + ++LV +   +G ++  L     P       +   ++ +    G+ +LH
Sbjct: 74  LELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIIT----GMLYLH 129

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIG--VH-----QLFHT----PFFINDAYNAP 498
                 + H  L+ SN+++ +  N  I+D G         +  +T    P      Y +P
Sbjct: 130 ---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTP-----NYISP 181

Query: 499 ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           E+     + +         DV+S G +   +L G+
Sbjct: 182 EIA--TRSAHG-----LESDVWSLGCMFYTLLIGR 209

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 32/167 (19%), Positives = 53/167 (31%), Gaps = 30/167 (17%)

Query: 384 LRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAK 443
               N V      + K  L++        +L   +  +R       +    L +    A+
Sbjct: 118 FSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWM--NRRCSLEDREHGVCLHIFIQIAE 175

Query: 444 GLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV----------HQLFHTPFFIND 493
            + FLH      L H  L  SNI         + D G+            +         
Sbjct: 176 AVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYAT 232

Query: 494 A--------YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
                    Y +PE    + NNYS +      D++S G++L E+L  
Sbjct: 233 HTGQVGTKLYMSPEQI--HGNNYSHK-----VDIFSLGLILFELLYS 272

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 46/242 (19%), Positives = 80/242 (33%), Gaps = 62/242 (25%)

Query: 339 ELLGKGCVGATYK-VVLDGGDVVVVKRIRE--RKKKREVDEWLRVIGGLRHSNIVSIRA- 394
           + LG G  G   +   ++ G    +K++ +  R K RE    L ++  L H NI+ +   
Sbjct: 13  KTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRYKNRE----LDIMKVLDHVNIIKLVDY 68

Query: 395 -YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGR------------------MPVDWNKRL 435
            Y  G +E         H  L    +G     +                  +P   +K L
Sbjct: 69  FYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVL 128

Query: 436 KLASDSA----------------KGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNAC---I 476
           K    S                 + + F+H      + H  +   N++V+         +
Sbjct: 129 KSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLG---ICHRDIKPQNLLVNS--KDNTLKL 183

Query: 477 SDIG-----VHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
            D G     +       +  +  Y APEL       Y+        D++S G V  E++ 
Sbjct: 184 CDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATE-YTPS-----IDLWSIGCVFGELIL 237

Query: 532 GK 533
           GK
Sbjct: 238 GK 239

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 55/246 (22%), Positives = 102/246 (41%), Gaps = 46/246 (18%)

Query: 339 ELLGKGCVGATYKVV------LDGGDVVVVKRIRERKKK--------REVDEWLRVIGGL 384
             +G+G     Y  V       +GG  V +KR+R +  +        REV   LR +   
Sbjct: 17  AEIGEG----AYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREV-AVLRHLETF 71

Query: 385 RHSNIVSIR-----AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLAS 439
            H N+V +      +  + + +L LV++++    L + L     PG +P +  K   +  
Sbjct: 72  EHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQ-DLTTYLDKVPEPG-VPTETIK--DMMF 127

Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF-FINDA---- 494
              +GL FLH +    + H  L   NI+V   G   ++D G+ +++       +      
Sbjct: 128 QLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLW 184

Query: 495 YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELG-IVKWVQMMGQ 552
           Y APE+         Q  +    D++S G +  E+   K + +G  ++  + K + ++G 
Sbjct: 185 YRAPEVLL-------QSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGL 237

Query: 553 -DESAW 557
             E  W
Sbjct: 238 PGEEDW 243

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 44/216 (20%), Positives = 74/216 (34%), Gaps = 47/216 (21%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR----VIGGLRHSNIVSIR 393
            +LGKG  G   K           VK I +   K +    +     ++  L H NI+ + 
Sbjct: 28  CMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLF 87

Query: 394 AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRL--KLASDSAK----GLAF 447
                    ++V +    G L   +   R           R     A+   K    G+ +
Sbjct: 88  EILEDSSSFYIVGELYTGGELFDEII-KRK----------RFSEHDAARIIKQVFSGITY 136

Query: 448 LHGYNKAH--------LFHGHLSSSNIVVDQLGNACISDIG--VHQLFHTPFFINDAYNA 497
           +H +N  H        L        +I +   G +        +     T ++I     A
Sbjct: 137 MHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYI-----A 191

Query: 498 PE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
           PE L+      Y      ++CDV+S GV+L  +L+G
Sbjct: 192 PEVLR----GTYD-----EKCDVWSAGVILYILLSG 218

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 54/219 (24%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKK------REVDEWLRVIGGLRHSNIVS 391
           E LG G  G  ++ V    G V V K I             E+     ++  L H  +++
Sbjct: 57  EELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEIS----IMNQLHHPKLIN 112

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRL--KLASDSAK----GL 445
           +      K E+ L+ ++L  G L   +             + ++      +  +    GL
Sbjct: 113 LHDAFEDKYEMVLILEFLSGGELFDRI----------AAEDYKMSEAEVINYMRQACEGL 162

Query: 446 AFLHGYNKAHLFHGHLSSSNIVVDQLGNAC--ISDIG----------VHQLFHTPFFIND 493
             +H ++  HL    +   NI+ +    +   I D G          V     T  F   
Sbjct: 163 KHMHEHSIVHL---DIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFA-- 217

Query: 494 AYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
              APE+   +             D+++ GV+   +L+G
Sbjct: 218 ---APEIV--DREPVG-----FYTDMWAIGVLGYVLLSG 246

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 58/230 (25%), Positives = 89/230 (38%), Gaps = 65/230 (28%)

Query: 339 ELLGKGCVGATYKVVL----DGGDVVVVKRIRERKK-----------KREVDEWLRVIGG 383
           +LLG+G  G   KV      +      VK I ++KK           K+E+ + LR    
Sbjct: 11  DLLGEGSYG---KVKEVLDSETLCRRAVK-ILKKKKLRRIPNGEANVKKEI-QLLRR--- 62

Query: 384 LRHSNIVSIR--AYCNGKDELFLVYDYLPHGS---LHSLLHGSRGPGRMPVDWNKRL--K 436
           LRH N++ +    Y   K ++++V +Y   G    L S+        R PV        +
Sbjct: 63  LRHKNVIQLVDVLYNEEKQKMYMVMEYCVCGMQEMLDSVPEK-----RFPVCQAHGYFCQ 117

Query: 437 LASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV---------HQLFHT 487
           L      GL +LH      + H  +   N+++   G   IS +GV              T
Sbjct: 118 LID----GLEYLHSQG---IVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRT 170

Query: 488 ----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
               P     A+  PE+  N  + +S  K     D++S GV L  I TG 
Sbjct: 171 SQGSP-----AFQPPEI-ANGLDTFSGFK----VDIWSAGVTLYNITTGL 210

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 22/138 (15%), Positives = 43/138 (31%), Gaps = 22/138 (15%)

Query: 84  AEVLSRL-TQLRLLSLKNNLLSSSNLN-----LSSWPHLKHLYLSHNRFTGTFPSGVSSL 137
           A + S +   +  L+L  N L   +L        S  HL+ +YL ++           +L
Sbjct: 217 AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276

Query: 138 -------RHLRRVDLSHNA--YEGEIPMTELTRLPN--LLTLRLEDNRFT-----GTLYS 181
                  + +  VD +         IP++ L R  +       L +          T   
Sbjct: 277 GAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIE 336

Query: 182 VNSSSRSILDFNVSNNQL 199
             +    + +   +   L
Sbjct: 337 DLNIPDELRESIQTCKPL 354

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 51/225 (22%), Positives = 91/225 (40%), Gaps = 51/225 (22%)

Query: 332 DLLKSSAELLGKGCVGATYKVVL----DGGDVVVVKRIRERK--KKREVD----EWLRVI 381
           ++L+     +GKG  G   KV +    D   +  +K + ++K  ++ EV     E L+++
Sbjct: 18  EILR----AIGKGSFG---KVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKE-LQIM 69

Query: 382 GGLRHSNIVSIRAYC-NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKL-AS 439
            GL H  +V++  Y    ++++F+V D L  G L   L   +          + +KL   
Sbjct: 70  QGLEHPFLVNLW-YSFQDEEDMFMVVDLLLGGDLRYHL---QQNVHFK---EETVKLFIC 122

Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH----------TPF 489
           +    L +L       + H  +   NI++D+ G+  I+D  +  +            T  
Sbjct: 123 ELVMALDYLQNQR---IIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITTMAGTK- 178

Query: 490 FINDAYNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
                Y APE         YS        D +S GV   E+L G+
Sbjct: 179 ----PYMAPEMFSSRKGAGYS-----FAVDWWSLGVTAYELLRGR 214

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 25/172 (14%), Positives = 43/172 (25%), Gaps = 40/172 (23%)

Query: 84  AEVLSRLTQLRLLSLKNNLLSSSNLN-----------LSSWPHLKHLYLSHNRFTGTFPS 132
           +E ++    L +    +                    L   P L  + LS N F    P+
Sbjct: 53  SENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG---PT 109

Query: 133 GVSSL-------RHLRRVDLSHN------------AYEGEIPMTELTRLPNLLTLRLEDN 173
               L         L  + L +N            A +      +    P L ++    N
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169

Query: 174 RFT--GTLY--SVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNL 221
           R              S R +    +  N +    P  +        A  + L
Sbjct: 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIR---PEGIEHLLLEGLAYCQEL 218

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 32/143 (22%)

Query: 84  AEVLSRLTQLRLLSLKNN---------LLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGV 134
           A+       L  + +  N         LL      L+    LK L L  N FT     G 
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG---LAYCQELKVLDLQDNTFT---HLGS 233

Query: 135 SSL-------RHLRRVDLSHNA--YEGEIPMTE-LTRLPN--LLTLRLEDNRFTGT---- 178
           S+L        +LR + L+       G   + +  ++L N  L TLRL+ N         
Sbjct: 234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293

Query: 179 -LYSVNSSSRSILDFNVSNNQLS 200
               ++     +L   ++ N+ S
Sbjct: 294 LKTVIDEKMPDLLFLELNGNRFS 316

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 41/217 (18%), Positives = 76/217 (35%), Gaps = 50/217 (23%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKK------REVDEWLRVIGGLRHSNIVS 391
           E LG G  G  ++V     G+    K +    +       +E+      +  LRH  +V+
Sbjct: 163 EELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQ----TMSVLRHPTLVN 218

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRL--KLASDSAK----GL 445
           +       +E+ ++Y+++  G L   +           D + ++    A +  +    GL
Sbjct: 219 LHDAFEDDNEMVMIYEFMSGGELFEKV----------ADEHNKMSEDEAVEYMRQVCKGL 268

Query: 446 AFLHGYNKAH--------LFHGHLSSSNIVVDQLGNACISDIG--VHQLFHTPFFINDAY 495
             +H  N  H        +F    S+   ++D  G     D    V     T  F     
Sbjct: 269 CHMHENNYVHLDLKPENIMFTTKRSNELKLID-FGLTAHLDPKQSVKVTTGTAEFA---- 323

Query: 496 NAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
            APE+                 D++S GV+   +L+G
Sbjct: 324 -APEVA--EGKPVG-----YYTDMWSVGVLSYILLSG 352

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 45/213 (21%), Positives = 81/213 (38%), Gaps = 37/213 (17%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKK-----KREVD--EWLRVIGGLRHSNIV 390
           +++GKG  G   K         V +K +R  K+       E+   E LR        N++
Sbjct: 103 KVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVI 162

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
            +      ++ + + ++ L   +L+ L+  ++  G   +   +  K A    + L  LH 
Sbjct: 163 HMLENFTFRNHICMTFELL-SMNLYELIKKNKFQG-FSLPLVR--KFAHSILQCLDALH- 217

Query: 451 YNKAHLFHGHLSSSNIVVDQ----------LGNACISDIGVHQLFHTPFFINDAYNAPEL 500
             K  + H  L   NI++ Q           G++C     V+    + F     Y APE+
Sbjct: 218 --KNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRVYTYIQSRF-----YRAPEV 270

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
                            D++S G +L E+LTG 
Sbjct: 271 ILGARYGMP-------IDMWSLGCILAELLTGY 296

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 50/226 (22%)

Query: 332 DLLKSSAELLGKGCVGATYKVVL----DGGDVVVVKRIRERK--KKREVDEWL---RVIG 382
           ++LK    ++G+G  G   +V +    +   V  +K + + +  K+ E   +     V+ 
Sbjct: 77  EILK----VIGRGAFG---EVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLV 129

Query: 383 GLRHSNIVSIRAYC-NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNK----RLKL 437
                 I ++  Y     + L+LV DY   G L +LL  S+   R+P +  +     + +
Sbjct: 130 NGDSKWITTLH-YAFQDDNNLYLVMDYYVGGDLLTLL--SKFEDRLPEEMARFYLAEMVI 186

Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIG------VHQLFHTPFFI 491
           A      +  +H  +     H  +   NI++D  G+  ++D G            +   +
Sbjct: 187 A------IDSVHQLH---YVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAV 237

Query: 492 N--DAYNAPEL---KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
              D Y +PE+          Y        CD +S GV + E+L G
Sbjct: 238 GTPD-YISPEILQAMEGGKGRYGPE-----CDWWSLGVCMYEMLYG 277

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 48/248 (19%)

Query: 339 ELLGKGCVGATYKVV-----LDGGDVVVVKRIRERKKK-----------REVDEWLRVIG 382
             +G G     Y  V        G  V +K +R                REV   LR + 
Sbjct: 15  AEIGVG----AYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREV-ALLRRLE 69

Query: 383 GLRHSNIVSIR-----AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKL 437
              H N+V +      +  + + ++ LV++++    L + L  +  PG +P +  K   L
Sbjct: 70  AFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ-DLRTYLDKAPPPG-LPAETIK--DL 125

Query: 438 ASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF-FINDA-- 494
                +GL FLH      + H  L   NI+V   G   ++D G+ +++            
Sbjct: 126 MRQFLRGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALTPVVVT 182

Query: 495 --YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELG-IVKWVQMM 550
             Y APE+         Q  +    D++S G +  E+   K +  G+ E   + K   ++
Sbjct: 183 LWYRAPEVLL-------QSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLI 235

Query: 551 GQ-DESAW 557
           G   E  W
Sbjct: 236 GLPPEDDW 243

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 41/232 (17%), Positives = 72/232 (31%), Gaps = 70/232 (30%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKK--------------KREVDEWLRVIGG 383
           + LG G  G             V ++ I +RK               + E++    ++  
Sbjct: 141 KTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIE----ILKK 196

Query: 384 LRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDW-NKRLKLASDSA 442
           L H  I+ I+ + + +D  ++V + +  G L               D      +L   + 
Sbjct: 197 LNHPCIIKIKNFFDAED-YYIVLELMEGGEL--------------FDKVVGNKRLKEATC 241

Query: 443 K--------GLAFLHGYNKAH--------LFHGHLSSSNIVVDQLGNACISDIGVHQLFH 486
           K         + +LH     H        L         I         I+D G  ++  
Sbjct: 242 KLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIK--------ITDFGHSKILG 293

Query: 487 TPFFINDA-----YNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
               +        Y APE L       Y+     +  D +S GV+L   L+G
Sbjct: 294 ETSLMRTLCGTPTYLAPEVLVSVGTAGYN-----RAVDCWSLGVILFICLSG 340

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKK--KREVDEWLRVIGGLRHSNIVSIRAY 395
           E +G G      + +         VK I + K+    E++  LR      H NI++++  
Sbjct: 28  EDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRYGQ---HPNIITLKDV 84

Query: 396 CNGKDELFLVYDYLPHGSL 414
            +    +++V + +  G L
Sbjct: 85  YDDGKYVYVVTELMKGGEL 103

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 39/126 (30%), Positives = 50/126 (39%), Gaps = 41/126 (32%)

Query: 72  KLV-LEDLDLTG------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPH--------L 116
           +L  L  L LTG      P  V  +LT L+ L L  N        L S P         L
Sbjct: 83  ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-------QLQSLPDGVFDKLTNL 135

Query: 117 KHLYLSHNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLP--------NLLT 167
            +L L+HN+   + P GV   L +L  +DLS+N         +L  LP         L  
Sbjct: 136 TYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYN---------QLQSLPEGVFDKLTQLKD 185

Query: 168 LRLEDN 173
           LRL  N
Sbjct: 186 LRLYQN 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 20/101 (19%)

Query: 86  VLSRLTQLRLLSLKNNLLSSSNLNLSSWP-HLKHLYLSHNRFTGTFPSGV-SSLRHLRRV 143
            L  LT L  L L  N L S    +     +LK L L  N+   + P GV   L +L  +
Sbjct: 80  ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYL 138

Query: 144 DLSHNAYEGEIPMTELTRLP--------NLLTLRLEDNRFT 176
           +L+HN         +L  LP        NL  L L  N+  
Sbjct: 139 NLAHN---------QLQSLPKGVFDKLTNLTELDLSYNQLQ 170

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 339 ELLGKGCVGATYKVVLDG-GDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCN 397
             LG+G     Y+    G      +K +++   K+ V   + V+  L H NI+ ++    
Sbjct: 59  SELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFE 118

Query: 398 GKDELFLVYDYLPHGSL 414
              E+ LV + +  G L
Sbjct: 119 TPTEISLVLELVTGGEL 135

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 48/243 (19%), Positives = 84/243 (34%), Gaps = 57/243 (23%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLRVIGG-------------- 383
             LG G  G        +G     +K I++ +  +                         
Sbjct: 42  RKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLK 101

Query: 384 -LRHSNIVSIRAYCNGKDELFLVYDYLPHGSL-HSLLHGSRGPGRMPVDWNKRLKLASDS 441
            L H NI+ +      K   +LV ++   G L   +++  +               A++ 
Sbjct: 102 SLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHKFDECD----------AANI 151

Query: 442 AK----GLAFLHGYNKAH--------LFHGHLSSSNIVVDQLGNACISDIG--VHQLFHT 487
            K    G+ +LH +N  H        L     S  NI +   G +        +     T
Sbjct: 152 MKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGT 211

Query: 488 PFFINDAYNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVK 545
            ++I     APE LK         +K+ ++CDV+S GV++  +L G     G  +  I+K
Sbjct: 212 AYYI-----APEVLK---------KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIK 257

Query: 546 WVQ 548
            V+
Sbjct: 258 KVE 260

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 44.1 bits (105), Expect = 7e-05
 Identities = 47/217 (21%), Positives = 79/217 (36%), Gaps = 46/217 (21%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRA 394
             LG G  G  + V     G   V+K I + + +  +++      V+  L H NI+ I  
Sbjct: 28  RKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFE 87

Query: 395 YCNGKDELFLVYDYLPHGSL-HSLLHGSRGPGRMPVDWNKRLKLASDSAK----GLAFLH 449
                  +++V +    G L   ++        +           ++  K     LA+ H
Sbjct: 88  VFEDYHNMYIVMETCEGGELLERIVSAQARGKALSE------GYVAELMKQMMNALAYFH 141

Query: 450 GYNKAH--------LFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA-----YN 496
             +  H        LF      S I         I D G+ +LF +     +A     Y 
Sbjct: 142 SQHVVHKDLKPENILFQDTSPHSPI--------KIIDFGLAELFKSDEHSTNAAGTALYM 193

Query: 497 APE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
           APE  K     + +      +CD++S GVV+  +LTG
Sbjct: 194 APEVFK----RDVT-----FKCDIWSAGVVMYFLLTG 221

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 44.4 bits (105), Expect = 7e-05
 Identities = 42/193 (21%), Positives = 76/193 (39%), Gaps = 38/193 (19%)

Query: 384 LRHSNIVSIRAYCNGKDE--LFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDS 441
           L+H N++S++       +  ++L++DY  H  L  ++   R          K ++L    
Sbjct: 75  LKHPNVISLQKVFLSHADRKVWLLFDYAEH-DLWHIIKFHRASKAN----KKPVQLPRGM 129

Query: 442 AK--------GLAFLHGYNKAHLFHGHLSSSNIVVDQLGNAC----ISDIGVHQLFHTP- 488
            K        G+ +LH      + H  L  +NI+V   G       I+D+G  +LF++P 
Sbjct: 130 VKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPL 186

Query: 489 --FFINDA------YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDG 539
                 D       Y APEL      +Y+     +  D+++ G +  E+LT + +     
Sbjct: 187 KPLADLDPVVVTFWYRAPELLL-GARHYT-----KAIDIWAIGCIFAELLTSEPIFHCRQ 240

Query: 540 ELGIVKWVQMMGQ 552
           E           Q
Sbjct: 241 EDIKTSNPYHHDQ 253

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 34/232 (14%), Positives = 82/232 (35%), Gaps = 47/232 (20%)

Query: 325 KGFRNVGDLLKSSAELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR---- 379
           +   N  +    +++ LG+G      + +    G     K +++R++ ++    +     
Sbjct: 21  QSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIA 80

Query: 380 VIGGLRHS-NIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRL--K 436
           V+   +    ++++        E+ L+ +Y   G + S             +  + +   
Sbjct: 81  VLELAKSCPRVINLHEVYENTSEIILILEYAAGGEIFS---------LCLPELAEMVSEN 131

Query: 437 LASDSAK----GLAFLHGYNKAH--------LFHGHLSSSNI-VVDQLGNACISDIG--V 481
                 K    G+ +LH  N  H        L        +I +VD  G +        +
Sbjct: 132 DVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVD-FGMSRKIGHACEL 190

Query: 482 HQLFHTPFFINDAYNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
            ++  TP ++     APE L +   +  +        D+++ G++   +LT 
Sbjct: 191 REIMGTPEYL-----APEILNY---DPIT-----TATDMWNIGIIAYMLLTH 229

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 44.1 bits (105), Expect = 8e-05
 Identities = 37/215 (17%), Positives = 76/215 (35%), Gaps = 47/215 (21%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKRE-VDEWLRVIGGLRHSNIVSIRAYC 396
           E LG+G  G  ++ V        + K ++ +   +  V + + ++   RH NI+ +    
Sbjct: 11  EDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESF 70

Query: 397 NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRL--KLASDSAK----GLAFLHG 450
              +EL ++++++    +   +                L  +            L FLH 
Sbjct: 71  ESMEELVMIFEFISGLDIFERI----------NTSAFELNEREIVSYVHQVCEALQFLHS 120

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNAC--ISDIG----------VHQLFHTPFFINDAYNAP 498
           +N  H     +   NI+     ++   I + G             LF  P +      AP
Sbjct: 121 HNIGHF---DIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYY-----AP 172

Query: 499 E-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
           E      ++  S        D++S G ++  +L+G
Sbjct: 173 EVH---QHDVVS-----TATDMWSLGTLVYVLLSG 199

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 38/256 (14%), Positives = 77/256 (30%), Gaps = 75/256 (29%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKK-----------REVDEWLRVIGGLRH 386
             +G+G  G     +      +  +K + + K +            EV     ++  L H
Sbjct: 32  GAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVR----LMKKLHH 87

Query: 387 SNIVSIRAYCNGKDELFLVYDYLPHGSL-------------HSLLHGSRGPGRMPVDWNK 433
            NI  +      +  + LV +    G L                +   +       + N+
Sbjct: 88  PNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNE 147

Query: 434 RLKLASDSAKGLAFLHGYNK---AHLFH------GHLSSSNIV------------VDQLG 472
                S      +      +   +++         +L +  I              ++  
Sbjct: 148 EAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQGICHRDIKPENFLFSTNKSF 207

Query: 473 NACISDIGVHQLFH---------------TPFFINDAYNAPELKFNNNNNYSQRKFWQRC 517
              + D G+ + F+               TP+F+     APE+    N +Y       +C
Sbjct: 208 EIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFV-----APEVLNTTNESYG-----PKC 257

Query: 518 DVYSFGVVLLEILTGK 533
           D +S GV+L  +L G 
Sbjct: 258 DAWSAGVLLHLLLMGA 273

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 49/214 (22%), Positives = 84/214 (39%), Gaps = 42/214 (19%)

Query: 340 LLGKGCVGATYKVVL----DGGDVVVVKRIRER--KKKREVDEWL---RVIGGLRHSNIV 390
           +LGKG  G   +V        G +   K++ ++  KK++     L   +++  +    +V
Sbjct: 191 VLGKGGFG---EVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVV 247

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKL-ASDSAKGLAFLH 449
           S+      KD L LV   +  G L   ++   G    P     R    A++   GL  LH
Sbjct: 248 SLAYAYETKDALCLVLTLMNGGDLKFHIY-HMGQAGFPEA---RAVFYAAEICCGLEDLH 303

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIG----------VHQLFHTPFFINDAYNAPE 499
                 + +  L   NI++D  G+  ISD+G          +     T       Y APE
Sbjct: 304 RER---IVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTV-----GYMAPE 355

Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           +  N    +S        D ++ G +L E++ G+
Sbjct: 356 VVKNERYTFS-------PDWWALGCLLYEMIAGQ 382

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERK-KKREVDEWLR---VIGGLRHSNIVSIR 393
           E LGKG      + V    G     K I  +K   R+  +  R   +   L+H NIV + 
Sbjct: 12  EELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLH 71

Query: 394 AYCNGKDELFLVYDYLPHGSL 414
                +   +LV+D +  G L
Sbjct: 72  DSIQEESFHYLVFDLVTGGEL 92

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 48/225 (21%), Positives = 85/225 (37%), Gaps = 49/225 (21%)

Query: 332 DLLKSSAELLGKGCVGATYKVVL----DGGDVVVVKRIRER--KKKREVDEWL---RVIG 382
              +    +LG+G  G   +V        G +   K++ ++  KK++     +   +++ 
Sbjct: 188 LDFR----VLGRGGFG---EVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILA 240

Query: 383 GLRHSNIVSIRAYC-NGKDELFLVYDYLPHGSLHS-LLHGSRGPGRMPVDWNKRLKL-AS 439
            +    IVS+ AY    K +L LV   +  G +   + +              R     +
Sbjct: 241 KVHSRFIVSL-AYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEP---RAIFYTA 296

Query: 440 DSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIG--VHQLFH---------TP 488
               GL  LH  N   + +  L   N+++D  GN  ISD+G  V              TP
Sbjct: 297 QIVSGLEHLHQRN---IIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTP 353

Query: 489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
            F+     APEL      ++S        D ++ GV L E++  +
Sbjct: 354 GFM-----APELLLGEEYDFS-------VDYFALGVTLYEMIAAR 386

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 40/243 (16%), Positives = 83/243 (34%), Gaps = 59/243 (24%)

Query: 329 NVGDLLKSS----AELLGKGCVGATYKVVL----DGGDVVVVKRIRERKK-----KREVD 375
             G+  K +       LG G       V L         V +K +R  K      + E+ 
Sbjct: 11  FKGEPYKDARYILVRKLGWGHFS---TVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIK 67

Query: 376 --EWLRVIGGLRHS-----NIVSIR---AYCNGKDE-LFLVYDYLPHGSLHSLLHGSRGP 424
             + +      +       +I+ +     +       + +V++ L   +L +L+      
Sbjct: 68  LLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHR 126

Query: 425 GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ-------------- 470
           G +P+ + K  +++     GL ++H   +  + H  +   N++++               
Sbjct: 127 G-IPLIYVK--QISKQLLLGLDYMH--RRCGIIHTDIKPENVLMEIVDSPENLIQIKIAD 181

Query: 471 LGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEIL 530
           LGNAC  D        T       Y +PE+                 D++S   ++ E++
Sbjct: 182 LGNACWYDEHYTNSIQTRE-----YRSPEVLLGAPWGCG-------ADIWSTACLIFELI 229

Query: 531 TGK 533
           TG 
Sbjct: 230 TGD 232

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 36/210 (17%)

Query: 341 LGKGCVGATYKVV-LDGGDVVVVKRIRE--RKK---KREVDEWLRVIGGLRHSNIVSIR- 393
           +G G  G             V +K++    + +   KR   E L ++  + H NI+S+  
Sbjct: 70  IGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRE-LVLMKCVNHKNIISLLN 128

Query: 394 -----AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFL 448
                       +++LV + +   +L  ++       +M +D  +   L      G+  L
Sbjct: 129 VFTPQKTLEEFQDVYLVMELMDA-NLCQVI-------QMELDHERMSYLLYQMLCGIKHL 180

Query: 449 HGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA-----YNAPELKFN 503
           H    A + H  L  SNIVV       I D G+ +   T F +        Y APE+   
Sbjct: 181 HS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILG 237

Query: 504 NNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
               Y +       D++S G ++ E++  K
Sbjct: 238 MG--YKEN-----VDIWSVGCIMGEMVRHK 260

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR----VIGGLRHSNIVSIR 393
            +LGKG  G   K           VK I +   K +    +     ++  L H NI+ + 
Sbjct: 28  CMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLF 87

Query: 394 AYCNGKDELFLVYDYLPHGSL 414
                    ++V +    G L
Sbjct: 88  EILEDSSSFYIVGELYTGGEL 108

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEW--LRVIGGLRHSNIVSIRAY 395
           E+LG G     + V     G +  +K I++    R+      + V+  ++H NIV++   
Sbjct: 15  EVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDI 74

Query: 396 CNGKDELFLVYDYLPHGSL 414
                  +LV   +  G L
Sbjct: 75  YESTTHYYLVMQLVSGGEL 93

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERK-KKREVDEWLR---VIGGLRHSNIVSIR 393
           E LGKG      + V    G     K I  +K   R+  +  R   +   L+H NIV + 
Sbjct: 35  EELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLH 94

Query: 394 AYCNGKDELFLVYDYLPHGSL 414
                +   +LV+D +  G L
Sbjct: 95  DSIQEESFHYLVFDLVTGGEL 115

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 38/216 (17%), Positives = 82/216 (37%), Gaps = 54/216 (25%)

Query: 341 LGKGCVGATYKVV-LDGGDVVVVKRIR---ERKKKREVDEWLRVIGGLRHSNIVS----I 392
           LG+G     ++ + +   + VVVK ++   ++K KRE+ + L  + G    NI++    +
Sbjct: 44  LGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREI-KILENLRG--GPNIITLADIV 100

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSA---------K 443
           +   +      LV++++                    D+ +  +  +D           K
Sbjct: 101 KDPVSRTP--ALVFEHV-----------------NNTDFKQLYQTLTDYDIRFYMYEILK 141

Query: 444 GLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIGVHQLFHTPFFINDA-----YNA 497
            L + H      + H  +   N+++D +     + D G+ + +H     N       +  
Sbjct: 142 ALDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKG 198

Query: 498 PELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
           PEL  +    Y         D++S G +L  ++  K
Sbjct: 199 PELLVDYQM-YDYS-----LDMWSLGCMLASMIFRK 228

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 26/140 (18%)

Query: 84  AEVL-SRLTQLRLLSLKNNLLSSSNLN-----LSSWPHLKHLYLSHNRFTGTFPSGVSSL 137
            ++L     Q+  L L NN L+++ +      L+    + HL L H         G+  L
Sbjct: 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG---DEGLELL 203

Query: 138 -------RHLRRVDLSHNA--YEGEIPMTE-LTRLPNLLTLRLEDNRFTGT-------LY 180
                  R L+ +++++N       + +       P+L  L L  N  +         L 
Sbjct: 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLG 263

Query: 181 SVNSSSRSILDFNVSNNQLS 200
                   ++        +S
Sbjct: 264 GAAEGGARVVVSLTEGTAVS 283

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR----VIGGLRHSNIVSIR 393
           E LGKG      + V +  G       I  +K      + L     +   L+H NIV + 
Sbjct: 17  EELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLH 76

Query: 394 AYCNGKDELFLVYDYLPHGSL 414
              + +   +L++D +  G L
Sbjct: 77  DSISEEGHHYLIFDLVTGGEL 97

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 43/301 (14%), Positives = 80/301 (26%), Gaps = 120/301 (39%)

Query: 349 TYKVVLDGGDVVVVKRIRERKKK-REVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD 407
             +  L   + V  K    R +   ++ + L     LR +  V                 
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL---ELRPAKNV----------------- 153

Query: 408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLK--LASDSAKGLAFLHGYNKAHLFH------G 459
                    L+ G  G G          K  +A D           +    F        
Sbjct: 154 ---------LIDGVLGSG----------KTWVALDVCLSYKVQCKMD----FKIFWLNLK 190

Query: 460 HLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDV 519
           + +S   V++ L          +Q+       +D  +  +L+ ++     +R    +   
Sbjct: 191 NCNSPETVLEMLQKLL------YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK--- 241

Query: 520 YSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF----------------- 562
             +   LL +L             V        +  AW  F+                  
Sbjct: 242 -PYENCLL-VL-------LN----V-Q------NAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 563 ------ELIMDKEM----EEEMRALLQVALLCLAPLPKDRPN---------MSIVHRMIE 603
                  + +D        +E+++LL   L  L   P+D P          +SI+   I 
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLL---LKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 604 D 604
           D
Sbjct: 339 D 339

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 49/227 (21%), Positives = 77/227 (33%), Gaps = 61/227 (26%)

Query: 334 LKSSAELLGKGCVGATYKVV-LDGGDVVVVKRIRERKK---KREVDEWLRVIGGLRHSNI 389
           L    + LG+G      K V         VK I +R +   ++E+   L++  G  H NI
Sbjct: 12  LDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKEI-TALKLCEG--HPNI 68

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRL--------KLASDS 441
           V +    + +   FLV + L  G L                   R+          AS  
Sbjct: 69  VKLHEVFHDQLHTFLVMELLNGGELFE-----------------RIKKKKHFSETEASYI 111

Query: 442 AK----GLAFLHGYNKAH--------LFHGHLSSSNIVVDQLGNACISDIGVHQLFH--- 486
            +     ++ +H     H        LF     +  I +   G A +       L     
Sbjct: 112 MRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCF 171

Query: 487 TPFFINDAYNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG 532
           T  +      APE L     N Y      + CD++S GV+L  +L+G
Sbjct: 172 TLHYA-----APELLN---QNGYD-----ESCDLWSLGVILYTMLSG 205

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 41/220 (18%)

Query: 332 DLLKSSAELLGKGCVGATYKVVL----DGGDVVVVKRIRERK--KKREVDEWL---RVIG 382
              K    +LG+G       VVL           +K + +R   K+ +V        V+ 
Sbjct: 33  KFGK----ILGEGSFS---TVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMS 85

Query: 383 GLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKL-ASDS 441
            L H   V +       ++L+    Y  +G L   +   R  G          +   ++ 
Sbjct: 86  RLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI---RKIGSFDET---CTRFYTAEI 139

Query: 442 AKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA------- 494
              L +LHG     + H  L   NI++++  +  I+D G  ++         A       
Sbjct: 140 VSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTA 196

Query: 495 -YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
            Y +PEL    +   S        D+++ G ++ +++ G 
Sbjct: 197 QYVSPELLTEKSACKS-------SDLWALGCIIYQLVAGL 229

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 49/227 (21%), Positives = 88/227 (38%), Gaps = 48/227 (21%)

Query: 329 NVGDLLKSSAELLGKGCVGATYKVV-LDGGDVVVVKRIRERKK------KREVDEWLRVI 381
              D+ +   ++LG+G        + L       VK I ++         REV+   +  
Sbjct: 9   RFEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQ 68

Query: 382 GGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKR--LKLAS 439
           G   H N++ +  +   +D  +LV++ +  GS+ S +H  R        +N+     +  
Sbjct: 69  G---HRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIH-KRRH------FNELEASVVVQ 118

Query: 440 DSAKGLAFLHGYNKAH--------LFHGHLSSSNI-VVD-------QLGNACISDIGVHQ 483
           D A  L FLH    AH        L       S + + D       +L   C S I   +
Sbjct: 119 DVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDC-SPISTPE 177

Query: 484 LFH---TPFFINDAYNAPE-LKFNNNNNYSQRKFWQRCDVYSFGVVL 526
           L     +  ++     APE ++     +     + +RCD++S GV+L
Sbjct: 178 LLTPCGSAEYM-----APEVVE---AFSEEASIYDKRCDLWSLGVIL 216

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 13/109 (11%)

Query: 72  KLVLEDLDLTG-PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSW-----PHLKHLYLSHNR 125
           +L LE   L   P  V  +LTQL  LSL  N + S    L          L  LYL  N+
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS----LPDGVFDKLTKLTILYLHENK 87

Query: 126 FTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDN 173
              + P+GV   L  L+ + L  N  +  +P     RL +L  + L  N
Sbjct: 88  LQ-SLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 134

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 14/116 (12%)

Query: 65  PSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSS------SNLNLSSWPHLKH 118
           P     + L   +L       +  RL  L  L LK N L+          +     H++ 
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-----HIQE 82

Query: 119 LYLSHNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDN 173
           L L  N+      + +   L  L+ ++L  N     +       L +L +L L  N
Sbjct: 83  LQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 44/227 (19%), Positives = 74/227 (32%), Gaps = 55/227 (24%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKK--------------KREVDEWLRVIGGL 384
             +  G  GA    V   G  V +KR+                   KR + E +R++   
Sbjct: 28  RFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLRE-IRLLNHF 86

Query: 385 RHSNIVSIR-----AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLAS 439
            H NI+ +R            +L+LV + +    L  ++H  R              ++ 
Sbjct: 87  HHPNILGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIV------------ISP 133

Query: 440 DSA--------KGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFI 491
                       GL  LH    A + H  L   NI++    +  I D  + +        
Sbjct: 134 QHIQYFMYHILLGLHVLHE---AGVVHRDLHPGNILLADNNDITICDFNLAREDTADANK 190

Query: 492 NDA-----YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
                   Y APEL       ++     +  D++S G V+ E+   K
Sbjct: 191 THYVTHRWYRAPELVM-QFKGFT-----KLVDMWSAGCVMAEMFNRK 231

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 26/120 (21%)

Query: 424 PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ 483
             +  +     +  +   AKG+ FL         H  L++ NI++ +     I D G+ +
Sbjct: 185 LYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILLSEKNVVKICDFGLAR 241

Query: 484 LFHTPFFINDAYN------------APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT 531
             +     +  Y             APE  F+         +  + DV+SFGV+L EI +
Sbjct: 242 DIYK----DPDYVRKGDARLPLKWMAPETIFDR-------VYTIQSDVWSFGVLLWEIFS 290

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 46/213 (21%), Positives = 86/213 (40%), Gaps = 35/213 (16%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKK-----KREVD--EWLRVIGGLRHSNIV 390
            L+GKG  G   K       + V +K I+ +K      + EV   E +          IV
Sbjct: 60  SLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIV 119

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
            ++ +   ++ L LV++ L   +L+ LL  +   G + ++  +  K A      L FL  
Sbjct: 120 HLKRHFMFRNHLCLVFEML-SYNLYDLLRNTNFRG-VSLNLTR--KFAQQMCTALLFLAT 175

Query: 451 YNKAHLFHGHLSSSNIVVDQ----------LGNACISDIGVHQLFHTPFFINDAYNAPEL 500
             +  + H  L   NI++             G++C     ++Q   + F     Y +PE+
Sbjct: 176 -PELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIYQYIQSRF-----YRSPEV 229

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
                 + +        D++S G +L+E+ TG+
Sbjct: 230 LLGMPYDLA-------IDMWSLGCILVEMHTGE 255

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	640
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.98
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.88
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.87
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.85
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.84
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.75
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.75
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.72
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.72
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.71
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.69
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.69
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.68
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.67
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.67
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.66
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.65
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.65
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.65
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.65
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.64
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.64
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.64
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.64
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.63
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.63
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.61
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.61
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.61
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.6
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.6
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.59
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.59
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.59
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.59
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.59
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.57
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.55
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.55
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.55
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.54
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.54
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.54
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.53
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.53
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.53
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.53
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.53
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.52
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.52
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.51
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.51
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.51
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.51
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.51
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.51
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.5
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.5
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.5
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.5
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.49
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.48
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.48
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.47
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.47
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.47
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.46
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.46
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.46
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.45
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.45
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.45
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.44
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.44
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.44
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.44
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.44
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.44
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.43
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.43
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.42
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.42
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.42
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.4
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.38
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.37
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.37
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.37
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.36
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.35
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.32
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.31
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.3
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.25
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.21
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.2
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.13
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.1
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.1
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.99
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.94
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.86
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.83
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.83
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.75
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.57
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.53
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.51
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.43
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.4
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.39
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.35
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.25
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.19
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.19
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.08
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.04
3ats_A	357	Putative uncharacterized protein; hypothetical pro	98.02
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.96
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.93
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.92
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.83
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.79
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.79
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.57
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.53
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.31
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	97.18
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.09
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	97.06
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	97.06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.0
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.87
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.77
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.71
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	96.69
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	96.69
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.55
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.51
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.45
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.26
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	96.25
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	96.07
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	96.04
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	96.03
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	95.72
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.67
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	95.37
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.29
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.24
3mes_A	424	Choline kinase; malaria, structural genomics, stru	91.31
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	91.24
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	83.95
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	83.42
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	81.16

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=3.8e-53  Score=432.12  Aligned_cols=248  Identities=24%  Similarity=0.388  Sum_probs=198.2

Q ss_pred             hccccccCcceEEEEEeC------CCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVLD------GGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~------~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .+.||+|+||+||+|++.      ++..||||+++..  ...++|.+|++++++++|||||+++|+|.+++..|||||||
T Consensus        18 ~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~   97 (299)
T 4asz_A           18 KRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYM   97 (299)
T ss_dssp             EEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred             eeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEcC
Confidence            568999999999999864      3678999999765  33567999999999999999999999999999999999999


Q ss_pred             CCCCHHHhhccCC--------CCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCc
Q 006559          410 PHGSLHSLLHGSR--------GPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV  481 (640)
Q Consensus       410 ~~gsL~~~l~~~~--------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl  481 (640)
                      ++|+|.++|+...        ......++|.++++|+.|||+||+|||+   .+||||||||+||||++++.+||+|||+
T Consensus        98 ~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDlKp~NILl~~~~~~Ki~DFGl  174 (299)
T 4asz_A           98 KHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKIGDFGM  174 (299)
T ss_dssp             TTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCSC
T ss_pred             CCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCccCHhhEEECCCCcEEECCccc
Confidence            9999999997542        1223469999999999999999999995   4599999999999999999999999999


Q ss_pred             ccccCC--------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhc
Q 006559          482 HQLFHT--------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQ  552 (640)
Q Consensus       482 ~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~  552 (640)
                      ++....        ...+|..|||||++       ....|+.|+|||||||++|||+| |+.||.+...  .+.+.....
T Consensus       175 a~~~~~~~~~~~~~~~~gt~~ymAPE~~-------~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~--~~~~~~i~~  245 (299)
T 4asz_A          175 SRDVYSTDYYRVGGHTMLPIRWMPPESI-------MYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN--NEVIECITQ  245 (299)
T ss_dssp             HHHHTGGGCEEETTTEEECGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH--HHHHHHHHH
T ss_pred             ceecCCCCceeecCceecChhhcCHHHH-------cCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH--HHHHHHHHc
Confidence            986532        12457889999964       45678899999999999999999 8999975332  222222211


Q ss_pred             ccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          553 DESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       553 ~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ...        ...+.   .+..++.+++.+||+.||++||||.+|++.|+++...
T Consensus       246 ~~~--------~~~p~---~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~  290 (299)
T 4asz_A          246 GRV--------LQRPR---TCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA  290 (299)
T ss_dssp             TCC--------CCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCC--------CCCCc---cchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence            110        01111   2234577788899999999999999999999998753

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=1.2e-52  Score=434.31  Aligned_cols=248  Identities=25%  Similarity=0.374  Sum_probs=196.0

Q ss_pred             hccccccCcceEEEEEeC------CCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVLD------GGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~------~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .++||+|+||+||+|++.      ++..||||+++..  ...++|.+|++++++++|||||+++|+|.+.+..|||||||
T Consensus        46 ~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~  125 (329)
T 4aoj_A           46 KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYM  125 (329)
T ss_dssp             EEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred             EEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcC
Confidence            568999999999999875      3678999999865  33567999999999999999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCC----------CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccC
Q 006559          410 PHGSLHSLLHGSRGP----------GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDI  479 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~Df  479 (640)
                      ++|+|.++++.....          ...+++|.++++|+.|||+||+|||+   .+||||||||+||||++++.+||+||
T Consensus       126 ~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLKp~NILl~~~~~~Ki~DF  202 (329)
T 4aoj_A          126 RHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG---LHFVHRDLATRNCLVGQGLVVKIGDF  202 (329)
T ss_dssp             TTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTEEEECCC
T ss_pred             CCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhc---CCeecccccHhhEEECCCCcEEEccc
Confidence            999999999764321          12369999999999999999999995   45999999999999999999999999


Q ss_pred             CcccccCC--------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHh
Q 006559          480 GVHQLFHT--------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMM  550 (640)
Q Consensus       480 Gl~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~  550 (640)
                      |+++....        ...+|..|||||++       ....++.++|||||||+||||+| |+.||.+...  .+.+...
T Consensus       203 Gla~~~~~~~~~~~~~~~~gt~~ymAPE~~-------~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~--~~~~~~i  273 (329)
T 4aoj_A          203 GMSRDIYSTDYYRVGGRTMLPIRWMPPESI-------LYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN--TEAIDCI  273 (329)
T ss_dssp             C----------------CCCCGGGCCHHHH-------TTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH--HHHHHHH
T ss_pred             ccceeccCCCcceecCcccccccccChhhh-------cCCCCCccccccchHHHHHHHHcCCCCCCCCCCH--HHHHHHH
Confidence            99986532        23468899999964       45678899999999999999999 8999975322  2222222


Q ss_pred             hcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          551 GQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       551 ~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      .....        +..+.   .+..++.+++.+||+.||++||||.||++.|+.+...
T Consensus       274 ~~g~~--------~~~p~---~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~  320 (329)
T 4aoj_A          274 TQGRE--------LERPR---ACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA  320 (329)
T ss_dssp             HHTCC--------CCCCT---TCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             HcCCC--------CCCcc---cccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence            11110        11111   2234567788899999999999999999999998754

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=6.1e-53  Score=432.48  Aligned_cols=245  Identities=23%  Similarity=0.345  Sum_probs=197.1

Q ss_pred             hccccccCcceEEEEEeC------CCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVLD------GGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~------~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      .+.||+|+||+||+|++.      +++.||||+++..   ...++|.+|+.++++++|||||+++|+|.+.+..+|||||
T Consensus        31 ~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV~Ey  110 (308)
T 4gt4_A           31 MEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSY  110 (308)
T ss_dssp             EEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             eeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEEEEEc
Confidence            567999999999999973      4578999999755   3357899999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhccCCCC-----------CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEc
Q 006559          409 LPHGSLHSLLHGSRGP-----------GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACIS  477 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~  477 (640)
                      |++|+|.++|+.....           ....++|..+++|+.|||+||+|||+.   +||||||||+||||++++.+||+
T Consensus       111 ~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~~~Ki~  187 (308)
T 4gt4_A          111 CSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKLNVKIS  187 (308)
T ss_dssp             CSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEEC
T ss_pred             CCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEECCCCCEEEC
Confidence            9999999999754311           123589999999999999999999954   59999999999999999999999


Q ss_pred             cCCcccccCC--------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHH
Q 006559          478 DIGVHQLFHT--------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQ  548 (640)
Q Consensus       478 DfGl~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~  548 (640)
                      |||+++....        ...+|..|||||++       ....|+.++|||||||+||||+| |+.||.+...  .+.++
T Consensus       188 DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l-------~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~--~~~~~  258 (308)
T 4gt4_A          188 DLGLFREVYAADYYKLLGNSLLPIRWMAPEAI-------MYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN--QDVVE  258 (308)
T ss_dssp             CSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH--HHHHH
T ss_pred             CcccceeccCCCceeEecccccCCcccCHHHH-------hCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCH--HHHHH
Confidence            9999986532        23467899999964       45678899999999999999999 8999975332  22222


Q ss_pred             HhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          549 MMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       549 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                      .+.....        ...+.   ++..++.+++.+||+.||++||||.||++.|+.+
T Consensus       259 ~i~~~~~--------~~~p~---~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~  304 (308)
T 4gt4_A          259 MIRNRQV--------LPCPD---DCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW  304 (308)
T ss_dssp             HHHTTCC--------CCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred             HHHcCCC--------CCCcc---cchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence            2221110        01111   2334577888999999999999999999999865

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-52  Score=427.00  Aligned_cols=248  Identities=23%  Similarity=0.344  Sum_probs=194.3

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||+||+|++++  .||||.++..    ...+.|.+|++++++++|||||+++|+|.+ +.+|||||||++|+
T Consensus        41 ~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy~~gGs  117 (307)
T 3omv_A           41 STRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQWCEGSS  117 (307)
T ss_dssp             EEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEECCSSCB
T ss_pred             eeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEEcCCCCC
Confidence            5689999999999999764  5899998743    234568899999999999999999999864 57899999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------  487 (640)
                      |.++|+....    +++|..++.|+.|||+||+|||+   .+||||||||+||||++++.+||+|||+++....      
T Consensus       118 L~~~l~~~~~----~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~  190 (307)
T 3omv_A          118 LYKHLHVQET----KFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQ  190 (307)
T ss_dssp             HHHHHHTSCC----CCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCCSSCBC---------
T ss_pred             HHHHHhhcCC----CCCHHHHHHHHHHHHHHHHHHHH---CCccCCccCHHHEEECCCCcEEEeeccCceecccCCccee
Confidence            9999976532    58999999999999999999995   4599999999999999999999999999986532      


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHhhcccccccccchhh
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                        ...+|+.|||||++...    ....|+.|+|||||||+||||+||+.||.+.... .....  .....     ..+.+
T Consensus       191 ~~~~~GT~~ymAPE~l~~~----~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~--~~~~~-----~~p~~  259 (307)
T 3omv_A          191 VEQPTGSVLWMAPEVIRMQ----DNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFM--VGRGY-----ASPDL  259 (307)
T ss_dssp             ---CCCCTTSCCHHHHHCC----SSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHH--HHTTC-----CCCCS
T ss_pred             ecccccCCCccCHHHhhcc----CCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHH--HhcCC-----CCCCc
Confidence              23579999999976422    2345889999999999999999999999753221 11111  11110     01110


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      .  ....++..++.+++.+||+.||++||||.||++.|+.++..
T Consensus       260 ~--~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~  301 (307)
T 3omv_A          260 S--KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHS  301 (307)
T ss_dssp             T--TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTT
T ss_pred             c--cccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcc
Confidence            0  00112334577788899999999999999999999988743

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=1.5e-52  Score=430.31  Aligned_cols=260  Identities=26%  Similarity=0.337  Sum_probs=197.3

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccccch-HHHHHHHHHHhccCCCcccceeEEEEcCC----eEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERKKK-REVDEWLRVIGGLRHSNIVSIRAYCNGKD----ELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~-~~~~~e~~~l~~l~H~niv~l~~~~~~~~----~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||+||+|+++ |+.||||++...... ..++.|+..+.+++|||||+++|+|..++    .+|||||||++|
T Consensus         8 ~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~g   86 (303)
T 3hmm_A            8 QESIGKGRFGEVWRGKWR-GEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHG   86 (303)
T ss_dssp             EEEEEECSSSEEEEEEET-TEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTC
T ss_pred             EEEEeeCCCeEEEEEEEC-CEEEEEEEECccchhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecCCCCC
Confidence            568999999999999984 789999999765332 22345677778899999999999998653    689999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcC-----CCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY-----NKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-----~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      +|.++++..      +++|..+.+++.|+|+||+|||+.     ..++||||||||+|||||.++.+||+|||+++....
T Consensus        87 sL~~~l~~~------~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~  160 (303)
T 3hmm_A           87 SLFDYLNRY------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDS  160 (303)
T ss_dssp             BHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEET
T ss_pred             cHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccC
Confidence            999999854      489999999999999999999975     245799999999999999999999999999986532


Q ss_pred             ----------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcch-------------H
Q 006559          488 ----------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGI-------------V  544 (640)
Q Consensus       488 ----------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~-------------~  544 (640)
                                ...+|..|||||++.+... .....++.|+|||||||+||||+||+.|+.......             .
T Consensus       161 ~~~~~~~~~~~~~GT~~ymAPE~l~~~~~-~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~  239 (303)
T 3hmm_A          161 ATDTIDIAPNHRVGTKRYMAPEVLDDSIN-MKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVE  239 (303)
T ss_dssp             TTTEESCC-----CCGGGCCHHHHTTCSC-TTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHH
T ss_pred             CCCceeeecccccccccccCHHHhccccc-ccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHH
Confidence                      1357999999998754321 122346789999999999999999988775322111             1


Q ss_pred             HHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 006559          545 KWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGS  610 (640)
Q Consensus       545 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~  610 (640)
                      ...+....     ...++.+.......+....+.+++.+||+.||++||||.||++.|+++..+.+
T Consensus       240 ~~~~~~~~-----~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~~~  300 (303)
T 3hmm_A          240 EMRKVVCE-----QKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEG  300 (303)
T ss_dssp             HHHHHHTT-----SCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC--
T ss_pred             HHHHHHhc-----ccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHHcC
Confidence            11111111     11122221111223456678899999999999999999999999999986643

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=6.8e-50  Score=412.16  Aligned_cols=241  Identities=18%  Similarity=0.217  Sum_probs=193.0

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHH
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~  416 (640)
                      .+.||+|+||+||+|+. .+|+.||||+++....   ..+|++++++++|||||++++++.+.+.+|||||||++|+|.+
T Consensus        63 ~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~---~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~  139 (336)
T 4g3f_A           63 QPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF---RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQ  139 (336)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC---CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHH
T ss_pred             CcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh---HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHH
Confidence            46799999999999996 4689999999975432   2468999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC-CeEEccCCcccccCC--------
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG-NACISDIGVHQLFHT--------  487 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~-~~kl~DfGl~~~~~~--------  487 (640)
                      +++...     ++++.....++.||+.||+|||+   .+||||||||+||||+.++ .+||+|||+++.+..        
T Consensus       140 ~l~~~~-----~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~  211 (336)
T 4g3f_A          140 LIKQMG-----CLPEDRALYYLGQALEGLEYLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLL  211 (336)
T ss_dssp             HHHHHS-----SCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCCGGGEEECTTSCCEEECCCTTCEEC----------
T ss_pred             HHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCccccee
Confidence            997643     58999999999999999999995   5599999999999999988 699999999987532        


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHhhcccccccccchh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~  563 (640)
                         ..++|+.|||||++.       ...|+.++|||||||++|||+||+.||.+.... +...+..  ......      
T Consensus       212 ~~~~~~GT~~YmAPE~~~-------~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~--~~~~~~------  276 (336)
T 4g3f_A          212 TGDYIPGTETHMAPEVVM-------GKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIAS--EPPPIR------  276 (336)
T ss_dssp             --CCCCCCGGGCCHHHHT-------TCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHH--SCCGGG------
T ss_pred             cCCccccCccccCHHHHC-------CCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHc--CCCCch------
Confidence               135799999999753       356788999999999999999999999753322 2211111  110000      


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                       ..++..   ...+.+++.+||+.||++|||+.|+++.|......
T Consensus       277 -~~~~~~---s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~  317 (336)
T 4g3f_A          277 -EIPPSC---APLTAQAIQEGLRKEPVHRASAMELRRKVGKALQE  317 (336)
T ss_dssp             -GSCTTS---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             -hcCccC---CHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhh
Confidence             011222   23456677889999999999999999998886643

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=3e-49  Score=400.49  Aligned_cols=238  Identities=21%  Similarity=0.329  Sum_probs=187.5

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEc----CCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNG----KDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~----~~~~~lV~Ey  408 (640)
                      .++||+|+||+||+|+.. ++..||||++....    ..+.+.+|++++++++|||||+++++|..    ++.+||||||
T Consensus        31 ~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmEy  110 (290)
T 3fpq_A           31 DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTEL  110 (290)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEEC
T ss_pred             eeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEeC
Confidence            457999999999999964 57889999997542    24568899999999999999999999865    3468999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC-CCCCeEEccCCcccccCC
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIGVHQLFHT  487 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~-~~~~~kl~DfGl~~~~~~  487 (640)
                      |++|+|.++++...     ++++..+..++.||+.||+|||+.+ ++||||||||+||||+ .++.+||+|||+|+....
T Consensus       111 ~~gg~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~ylH~~~-~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~  184 (290)
T 3fpq_A          111 MTSGTLKTYLKRFK-----VMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA  184 (290)
T ss_dssp             CCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred             CCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHCC-CCEEecccChhheeEECCCCCEEEEeCcCCEeCCC
Confidence            99999999997643     5899999999999999999999643 4599999999999998 479999999999986543


Q ss_pred             ----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchh
Q 006559          488 ----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       488 ----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                          ..++|+.|||||++.        ..|+.++|||||||++|||+||+.||.+... .....+.........     .
T Consensus       185 ~~~~~~~GTp~YmAPE~~~--------~~y~~~~DiwSlGvilyelltg~~Pf~~~~~-~~~~~~~i~~~~~~~-----~  250 (290)
T 3fpq_A          185 SFAKAVIGTPEFMAPEMYE--------EKYDESVDVYAFGMCMLEMATSEYPYSECQN-AAQIYRRVTSGVKPA-----S  250 (290)
T ss_dssp             TSBEESCSSCCCCCGGGGG--------TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSS-HHHHHHHHTTTCCCG-----G
T ss_pred             CccCCcccCccccCHHHcC--------CCCCcHHHHHHHHHHHHHHHHCCCCCCCCCc-HHHHHHHHHcCCCCC-----C
Confidence                346799999999752        3578999999999999999999999975322 222222222111000     0


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                        .+..   ...++.+++.+||+.||++|||+.|+++
T Consensus       251 --~~~~---~~~~~~~li~~~L~~dP~~R~s~~e~l~  282 (290)
T 3fpq_A          251 --FDKV---AIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             --GGGC---CCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             --CCcc---CCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence              0111   1124667788899999999999999864

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=2.5e-49  Score=409.12  Aligned_cols=236  Identities=19%  Similarity=0.299  Sum_probs=190.9

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      .+.||+|+||+||+|+.. +|+.||||++...  ...+.+.+|++++++++|||||+++++|.+++.+|||||||++|+|
T Consensus        79 ~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L  158 (346)
T 4fih_A           79 FIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGAL  158 (346)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTTEEH
T ss_pred             eEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcH
Confidence            457999999999999964 6899999999654  3445688999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------C
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------P  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------~  488 (640)
                      .+++...      .+++.....++.||+.||+|||+.   +||||||||+||||+.++.+||+|||+++.+..      .
T Consensus       159 ~~~l~~~------~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~  229 (346)
T 4fih_A          159 TDIVTHT------RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKS  229 (346)
T ss_dssp             HHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCC
T ss_pred             HHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCceecCCCCCcccc
Confidence            9999753      488999999999999999999954   599999999999999999999999999987642      3


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      .++|+.|||||++       ....|+.++||||+||++|||+||+.||.+...  .+..+......      .+.+....
T Consensus       230 ~~GTp~YmAPEvl-------~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--~~~~~~i~~~~------~~~~~~~~  294 (346)
T 4fih_A          230 LVGTPYWMAPELI-------SRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRDNL------PPRLKNLH  294 (346)
T ss_dssp             CCSCGGGCCHHHH-------TTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHSS------CCCCSCGG
T ss_pred             cccCcCcCCHHHH-------CCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHHHHHHcCC------CCCCCccc
Confidence            5679999999975       345678899999999999999999999975422  12122211110      00111111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..+   .++.+++.+||+.||++|||+.|+++
T Consensus       295 ~~s---~~~~dli~~~L~~dP~~R~ta~e~l~  323 (346)
T 4fih_A          295 KVS---PSLKGFLDRLLVRDPAQRATAAELLK  323 (346)
T ss_dssp             GSC---HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             cCC---HHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            122   34566778899999999999998865

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=1.8e-49  Score=410.80  Aligned_cols=238  Identities=21%  Similarity=0.363  Sum_probs=186.7

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ..+.||+|+||+||+|+. .+|+.||||++...    ...+.+.+|++++++++|||||++++++.+.+.+|||||||++
T Consensus        28 ~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy~~g  107 (350)
T 4b9d_A           28 RLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEG  107 (350)
T ss_dssp             EEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred             EeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEeCCCC
Confidence            357899999999999995 56899999999754    2245688999999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++...+.   ..+++.....|+.||+.||+|||+   .+||||||||+||||+.++.+||+|||+++....    
T Consensus       108 g~L~~~i~~~~~---~~~~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~  181 (350)
T 4b9d_A          108 GDLFKRINAQKG---VLFQEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVEL  181 (350)
T ss_dssp             CBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHHH---TTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHHH
T ss_pred             CcHHHHHHHcCC---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHHHEEECCCCCEEEcccccceeecCCccc
Confidence            999999975432   257888999999999999999995   4599999999999999999999999999987653    


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                        ..++|+.|||||++.       ...|+.++||||+||++|||+||+.||.....  .+...........        .
T Consensus       182 ~~~~~GT~~YmAPE~l~-------~~~y~~~~DiwSlGvilyemltG~~PF~~~~~--~~~~~~i~~~~~~--------~  244 (350)
T 4b9d_A          182 ARACIGTPYYLSPEICE-------NKPYNNKSDIWALGCVLYELCTLKHAFEAGSM--KNLVLKIISGSFP--------P  244 (350)
T ss_dssp             HHHHHSCCTTCCHHHHT-------TCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHTCCC--------C
T ss_pred             ccccCCCccccCHHHHC-------CCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHHHHHHcCCCC--------C
Confidence              245799999999753       45678899999999999999999999975432  2222221111100        0


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .....+   .++.+++.+||+.||++|||+.|+++
T Consensus       245 ~~~~~s---~~~~~li~~~L~~dP~~R~s~~e~l~  276 (350)
T 4b9d_A          245 VSLHYS---YDLRSLVSQLFKRNPRDRPSVNSILE  276 (350)
T ss_dssp             CCTTSC---HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCccCC---HHHHHHHHHHccCChhHCcCHHHHhc
Confidence            111122   34566778899999999999999975

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=1.8e-49  Score=413.93  Aligned_cols=250  Identities=21%  Similarity=0.324  Sum_probs=196.2

Q ss_pred             hhccccccCcceEEEEEeCC------CcEEEEEEecccc---chHHHHHHHHHHhccCC-CcccceeEEEEcC-CeEEEE
Q 006559          337 SAELLGKGCVGATYKVVLDG------GDVVVVKRIRERK---KKREVDEWLRVIGGLRH-SNIVSIRAYCNGK-DELFLV  405 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~------~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H-~niv~l~~~~~~~-~~~~lV  405 (640)
                      ..+.||+|+||+||+|++.+      ++.||||.++...   ..+++.+|++++.+++| ||||+++|+|... +.+|||
T Consensus        68 l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~~~~iV  147 (353)
T 4ase_A           68 LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVI  147 (353)
T ss_dssp             EEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEE
T ss_pred             EeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCCEEEEE
Confidence            35789999999999998643      3579999998653   34568899999999976 8999999999764 578999


Q ss_pred             EeccCCCCHHHhhccCCC-----------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCe
Q 006559          406 YDYLPHGSLHSLLHGSRG-----------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNA  474 (640)
Q Consensus       406 ~Ey~~~gsL~~~l~~~~~-----------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~  474 (640)
                      ||||++|+|.++|+....           .....++|..++.++.|||+||+|||+.   +||||||||+|||+++++.+
T Consensus       148 ~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~~v  224 (353)
T 4ase_A          148 VEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVV  224 (353)
T ss_dssp             EECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCE
T ss_pred             EEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---CeecCccCccceeeCCCCCE
Confidence            999999999999975431           1123589999999999999999999954   59999999999999999999


Q ss_pred             EEccCCcccccCC--------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHH
Q 006559          475 CISDIGVHQLFHT--------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVK  545 (640)
Q Consensus       475 kl~DfGl~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~  545 (640)
                      ||+|||+++....        ...+|..|||||++       ....|+.++|||||||+||||+| |+.||.+...... 
T Consensus       225 Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l-------~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~-  296 (353)
T 4ase_A          225 KICDFGLARDIYKDPDYVRKGDARLPLKWMAPETI-------FDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE-  296 (353)
T ss_dssp             EECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH-
T ss_pred             EECcchhhhhcccCCCceeeccccccccccCHHHH-------hcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHH-
Confidence            9999999987532        12457889999964       45678899999999999999999 8999975432211 


Q ss_pred             HHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          546 WVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       546 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ..+.+.....        +..+.   .+..++.+++..||+.||++||||.||++.|+++.+.
T Consensus       297 ~~~~i~~g~~--------~~~p~---~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~  348 (353)
T 4ase_A          297 FCRRLKEGTR--------MRAPD---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  348 (353)
T ss_dssp             HHHHHHHTCC--------CCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCC--------CCCCc---cCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHH
Confidence            1111111100        01111   1233567788899999999999999999999998643

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=4.1e-48  Score=409.75  Aligned_cols=236  Identities=19%  Similarity=0.300  Sum_probs=191.0

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      .+.||+|+||.||+|+. .+|+.||||++...  ...+.+.+|+++|++++|||||+++++|...+.+|||||||++|+|
T Consensus       156 ~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~gG~L  235 (423)
T 4fie_A          156 FIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGAL  235 (423)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEH
T ss_pred             eeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCCCCCcH
Confidence            46799999999999996 46899999999754  3455688999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------C
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------P  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------~  488 (640)
                      .++++..      .+++..+..|+.||+.||+|||+.   +||||||||+||||+.+|.+||+|||+++.+..      .
T Consensus       236 ~~~i~~~------~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~  306 (423)
T 4fie_A          236 TDIVTHT------RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKS  306 (423)
T ss_dssp             HHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCC
T ss_pred             HHHHhcc------CCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccceECCCCCccccc
Confidence            9999754      488999999999999999999954   599999999999999999999999999987642      3


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      .++|+.|||||++       ....|+.++|||||||++|||++|+.||.+...  .+..+......      .+.+....
T Consensus       307 ~~GTp~YmAPEvl-------~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--~~~~~~i~~~~------~~~~~~~~  371 (423)
T 4fie_A          307 LVGTPYWMAPELI-------SRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRDNL------PPRLKNLH  371 (423)
T ss_dssp             CEECTTTCCHHHH-------TTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHSC------CCCCSCTT
T ss_pred             cccCcCcCCHHHH-------CCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHHHHHHcCC------CCCCcccc
Confidence            4679999999975       345678899999999999999999999975432  12122211110      00111111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..+   .++.+++.+||+.||++|||+.|+++
T Consensus       372 ~~s---~~~~dli~~~L~~dP~~R~ta~ell~  400 (423)
T 4fie_A          372 KVS---PSLKGFLDRLLVRDPAQRATAAELLK  400 (423)
T ss_dssp             SSC---HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             cCC---HHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            122   34566778899999999999999865

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=1.7e-48  Score=396.99  Aligned_cols=234  Identities=17%  Similarity=0.247  Sum_probs=191.2

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..++||+|+||+||+|+. .+++.||||++...     ...+.+.+|++++++++|||||++++++.+++..|||||||+
T Consensus        36 i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivmEy~~  115 (311)
T 4aw0_A           36 FGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAK  115 (311)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCT
T ss_pred             EEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCC
Confidence            357899999999999995 56889999999753     234568899999999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                      +|+|.+++....     .+++.....++.||+.||+|||+.   +||||||||+|||++.++.+||+|||+++.+..   
T Consensus       116 gG~L~~~i~~~~-----~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~  187 (311)
T 4aw0_A          116 NGELLKYIRKIG-----SFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK  187 (311)
T ss_dssp             TEEHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTT
T ss_pred             CCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCC
Confidence            999999997643     589999999999999999999954   599999999999999999999999999987631   


Q ss_pred             -----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccch
Q 006559          488 -----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       488 -----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                           ..++|+.|||||++       ....|+.++||||+||++|||+||+.||......  ...+.....         
T Consensus       188 ~~~~~~~~GTp~YmAPEvl-------~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~--~~~~~i~~~---------  249 (311)
T 4aw0_A          188 QARANSFVGTAQYVSPELL-------TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEG--LIFAKIIKL---------  249 (311)
T ss_dssp             CCCBCCCCSCGGGCCHHHH-------HHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHT---------
T ss_pred             cccccCcccCcccCCHHHH-------cCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHcC---------
Confidence                 34689999999975       3456778999999999999999999999754322  111111111         


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVH  599 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~  599 (640)
                      ....+...+.   ++.+++.+||+.||++|||+.|+.
T Consensus       250 ~~~~p~~~s~---~~~dli~~lL~~dp~~R~t~~e~~  283 (311)
T 4aw0_A          250 EYDFPEKFFP---KARDLVEKLLVLDATKRLGCEEME  283 (311)
T ss_dssp             CCCCCTTCCH---HHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred             CCCCCcccCH---HHHHHHHHHccCCHhHCcChHHHc
Confidence            1111122222   356677889999999999999874

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=8.4e-48  Score=386.51  Aligned_cols=234  Identities=18%  Similarity=0.282  Sum_probs=179.8

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||+||+|+. .+|+.||||++...     ...+.+.+|++++++++|||||++++++.+++..|+||||| +
T Consensus        18 ~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~-~   96 (275)
T 3hyh_A           18 VKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYA-G   96 (275)
T ss_dssp             EEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECC-C
T ss_pred             EEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEeCC-C
Confidence            56899999999999995 56899999998654     22456889999999999999999999999999999999999 6


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....     ++++.....++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+++....    
T Consensus        97 g~L~~~l~~~~-----~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~  168 (275)
T 3hyh_A           97 NELFDYIVQRD-----KMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFL  168 (275)
T ss_dssp             EEHHHHHHHSC-----SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSSCC---------
T ss_pred             CCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecCCCeecCCCCcc
Confidence            89999997643     589999999999999999999954   599999999999999999999999999987542    


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                       ..++|+.|+|||++.+.+      .++.++||||+||++|||+||+.||.+...  ....+......         ...
T Consensus       169 ~~~~GT~~Y~APE~~~~~~------y~~~~~DiwSlGvily~lltg~~PF~~~~~--~~~~~~i~~~~---------~~~  231 (275)
T 3hyh_A          169 KTSCGSPNYAAPEVISGKL------YAGPEVDVWSCGVILYVMLCRRLPFDDESI--PVLFKNISNGV---------YTL  231 (275)
T ss_dssp             ------CTTSCHHHHSSSS------CCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTC---------CCC
T ss_pred             CCeeECcccCChhhhcCCC------CCCChhhhHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHcCC---------CCC
Confidence             346799999999864322      235789999999999999999999975432  22222221111         111


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      +...+.   ++.+++.+||+.||++|||+.|+++
T Consensus       232 p~~~s~---~~~~li~~~L~~dP~~R~s~~eil~  262 (275)
T 3hyh_A          232 PKFLSP---GAAGLIKRMLIVNPLNRISIHEIMQ  262 (275)
T ss_dssp             CTTSCH---HHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             CCCCCH---HHHHHHHHHccCChhHCcCHHHHHc
Confidence            112222   3566778899999999999999875

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=6.6e-48  Score=392.61  Aligned_cols=230  Identities=21%  Similarity=0.300  Sum_probs=180.4

Q ss_pred             hhccccccCcceEEEEEeC----CCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          337 SAELLGKGCVGATYKVVLD----GGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~----~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      ..+.||+|+||+||+|+..    .++.||||.++..    .....+.+|++++++++|||||++++++.+++..||||||
T Consensus        28 i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy  107 (304)
T 3ubd_A           28 LLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDF  107 (304)
T ss_dssp             EEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEEEECC
T ss_pred             EEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEEc
Confidence            3578999999999999852    4678999999754    2334678899999999999999999999999999999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC--
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH--  486 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~--  486 (640)
                      |++|+|.+++....     .+++.....++.|++.||+|||+.   +||||||||+|||++.++.+||+|||+++...  
T Consensus       108 ~~gg~L~~~l~~~~-----~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~  179 (304)
T 3ubd_A          108 LRGGDLFTRLSKEV-----MFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDH  179 (304)
T ss_dssp             CTTCEEHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEESSEEEEC----
T ss_pred             CCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecccccceeccCC
Confidence            99999999998653     589999999999999999999954   59999999999999999999999999998642  


Q ss_pred             ----CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccch
Q 006559          487 ----TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       487 ----~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                          ...++|+.|||||++       ....|+.++||||+||++|||+||+.||.+...  .+........         
T Consensus       180 ~~~~~~~~GT~~YmAPE~~-------~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~--~~~~~~i~~~---------  241 (304)
T 3ubd_A          180 EKKAYSFCGTVEYMAPEVV-------NRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDR--KETMTMILKA---------  241 (304)
T ss_dssp             -CCCCSCCCCGGGCCHHHH-------HTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHC---------
T ss_pred             CccccccccCcccCCHHHh-------ccCCCCCCCcccchHHHHHHHHhCCCCCCCcCH--HHHHHHHHcC---------
Confidence                235679999999975       345677899999999999999999999975432  2222221111         


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCH
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNM  595 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~  595 (640)
                      ....+...+.   ++.+++.+||+.||++|||+
T Consensus       242 ~~~~p~~~s~---~~~~li~~~L~~dP~~R~ta  271 (304)
T 3ubd_A          242 KLGMPQFLSP---EAQSLLRMLFKRNPANRLGA  271 (304)
T ss_dssp             CCCCCTTSCH---HHHHHHHHHTCSSGGGSTTC
T ss_pred             CCCCCCcCCH---HHHHHHHHHcccCHHHCCCC
Confidence            1111112222   45667788999999999985

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=1.3e-46  Score=384.52  Aligned_cols=236  Identities=19%  Similarity=0.266  Sum_probs=178.1

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCC------------e
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKD------------E  401 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~------------~  401 (640)
                      .+.||+|+||+||+|+. .+|+.||||+++...   ..+.+.+|++++++++|||||++++++...+            .
T Consensus        10 ~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~~~~~   89 (299)
T 4g31_A           10 IQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVY   89 (299)
T ss_dssp             EEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC----------CEE
T ss_pred             eeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccCCCcE
Confidence            46899999999999996 468899999987542   3456889999999999999999999987543            3


Q ss_pred             EEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCc
Q 006559          402 LFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV  481 (640)
Q Consensus       402 ~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl  481 (640)
                      .|+|||||++|+|.+++.....  ....++...+.++.||+.||+|||+.   +||||||||+|||++.++.+||+|||+
T Consensus        90 l~ivmE~~~gg~L~~~l~~~~~--~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~vKl~DFGl  164 (299)
T 4g31_A           90 LYIQMQLCRKENLKDWMNGRCT--IEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGL  164 (299)
T ss_dssp             EEEEEECCCSCCHHHHHHTCCS--GGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCCC
T ss_pred             EEEEEecCCCCcHHHHHHhcCC--CChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcEEEccCcc
Confidence            7999999999999999986532  12356777889999999999999954   599999999999999999999999999


Q ss_pred             ccccCC------------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcch
Q 006559          482 HQLFHT------------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGI  543 (640)
Q Consensus       482 ~~~~~~------------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~  543 (640)
                      ++....                  ..++|+.|||||++.       ...|+.++|||||||++|||++   ||.... ..
T Consensus       165 a~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~-------~~~y~~~~DiwSlGvilyell~---Pf~~~~-~~  233 (299)
T 4g31_A          165 VTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIH-------GNSYSHKVDIFSLGLILFELLY---PFSTQM-ER  233 (299)
T ss_dssp             C--------------------------CCCTTSCHHHHT-------TCCCCTHHHHHHHHHHHHHHHS---CCSSHH-HH
T ss_pred             ceecCCCccccccccccccccccCCcccCccccCHHHHc-------CCCCCCHHHHHHHHHHHHHHcc---CCCCcc-HH
Confidence            987532                  135799999999753       4567889999999999999997   775321 11


Q ss_pred             HHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          544 VKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       544 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .........           ...++...+....+.+++.+||+.||++|||+.|+++
T Consensus       234 ~~~~~~~~~-----------~~~p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  279 (299)
T 4g31_A          234 VRTLTDVRN-----------LKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIE  279 (299)
T ss_dssp             HHHHHHHHT-----------TCCCHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHhc-----------CCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            111111110           0112222333445667888999999999999999875

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.6e-44  Score=379.44  Aligned_cols=248  Identities=21%  Similarity=0.329  Sum_probs=186.9

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEc------CCeEEEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNG------KDELFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~------~~~~~lV~  406 (640)
                      .+.||+|+||+||+|+. .+|+.||||+++...    ..+.+.+|+++|++++|||||++++++..      .+.+||||
T Consensus        59 ~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~~ivm  138 (398)
T 4b99_A           59 IETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVL  138 (398)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCEEEEE
T ss_pred             EEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCEEEEEE
Confidence            56899999999999996 568999999997542    23557789999999999999999999764      35799999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      |||+ |+|.+++....     ++++..+..++.||+.||+|||+.   +||||||||+|||++.++.+||+|||+++.+.
T Consensus       139 E~~~-g~L~~~i~~~~-----~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~  209 (398)
T 4b99_A          139 DLME-SDLHQIIHSSQ-----PLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFGMARGLC  209 (398)
T ss_dssp             ECCS-EEHHHHHTSSS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBCC-
T ss_pred             eCCC-CCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeecceeeecc
Confidence            9996 78999997643     589999999999999999999954   59999999999999999999999999998652


Q ss_pred             ----------CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHHHH-HHhhccc
Q 006559          487 ----------TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVKWV-QMMGQDE  554 (640)
Q Consensus       487 ----------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~~~-~~~~~~~  554 (640)
                                ...++|+.|+|||++.+      ...++.++||||+||++|||+||+.||.+... +....+ ...+...
T Consensus       210 ~~~~~~~~~~~~~~GT~~Y~APEv~~~------~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~  283 (398)
T 4b99_A          210 TSPAEHQYFMTEYVATRWYRAPELMLS------LHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPS  283 (398)
T ss_dssp             ------CCCCCSSCCCCTTCCHHHHTT------CSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCC
T ss_pred             cCccccccccccceeChHhcCHHHhcC------CCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCC
Confidence                      23567999999997633      23467899999999999999999999975432 121111 1111110


Q ss_pred             -ccccccch--------hhc--cChHH----HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          555 -SAWEVFDF--------ELI--MDKEM----EEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       555 -~~~~~~d~--------~~~--~~~~~----~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       ..+.....        ...  .....    .....++.+++.+||..||++|||+.|+++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~  344 (398)
T 4b99_A          284 PAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR  344 (398)
T ss_dssp             GGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             hHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence             00000000        000  00000    011235677888999999999999999865

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=5.2e-44  Score=375.02  Aligned_cols=187  Identities=18%  Similarity=0.300  Sum_probs=161.1

Q ss_pred             hhccccccCcceEEEEEeC----CCcEEEEEEeccccchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          337 SAELLGKGCVGATYKVVLD----GGDVVVVKRIRERKKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~----~~~~vavK~l~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ..+.||+|+||+||+|+.+    .++.||||++........+.+|+++++.+ +|||||++++++...+..|+|||||++
T Consensus        25 i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~lvmE~~~g  104 (361)
T 4f9c_A           25 IEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEH  104 (361)
T ss_dssp             EEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEEEEEECCCC
T ss_pred             EEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEEEEEeCCCc
Confidence            3568999999999999853    46789999998776667788999999988 699999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC-CCeEEccCCcccccCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL-GNACISDIGVHQLFHT---  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~-~~~kl~DfGl~~~~~~---  487 (640)
                      |+|.+++.        .+++.....++.|++.||+|||+   .+||||||||+|||++.+ +.+||+|||+|+....   
T Consensus       105 ~~L~~~~~--------~l~~~~~~~~~~qll~al~ylH~---~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~  173 (361)
T 4f9c_A          105 ESFLDILN--------SLSFQEVREYMLNLFKALKRIHQ---FGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKI  173 (361)
T ss_dssp             CCHHHHHT--------TCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSC
T ss_pred             ccHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCccc
Confidence            99999984        37888999999999999999995   459999999999999876 7999999999975421   


Q ss_pred             -------------------------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCC
Q 006559          488 -------------------------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAK  536 (640)
Q Consensus       488 -------------------------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~  536 (640)
                                                     ..++|+.|+|||++.+.      ..++.++||||+||++|||+||+.||
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~------~~y~~~~DiWSlG~il~ell~G~~Pf  247 (361)
T 4f9c_A          174 ELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKC------PNQTTAIDMWSAGVIFLSLLSGRYPF  247 (361)
T ss_dssp             GGGGGC--------------------------CCCCGGGCCHHHHTTC------SCCCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred             cccccccccccccccccccccccccccccccccccCccccCHHHHcCC------CCCCCccchhhhHHHHHHHHHCCCCC
Confidence                                           23579999999986432      34678999999999999999999999


Q ss_pred             CCCC
Q 006559          537 GDGE  540 (640)
Q Consensus       537 ~~~~  540 (640)
                      ....
T Consensus       248 ~~~~  251 (361)
T 4f9c_A          248 YKAS  251 (361)
T ss_dssp             SCCS
T ss_pred             CCCC
Confidence            6543

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=9.2e-43  Score=384.94  Aligned_cols=236  Identities=19%  Similarity=0.231  Sum_probs=185.1

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHH---HHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVD---EWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~---~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      .++||+|+||+||+|+.. +|+.||||++...     .....+.   .++.+++.++|||||+++++|.+.+.+||||||
T Consensus       194 ~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~lylVmEy  273 (689)
T 3v5w_A          194 HRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDL  273 (689)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             EEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEEEEEec
Confidence            467999999999999964 6899999999653     1122233   345677888999999999999999999999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-  487 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-  487 (640)
                      |++|+|.++|....     .+++.....|+.||+.||+|||+   .+||||||||+||||+.+|.+||+|||+++.+.. 
T Consensus       274 ~~GGdL~~~l~~~~-----~l~E~~a~~y~~qIl~aL~yLH~---~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~  345 (689)
T 3v5w_A          274 MNGGDLHYHLSQHG-----VFSEADMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK  345 (689)
T ss_dssp             CCSCBHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC
T ss_pred             CCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCchHHeEEeCCCCEEecccceeeecCCC
Confidence            99999999997643     58999999999999999999994   5599999999999999999999999999987643 


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHHHHHHhhcccccccccchh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                         ..++|+.|||||++.      ....|+.++||||+||++|||+||+.||.+... ......+....         ..
T Consensus       346 ~~~t~~GTp~YmAPEvl~------~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~---------~~  410 (689)
T 3v5w_A          346 KPHASVGTHGYMAPEVLQ------KGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLT---------MA  410 (689)
T ss_dssp             CCCSCCSCGGGCCHHHHS------TTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHH---------CC
T ss_pred             CCCCccCCcCccCHHHHh------CCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcC---------CC
Confidence               457899999999753      234577899999999999999999999975322 12111111111         11


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCC-----HHHHH
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPN-----MSIVH  599 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs-----~~~v~  599 (640)
                      ...+...+.   ++.+++..||+.||++|++     +.||.
T Consensus       411 ~~~p~~~S~---~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~  448 (689)
T 3v5w_A          411 VELPDSFSP---ELRSLLEGLLQRDVNRRLGCLGRGAQEVK  448 (689)
T ss_dssp             CCCCTTSCH---HHHHHHHHHTCSCGGGCTTCSSSTHHHHT
T ss_pred             CCCCccCCH---HHHHHHHHHccCCHhHCCCCCCCCHHHHh
Confidence            111222223   3566777899999999998     56664

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=3.5e-42  Score=357.89  Aligned_cols=261  Identities=33%  Similarity=0.554  Sum_probs=214.5

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      .+.||+|+||.||+|+..+++.||||++....   ....+.+|++++++++||||+++++++...+..++||||+++|+|
T Consensus        35 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L  114 (326)
T 3uim_A           35 KNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSV  114 (326)
T ss_dssp             TTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEECCSSCCEEEEECCTTCBH
T ss_pred             ceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEecCCceEEEEEeccCCCH
Confidence            56899999999999998889999999997652   234688999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-------
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-------  487 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-------  487 (640)
                      .+++..... ...+++|..+..++.|++.||+|||+.+.++|+||||||+|||++.++.+||+|||+++....       
T Consensus       115 ~~~l~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~  193 (326)
T 3uim_A          115 ASCLRERPE-SQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTT  193 (326)
T ss_dssp             HHHHHCCST-TCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCSSCEECCSSSSCEEC
T ss_pred             HHHHHhccc-cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCccccccCcccccccc
Confidence            999986542 233589999999999999999999976445799999999999999999999999999986542       


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCC------CCCcchHHHHHHhhcccccccccc
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKG------DGELGIVKWVQMMGQDESAWEVFD  561 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~------~~~~~~~~~~~~~~~~~~~~~~~d  561 (640)
                      ...+|..|+|||++       ....++.++|||||||++|||+||+.||.      ........|+.............+
T Consensus       194 ~~~gt~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (326)
T 3uim_A          194 AVRGTIGHIAPEYL-------STGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVD  266 (326)
T ss_dssp             CCCSCGGGCCHHHH-------HHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSC
T ss_pred             cccCCcCccCHHHh-------ccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcC
Confidence            23368899999964       33456789999999999999999999996      234456667666555544444444


Q ss_pred             hhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       562 ~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                      ...... ...+....+.+++..||+.||++|||+.||++.|+....
T Consensus       267 ~~~~~~-~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~~  311 (326)
T 3uim_A          267 VDLQGN-YKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGL  311 (326)
T ss_dssp             TTCTTS-CCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSSC
T ss_pred             hhhccc-cCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcch
Confidence            443222 234667789999999999999999999999999987543

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=1.5e-41  Score=352.51  Aligned_cols=258  Identities=29%  Similarity=0.460  Sum_probs=209.6

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      .+.||+|+||.||+|+..++..||||++...  ...+.+.+|++++++++||||+++++++...+..++||||+++|+|.
T Consensus        44 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~  123 (321)
T 2qkw_B           44 KFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLK  123 (321)
T ss_dssp             CCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCEEEEECCTTCBTG
T ss_pred             cceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEEcCCCCcHH
Confidence            5679999999999999888999999998755  33467889999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--------
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--------  487 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--------  487 (640)
                      +++..... ....++|..++.++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++....        
T Consensus       124 ~~l~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~  199 (321)
T 2qkw_B          124 RHLYGSDL-PTMSMSWEQRLEICIGAARGLHYLHT---RAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLST  199 (321)
T ss_dssp             GGSSSSCC-CSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCSTTEEECTTCCEEECCCTTCEECSSSSCCCCBC
T ss_pred             HHHhccCC-CccccCHHHHHHHHHHHHHHHHHhcC---CCeecCCCCHHHEEECCCCCEEEeeccccccccccccccccc
Confidence            99976532 22358999999999999999999995   4599999999999999999999999999876432        


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC----CcchHHHHHHhhcccccccccchh
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG----ELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~----~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                      ...++..|+|||++       ....++.++|||||||++|||+||+.||...    ......|..............++.
T Consensus       200 ~~~gt~~y~aPE~~-------~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (321)
T 2qkw_B          200 VVKGTLGYIDPEYF-------IKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPN  272 (321)
T ss_dssp             CCEEETTTCCHHHH-------HHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSS
T ss_pred             ccCCCccccCHHHh-------cCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChh
Confidence            12357889999965       3345778999999999999999999998742    233455554433333333444433


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                      .... ...+....+.+++.+||+.||++|||+.|+++.|+.+..
T Consensus       273 ~~~~-~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~  315 (321)
T 2qkw_B          273 LADK-IRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALR  315 (321)
T ss_dssp             CTTC-SCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             hccc-cCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhh
Confidence            3211 124566778889999999999999999999999999764

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=6.2e-42  Score=380.62  Aligned_cols=240  Identities=18%  Similarity=0.248  Sum_probs=191.2

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      ..+.||+|+||+||+|+. .+|+.||+|++...  ...+.+.+|+++|+.++|||||+++++|.+.+.+|||||||++|+
T Consensus       161 i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~~gg~  240 (573)
T 3uto_A          161 IHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGE  240 (573)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECCCCCB
T ss_pred             EEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeecCCCc
Confidence            357899999999999996 46899999998755  334668899999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC--CCeEEccCCcccccCCC---
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL--GNACISDIGVHQLFHTP---  488 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~--~~~kl~DfGl~~~~~~~---  488 (640)
                      |.+++....    ..+++.....++.||+.||+|||+.   +|+||||||+|||++.+  +.+||+|||+++.+...   
T Consensus       241 L~~~i~~~~----~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~  313 (573)
T 3uto_A          241 LFEKVADEH----NKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSV  313 (573)
T ss_dssp             HHHHHTCTT----SCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEE
T ss_pred             HHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeeccceeEccCCCce
Confidence            999997543    2589999999999999999999954   59999999999999854  89999999999887542   


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                        .++|+.|+|||++.       ...|+.++||||+||++|||++|+.||.+....  +..........  . +...   
T Consensus       314 ~~~~GT~~y~APEv~~-------~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~--~~~~~i~~~~~--~-~~~~---  378 (573)
T 3uto_A          314 KVTTGTAEFAAPEVAE-------GKPVGYYTDMWSVGVLSYILLSGLSPFGGENDD--ETLRNVKSCDW--N-MDDS---  378 (573)
T ss_dssp             EEECSSGGGCCHHHHT-------TCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH--HHHHHHHTTCC--C-CCSG---
T ss_pred             eeeEECccccCHHHhC-------CCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH--HHHHHHHhCCC--C-CCcc---
Confidence              35799999999753       345778999999999999999999999754321  11111111100  0 0000   


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                        .......++.+++.+||+.||++|||+.|+++
T Consensus       379 --~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~  410 (573)
T 3uto_A          379 --AFSGISEDGKDFIRKLLLADPNTRMTIHQALE  410 (573)
T ss_dssp             --GGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             --cccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence              01111234567788899999999999999875

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=1.4e-41  Score=352.83  Aligned_cols=263  Identities=24%  Similarity=0.319  Sum_probs=197.2

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEecccc-chHHHHHHHHHHhccCCCcccceeEEEEcCC----eEEEEEeccCC
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERK-KKREVDEWLRVIGGLRHSNIVSIRAYCNGKD----ELFLVYDYLPH  411 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~-~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~----~~~lV~Ey~~~  411 (640)
                      ..++||+|+||.||+|+.. ++.||||++.... .......|+.++++++||||+++++++....    ..++||||+++
T Consensus        28 ~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~  106 (322)
T 3soc_A           28 LLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEK  106 (322)
T ss_dssp             EEEEEECSTTCEEEEEEET-TEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTT
T ss_pred             hhheecccCceEEEEEEEC-CCEEEEEEeecCchHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEecCCC
Confidence            3578999999999999876 6899999997653 3345567888999999999999999998743    47999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcC-------CCCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY-------NKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-------~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      |+|.++++..      .++|..+..++.|++.||+|||+.       ..++|+||||||+|||++.++.+||+|||+++.
T Consensus       107 g~L~~~l~~~------~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~  180 (322)
T 3soc_A          107 GSLSDFLKAN------VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALK  180 (322)
T ss_dssp             CBHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             CCHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCcccc
Confidence            9999999754      489999999999999999999954       011699999999999999999999999999976


Q ss_pred             cCC--------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHHHHHHhhcccc
Q 006559          485 FHT--------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVKWVQMMGQDES  555 (640)
Q Consensus       485 ~~~--------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~~~~~~~~~~~  555 (640)
                      ...        ...+|..|+|||++.+...  ....++.++|||||||++|||+||+.||..... ....+.........
T Consensus       181 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~--~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~  258 (322)
T 3soc_A          181 FEAGKSAGDTHGQVGTRRYMAPEVLEGAIN--FQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPS  258 (322)
T ss_dssp             ECTTSCCCCCTTCCCCGGGCCHHHHTTCCC--CCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCC
T ss_pred             cccccCccccccCccCccccCHhhcccccc--cCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCc
Confidence            532        1346889999998643211  113456789999999999999999999974221 11111111111110


Q ss_pred             cccc--------cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          556 AWEV--------FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       556 ~~~~--------~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ...+        ..+.+...........++.+++.+||+.||++|||+.||++.|+++...
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~  319 (322)
T 3soc_A          259 LEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL  319 (322)
T ss_dssp             HHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence            0000        0000000001123455688899999999999999999999999998754

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=5.1e-41  Score=346.54  Aligned_cols=253  Identities=27%  Similarity=0.385  Sum_probs=190.4

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ..+.||+|+||.||+|+. .+..||||++....    ..+.+.+|++++++++||||+++++++...+..++||||+++|
T Consensus        41 i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~  119 (309)
T 3p86_A           41 IKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRG  119 (309)
T ss_dssp             EEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEECCTTC
T ss_pred             eeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEecCCCC
Confidence            357899999999999987 57889999987552    2346788999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      +|.+++....  ....+++..++.++.|++.||+|||+.+ ++|+||||||+|||++.++.+||+|||+++....     
T Consensus       120 ~L~~~l~~~~--~~~~~~~~~~~~i~~qi~~aL~~LH~~~-~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~  196 (309)
T 3p86_A          120 SLYRLLHKSG--AREQLDERRRLSMAYDVAKGMNYLHNRN-PPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSS  196 (309)
T ss_dssp             BHHHHHHSTT--HHHHSCHHHHHHHHHHHHHHHHHHHTSS-SCCCCTTCCGGGEEECTTCCEEECCCC------------
T ss_pred             cHHHHHhhcC--CCCCCCHHHHHHHHHHHHHHHHHHHcCC-CCEECCCCChhhEEEeCCCcEEECCCCCCcccccccccc
Confidence            9999998643  1124889999999999999999999532 2399999999999999999999999999876543     


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                       ...+|..|+|||++.       ...++.++|||||||++|||+||+.||......  ............       ...
T Consensus       197 ~~~~gt~~y~aPE~~~-------~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~--~~~~~~~~~~~~-------~~~  260 (309)
T 3p86_A          197 KSAAGTPEWMAPEVLR-------DEPSNEKSDVYSFGVILWELATLQQPWGNLNPA--QVVAAVGFKCKR-------LEI  260 (309)
T ss_dssp             -----CCTTSCHHHHT-------TCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHH--HHHHHHHHSCCC-------CCC
T ss_pred             ccCCCCccccChhhhc-------CCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhcCCC-------CCC
Confidence             234688999999753       345678999999999999999999999753321  111111100000       001


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCCCC
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSID  612 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~~~  612 (640)
                      +...   ..++.+++.+||+.||++|||+.++++.|+.+......+
T Consensus       261 ~~~~---~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~~p~  303 (309)
T 3p86_A          261 PRNL---NPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAVPP  303 (309)
T ss_dssp             CTTS---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-----
T ss_pred             CccC---CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhCCCC
Confidence            1111   234667888899999999999999999999998765443

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=5e-41  Score=346.73  Aligned_cols=246  Identities=26%  Similarity=0.447  Sum_probs=196.0

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      .++||+|+||.||+|+.. ++..||+|++...  ...+.+.+|++++++++||||+++++++...+..++||||+++|+|
T Consensus        15 ~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L   94 (310)
T 3s95_A           15 GEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTL   94 (310)
T ss_dssp             EEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCTTCBH
T ss_pred             cceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEecCCCcH
Confidence            578999999999999964 5889999988654  3456788999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-------
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-------  487 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-------  487 (640)
                      .+++....    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....       
T Consensus        95 ~~~l~~~~----~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~  167 (310)
T 3s95_A           95 RGIIKSMD----SQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEG  167 (310)
T ss_dssp             HHHHHHCC----TTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTCEECC--------
T ss_pred             HHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccceecccccccccc
Confidence            99998643    2589999999999999999999954   599999999999999999999999999976532       


Q ss_pred             -------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccc
Q 006559          488 -------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDE  554 (640)
Q Consensus       488 -------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~  554 (640)
                                   ...+|..|+|||++       ....++.++|||||||++|||++|..|+...........      .
T Consensus       168 ~~~~~~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~------~  234 (310)
T 3s95_A          168 LRSLKKPDRKKRYTVVGNPYWMAPEMI-------NGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFG------L  234 (310)
T ss_dssp             ------------CCCCSCGGGCCHHHH-------TTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSS------B
T ss_pred             cccccccccccccccCCCcceeCHHHh-------cCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHh------h
Confidence                         23467889999975       345677899999999999999999999864221100000      0


Q ss_pred             ccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          555 SAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       555 ~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ......+..  .+.   .....+.+++.+||+.||++|||+.++++.|++++..
T Consensus       235 ~~~~~~~~~--~~~---~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~  283 (310)
T 3s95_A          235 NVRGFLDRY--CPP---NCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMH  283 (310)
T ss_dssp             CHHHHHHHT--CCT---TCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             hhhcccccc--CCC---CCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence            000000000  011   1123467788889999999999999999999998754

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=2.3e-40  Score=334.50  Aligned_cols=244  Identities=23%  Similarity=0.383  Sum_probs=198.7

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHH
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~  416 (640)
                      .+.||+|+||.||+|+..++..||+|++... ...+++.+|++++++++||||+++++++...+..++||||+++|+|.+
T Consensus        15 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~   94 (269)
T 4hcu_A           15 VQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSD   94 (269)
T ss_dssp             EEEEEECSSCEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHH
T ss_pred             eheecCCCccEEEEEEecCCCeEEEEEecccccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCCCCcHHH
Confidence            5679999999999999988899999999866 356778999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-------Cc
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-------PF  489 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-------~~  489 (640)
                      ++.....    .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....       ..
T Consensus        95 ~l~~~~~----~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  167 (269)
T 4hcu_A           95 YLRTQRG----LFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGT  167 (269)
T ss_dssp             HHHTTTT----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTST
T ss_pred             HHHhcCc----ccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEeccccccccccccccccccCc
Confidence            9975432    588999999999999999999954   599999999999999999999999999986542       12


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..+..|+|||++       ....++.++||||+||++|||+| |+.||......  ...........   ..     .+.
T Consensus       168 ~~~~~y~aPE~~-------~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~--~~~~~~~~~~~---~~-----~~~  230 (269)
T 4hcu_A          168 KFPVKWASPEVF-------SFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS--EVVEDISTGFR---LY-----KPR  230 (269)
T ss_dssp             TCCGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHTTCC---CC-----CCT
T ss_pred             ccccccCCHHHh-------cCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHH--HHHHHHhcCcc---CC-----CCC
Confidence            335679999964       34567889999999999999999 99999754321  11222111100   00     011


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ..   ...+.+++..||+.||++||++.++++.|+++...
T Consensus       231 ~~---~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~  267 (269)
T 4hcu_A          231 LA---STHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES  267 (269)
T ss_dssp             TS---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             cC---CHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence            11   23466778889999999999999999999998865

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=1.1e-40  Score=352.94  Aligned_cols=249  Identities=20%  Similarity=0.361  Sum_probs=195.9

Q ss_pred             hhccccccCcceEEEEEeC--------CCcEEEEEEecccc---chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEE
Q 006559          337 SAELLGKGCVGATYKVVLD--------GGDVVVVKRIRERK---KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFL  404 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~--------~~~~vavK~l~~~~---~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  404 (640)
                      ..+.||+|+||.||+|+..        ++..||||.++...   ..+.+.+|+++++++ +||||++++++|...+..|+
T Consensus        85 ~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~l  164 (370)
T 2psq_A           85 LGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYV  164 (370)
T ss_dssp             EEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSSSCEE
T ss_pred             eeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCCCEEE
Confidence            3578999999999999852        34579999997653   235678899999999 89999999999999999999


Q ss_pred             EEeccCCCCHHHhhccCCCC-----------CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC
Q 006559          405 VYDYLPHGSLHSLLHGSRGP-----------GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN  473 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~  473 (640)
                      ||||+++|+|.+++......           ....+++..++.++.|++.||+|||+   .+|+||||||+|||++.++.
T Consensus       165 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~  241 (370)
T 2psq_A          165 IVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTENNV  241 (370)
T ss_dssp             EEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCC
T ss_pred             EEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCeeccccchhhEEECCCCC
Confidence            99999999999999865321           11247899999999999999999995   45999999999999999999


Q ss_pred             eEEccCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchH
Q 006559          474 ACISDIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIV  544 (640)
Q Consensus       474 ~kl~DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~  544 (640)
                      +||+|||+++.....        ...+..|+|||++.       ...++.++|||||||++|||+| |+.||....... 
T Consensus       242 ~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~-------~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~-  313 (370)
T 2psq_A          242 MKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALF-------DRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE-  313 (370)
T ss_dssp             EEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHH-------TCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG-
T ss_pred             EEEccccCCcccCcccceecccCCCcccceECHhHhc-------CCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHH-
Confidence            999999999865421        23356899999753       3567789999999999999999 999997543221 


Q ss_pred             HHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          545 KWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       545 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                       ...........        ..+.   ....++.+++..||+.||++||++.|+++.|+++...
T Consensus       314 -~~~~~~~~~~~--------~~~~---~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~  365 (370)
T 2psq_A          314 -LFKLLKEGHRM--------DKPA---NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTL  365 (370)
T ss_dssp             -HHHHHHTTCCC--------CCCT---TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             -HHHHHhcCCCC--------CCCC---CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence             11111111000        0111   1223567788889999999999999999999998753

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=1.8e-40  Score=340.52  Aligned_cols=236  Identities=20%  Similarity=0.310  Sum_probs=189.2

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      .+.||+|+||.||+|+. .+++.||||++...  ...+.+.+|+.++++++||||+++++++...+..++||||+++|+|
T Consensus        25 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L  104 (297)
T 3fxz_A           25 FEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL  104 (297)
T ss_dssp             CEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBH
T ss_pred             eeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEECCCCCCH
Confidence            46799999999999984 56889999998654  3456688999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------C
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------P  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------~  488 (640)
                      .+++...      .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....      .
T Consensus       105 ~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~  175 (297)
T 3fxz_A          105 TDVVTET------CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST  175 (297)
T ss_dssp             HHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCC
T ss_pred             HHHHhhc------CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccccCC
Confidence            9999754      378999999999999999999954   599999999999999999999999999876542      2


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..+|..|+|||++       ....++.++|||||||++|||+||+.||.........+........        ......
T Consensus       176 ~~gt~~y~aPE~~-------~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~--------~~~~~~  240 (297)
T 3fxz_A          176 MVGTPYWMAPEVV-------TRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTP--------ELQNPE  240 (297)
T ss_dssp             CCSCGGGCCHHHH-------HCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSC--------CCSCGG
T ss_pred             ccCCcCccChhhh-------cCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCC--------CCCCcc
Confidence            3568899999975       3456778999999999999999999999754321111111101000        000111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .   ....+.+++.+||+.||++|||+.|+++
T Consensus       241 ~---~~~~~~~li~~~l~~dp~~Rps~~ell~  269 (297)
T 3fxz_A          241 K---LSAIFRDFLNRCLEMDVEKRGSAKELLQ  269 (297)
T ss_dssp             G---SCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             c---cCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence            1   2234667788899999999999999875

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=3.1e-41  Score=358.13  Aligned_cols=245  Identities=22%  Similarity=0.354  Sum_probs=195.8

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccccc---hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERKK---KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~---~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ..+.||+|+||.||+|+.. ++..||||.++....   .+.+.+|++++++++||||+++++++...+..++||||+++|
T Consensus       118 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g  197 (377)
T 3cbl_A          118 LGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGG  197 (377)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTC
T ss_pred             EeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEEcCCCC
Confidence            3578999999999999976 688999999876522   345778999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc---
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF---  489 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~---  489 (640)
                      +|.++++...    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++......   
T Consensus       198 ~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~  270 (377)
T 3cbl_A          198 DFLTFLRTEG----ARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAA  270 (377)
T ss_dssp             BHHHHHHHHG----GGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEEC
T ss_pred             CHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCCceecCCCceee
Confidence            9999997542    2488999999999999999999954   59999999999999999999999999998654321   


Q ss_pred             -----cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchh
Q 006559          490 -----FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       490 -----~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                           ..+..|+|||++       ....++.++|||||||++|||+| |+.||.......  ..+.......        
T Consensus       271 ~~~~~~~~~~y~aPE~~-------~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~--~~~~~~~~~~--------  333 (377)
T 3cbl_A          271 SGGLRQVPVKWTAPEAL-------NYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQ--TREFVEKGGR--------  333 (377)
T ss_dssp             CSSCCEEEGGGSCHHHH-------HHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHH--HHHHHHTTCC--------
T ss_pred             cCCCCCCCcCcCCHhHh-------ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcCCC--------
Confidence                 125579999965       33457789999999999999999 999997533211  1111111100        


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ...+.   ....++.+++..||+.||++|||+.++++.|+++..+
T Consensus       334 ~~~~~---~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~  375 (377)
T 3cbl_A          334 LPCPE---LCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR  375 (377)
T ss_dssp             CCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCCCC---CCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence            00111   1223567788889999999999999999999998754

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=1.5e-40  Score=345.66  Aligned_cols=246  Identities=21%  Similarity=0.310  Sum_probs=195.2

Q ss_pred             hhccccccCcceEEEEEeC----CCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLD----GGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~----~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ..+.||+|+||.||+|+..    .+..||||.++..   ...+.+.+|++++++++||||+++++++...+..++||||+
T Consensus        53 i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  132 (325)
T 3kul_A           53 IEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYM  132 (325)
T ss_dssp             EEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEEEECC
T ss_pred             EeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEEeeCC
Confidence            3578999999999999974    3456999999864   23456889999999999999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-  488 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-  488 (640)
                      ++|+|.++++...    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++..... 
T Consensus       133 ~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  205 (325)
T 3kul_A          133 ENGSLDTFLRTHD----GQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDP  205 (325)
T ss_dssp             TTCBHHHHHHTTT----TCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCSSCEECC---
T ss_pred             CCCcHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECCCCcccccccCc
Confidence            9999999997543    2589999999999999999999954   5999999999999999999999999999876432 


Q ss_pred             --------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccc
Q 006559          489 --------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       489 --------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  559 (640)
                              ...|..|+|||++       ....++.++|||||||++|||++ |+.||......  ...........    
T Consensus       206 ~~~~~~~~~~~t~~y~aPE~~-------~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--~~~~~~~~~~~----  272 (325)
T 3kul_A          206 DAAYTTTGGKIPIRWTAPEAI-------AFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNR--DVISSVEEGYR----  272 (325)
T ss_dssp             -CCEECC---CCGGGSCHHHH-------HHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHH--HHHHHHHTTCC----
T ss_pred             cceeeccCCCCcccccCHhHh-------cCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHH--HHHHHHHcCCC----
Confidence                    1225579999964       33457789999999999999999 99999753321  11111111100    


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG  609 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~  609 (640)
                          ...+.   .....+.+++..||+.||++|||+.+|++.|+.+....
T Consensus       273 ----~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~  315 (325)
T 3kul_A          273 ----LPAPM---GCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSP  315 (325)
T ss_dssp             ----CCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSC
T ss_pred             ----CCCCC---CcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCc
Confidence                00111   12235677888899999999999999999999987553

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=8.6e-41  Score=353.94  Aligned_cols=245  Identities=21%  Similarity=0.337  Sum_probs=188.0

Q ss_pred             hhccccccCcceEEEEEeC----CCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLD----GGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~----~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ..+.||+|+||.||+|+..    ++..||||.++..   ...+++.+|++++++++||||+++++++...+..++||||+
T Consensus        49 ~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  128 (373)
T 2qol_A           49 IDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYM  128 (373)
T ss_dssp             CCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred             eeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEEEeCC
Confidence            3578999999999999864    5678999999754   23456889999999999999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF  489 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~  489 (640)
                      ++|+|.++++...    ..+++..++.++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++......
T Consensus       129 ~~~sL~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  201 (373)
T 2qol_A          129 ENGSLDSFLRKHD----AQFTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDP  201 (373)
T ss_dssp             TTCBHHHHHHTTT----TCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC----------
T ss_pred             CCCcHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCcceEEEcCCCCEEECcCccccccccCC
Confidence            9999999997543    258999999999999999999995   459999999999999999999999999998764321


Q ss_pred             ---------cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccc
Q 006559          490 ---------FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       490 ---------~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  559 (640)
                               ..+..|+|||++       ....++.++|||||||++|||++ |+.||.....  ....+.......    
T Consensus       202 ~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~--~~~~~~i~~~~~----  268 (373)
T 2qol_A          202 EAAYTTRGGKIPIRWTSPEAI-------AYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSN--QDVIKAVDEGYR----  268 (373)
T ss_dssp             ------------CTTSCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCH--HHHHHHHHTTEE----
T ss_pred             ccceeccCCCcCCCccChhhh-------ccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHcCCC----
Confidence                     124579999964       34567889999999999999998 9999975332  111221111100    


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                          ....   ......+.+++..||+.||++||+|.+|+++|+++...
T Consensus       269 ----~~~~---~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~  310 (373)
T 2qol_A          269 ----LPPP---MDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRN  310 (373)
T ss_dssp             ----CCCC---TTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             ----CCCC---ccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence                0001   12234577888899999999999999999999998754

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=7.6e-40  Score=333.13  Aligned_cols=245  Identities=22%  Similarity=0.362  Sum_probs=196.0

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHH
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~  416 (640)
                      .+.||+|+||.||++...++..||||+++.. ...+++.+|++++++++||||+++++++...+..++||||+++|+|.+
T Consensus        29 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~  108 (283)
T 3gen_A           29 LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLN  108 (283)
T ss_dssp             EEECC---CEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCCTTCBHHH
T ss_pred             HhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEeccCCCcHHH
Confidence            5689999999999999998889999999866 356778999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-------Cc
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-------PF  489 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-------~~  489 (640)
                      ++....    ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++....       ..
T Consensus       109 ~l~~~~----~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  181 (283)
T 3gen_A          109 YLREMR----HRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGS  181 (283)
T ss_dssp             HHHCGG----GCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHSTTST
T ss_pred             HHHHhc----cCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCccceEEEcCCCCEEEccccccccccccccccccCC
Confidence            997632    258999999999999999999995   4599999999999999999999999999986542       12


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..+..|+|||++       ....++.++|||||||++|||+| |+.||......  ............   .     .+.
T Consensus       182 ~~~~~y~aPE~~-------~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~--~~~~~~~~~~~~---~-----~~~  244 (283)
T 3gen_A          182 KFPVRWSPPEVL-------MYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS--ETAEHIAQGLRL---Y-----RPH  244 (283)
T ss_dssp             TSCGGGCCHHHH-------HHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHH--HHHHHHHTTCCC---C-----CCT
T ss_pred             ccCcccCCHHHh-------ccCCCCchhhHHHHHHHHHHHHhCCCCCccccChh--HHHHHHhcccCC---C-----CCC
Confidence            335679999964       34457789999999999999999 99999753321  111111111000   0     011


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG  609 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~  609 (640)
                      ..   ...+.+++..||+.||++|||+.++++.|+++..+.
T Consensus       245 ~~---~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~e  282 (283)
T 3gen_A          245 LA---SEKVYTIMYSCWHEKADERPTFKILLSNILDVMDEE  282 (283)
T ss_dssp             TC---CHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             cC---CHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhcc
Confidence            11   234667888899999999999999999999987653

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=3.3e-40  Score=358.32  Aligned_cols=244  Identities=25%  Similarity=0.353  Sum_probs=197.3

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcCC-eEEEEEeccCCCCHHH
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKD-ELFLVYDYLPHGSLHS  416 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~-~~~lV~Ey~~~gsL~~  416 (640)
                      .+.||+|+||.||+|... ++.||||.++.....+.+.+|++++++++|||||++++++...+ ..++|||||++|+|.+
T Consensus       198 ~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~~~g~L~~  276 (450)
T 1k9a_A          198 LQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVD  276 (450)
T ss_dssp             EEEEEECSSEEEEEEEET-TEEEEEEEESSCTTSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECCTTCBHHH
T ss_pred             EeeecCcCCeeEEEEEec-CCeEEEEEeCCchHHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEecCCCcHHH
Confidence            568999999999999986 67899999987777788999999999999999999999987765 7999999999999999


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---ccccc
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---FFIND  493 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---~~~~~  493 (640)
                      ++....   ...+++..++.++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.....   ...+.
T Consensus       277 ~l~~~~---~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~  350 (450)
T 1k9a_A          277 YLRSRG---RSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV  350 (450)
T ss_dssp             HHHHHC---TTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCEECC------CCCT
T ss_pred             HHHhcC---CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCcccccccccCCCCCc
Confidence            998643   22478999999999999999999954   5999999999999999999999999999865422   23467


Q ss_pred             cccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHH
Q 006559          494 AYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEE  572 (640)
Q Consensus       494 ~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  572 (640)
                      .|+|||++       ....++.++|||||||++|||+| |+.||.......  ..........        ...+.   .
T Consensus       351 ~y~aPE~~-------~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~--~~~~i~~~~~--------~~~p~---~  410 (450)
T 1k9a_A          351 KWTAPEAL-------REKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD--VVPRVEKGYK--------MDAPD---G  410 (450)
T ss_dssp             TTSCHHHH-------HSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTT--HHHHHHTTCC--------CCCCT---T
T ss_pred             ceeCHHHh-------cCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcCCC--------CCCCC---c
Confidence            89999964       34567889999999999999999 999997533221  1111111100        00111   2


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          573 EMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       573 ~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ...++.+++..||+.||++|||+.++++.|+++...
T Consensus       411 ~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~  446 (450)
T 1k9a_A          411 CPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH  446 (450)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence            234567788889999999999999999999998754

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=3.8e-40  Score=332.59  Aligned_cols=244  Identities=24%  Similarity=0.371  Sum_probs=197.2

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHH
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~  416 (640)
                      .+.||+|+||.||+|+..++..||||.++.. ...+++.+|++++++++||||+++++++...+..++||||+++|+|.+
T Consensus        13 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~   92 (268)
T 3sxs_A           13 LKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLN   92 (268)
T ss_dssp             EEEEEEETTEEEEEEEETTTEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHH
T ss_pred             eeeeccCCCceEEEEEecCceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEccCCCcHHH
Confidence            5679999999999999998889999999866 356778999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-------c
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-------F  489 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-------~  489 (640)
                      ++....    ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++.....       .
T Consensus        93 ~l~~~~----~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~  165 (268)
T 3sxs_A           93 YLRSHG----KGLEPSQLLEMCYDVCEGMAFLES---HQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGT  165 (268)
T ss_dssp             HHHHHG----GGCCHHHHHHHHHHHHHHHHHHHH---TTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEECCSC
T ss_pred             HHHHcC----CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCcCcceEEECCCCCEEEccCccceecchhhhhcccCC
Confidence            997542    248899999999999999999995   45999999999999999999999999999865432       1


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..+..|+|||++       ....++.++||||||+++|||+| |+.||......  ............   ..     +.
T Consensus       166 ~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~~~~~~~~---~~-----~~  228 (268)
T 3sxs_A          166 KFPVKWSAPEVF-------HYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNS--EVVLKVSQGHRL---YR-----PH  228 (268)
T ss_dssp             CCCGGGCCHHHH-------HHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHH--HHHHHHHTTCCC---CC-----CT
T ss_pred             CcCcccCCHHHH-------hccCCchhhhhHHHHHHHHHHHcCCCCCccccChH--HHHHHHHcCCCC---CC-----CC
Confidence            235579999964       33456789999999999999999 99999753321  111111111100   00     11


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ..   ...+.+++..||+.||++|||+.++++.|++++.+
T Consensus       229 ~~---~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (268)
T 3sxs_A          229 LA---SDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK  265 (268)
T ss_dssp             TS---CHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred             cC---hHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence            11   22466788889999999999999999999999865

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.9e-40  Score=338.30  Aligned_cols=249  Identities=22%  Similarity=0.355  Sum_probs=192.9

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHHh
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSL  417 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~~  417 (640)
                      .+.||+|+||.||+|+.. ++.||||.+......+.+.+|++++++++||||+++++++.  +..++||||+++|+|.++
T Consensus        13 ~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~~~~~L~~~   89 (307)
T 2eva_A           13 EEVVGRGAFGVVCKAKWR-AKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYAEGGSLYNV   89 (307)
T ss_dssp             EEEEECCSSSEEEEEEET-TEEEEEEECSSTTHHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECCTTCBHHHH
T ss_pred             eeEeecCCCceEEEEEEC-CeeEEEEEecChhHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcCCCCCHHHH
Confidence            578999999999999986 67899999987666778899999999999999999999886  457999999999999999


Q ss_pred             hccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC-eEEccCCcccccCC---Cccccc
Q 006559          418 LHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN-ACISDIGVHQLFHT---PFFIND  493 (640)
Q Consensus       418 l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~-~kl~DfGl~~~~~~---~~~~~~  493 (640)
                      +.....  ...+++..++.++.|+++||+|||+.+..+|+||||||+|||++.++. +||+|||+++....   ...++.
T Consensus        90 l~~~~~--~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~  167 (307)
T 2eva_A           90 LHGAEP--LPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSA  167 (307)
T ss_dssp             HHCSSS--EECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC------------CCT
T ss_pred             HhccCC--CCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccccccCCCCC
Confidence            986431  124788899999999999999999754467999999999999998886 79999999876543   234688


Q ss_pred             cccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHHH
Q 006559          494 AYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEE  573 (640)
Q Consensus       494 ~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  573 (640)
                      .|+|||++       ....++.++|||||||++|||+||+.||...................      +..  ..   ..
T Consensus       168 ~y~aPE~~-------~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~------~~~--~~---~~  229 (307)
T 2eva_A          168 AWMAPEVF-------EGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTR------PPL--IK---NL  229 (307)
T ss_dssp             TSSCHHHH-------TCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCC------CCC--BT---TC
T ss_pred             ceEChhhh-------CCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCC------CCc--cc---cc
Confidence            99999975       33467789999999999999999999997543332222211111100      000  01   11


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 006559          574 MRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG  609 (640)
Q Consensus       574 ~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~  609 (640)
                      ...+.+++.+||+.||++|||+.++++.|+.+....
T Consensus       230 ~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~  265 (307)
T 2eva_A          230 PKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYF  265 (307)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGC
T ss_pred             CHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhc
Confidence            234667888899999999999999999999987654

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=3.9e-40  Score=342.55  Aligned_cols=235  Identities=20%  Similarity=0.262  Sum_probs=188.4

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|+. .+|+.||||++....    ..+.+.+|+++++.++||||+++++++...+..|+||||+++|
T Consensus        20 ~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~e~~~~~   99 (328)
T 3fe3_A           20 LKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGG   99 (328)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTC
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEECCCCC
Confidence            56899999999999996 678999999997542    2345778999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      +|.+++....     .+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....     
T Consensus       100 ~L~~~l~~~~-----~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~  171 (328)
T 3fe3_A          100 EVFDYLVAHG-----RMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLD  171 (328)
T ss_dssp             BHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCGGG
T ss_pred             cHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeeccCceecCCCCccc
Confidence            9999997543     488999999999999999999954   599999999999999999999999999976542     


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      ...+|..|+|||++.+.      ...+.++||||+||++|||+||+.||......  ...+......         ...+
T Consensus       172 ~~~gt~~y~aPE~~~~~------~~~~~~~DiwslG~il~ell~g~~pf~~~~~~--~~~~~i~~~~---------~~~p  234 (328)
T 3fe3_A          172 AFCGAPPYAAPELFQGK------KYDGPEVDVWSLGVILYTLVSGSLPFDGQNLK--ELRERVLRGK---------YRIP  234 (328)
T ss_dssp             TTSSSGGGCCHHHHHTC------CCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCC---------CCCC
T ss_pred             cccCCcceeCcccccCC------CcCCchhhhhhhHHHHHHHHhCCCCCCCCCHH--HHHHHHHhCC---------CCCC
Confidence            34568899999975322      12247899999999999999999999754322  2222211110         0111


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ...   ..++.+++.+||+.||++|||+.|+++
T Consensus       235 ~~~---s~~~~~li~~~L~~dP~~R~t~~eil~  264 (328)
T 3fe3_A          235 FYM---STDCENLLKRFLVLNPIKRGTLEQIMK  264 (328)
T ss_dssp             TTS---CHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred             CCC---CHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            111   224566778899999999999999865

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=1.8e-40  Score=360.94  Aligned_cols=245  Identities=21%  Similarity=0.373  Sum_probs=197.6

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ..+.||+|+||.||+|+..++..||||.++.. ...+.+.+|++++++++|||||++++++. .+..++|||||++|+|.
T Consensus       192 ~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~~~~g~L~  270 (454)
T 1qcf_A          192 LEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEFMAKGSLL  270 (454)
T ss_dssp             EEEEEECCSSEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECCCTTCBHH
T ss_pred             EEEEcccCCceEEEEEEECCccEEEEEEecCCCccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEeecCCCcHH
Confidence            35789999999999999988899999999865 45678999999999999999999999986 66789999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-------
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-------  488 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-------  488 (640)
                      ++++...   ...+++..++.++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.....       
T Consensus       271 ~~l~~~~---~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~  344 (454)
T 1qcf_A          271 DFLKSDE---GSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREG  344 (454)
T ss_dssp             HHHHSHH---HHTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHHTTCS
T ss_pred             HHHHhcc---CCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCceeccCC
Confidence            9997532   12478889999999999999999954   5999999999999999999999999999876421       


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      ...+..|+|||++       ....++.++|||||||++|||+| |+.||.+...  .+..+.......        ...+
T Consensus       345 ~~~~~~y~aPE~~-------~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~--~~~~~~i~~~~~--------~~~~  407 (454)
T 1qcf_A          345 AKFPIKWTAPEAI-------NFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN--PEVIRALERGYR--------MPRP  407 (454)
T ss_dssp             SSSCGGGSCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HHHHHHHHHTCC--------CCCC
T ss_pred             CcccccccCHHHh-------ccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHcCCC--------CCCC
Confidence            2235679999964       34567889999999999999999 9999975322  121222111100        0011


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      .   ....++.+++.+||+.||++||||.+|++.|+++...
T Consensus       408 ~---~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~  445 (454)
T 1qcf_A          408 E---NCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTA  445 (454)
T ss_dssp             T---TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSS
T ss_pred             C---CCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhc
Confidence            1   2234577788899999999999999999999998754

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=9e-40  Score=335.46  Aligned_cols=255  Identities=25%  Similarity=0.314  Sum_probs=188.3

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHh--ccCCCcccceeEEEEc----CCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIG--GLRHSNIVSIRAYCNG----KDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~--~l~H~niv~l~~~~~~----~~~~~lV~Ey~~  410 (640)
                      ..+.||+|+||.||+|+. +++.||||++.... ...+..|.+++.  .++||||+++++++..    ....++||||++
T Consensus        12 ~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~-~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~e~~~   89 (301)
T 3q4u_A           12 LLECVGKGRYGEVWRGSW-QGENVAVKIFSSRD-EKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHE   89 (301)
T ss_dssp             EEEEEEECSSEEEEEEEE-TTEEEEEEEECGGG-HHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEECCCT
T ss_pred             EEEeeccCCCcEEEEEEE-CCEEEEEEEecccc-chhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEehhhcc
Confidence            357899999999999988 57889999987543 333444444444  4899999999999754    346899999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcC-----CCCCceecCCCCCCeEECCCCCeEEccCCccccc
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY-----NKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF  485 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-----~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~  485 (640)
                      +|+|.++++..      .+++..++.++.|++.||+|||+.     ...+|+||||||+|||++.++.+||+|||+++..
T Consensus        90 ~g~L~~~l~~~------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~  163 (301)
T 3q4u_A           90 MGSLYDYLQLT------TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMH  163 (301)
T ss_dssp             TCBHHHHHTTC------CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEE
T ss_pred             CCCHHHHHhhc------ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCeeec
Confidence            99999999643      489999999999999999999932     1346999999999999999999999999998764


Q ss_pred             CC----------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhC----------CCCCCCCC---cc
Q 006559          486 HT----------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG----------KMAKGDGE---LG  542 (640)
Q Consensus       486 ~~----------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg----------~~p~~~~~---~~  542 (640)
                      ..          ...+|..|+|||++...... ....++.++|||||||++|||+||          +.||....   ..
T Consensus       164 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~  242 (301)
T 3q4u_A          164 SQSTNQLDVGNNPRVGTKRYMAPEVLDETIQV-DCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPS  242 (301)
T ss_dssp             ETTTTEEECCCCCCCCCGGGCCHHHHTTCCCT-TCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred             ccccccccccccccccccceeChhhhcCcCCC-CcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcc
Confidence            32          22568899999976432111 001345789999999999999999          77876421   11


Q ss_pred             hHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          543 IVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                      .....+.......     .+.............++.+++..||+.||++|||+.+|++.|++|
T Consensus       243 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          243 FEDMRKVVCVDQQ-----RPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             HHHHHHHHTTSCC-----CCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             hhhhhHHHhccCC-----CCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence            1111111111110     111111111124456788899999999999999999999999986

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=1.3e-39  Score=337.88  Aligned_cols=236  Identities=18%  Similarity=0.275  Sum_probs=189.5

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      .+.||+|+||.||+|+.. +|+.||||++...  ...+.+.+|+.++++++||||+++++++...+..++||||+++|+|
T Consensus        50 ~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L  129 (321)
T 2c30_A           50 YVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGAL  129 (321)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEECCCCSCBH
T ss_pred             cEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEecCCCCCH
Confidence            457999999999999976 6899999998754  3456688999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------C
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------P  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------~  488 (640)
                      .+++...      .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....      .
T Consensus       130 ~~~l~~~------~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~  200 (321)
T 2c30_A          130 TDIVSQV------RLNEEQIATVCEAVLQALAYLHA---QGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKS  200 (321)
T ss_dssp             HHHHTTC------CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCC
T ss_pred             HHHHHhc------CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCcEEEeeeeeeeecccCcccccc
Confidence            9998743      48999999999999999999995   4599999999999999999999999999876542      2


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..+|..|+|||++       ....++.++|||||||++|||+||+.||.....  ...........      .+......
T Consensus       201 ~~gt~~y~aPE~~-------~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~--~~~~~~~~~~~------~~~~~~~~  265 (321)
T 2c30_A          201 LVGTPYWMAPEVI-------SRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSP--VQAMKRLRDSP------PPKLKNSH  265 (321)
T ss_dssp             CCSCGGGCCHHHH-------TTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHSS------CCCCTTGG
T ss_pred             ccCCccccCHhhh-------cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHhcCC------CCCcCccc
Confidence            3568899999975       334577899999999999999999999975322  12122111110      00010111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .   ....+.+++.+||+.||++|||+.++++
T Consensus       266 ~---~~~~l~~li~~~l~~dp~~Rps~~ell~  294 (321)
T 2c30_A          266 K---VSPVLRDFLERMLVRDPQERATAQELLD  294 (321)
T ss_dssp             G---SCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             c---CCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            1   1234666778899999999999999876

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=1.7e-39  Score=334.68  Aligned_cols=253  Identities=30%  Similarity=0.505  Sum_probs=199.8

Q ss_pred             ccccccCcceEEEEEeCCCcEEEEEEeccc------cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          339 ELLGKGCVGATYKVVLDGGDVVVVKRIRER------KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~------~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      +.||+|+||.||+|+. ++..||||++...      ...+.+.+|++++++++||||+++++++...+..++||||+++|
T Consensus        37 ~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~  115 (307)
T 2nru_A           37 NKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNG  115 (307)
T ss_dssp             CEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTC
T ss_pred             CccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEEEEecCCceEEEEEecCCC
Confidence            6799999999999986 5788999998643      22466889999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      +|.+++.....  ..+++|..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++....     
T Consensus       116 ~L~~~l~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~  190 (307)
T 2nru_A          116 SLLDRLSCLDG--TPPLSWHMRCKIAQGAANGINFLHE---NHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTV  190 (307)
T ss_dssp             BHHHHHHTGGG--CCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCE
T ss_pred             cHHHHHHhccC--CCCCCHHHHHHHHHHHHHHHHHHhc---CCeecCCCCHHHEEEcCCCcEEEeecccccccccccccc
Confidence            99999874321  2358999999999999999999995   4599999999999999999999999999876532     


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc--chHHHHHHhhcccc-cccccc
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL--GIVKWVQMMGQDES-AWEVFD  561 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~--~~~~~~~~~~~~~~-~~~~~d  561 (640)
                         ...++..|+|||++.        ..++.++|||||||++|||+||+.||.....  ....+.+....... ....++
T Consensus       191 ~~~~~~g~~~y~aPE~~~--------~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (307)
T 2nru_A          191 MTSRIVGTTAYMAPEALR--------GEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYID  262 (307)
T ss_dssp             ECSSCCSCGGGCCHHHHT--------TEECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSC
T ss_pred             cccccCCCcCcCChHHhc--------CCCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhhhhhhhhhhhcc
Confidence               234688999999652        2367899999999999999999999975322  12233332222111 112222


Q ss_pred             hhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       562 ~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                      ....  .........+.+++..||+.||++|||+.+|++.|+++..
T Consensus       263 ~~~~--~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~  306 (307)
T 2nru_A          263 KKMN--DADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA  306 (307)
T ss_dssp             SSCS--CCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred             cccc--ccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence            2221  1123455678889999999999999999999999999864

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=2.7e-39  Score=329.82  Aligned_cols=247  Identities=26%  Similarity=0.421  Sum_probs=193.4

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccccc---------hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEE
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERKK---------KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVY  406 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~---------~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~  406 (640)
                      ..+.||+|+||.||+|+. .+++.||||.+.....         .+.+.+|++++++++||||+++++++.+..  ++||
T Consensus        23 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~lv~  100 (287)
T 4f0f_A           23 YEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP--RMVM  100 (287)
T ss_dssp             EEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--EEEE
T ss_pred             ehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--eEEE
Confidence            356899999999999996 4688999999864311         156889999999999999999999997655  7999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC-----eEEccCCc
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN-----ACISDIGV  481 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~-----~kl~DfGl  481 (640)
                      ||+++|+|.+++....    .++++..+..++.|++.||+|||+.+ ++|+||||||+|||++.++.     +||+|||+
T Consensus       101 e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~l~~~l~~lH~~~-~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~  175 (287)
T 4f0f_A          101 EFVPCGDLYHRLLDKA----HPIKWSVKLRLMLDIALGIEYMQNQN-PPIVHRDLRSPNIFLQSLDENAPVCAKVADFGL  175 (287)
T ss_dssp             ECCTTCBHHHHHHCTT----SCCCHHHHHHHHHHHHHHHHHHHTSS-SCCBCSCCSGGGEEESCCCTTCSCCEEECCCTT
T ss_pred             EecCCCCHHHHHhccc----CCccHHHHHHHHHHHHHHHHHHHhCC-CCeecCCCCcceEEEeccCCCCceeEEeCCCCc
Confidence            9999999999887543    25899999999999999999999532 23999999999999988776     99999999


Q ss_pred             ccccCCC---ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccc
Q 006559          482 HQLFHTP---FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE  558 (640)
Q Consensus       482 ~~~~~~~---~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  558 (640)
                      ++.....   ..++..|+|||++..     ....++.++|||||||++|||+||+.||.........+............
T Consensus       176 ~~~~~~~~~~~~g~~~y~aPE~~~~-----~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  250 (287)
T 4f0f_A          176 SQQSVHSVSGLLGNFQWMAPETIGA-----EEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGLRPT  250 (287)
T ss_dssp             CBCCSSCEECCCCCCTTSCGGGSSC-----SSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCCCCC
T ss_pred             cccccccccccCCCccccCchhhcc-----CCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCCCCC
Confidence            9865432   356889999997521     23446789999999999999999999998655444433333222111100


Q ss_pred             ccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       559 ~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                             ...   ....++.+++..||+.||++|||+.++++.|+++
T Consensus       251 -------~~~---~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l  287 (287)
T 4f0f_A          251 -------IPE---DCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL  287 (287)
T ss_dssp             -------CCT---TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred             -------CCc---ccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence                   111   1223567788889999999999999999999864

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=3e-40  Score=362.74  Aligned_cols=247  Identities=22%  Similarity=0.351  Sum_probs=199.1

Q ss_pred             hhccccccCcceEEEEEeCC-CcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          337 SAELLGKGCVGATYKVVLDG-GDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ..+.||+|+||.||+|++.. +..||||.++.. ...+++.+|++++++++|||||+++++|...+..++|||||++|+|
T Consensus       224 ~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~~~~g~L  303 (495)
T 1opk_A          224 MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL  303 (495)
T ss_dssp             EEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBH
T ss_pred             eeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEccCCCCH
Confidence            35789999999999999765 788999999865 3467789999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC------
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP------  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~------  488 (640)
                      .++++...   ...+++..++.++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++.....      
T Consensus       304 ~~~l~~~~---~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~  377 (495)
T 1opk_A          304 LDYLRECN---RQEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA  377 (495)
T ss_dssp             HHHHHHSC---TTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCEECCT
T ss_pred             HHHHHhcC---cCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccceeccCCceeecC
Confidence            99997643   23588999999999999999999954   5999999999999999999999999999876432      


Q ss_pred             -ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          489 -FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 -~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                       ...+..|+|||++       ....++.++|||||||++|||+| |+.||.......  ..+......        ....
T Consensus       378 ~~~~~~~y~aPE~~-------~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~--~~~~~~~~~--------~~~~  440 (495)
T 1opk_A          378 GAKFPIKWTAPESL-------AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ--VYELLEKDY--------RMER  440 (495)
T ss_dssp             TCCCCGGGCCHHHH-------HHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG--HHHHHHTTC--------CCCC
T ss_pred             CCcCCcceeCHhHH-------hcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcCC--------CCCC
Confidence             1235679999965       34457789999999999999999 999997543221  111111110        0011


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG  609 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~  609 (640)
                      +.   ....++.+++..||+.||++||||.++++.|+.+....
T Consensus       441 ~~---~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~~~  480 (495)
T 1opk_A          441 PE---GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQES  480 (495)
T ss_dssp             CT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCSSS
T ss_pred             CC---CCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHhcc
Confidence            11   12235677888899999999999999999999886543

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=1.2e-40  Score=341.31  Aligned_cols=252  Identities=26%  Similarity=0.417  Sum_probs=192.4

Q ss_pred             hhccccccCcceEEEEEe-----CCCcEEEEEEecccc--chHHHHHHHHHHhccCCCcccceeEEEEcC--CeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVL-----DGGDVVVVKRIRERK--KKREVDEWLRVIGGLRHSNIVSIRAYCNGK--DELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-----~~~~~vavK~l~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lV~E  407 (640)
                      ..+.||+|+||.||+|++     .+++.||||++....  ..+.+.+|++++++++||||+++++++...  ...++|||
T Consensus        14 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e   93 (295)
T 3ugc_A           14 FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIME   93 (295)
T ss_dssp             EEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCEEEEE
T ss_pred             hhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceEEEEE
Confidence            357899999999999985     357889999997653  346688999999999999999999999654  46899999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      |+++|+|.+++....    ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....
T Consensus        94 ~~~~~~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~  166 (295)
T 3ugc_A           94 YLPYGSLRDYLQKHK----ERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQ  166 (295)
T ss_dssp             CCTTCBHHHHHHHCG----GGCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCCSCC----
T ss_pred             eCCCCCHHHHHHhcc----cccCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHhhEEEcCCCeEEEccCcccccccC
Confidence            999999999997653    248899999999999999999995   4599999999999999999999999999987532


Q ss_pred             C---------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccc-
Q 006559          488 P---------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAW-  557 (640)
Q Consensus       488 ~---------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~-  557 (640)
                      .         ..++..|+|||++       ....++.++|||||||++|||+||..|+.....   .+.+......... 
T Consensus       167 ~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~---~~~~~~~~~~~~~~  236 (295)
T 3ugc_A          167 DKEFFKVKEPGESPIFWYAPESL-------TESKFSVASDVWSFGVVLYELFTYIEKSKSPPA---EFMRMIGNDKQGQM  236 (295)
T ss_dssp             ---------CTTCGGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHH---HHHHHHCTTCCTHH
T ss_pred             CcceeeeccCCCCccceeCcHHh-------cCCCCChHHHHHHHHHHHHHHHhcccccCCChH---HHHhhhcCccccch
Confidence            1         2235569999964       345678899999999999999999999864221   1111111110000 


Q ss_pred             ------cccc--hhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          558 ------EVFD--FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       558 ------~~~d--~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                            +...  .....+   .....++.+++..||+.||++|||+.|+++.|+++...
T Consensus       237 ~~~~~~~~~~~~~~~~~~---~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~  292 (295)
T 3ugc_A          237 IVFHLIELLKNNGRLPRP---DGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDN  292 (295)
T ss_dssp             HHHHHHHHHHTTCCCCCC---TTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHhccCcCCCC---cCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHh
Confidence                  0000  000011   12234577788899999999999999999999998754

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=1e-39  Score=340.73  Aligned_cols=265  Identities=24%  Similarity=0.297  Sum_probs=190.9

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccccchHHHH--HHHHHHhccCCCcccceeEEEEc-----CCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVD--EWLRVIGGLRHSNIVSIRAYCNG-----KDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~--~e~~~l~~l~H~niv~l~~~~~~-----~~~~~lV~Ey~~  410 (640)
                      .+.||+|+||.||+|+. +++.||||++.... ...+.  .++..+..++||||+++++++..     ....++||||++
T Consensus        18 ~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~-~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~   95 (336)
T 3g2f_A           18 LELIGRGRYGAVYKGSL-DERPVAVKVFSFAN-RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYP   95 (336)
T ss_dssp             EEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEEECCCT
T ss_pred             eeecccCCCeEEEEEEE-CCeEEEEEEeeccc-hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEEEecCC
Confidence            56899999999999987 57899999987543 22233  34444556899999999986542     236789999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCC------CCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN------KAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~------~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      +|+|.+++....      .++..+..++.|++.||+|||+..      .++|+||||||+|||++.++.+||+|||+++.
T Consensus        96 ~g~L~~~l~~~~------~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~  169 (336)
T 3g2f_A           96 NGSLXKYLSLHT------SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMR  169 (336)
T ss_dssp             TCBHHHHHHHCC------BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             CCcHHHHHhhcc------cchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccceee
Confidence            999999997543      588999999999999999999651      12699999999999999999999999999976


Q ss_pred             cCC--------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-c--hHHHH
Q 006559          485 FHT--------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-G--IVKWV  547 (640)
Q Consensus       485 ~~~--------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~--~~~~~  547 (640)
                      +..              ...+|..|+|||++.+.........++.++|||||||++|||+||+.|+..... .  ...+.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~  249 (336)
T 3g2f_A          170 LTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQ  249 (336)
T ss_dssp             CSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTH
T ss_pred             cccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhh
Confidence            532              224688999999875433222224566789999999999999999776542111 0  00000


Q ss_pred             HHhhc------------ccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCCCCC
Q 006559          548 QMMGQ------------DESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSIDG  613 (640)
Q Consensus       548 ~~~~~------------~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~~~~  613 (640)
                      .....            .......+.....   .......++.+++.+||+.||++|||+.|+++.|+++......++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~~  324 (336)
T 3g2f_A          250 TEVGNHPTFEDMQVLVSREKQRPKFPEAWK---ENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERNK  324 (336)
T ss_dssp             HHHCSSCCHHHHHHHHTTSCCCCCCCTTCC---CCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC--
T ss_pred             cccCCCchHHHHHhhhcccccCCCCCcccc---cccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhcc
Confidence            00000            0000000000000   112344568888999999999999999999999999987766554

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.4e-39  Score=344.21  Aligned_cols=252  Identities=21%  Similarity=0.327  Sum_probs=198.1

Q ss_pred             hhccccccCcceEEEEEeC--------CCcEEEEEEeccccc---hHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEE
Q 006559          337 SAELLGKGCVGATYKVVLD--------GGDVVVVKRIRERKK---KREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFL  404 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~--------~~~~vavK~l~~~~~---~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  404 (640)
                      ..+.||+|+||.||+|+..        .+..||||+++....   .+.+.+|+++++++ +||||+++++++...+..++
T Consensus        73 i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~l  152 (382)
T 3tt0_A           73 LGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYV  152 (382)
T ss_dssp             EEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             eeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCCceEE
Confidence            3578999999999999852        235799999976532   35678899999999 99999999999999999999


Q ss_pred             EEeccCCCCHHHhhccCCCC-----------CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC
Q 006559          405 VYDYLPHGSLHSLLHGSRGP-----------GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN  473 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~  473 (640)
                      ||||+++|+|.+++......           ....+++..++.++.|++.||+|||+.   +|+||||||+|||++.++.
T Consensus       153 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~  229 (382)
T 3tt0_A          153 IVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNV  229 (382)
T ss_dssp             EEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCC
T ss_pred             EEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCcceEEEcCCCc
Confidence            99999999999999765321           123589999999999999999999954   5999999999999999999


Q ss_pred             eEEccCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchH
Q 006559          474 ACISDIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIV  544 (640)
Q Consensus       474 ~kl~DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~  544 (640)
                      +||+|||+++.....        ..++..|+|||++       ....++.++|||||||++|||+| |+.||.....  .
T Consensus       230 ~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~-------~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~--~  300 (382)
T 3tt0_A          230 MKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEAL-------FDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV--E  300 (382)
T ss_dssp             EEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHH-------HSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--H
T ss_pred             EEEcccCcccccccccccccccCCCCCcceeCHHHh-------cCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCH--H
Confidence            999999999865421        2336689999965       34567789999999999999999 9999975432  2


Q ss_pred             HHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCCC
Q 006559          545 KWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSI  611 (640)
Q Consensus       545 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~~  611 (640)
                      +..+........      .  ...   ....++.+++..||+.||++|||+.||++.|+++......
T Consensus       301 ~~~~~~~~~~~~------~--~~~---~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~  356 (382)
T 3tt0_A          301 ELFKLLKEGHRM------D--KPS---NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSN  356 (382)
T ss_dssp             HHHHHHHTTCCC------C--CCS---SCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHcCCCC------C--CCc---cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHhc
Confidence            222222211100      0  011   1223467788889999999999999999999999866443

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=1e-39  Score=340.00  Aligned_cols=249  Identities=14%  Similarity=0.153  Sum_probs=197.7

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccccchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ..+.||+|+||.||+|+. .+++.||||.+......+.+..|+++++++ +||||+++++++...+..++||||+ +|+|
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~L   91 (330)
T 2izr_A           13 VGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELL-GPSL   91 (330)
T ss_dssp             EEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECC-CCBH
T ss_pred             EEEEeeccCCceEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeC-CCCH
Confidence            357899999999999995 578899999987665556788999999999 9999999999999999999999999 9999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC-----eEEccCCcccccCC--
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN-----ACISDIGVHQLFHT--  487 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~-----~kl~DfGl~~~~~~--  487 (640)
                      .+++....    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.     +||+|||+++.+..  
T Consensus        92 ~~~~~~~~----~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~  164 (330)
T 2izr_A           92 EDLFDLCD----RTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPE  164 (330)
T ss_dssp             HHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTT
T ss_pred             HHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCC
Confidence            99998642    2589999999999999999999954   5999999999999998887     99999999986532  


Q ss_pred             -----------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHHHHHHhhcccc
Q 006559          488 -----------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVKWVQMMGQDES  555 (640)
Q Consensus       488 -----------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~~~~~~~~~~~  555 (640)
                                 ...+|..|+|||++       ....++.++|||||||++|||+||+.||..... ......+.....  
T Consensus       165 ~~~~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~--  235 (330)
T 2izr_A          165 TKKHIPYREHKSLTGTARYMSINTH-------LGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDT--  235 (330)
T ss_dssp             TCCBCCCCCCCCCCSCTTTCCHHHH-------TTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHH--
T ss_pred             CCccccccccCCcCCCccccChHHH-------cCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhh--
Confidence                       23468899999975       345577899999999999999999999985332 222222221110  


Q ss_pred             cccccchhhccChH-HHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 006559          556 AWEVFDFELIMDKE-MEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG  609 (640)
Q Consensus       556 ~~~~~d~~~~~~~~-~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~  609 (640)
                             ....... ......++.+++..||+.||++||++.++.+.|+++..+.
T Consensus       236 -------~~~~~~~~~~~~~p~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~  283 (330)
T 2izr_A          236 -------KRATPIEVLCENFPEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRK  283 (330)
T ss_dssp             -------HHHSCHHHHTTTCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             -------hccCCHHHHhccChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHc
Confidence                   0000000 0011126778888899999999999999999999987553

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=1e-39  Score=345.07  Aligned_cols=249  Identities=23%  Similarity=0.301  Sum_probs=194.7

Q ss_pred             hhccccccCcceEEEEEeC------CCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVLD------GGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~------~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||.||+|++.      ++..||||+++..   .....+.+|+.++++++||||+++++++......++|||
T Consensus        75 ~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e  154 (367)
T 3l9p_A           75 LIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLE  154 (367)
T ss_dssp             EEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             EeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCEEEEE
Confidence            3568999999999999954      3567999999754   234567889999999999999999999999999999999


Q ss_pred             ccCCCCHHHhhccCCC--CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC---CeEEccCCcc
Q 006559          408 YLPHGSLHSLLHGSRG--PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG---NACISDIGVH  482 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~--~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~---~~kl~DfGl~  482 (640)
                      |+++|+|.+++.....  .....+++..++.++.|++.||+|||+.   +|+||||||+|||++.++   .+||+|||++
T Consensus       155 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a  231 (367)
T 3l9p_A          155 LMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMA  231 (367)
T ss_dssp             CCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECCCHHH
T ss_pred             eCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCceEEECCCccc
Confidence            9999999999975432  1223589999999999999999999954   599999999999999555   5999999998


Q ss_pred             cccC--------CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcc
Q 006559          483 QLFH--------TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQD  553 (640)
Q Consensus       483 ~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~  553 (640)
                      +...        ....+|..|+|||++       ....++.++|||||||++|||+| |+.||......  ...+.....
T Consensus       232 ~~~~~~~~~~~~~~~~~t~~y~aPE~~-------~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~--~~~~~i~~~  302 (367)
T 3l9p_A          232 RDIYRAGYYRKGGCAMLPVKWMPPEAF-------MEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ--EVLEFVTSG  302 (367)
T ss_dssp             HHHHHHSSCTTCCGGGSCGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHHHHHHTT
T ss_pred             cccccccccccCCCcCCcccEECHHHh-------cCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcC
Confidence            7542        123347789999964       34567889999999999999998 99999754322  112221111


Q ss_pred             cccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          554 ESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       554 ~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ...        ....   .....+.+++..||+.||++||++.+|++.|+.+...
T Consensus       303 ~~~--------~~~~---~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~  346 (367)
T 3l9p_A          303 GRM--------DPPK---NCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD  346 (367)
T ss_dssp             CCC--------CCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             CCC--------CCCc---cCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhC
Confidence            100        0011   1123466788889999999999999999999998765

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=8.6e-40  Score=330.46  Aligned_cols=243  Identities=27%  Similarity=0.403  Sum_probs=184.9

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEecccc------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERK------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..+.||+|+||.||+|+.. +..||||+++...      ..+.+.+|+++++.++||||+++++++...+..++||||++
T Consensus        11 ~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   89 (271)
T 3dtc_A           11 LEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFAR   89 (271)
T ss_dssp             EEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEEECCT
T ss_pred             eeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEEcCC
Confidence            3568999999999999975 7889999987541      23567889999999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC--------CCCeEEccCCcc
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ--------LGNACISDIGVH  482 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~--------~~~~kl~DfGl~  482 (640)
                      +|+|.+++...      .+++..+..++.|++.||+|||+.+..+|+||||||+|||++.        ++.+||+|||++
T Consensus        90 ~~~L~~~~~~~------~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~  163 (271)
T 3dtc_A           90 GGPLNRVLSGK------RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLA  163 (271)
T ss_dssp             TEEHHHHHTSS------CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-
T ss_pred             CCCHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcc
Confidence            99999999643      4889999999999999999999765445999999999999986        778999999999


Q ss_pred             cccCC----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccc
Q 006559          483 QLFHT----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE  558 (640)
Q Consensus       483 ~~~~~----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  558 (640)
                      +....    ...++..|+|||++       ....++.++||||||+++|||+||+.||.........+......  ..  
T Consensus       164 ~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~--~~--  232 (271)
T 3dtc_A          164 REWHRTTKMSAAGAYAWMAPEVI-------RASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNK--LA--  232 (271)
T ss_dssp             ------------CCGGGSCHHHH-------HHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTSC--CC--
T ss_pred             cccccccccCCCCccceeCHHHh-------ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcCC--CC--
Confidence            76543    23568899999964       34557789999999999999999999997543222211111110  00  


Q ss_pred             ccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       559 ~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                           .....   .....+.+++.+||+.||++|||+.|+++.|+++
T Consensus       233 -----~~~~~---~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          233 -----LPIPS---TCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI  271 (271)
T ss_dssp             -----CCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred             -----CCCCc---ccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence                 00111   1123467788889999999999999999999864

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=3e-39  Score=330.95  Aligned_cols=248  Identities=19%  Similarity=0.261  Sum_probs=193.7

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+. .++..||+|.+...     ...+.+.+|++++++++||||+++++++...+..|+||||+++
T Consensus        16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g   95 (294)
T 4eqm_A           16 VDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEG   95 (294)
T ss_dssp             EEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEEECCCS
T ss_pred             EEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEEeCCCC
Confidence            56899999999999995 46889999998543     2235678899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....     ++++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....    
T Consensus        96 ~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  167 (294)
T 4eqm_A           96 PTLSEYIESHG-----PLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLT  167 (294)
T ss_dssp             CBHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCSSSTTC------
T ss_pred             CCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCCCcccccccccc
Confidence            99999997543     589999999999999999999954   599999999999999999999999999986542    


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         ...+|..|+|||++       ....++.++|||||||++|||+||+.||......... .+.. ....    .....
T Consensus       168 ~~~~~~gt~~y~aPE~~-------~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~-~~~~-~~~~----~~~~~  234 (294)
T 4eqm_A          168 QTNHVLGTVQYFSPEQA-------KGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIA-IKHI-QDSV----PNVTT  234 (294)
T ss_dssp             -------CCSSCCHHHH-------HTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHH-HHHH-SSCC----CCHHH
T ss_pred             ccCccccCccccCHhHh-------cCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHH-HHHh-hccC----CCcch
Confidence               23468899999965       3345678999999999999999999999754321111 1111 1100    00000


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCC-CHHHHHHHHHHhhccC
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRP-NMSIVHRMIEDIRTKG  609 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RP-s~~~v~~~L~~i~~~~  609 (640)
                      ....   .....+.+++.+|++.||++|| +++++.+.|+.+..+.
T Consensus       235 ~~~~---~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~~  277 (294)
T 4eqm_A          235 DVRK---DIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHEN  277 (294)
T ss_dssp             HSCT---TSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSSS
T ss_pred             hccc---CCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhhc
Confidence            0111   1223567788889999999999 8999999999876553

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=2.2e-39  Score=337.06  Aligned_cols=244  Identities=20%  Similarity=0.319  Sum_probs=188.9

Q ss_pred             hhccccccCcceEEEEEeC-CCcE----EEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDV----VVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~----vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      ..+.||+|+||.||+|+.. ++..    ||+|.++..   ...+.+.+|++++++++||||++++++|... ..++|+||
T Consensus        19 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~v~e~   97 (327)
T 3poz_A           19 KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQLITQL   97 (327)
T ss_dssp             EEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESS-SEEEEEEC
T ss_pred             cceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecC-CeEEEEEe
Confidence            3578999999999999954 3443    688887644   3456788999999999999999999999865 48899999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP  488 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~  488 (640)
                      +++|+|.+++.....    .+++..++.++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.....
T Consensus        98 ~~~g~L~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~  170 (327)
T 3poz_A           98 MPFGCLLDYVREHKD----NIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAE  170 (327)
T ss_dssp             CTTCBHHHHHHHSTT----SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTT
T ss_pred             cCCCcHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEccCcceeEccCC
Confidence            999999999986532    589999999999999999999954   5999999999999999999999999999875422


Q ss_pred             --------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccc
Q 006559          489 --------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       489 --------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  559 (640)
                              ..++..|+|||++       ....++.++|||||||++|||+| |+.||..........  ........   
T Consensus       171 ~~~~~~~~~~~t~~y~aPE~~-------~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~--~~~~~~~~---  238 (327)
T 3poz_A          171 EKEYHAEGGKVPIKWMALESI-------LHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISS--ILEKGERL---  238 (327)
T ss_dssp             CC-------CCCGGGSCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHH--HHHTTCCC---
T ss_pred             cccccccCCCccccccChHHh-------ccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHH--HHHcCCCC---
Confidence                    2236689999964       34567889999999999999999 999997543322211  11111000   


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                           ....   ....++.+++.+||+.||++||++.++++.|+++...
T Consensus       239 -----~~~~---~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~  279 (327)
T 3poz_A          239 -----PQPP---ICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD  279 (327)
T ss_dssp             -----CCCT---TBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred             -----CCCc---cCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence                 0011   1223567788899999999999999999999998754

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=1.3e-39  Score=338.25  Aligned_cols=238  Identities=20%  Similarity=0.280  Sum_probs=187.4

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||.||+|+.. +++.||||++....   ..+.+.+|+.+++.++||||+++++++...+..|+||||+++|+
T Consensus        12 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~~~   91 (323)
T 3tki_A           12 VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGE   91 (323)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCTTEE
T ss_pred             eeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEcCCCCc
Confidence            568999999999999965 68899999986542   23567889999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC-------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-------  486 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~-------  486 (640)
                      |.+++....     .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++.+.       
T Consensus        92 L~~~l~~~~-----~~~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  163 (323)
T 3tki_A           92 LFDRIEPDI-----GMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERL  163 (323)
T ss_dssp             GGGGSBTTT-----BCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECC
T ss_pred             HHHHHhhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCccccccchHHEEEeCCCCEEEEEeeccceeccCCcccc
Confidence            999997543     58999999999999999999995   459999999999999999999999999997653       


Q ss_pred             -CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          487 -TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       487 -~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                       ....+|..|+|||++...      ..++.++|||||||++|||+||+.||.........+.........    ..+   
T Consensus       164 ~~~~~gt~~y~aPE~~~~~------~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~----~~~---  230 (323)
T 3tki_A          164 LNKMCGTLPYVAPELLKRR------EFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTY----LNP---  230 (323)
T ss_dssp             BCSCCSCGGGSCHHHHHCS------SBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTT----STT---
T ss_pred             cCCCccCcCccCcHHhccC------CCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhccccc----CCc---
Confidence             234568899999975322      223568999999999999999999997543332222221111100    000   


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                          .......+.+++.+||+.||++|||+.|+++
T Consensus       231 ----~~~~~~~~~~li~~~L~~dP~~R~t~~eil~  261 (323)
T 3tki_A          231 ----WKKIDSAPLALLHKILVENPSARITIPDIKK  261 (323)
T ss_dssp             ----GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             ----cccCCHHHHHHHHHHccCChhhCcCHHHHhh
Confidence                0112234567888899999999999999865

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=3.1e-39  Score=333.58  Aligned_cols=249  Identities=20%  Similarity=0.308  Sum_probs=188.8

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||+||+|+..+++.||||++....    ..+.+.+|++++++++||||+++++++...+..++||||++ |+
T Consensus        26 ~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~-~~  104 (311)
T 3niz_A           26 LEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEFME-KD  104 (311)
T ss_dssp             EEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEECCS-EE
T ss_pred             hhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEcCCC-CC
Confidence            56899999999999999889999999997542    23567889999999999999999999999999999999998 58


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------  487 (640)
                      |.+++....    ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....      
T Consensus       105 l~~~~~~~~----~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~  177 (311)
T 3niz_A          105 LKKVLDENK----TGLQDSQIKIYLYQLLRGVAHCHQ---HRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYT  177 (311)
T ss_dssp             HHHHHHTCT----TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC---
T ss_pred             HHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCchHhEEECCCCCEEEccCcCceecCCCccccc
Confidence            888887543    248899999999999999999995   4599999999999999999999999999987642      


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chH-HHHHHhhcccc-cccccch-h
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIV-KWVQMMGQDES-AWEVFDF-E  563 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~-~~~~~~~~~~~-~~~~~d~-~  563 (640)
                      ...+|..|+|||++.+      ...++.++|||||||++|||+||+.||..... ... ........... .+..... .
T Consensus       178 ~~~~t~~y~aPE~~~~------~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  251 (311)
T 3niz_A          178 HEVVTLWYRAPDVLMG------SKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELP  251 (311)
T ss_dssp             CCCCCCTTCCHHHHTT------CCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSH
T ss_pred             CCcccCCcCCHHHhcC------CCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccc
Confidence            2345889999997532      24567899999999999999999999974322 222 22222211110 0000000 0


Q ss_pred             --------hccC----hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          564 --------LIMD----KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       564 --------~~~~----~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                              ....    ........++.+++.+||+.||++|||+.|+++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  300 (311)
T 3niz_A          252 LWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN  300 (311)
T ss_dssp             HHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             hhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence                    0000    000112245678888999999999999999875

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=2.6e-39  Score=331.52  Aligned_cols=252  Identities=13%  Similarity=0.141  Sum_probs=197.7

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccccchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ..+.||+|+||.||+|+. .+++.||||.+......+.+.+|+++++++ +|+|++++++++......++||||+ +|+|
T Consensus        14 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L   92 (298)
T 1csn_A           14 VGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPSL   92 (298)
T ss_dssp             EEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-CCBH
T ss_pred             EEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEec-CCCH
Confidence            356799999999999995 678899999987666666788899999998 7999999999999999999999999 9999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC-----eEEccCCcccccCC--
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN-----ACISDIGVHQLFHT--  487 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~-----~kl~DfGl~~~~~~--  487 (640)
                      .+++....    .++++..+..++.|++.||+|||+   .+|+||||||+|||++.++.     +||+|||+++....  
T Consensus        93 ~~~l~~~~----~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~  165 (298)
T 1csn_A           93 EDLLDLCG----RKFSVKTVAMAAKQMLARVQSIHE---KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPV  165 (298)
T ss_dssp             HHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTT
T ss_pred             HHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEeccCCCCCCCeEEEEECcccccccccc
Confidence            99998643    248999999999999999999994   56999999999999987776     99999999986542  


Q ss_pred             -----------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHhhcccc
Q 006559          488 -----------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQDES  555 (640)
Q Consensus       488 -----------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~~~~~~  555 (640)
                                 ...+|..|+|||++       ....++.++|||||||++|||+||+.||...... .............
T Consensus       166 ~~~~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~  238 (298)
T 1csn_A          166 TKQHIPYREKKNLSGTARYMSINTH-------LGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQ  238 (298)
T ss_dssp             TCCBCCCCCCCCCCSCTTTCCHHHH-------TTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHH
T ss_pred             ccccccccCccCCCCCcccCCchhh-------cCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhcc
Confidence                       22457899999965       3345678999999999999999999999753221 1111111110000


Q ss_pred             cccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 006559          556 AWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGS  610 (640)
Q Consensus       556 ~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~  610 (640)
                      .       ............++.+++..||+.||++||++.+|++.|+++..+..
T Consensus       239 ~-------~~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~  286 (298)
T 1csn_A          239 S-------TPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLN  286 (298)
T ss_dssp             H-------SCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             C-------ccHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcC
Confidence            0       00000001123457778888999999999999999999999886543

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=4.6e-39  Score=324.22  Aligned_cols=244  Identities=23%  Similarity=0.360  Sum_probs=198.0

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHH
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~  416 (640)
                      .+.||+|+||.||+|+..++..||+|.+... ...+.+.+|++++++++||||+++++++...+..++||||+++|+|.+
T Consensus        13 ~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~   92 (267)
T 3t9t_A           13 VQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSD   92 (267)
T ss_dssp             EEEEEEETTEEEEEEEETTTEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCTTCBHHH
T ss_pred             eeEecCCCceeEEEEEecCCCeEEEEEccccCCCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCCCCcHHH
Confidence            5679999999999999988889999999866 345678899999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-------Cc
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-------PF  489 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-------~~  489 (640)
                      ++....    ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....       ..
T Consensus        93 ~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~  165 (267)
T 3t9t_A           93 YLRTQR----GLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGT  165 (267)
T ss_dssp             HHHHTT----TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTST
T ss_pred             HHhhCc----ccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEcccccccccccccccccccc
Confidence            997643    2578999999999999999999954   599999999999999999999999999886532       12


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      .++..|+|||++       ....++.++||||||+++|||+| |+.||......  ...........   ..     .+.
T Consensus       166 ~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~i~~~~~---~~-----~~~  228 (267)
T 3t9t_A          166 KFPVKWASPEVF-------SFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS--EVVEDISTGFR---LY-----KPR  228 (267)
T ss_dssp             TCCGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHTTCC---CC-----CCT
T ss_pred             cccccccChhhh-------cCCCccchhchhhhHHHHHHHhccCCCCCCCCCHH--HHHHHHhcCCc---CC-----CCc
Confidence            345679999965       33456789999999999999999 89999754321  11221111100   00     011


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      .   ....+.+++.+||+.||++||++.++++.|+++...
T Consensus       229 ~---~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (267)
T 3t9t_A          229 L---ASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES  265 (267)
T ss_dssp             T---SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             c---CcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence            1   123466788889999999999999999999998764

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=1e-39  Score=341.67  Aligned_cols=251  Identities=22%  Similarity=0.370  Sum_probs=196.2

Q ss_pred             hhccccccCcceEEEEEeCC------CcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVLDG------GDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~------~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||.||+|+..+      +..||||.++...   ..+.+.+|++++++++||||+++++++...+..++|||
T Consensus        51 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  130 (343)
T 1luf_A           51 YVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFE  130 (343)
T ss_dssp             EEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             eeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCceEEEEe
Confidence            35679999999999999743      4789999997652   24568899999999999999999999999999999999


Q ss_pred             ccCCCCHHHhhccCCCC-------------------CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE
Q 006559          408 YLPHGSLHSLLHGSRGP-------------------GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV  468 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~-------------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl  468 (640)
                      |+++|+|.+++......                   ....+++..++.++.|++.||+|||+.   +|+||||||+|||+
T Consensus       131 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~  207 (343)
T 1luf_A          131 YMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVHRDLATRNCLV  207 (343)
T ss_dssp             CCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred             cCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEE
Confidence            99999999999764211                   114689999999999999999999954   59999999999999


Q ss_pred             CCCCCeEEccCCcccccCC--------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 006559          469 DQLGNACISDIGVHQLFHT--------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDG  539 (640)
Q Consensus       469 ~~~~~~kl~DfGl~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~  539 (640)
                      +.++.+||+|||+++....        ...++..|+|||++       ....++.++|||||||++|||+| |+.||...
T Consensus       208 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~-------~~~~~~~~~Di~slG~il~el~t~g~~p~~~~  280 (343)
T 1luf_A          208 GENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESI-------FYNRYTTESDVWAYGVVLWEIFSYGLQPYYGM  280 (343)
T ss_dssp             CGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred             CCCCeEEEeecCCCcccccCccccccCCCcccceecChhhh-------ccCCcCcccccHHHHHHHHHHHhcCCCcCCCC
Confidence            9999999999999876432        22346789999964       34457889999999999999999 99999754


Q ss_pred             CcchHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 006559          540 ELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGS  610 (640)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~  610 (640)
                      ...  ............        ..+.   ....++.+++..||+.||++||++.++++.|+++..+..
T Consensus       281 ~~~--~~~~~~~~~~~~--------~~~~---~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~  338 (343)
T 1luf_A          281 AHE--EVIYYVRDGNIL--------ACPE---NCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERAE  338 (343)
T ss_dssp             CHH--HHHHHHHTTCCC--------CCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC---
T ss_pred             ChH--HHHHHHhCCCcC--------CCCC---CCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhh
Confidence            321  122221111100        0111   122356778888999999999999999999999886543

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=1.8e-39  Score=327.71  Aligned_cols=249  Identities=23%  Similarity=0.342  Sum_probs=194.3

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcC--CeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGK--DELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+.+ +..||||.++..    ...+.+.+|++++++++||||+++++++...  +..++||||+++
T Consensus        15 ~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~   93 (271)
T 3kmu_A           15 LTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPY   93 (271)
T ss_dssp             EEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEECCTT
T ss_pred             HHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeecccCC
Confidence            568999999999999986 788999998754    2245688899999999999999999999887  788999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-Ccc
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-PFF  490 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-~~~  490 (640)
                      |+|.+++....   ...+++..+..++.|++.||+|||+.+ ++|+||||||+||+++.++.++|+|||++..... ...
T Consensus        94 ~~L~~~l~~~~---~~~~~~~~~~~i~~qi~~~l~~lH~~~-~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~~~~~  169 (271)
T 3kmu_A           94 GSLYNVLHEGT---NFVVDQSQAVKFALDMARGMAFLHTLE-PLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGRM  169 (271)
T ss_dssp             CBHHHHHHSCS---SCCCCHHHHHHHHHHHHHHHHHHTTSS-SCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSCTTCB
T ss_pred             CcHHHHHhhcc---cCCCCHHHHHHHHHHHHHHHHHHhcCC-CceecCCCccceEEEcCCcceeEEeccceeeecccCcc
Confidence            99999998643   225899999999999999999999532 3399999999999999999999998888765433 345


Q ss_pred             ccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChHH
Q 006559          491 INDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEM  570 (640)
Q Consensus       491 ~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  570 (640)
                      +|..|+|||++.....    ..++.++|||||||++|||+||+.||.......  ...........     +.  .+...
T Consensus       170 ~t~~y~aPE~~~~~~~----~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~--~~~~~~~~~~~-----~~--~~~~~  236 (271)
T 3kmu_A          170 YAPAWVAPEALQKKPE----DTNRRSADMWSFAVLLWELVTREVPFADLSNME--IGMKVALEGLR-----PT--IPPGI  236 (271)
T ss_dssp             SCGGGSCHHHHHSCGG----GSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHH--HHHHHHHSCCC-----CC--CCTTC
T ss_pred             CCccccChhhhccCCC----CCCCchhhHHHHHHHHHHHHhCCCCccccChHH--HHHHHHhcCCC-----CC--CCCCC
Confidence            6889999997643211    223447999999999999999999997533211  11111111000     00  11111


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          571 EEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       571 ~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                         ..++.+++..||+.||++|||+.++++.|+++..
T Consensus       237 ---~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~  270 (271)
T 3kmu_A          237 ---SPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD  270 (271)
T ss_dssp             ---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred             ---CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence               2346677888999999999999999999999875

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=3.6e-39  Score=336.31  Aligned_cols=234  Identities=21%  Similarity=0.301  Sum_probs=188.2

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+.. +|+.||+|.++..     .....+.+|+++++.++||||+++++++...+..|+||||+++
T Consensus        10 ~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~E~~~g   89 (337)
T 1o6l_A           10 LKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANG   89 (337)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            568999999999999965 6889999999754     2345678899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC-----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----  486 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~-----  486 (640)
                      |+|.+++....     .+++.....++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++...     
T Consensus        90 g~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~  161 (337)
T 1o6l_A           90 GELFFHLSRER-----VFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT  161 (337)
T ss_dssp             CBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCC
T ss_pred             CcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeeccchhhcccCCCc
Confidence            99999997543     588999999999999999999954   59999999999999999999999999987632     


Q ss_pred             -CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          487 -TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       487 -~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                       ....+|..|+|||++       ....++.++|||||||++|||++|+.||......  ...+......         ..
T Consensus       162 ~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~i~~~~---------~~  223 (337)
T 1o6l_A          162 MKTFCGTPEYLAPEVL-------EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE--RLFELILMEE---------IR  223 (337)
T ss_dssp             BCCCEECGGGCCGGGG-------SSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCC---------CC
T ss_pred             ccccccChhhCChhhh-------cCCCCCchhhcccchhHHHHHhcCCCCCCCCCHH--HHHHHHHcCC---------CC
Confidence             234568899999975       3345778999999999999999999999754321  1111111110         11


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRP-----NMSIVHR  600 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RP-----s~~~v~~  600 (640)
                      .+...+   .++.+++.+||+.||++||     ++.|+++
T Consensus       224 ~p~~~s---~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~  260 (337)
T 1o6l_A          224 FPRTLS---PEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             CCTTSC---HHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             CCCCCC---HHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence            111122   2456677789999999999     8888864

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=7.6e-40  Score=355.68  Aligned_cols=245  Identities=23%  Similarity=0.389  Sum_probs=194.1

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ..+.||+|+||.||+|+..++..||||.++.. ...+++.+|++++++++||||+++++++.. +..++||||+++|+|.
T Consensus       188 ~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~~~~gsL~  266 (452)
T 1fmk_A          188 LEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLL  266 (452)
T ss_dssp             EEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTTCBHH
T ss_pred             eeeeecCCCCeEEEEEEECCCceEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehhhcCCCHH
Confidence            35689999999999999988888999999865 345778999999999999999999999876 6789999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-------
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-------  488 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-------  488 (640)
                      +++....+   ..+++..++.++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++.....       
T Consensus       267 ~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~  340 (452)
T 1fmk_A          267 DFLKGETG---KYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQG  340 (452)
T ss_dssp             HHHSHHHH---TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCTTC------------
T ss_pred             HHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChhhEEECCCCCEEECCCccceecCCCceecccC
Confidence            99974321   248899999999999999999995   45999999999999999999999999999875432       


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      ...+..|+|||++       ....++.++|||||||++|||+| |+.||.....  .+..........        ...+
T Consensus       341 ~~~~~~y~aPE~~-------~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~--~~~~~~i~~~~~--------~~~~  403 (452)
T 1fmk_A          341 AKFPIKWTAPEAA-------LYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN--REVLDQVERGYR--------MPCP  403 (452)
T ss_dssp             --CCGGGSCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH--HHHHHHHHTTCC--------CCCC
T ss_pred             CcccccccCHhHH-------hcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHcCCC--------CCCC
Confidence            1235679999964       34567889999999999999999 9999975322  111222111100        0111


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      .   .....+.+++.+||+.||++|||+.++++.|+++...
T Consensus       404 ~---~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~  441 (452)
T 1fmk_A          404 P---ECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS  441 (452)
T ss_dssp             T---TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSC
T ss_pred             C---CCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhcc
Confidence            1   2233567788899999999999999999999998754

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=2.3e-39  Score=340.05  Aligned_cols=240  Identities=17%  Similarity=0.207  Sum_probs=177.8

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ..+.||+|+||.||+|+.. +++.||||.++.....+.+.+|++++++++||||+++++++...+..++||||+++|+|.
T Consensus        57 ~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~  136 (349)
T 2w4o_A           57 VESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGELF  136 (349)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEC----------CHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHH
T ss_pred             EeeEEeeCCCEEEEEEEECCCCcEEEEEEeccchhHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEeCCCCCHH
Confidence            3568999999999999976 478899999987666677888999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC---CCCeEEccCCcccccCC-----
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ---LGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~---~~~~kl~DfGl~~~~~~-----  487 (640)
                      +++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||++.   ++.+||+|||+++....     
T Consensus       137 ~~l~~~~-----~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~  208 (349)
T 2w4o_A          137 DRIVEKG-----YYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMK  208 (349)
T ss_dssp             HHHTTCS-----SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECCCC------------
T ss_pred             HHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEccCccccccCcccccc
Confidence            9997543     588999999999999999999954   5999999999999975   88999999999886543     


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      ...+|..|+|||++.       ...++.++|||||||++|||+||+.||.........+........   ....      
T Consensus       209 ~~~gt~~y~aPE~~~-------~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~---~~~~------  272 (349)
T 2w4o_A          209 TVCGTPGYCAPEILR-------GCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEY---YFIS------  272 (349)
T ss_dssp             ----CGGGSCHHHHT-------TCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCC---CCCT------
T ss_pred             cccCCCCccCHHHhc-------CCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCC---ccCC------
Confidence            234688999999753       345778999999999999999999999754332211111111110   0000      


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      +...+...++.+++.+||+.||++|||+.++++
T Consensus       273 ~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  305 (349)
T 2w4o_A          273 PWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ  305 (349)
T ss_dssp             TTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             chhhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            001112235667888899999999999999875

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=4e-39  Score=339.07  Aligned_cols=239  Identities=18%  Similarity=0.254  Sum_probs=190.2

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc--------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK--------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~--------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||.||+|+.. +|..||||.+....        ..+.+.+|+.++++++||||+++++++...+..|+|||
T Consensus        16 ~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~e   95 (361)
T 2yab_A           16 IGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDVVLILE   95 (361)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             EeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEEEEEE
Confidence            3578999999999999965 58899999997542        24678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC----CeEEccCCccc
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG----NACISDIGVHQ  483 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~----~~kl~DfGl~~  483 (640)
                      |+++|+|.+++....     .+++..+..++.||+.||+|||+.   +|+||||||+|||++.++    .+||+|||+++
T Consensus        96 ~~~gg~L~~~l~~~~-----~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~  167 (361)
T 2yab_A           96 LVSGGELFDFLAQKE-----SLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAH  167 (361)
T ss_dssp             CCCSCBHHHHHTTCS-----CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCSSCE
T ss_pred             cCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCccCEEEEecCCce
Confidence            999999999997543     589999999999999999999954   599999999999998877    79999999998


Q ss_pred             ccCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccc
Q 006559          484 LFHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE  558 (640)
Q Consensus       484 ~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  558 (640)
                      ....     ...+|+.|+|||++       ....++.++|||||||++|||++|+.||.....  ............   
T Consensus       168 ~~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~--~~~~~~i~~~~~---  235 (361)
T 2yab_A          168 EIEDGVEFKNIFGTPEFVAPEIV-------NYEPLGLEADMWSIGVITYILLSGASPFLGDTK--QETLANITAVSY---  235 (361)
T ss_dssp             ECCTTCCCCCCCSCGGGCCHHHH-------TTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH--HHHHHHHHTTCC---
T ss_pred             EcCCCCccccCCCCccEECchHH-------cCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhcCC---
Confidence            7643     24568899999975       334577899999999999999999999975432  111111111100   


Q ss_pred             ccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       559 ~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .++...     .......+.+++..||..||++|||+.|+++
T Consensus       236 ~~~~~~-----~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~  272 (361)
T 2yab_A          236 DFDEEF-----FSQTSELAKDFIRKLLVKETRKRLTIQEALR  272 (361)
T ss_dssp             CCCHHH-----HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             CCCchh-----ccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            011111     1112234667788899999999999999873

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.7e-38  Score=331.43  Aligned_cols=259  Identities=24%  Similarity=0.313  Sum_probs=189.2

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHh--ccCCCcccceeEEEEcC----CeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIG--GLRHSNIVSIRAYCNGK----DELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~--~l~H~niv~l~~~~~~~----~~~~lV~Ey~~  410 (640)
                      ..+.||+|+||.||+|+.. +..||||++..... .....|.+++.  .++||||+++++++...    ...++||||++
T Consensus        41 ~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~-~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~  118 (337)
T 3mdy_A           41 MVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTEE-ASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHE  118 (337)
T ss_dssp             EEEEEEEETTEEEEEEEET-TEEEEEEEEEGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEEEECCCT
T ss_pred             EEeEeecCCCeEEEEEEEC-CceEEEEEEecccc-chhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEEEEeccC
Confidence            3578999999999999986 78999999865432 23333444444  45999999999999876    68999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCC-----CCCceecCCCCCCeEECCCCCeEEccCCccccc
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN-----KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF  485 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~  485 (640)
                      +|+|.++++..      .+++..+..++.|++.||+|||+..     .++|+||||||+|||++.++.+||+|||+++..
T Consensus       119 ~g~L~~~l~~~------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~  192 (337)
T 3mdy_A          119 NGSLYDYLKST------TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKF  192 (337)
T ss_dssp             TCBHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEC
T ss_pred             CCcHHHHhhcc------CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCceee
Confidence            99999999754      4889999999999999999999641     226999999999999999999999999998765


Q ss_pred             CC----------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhC----------CCCCCCCCc---c
Q 006559          486 HT----------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG----------KMAKGDGEL---G  542 (640)
Q Consensus       486 ~~----------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg----------~~p~~~~~~---~  542 (640)
                      ..          ...+|..|+|||++....... ....+.++|||||||++|||+||          +.||.....   .
T Consensus       193 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~-~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~  271 (337)
T 3mdy_A          193 ISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRN-HFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPS  271 (337)
T ss_dssp             C---------CCSSCSCGGGCCHHHHTTCCCTT-CTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred             ccccccccCCCCCCccCcceeChhhcccccCCc-cccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCc
Confidence            32          235688999999764332110 01112359999999999999999          555543111   1


Q ss_pred             hHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 006559          543 IVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG  609 (640)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~  609 (640)
                      ...+....... .    ..+.........+...++.+++..||+.||++|||+.+|++.|+++....
T Consensus       272 ~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~  333 (337)
T 3mdy_A          272 YEDMREIVCIK-K----LRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQ  333 (337)
T ss_dssp             HHHHHHHHTTS-C----CCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred             hhhhHHHHhhh-c----cCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhc
Confidence            11111111110 0    01111111112245667888999999999999999999999999998654

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=1e-39  Score=343.94  Aligned_cols=249  Identities=21%  Similarity=0.311  Sum_probs=193.3

Q ss_pred             hhccccccCcceEEEEEe------CCCcEEEEEEeccccc---hHHHHHHHHHHhcc-CCCcccceeEEEEcCC-eEEEE
Q 006559          337 SAELLGKGCVGATYKVVL------DGGDVVVVKRIRERKK---KREVDEWLRVIGGL-RHSNIVSIRAYCNGKD-ELFLV  405 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~------~~~~~vavK~l~~~~~---~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~-~~~lV  405 (640)
                      ..+.||+|+||.||+|++      .+++.||||+++....   .+.+.+|++++.++ +||||+++++++...+ ..++|
T Consensus        26 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~~~~iv  105 (359)
T 3vhe_A           26 LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVI  105 (359)
T ss_dssp             EEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEE
T ss_pred             eceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCCCceEEE
Confidence            357899999999999974      2357899999986532   35688899999999 7899999999998765 49999


Q ss_pred             EeccCCCCHHHhhccCCCCC------------------------------------------------------------
Q 006559          406 YDYLPHGSLHSLLHGSRGPG------------------------------------------------------------  425 (640)
Q Consensus       406 ~Ey~~~gsL~~~l~~~~~~~------------------------------------------------------------  425 (640)
                      |||+++|+|.++++......                                                            
T Consensus       106 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (359)
T 3vhe_A          106 VEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDL  185 (359)
T ss_dssp             EECCTTEEHHHHHHTTTTSBCSCC------------------------------------------------------CT
T ss_pred             EEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhhcccccch
Confidence            99999999999997653210                                                            


Q ss_pred             -CCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--------Ccccccccc
Q 006559          426 -RMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--------PFFINDAYN  496 (640)
Q Consensus       426 -~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--------~~~~~~~y~  496 (640)
                       ...+++..++.++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....        ...+|..|+
T Consensus       186 ~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~  262 (359)
T 3vhe_A          186 YKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWM  262 (359)
T ss_dssp             TTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGC
T ss_pred             hccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccCCCceeE
Confidence             11288999999999999999999954   599999999999999999999999999986532        123467899


Q ss_pred             CCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHHHHH
Q 006559          497 APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMR  575 (640)
Q Consensus       497 aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  575 (640)
                      |||++       ....++.++|||||||++|||+| |+.||............. .....        ...+..   ...
T Consensus       263 aPE~~-------~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~-~~~~~--------~~~~~~---~~~  323 (359)
T 3vhe_A          263 APETI-------FDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL-KEGTR--------MRAPDY---TTP  323 (359)
T ss_dssp             CHHHH-------HHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHH-HHTCC--------CCCCTT---CCH
T ss_pred             Chhhh-------cCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHH-HcCCC--------CCCCCC---CCH
Confidence            99964       34567889999999999999999 999997543322111111 11000        000111   123


Q ss_pred             HHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          576 ALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       576 ~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                      ++.+++..||+.||++|||+.|+++.|+++..
T Consensus       324 ~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~  355 (359)
T 3vhe_A          324 EMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  355 (359)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCChhhCCCHHHHHHHHHHHHH
Confidence            46777888999999999999999999999864

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.3e-39  Score=334.79  Aligned_cols=239  Identities=18%  Similarity=0.263  Sum_probs=190.4

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      .+.||+|+||.||+|+.. ++..||+|.+... .....+.+|+++++.++||||+++++++...+..++||||+++|+|.
T Consensus        10 ~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~   89 (321)
T 1tki_A           10 AEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDIF   89 (321)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBHH
T ss_pred             eeEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEeCCCCCHH
Confidence            567999999999999965 5788999998755 33456788999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC--CCCeEEccCCcccccCCC-----
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ--LGNACISDIGVHQLFHTP-----  488 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~--~~~~kl~DfGl~~~~~~~-----  488 (640)
                      +++....    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.  ++.+||+|||+++.....     
T Consensus        90 ~~l~~~~----~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~  162 (321)
T 1tki_A           90 ERINTSA----FELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRL  162 (321)
T ss_dssp             HHHTSSS----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEE
T ss_pred             HHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCcccc
Confidence            9997543    2588999999999999999999954   5999999999999997  789999999999876432     


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..+++.|+|||++.       ...++.++|||||||++|||++|+.||.....  .............   ++..     
T Consensus       163 ~~gt~~y~aPE~~~-------~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~i~~~~~~---~~~~-----  225 (321)
T 1tki_A          163 LFTAPEYYAPEVHQ-------HDVVSTATDMWSLGTLVYVLLSGINPFLAETN--QQIIENIMNAEYT---FDEE-----  225 (321)
T ss_dssp             EESCGGGSCHHHHT-------TCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH--HHHHHHHHHTCCC---CCHH-----
T ss_pred             ccCChhhcCcHHhc-------CCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH--HHHHHHHHcCCCC---CChh-----
Confidence            34588999999753       33467899999999999999999999975432  1222221111100   0000     


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .......++.+++.+||..||++|||+.|+++
T Consensus       226 ~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~  257 (321)
T 1tki_A          226 AFKEISIEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             HHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             hhccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            11122345677888999999999999999976

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=4.5e-39  Score=334.76  Aligned_cols=236  Identities=18%  Similarity=0.263  Sum_probs=184.7

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCC-------------
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKD-------------  400 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~-------------  400 (640)
                      .+.||+|+||.||+|+.. +++.||||+++..   ...+.+.+|++++++++||||++++++|.+..             
T Consensus        11 ~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~   90 (332)
T 3qd2_B           11 IQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEMDEIWL   90 (332)
T ss_dssp             EEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHHHHC---
T ss_pred             eeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhhhhhhhh
Confidence            568999999999999975 7899999998743   23467889999999999999999999986543             


Q ss_pred             --------------------------------------------eEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHH
Q 006559          401 --------------------------------------------ELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLK  436 (640)
Q Consensus       401 --------------------------------------------~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~  436 (640)
                                                                  ..++||||+++|+|.+++.....  ....++..++.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~--~~~~~~~~~~~  168 (332)
T 3qd2_B           91 KDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCS--LEDREHGVCLH  168 (332)
T ss_dssp             -----------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCS--GGGSCHHHHHH
T ss_pred             ccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccC--ccchhhHHHHH
Confidence                                                        38999999999999999986542  23467778899


Q ss_pred             HHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC------------------ccccccccCC
Q 006559          437 LASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP------------------FFINDAYNAP  498 (640)
Q Consensus       437 i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~------------------~~~~~~y~aP  498 (640)
                      ++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++.....                  ..+|..|+||
T Consensus       169 i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  245 (332)
T 3qd2_B          169 IFIQIAEAVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSP  245 (332)
T ss_dssp             HHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGGSCH
T ss_pred             HHHHHHHHHHHHHh---CCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCccCh
Confidence            99999999999995   45999999999999999999999999998875432                  2468899999


Q ss_pred             ccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHHHHHHHH
Q 006559          499 ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALL  578 (640)
Q Consensus       499 E~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~  578 (640)
                      |++       ....++.++|||||||++|||++|..|+..    ..........           ...+........++.
T Consensus       246 E~~-------~~~~~~~~~Di~slG~il~el~~~~~~~~~----~~~~~~~~~~-----------~~~~~~~~~~~~~~~  303 (332)
T 3qd2_B          246 EQI-------HGNNYSHKVDIFSLGLILFELLYSFSTQME----RVRIITDVRN-----------LKFPLLFTQKYPQEH  303 (332)
T ss_dssp             HHH-------HCCCCCTHHHHHHHHHHHHHHHSCCCCHHH----HHHHHHHHHT-----------TCCCHHHHHHCHHHH
T ss_pred             HHh-------cCCCCcchhhHHHHHHHHHHHHHcCCChhH----HHHHHHHhhc-----------cCCCcccccCChhHH
Confidence            965       344678899999999999999998776521    1111111110           011122233445567


Q ss_pred             HHHHHccCCCCCCCCCHHHHHH
Q 006559          579 QVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       579 ~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      +++..||+.||++|||+.|+++
T Consensus       304 ~li~~~l~~~p~~Rps~~~~l~  325 (332)
T 3qd2_B          304 MMVQDMLSPSPTERPEATDIIE  325 (332)
T ss_dssp             HHHHHHHCSSGGGSCCHHHHHH
T ss_pred             HHHHHHccCCCCcCCCHHHHhh
Confidence            8889999999999999999875

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=7.1e-39  Score=333.11  Aligned_cols=239  Identities=18%  Similarity=0.284  Sum_probs=190.1

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc--------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK--------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~--------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||.||+|+.. ++..||||.+....        ..+.+.+|+.++++++||||+++++++...+..++|||
T Consensus        15 ~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   94 (326)
T 2y0a_A           15 TGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILE   94 (326)
T ss_dssp             EEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             eceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEE
Confidence            4578999999999999965 58899999987542        24678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC----CeEEccCCccc
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG----NACISDIGVHQ  483 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~----~~kl~DfGl~~  483 (640)
                      |+++|+|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++    .+||+|||+++
T Consensus        95 ~~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~  166 (326)
T 2y0a_A           95 LVAGGELFDFLAEKE-----SLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAH  166 (326)
T ss_dssp             CCCSCBHHHHHTTSS-----CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred             cCCCCCHHHHHHhcC-----CcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCCEEEEECCCCe
Confidence            999999999997543     589999999999999999999954   599999999999999887    89999999998


Q ss_pred             ccCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccc
Q 006559          484 LFHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE  558 (640)
Q Consensus       484 ~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  558 (640)
                      ....     ...+|..|+|||++       ....++.++|||||||++|||+||+.||......  ..........  ..
T Consensus       167 ~~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~~~~~~--~~  235 (326)
T 2y0a_A          167 KIDFGNEFKNIFGTPEFVAPEIV-------NYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ--ETLANVSAVN--YE  235 (326)
T ss_dssp             ECCTTSCCCCCCSCTTTCCHHHH-------TTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH--HHHHHHHHTC--CC
T ss_pred             ECCCCCccccccCCcCcCCceee-------cCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHH--HHHHHHHhcC--CC
Confidence            7642     23568899999975       3345778999999999999999999999753321  1111111100  00


Q ss_pred             ccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       559 ~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       ....     ........+.+++..||+.||++|||+.++++
T Consensus       236 -~~~~-----~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  271 (326)
T 2y0a_A          236 -FEDE-----YFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ  271 (326)
T ss_dssp             -CCHH-----HHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             -cCcc-----ccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence             0000     01112234667888899999999999999975

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=2.4e-39  Score=336.03  Aligned_cols=254  Identities=20%  Similarity=0.315  Sum_probs=184.9

Q ss_pred             hhccccccCcceEEEEEeCCCc----EEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeE------
Q 006559          337 SAELLGKGCVGATYKVVLDGGD----VVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDEL------  402 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~----~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~------  402 (640)
                      ..+.||+|+||.||+|+.....    .||||.++..    ...+.+.+|++++++++||||+++++++......      
T Consensus        27 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~  106 (323)
T 3qup_A           27 LGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIP  106 (323)
T ss_dssp             EEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-------CE
T ss_pred             EeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccccCCCcc
Confidence            3578999999999999965432    7999998754    2346688999999999999999999999876654      


Q ss_pred             EEEEeccCCCCHHHhhccCCC-CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCc
Q 006559          403 FLVYDYLPHGSLHSLLHGSRG-PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV  481 (640)
Q Consensus       403 ~lV~Ey~~~gsL~~~l~~~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl  481 (640)
                      ++||||+++|+|.+++..... .....+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+
T Consensus       107 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~~~~kl~Dfg~  183 (323)
T 3qup_A          107 MVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMTVCVADFGL  183 (323)
T ss_dssp             EEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC
T ss_pred             EEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCCCCEEEeeccc
Confidence            999999999999999864321 1223589999999999999999999954   599999999999999999999999999


Q ss_pred             ccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhc
Q 006559          482 HQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQ  552 (640)
Q Consensus       482 ~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~  552 (640)
                      ++.....        ...+..|+|||++       ....++.++|||||||++|||+| |+.||.......  .......
T Consensus       184 a~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~--~~~~~~~  254 (323)
T 3qup_A          184 SRKIYSGDYYRQGCASKLPVKWLALESL-------ADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAE--IYNYLIG  254 (323)
T ss_dssp             -----------------CCGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHHHHHT
T ss_pred             cccccccccccccccccCcccccCchhh-------cCCCCCCccchhhHHHHHHHHHhCCCCCccccChHH--HHHHHhc
Confidence            9765321        2235679999964       34567789999999999999999 899997533221  1111111


Q ss_pred             ccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCCCCC
Q 006559          553 DESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSIDG  613 (640)
Q Consensus       553 ~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~~~~  613 (640)
                      ...        .....   ....++.+++.+||+.||++|||+.++++.|+++.......+
T Consensus       255 ~~~--------~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~~~~  304 (323)
T 3qup_A          255 GNR--------LKQPP---ECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLSVLS  304 (323)
T ss_dssp             TCC--------CCCCT---TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-----
T ss_pred             CCC--------CCCCC---ccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhhhcC
Confidence            100        00111   122356778888999999999999999999999987765544

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=6e-39  Score=331.42  Aligned_cols=249  Identities=23%  Similarity=0.340  Sum_probs=195.5

Q ss_pred             hhccccccCcceEEEEEe------CCCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVL------DGGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~------~~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||.||+|+.      .++..||||.++...   ..+.+.+|++++++++||||+++++++...+..++|||
T Consensus        27 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  106 (314)
T 2ivs_A           27 LGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVE  106 (314)
T ss_dssp             EEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             eeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCceEEEEe
Confidence            357899999999999985      345789999997653   23567889999999999999999999999999999999


Q ss_pred             ccCCCCHHHhhccCCCC-------------------CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE
Q 006559          408 YLPHGSLHSLLHGSRGP-------------------GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV  468 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~-------------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl  468 (640)
                      |+++|+|.+++......                   ....+++..++.++.|++.||+|||+.   +|+||||||+|||+
T Consensus       107 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dikp~NIli  183 (314)
T 2ivs_A          107 YAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVHRDLAARNILV  183 (314)
T ss_dssp             CCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEE
T ss_pred             ecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCcccccchheEEE
Confidence            99999999999764321                   112488999999999999999999954   59999999999999


Q ss_pred             CCCCCeEEccCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 006559          469 DQLGNACISDIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDG  539 (640)
Q Consensus       469 ~~~~~~kl~DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~  539 (640)
                      +.++.+||+|||+++.....        ...+..|+|||++       ....++.++|||||||++|||+| |+.||...
T Consensus       184 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~el~t~g~~p~~~~  256 (314)
T 2ivs_A          184 AEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESL-------FDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGI  256 (314)
T ss_dssp             ETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHH-------HHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             cCCCCEEEccccccccccccccceeccCCCCcccccChhhh-------cCCCcCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            99999999999998765321        2335679999965       33456789999999999999999 99999754


Q ss_pred             CcchHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          540 ELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      .....  .........        .....   ....++.+++.+||+.||++||++.++++.|+++..+
T Consensus       257 ~~~~~--~~~~~~~~~--------~~~~~---~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~  312 (314)
T 2ivs_A          257 PPERL--FNLLKTGHR--------MERPD---NCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVK  312 (314)
T ss_dssp             CGGGH--HHHHHTTCC--------CCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             CHHHH--HHHhhcCCc--------CCCCc---cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhh
Confidence            32211  111111100        00111   1223467788889999999999999999999998754

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=6.2e-39  Score=339.73  Aligned_cols=238  Identities=20%  Similarity=0.303  Sum_probs=189.1

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+++.. +++.||+|.+...     ...+.+.+|+++++.++|||||++++++...+..|+||||+++
T Consensus        20 ~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~e~~~g   99 (384)
T 4fr4_A           20 LRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLG   99 (384)
T ss_dssp             EEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCCC
Confidence            578999999999999965 5788999998653     2345678899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....    
T Consensus       100 g~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~  171 (384)
T 4fr4_A          100 GDLRYHLQQNV-----HFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQI  171 (384)
T ss_dssp             EEHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTCCB
T ss_pred             CcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEeccceeeeccCCCce
Confidence            99999998643     589999999999999999999954   599999999999999999999999999987542    


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHHHHHHhhcccccccccchhhc
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                       ...+|..|+|||++...    ....++.++|||||||++|||+||+.||..... .............         ..
T Consensus       172 ~~~~gt~~Y~aPE~~~~~----~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~---------~~  238 (384)
T 4fr4_A          172 TTMAGTKPYMAPEMFSSR----KGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTV---------VT  238 (384)
T ss_dssp             CCCCSCGGGCCGGGTCCC----SSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCC---------CC
T ss_pred             eccCCCccccCCeeeccC----CCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhcc---------cC
Confidence             34578899999976321    134578899999999999999999999974322 2222222211110         01


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCC-HHHHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPN-MSIVH  599 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs-~~~v~  599 (640)
                      .+...   ...+.+++..||+.||++||+ +.++.
T Consensus       239 ~p~~~---s~~~~~li~~lL~~dP~~R~s~~~~l~  270 (384)
T 4fr4_A          239 YPSAW---SQEMVSLLKKLLEPNPDQRFSQLSDVQ  270 (384)
T ss_dssp             CCTTS---CHHHHHHHHHHSCSSGGGSCCSHHHHH
T ss_pred             CCCcC---CHHHHHHHHHHhcCCHhHhcccHHHHH
Confidence            11111   234667788899999999998 66654

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=3.8e-39  Score=340.46  Aligned_cols=254  Identities=13%  Similarity=0.111  Sum_probs=189.9

Q ss_pred             hhccccccCcceEEEEEeCC------CcEEEEEEeccccch-------------HHHHHHHHHHhccCCCcccceeEEEE
Q 006559          337 SAELLGKGCVGATYKVVLDG------GDVVVVKRIRERKKK-------------REVDEWLRVIGGLRHSNIVSIRAYCN  397 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~------~~~vavK~l~~~~~~-------------~~~~~e~~~l~~l~H~niv~l~~~~~  397 (640)
                      ..+.||+|+||.||+|+...      +..||||.+......             ..+..|+..+..++||||+++++++.
T Consensus        39 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~  118 (364)
T 3op5_A           39 VGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGL  118 (364)
T ss_dssp             EEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEEEEEE
T ss_pred             EEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEEeeee
Confidence            35789999999999999765      367999998654211             12234555678889999999999987


Q ss_pred             cC----CeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC--CC
Q 006559          398 GK----DELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD--QL  471 (640)
Q Consensus       398 ~~----~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~--~~  471 (640)
                      ..    ...|+||||+ +|+|.+++....    ..+++..++.++.|++.||+|||+.   +|+||||||+|||++  .+
T Consensus       119 ~~~~~~~~~~lv~e~~-g~~L~~~~~~~~----~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~Nill~~~~~  190 (364)
T 3op5_A          119 HDKNGKSYRFMIMDRF-GSDLQKIYEANA----KRFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASNLLLNYKNP  190 (364)
T ss_dssp             EEETTEEEEEEEEECE-EEEHHHHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEESSCT
T ss_pred             eccCCcceEEEEEeCC-CCCHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHHEEEecCCC
Confidence            64    4589999999 999999997642    2589999999999999999999954   599999999999999  88


Q ss_pred             CCeEEccCCcccccCC-------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCC
Q 006559          472 GNACISDIGVHQLFHT-------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD  538 (640)
Q Consensus       472 ~~~kl~DfGl~~~~~~-------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~  538 (640)
                      +.+||+|||+++.+..             ...+|..|+|||++       ....++.++|||||||++|||+||+.||.+
T Consensus       191 ~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~~~Di~slG~~l~el~~g~~Pf~~  263 (364)
T 3op5_A          191 DQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAH-------NGVAPSRRGDLEILGYCMIQWLTGHLPWED  263 (364)
T ss_dssp             TCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHH-------TTCCCCHHHHHHHHHHHHHHHHHSCCTTGG
T ss_pred             CeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHh-------CCCCCCchhhHHHHHHHHHHHHhCCCCccc
Confidence            9999999999976532             12368899999965       344578899999999999999999999974


Q ss_pred             CCcc--hHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 006559          539 GELG--IVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGS  610 (640)
Q Consensus       539 ~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~  610 (640)
                      ....  ...+...... .......+..+..    .....++.+++..||+.+|++||++.++++.|+++.....
T Consensus       264 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~~  332 (364)
T 3op5_A          264 NLKDPKYVRDSKIRYR-ENIASLMDKCFPA----ANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIG  332 (364)
T ss_dssp             GTTCHHHHHHHHHHHH-HCHHHHHHHHSCT----TCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             cccCHHHHHHHHHHhh-hhHHHHHHHhccc----ccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHcC
Confidence            2211  1111111111 1111111211110    1113456778888999999999999999999999876543

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=3.5e-39  Score=338.96  Aligned_cols=242  Identities=14%  Similarity=0.194  Sum_probs=188.4

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc-------cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER-------KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-------~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      ..+.||+|+||.||+|+. .+++.||||++...       ...+.+.+|+++++.++||||+++++++...+..|+||||
T Consensus        28 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~  107 (351)
T 3c0i_A           28 LCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFEF  107 (351)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             EeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEeC
Confidence            457899999999999986 46889999998643       1356788999999999999999999999999999999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC---eEEccCCccccc
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN---ACISDIGVHQLF  485 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~---~kl~DfGl~~~~  485 (640)
                      +++|+|.+++..... ....+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.   +||+|||+++..
T Consensus       108 ~~g~~L~~~l~~~~~-~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~  183 (351)
T 3c0i_A          108 MDGADLCFEIVKRAD-AGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQL  183 (351)
T ss_dssp             CSSCBHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCEEECCCTTCEEC
T ss_pred             CCCCCHHHHHHHhcc-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcEEEecCcceeEe
Confidence            999999888754321 122478999999999999999999954   5999999999999986654   999999999876


Q ss_pred             CC------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccc
Q 006559          486 HT------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       486 ~~------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  559 (640)
                      ..      ...+|..|+|||++.       ...++.++|||||||++|||+||+.||.........   .......  . 
T Consensus       184 ~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~---~i~~~~~--~-  250 (351)
T 3c0i_A          184 GESGLVAGGRVGTPHFMAPEVVK-------REPYGKPVDVWGCGVILFILLSGCLPFYGTKERLFE---GIIKGKY--K-  250 (351)
T ss_dssp             CTTSCBCCCCCSCGGGCCHHHHT-------TCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHHHHHH---HHHHTCC--C-
T ss_pred             cCCCeeecCCcCCcCccCHHHHc-------CCCCCchHhhHHHHHHHHHHHHCCCCCCCcHHHHHH---HHHcCCC--C-
Confidence            43      235688999999753       345678999999999999999999999754321111   1111000  0 


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .++.     .......++.+++.+||+.||++|||+.++++
T Consensus       251 ~~~~-----~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~  286 (351)
T 3c0i_A          251 MNPR-----QWSHISESAKDLVRRMLMLDPAERITVYEALN  286 (351)
T ss_dssp             CCHH-----HHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CCcc-----ccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            0000     01112335677888899999999999999974

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=8.1e-39  Score=331.15  Aligned_cols=233  Identities=21%  Similarity=0.300  Sum_probs=188.6

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+.. +|+.||+|.++..     ...+.+.+|..+++.++||||+++++++.+.+..|+||||+++
T Consensus        11 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~e~~~g   90 (318)
T 1fot_A           11 LRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEG   90 (318)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEEeCCCC
Confidence            568999999999999964 6889999999754     2345677899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---C
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---P  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---~  488 (640)
                      |+|.+++....     .+++.....++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....   .
T Consensus        91 g~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~~~~  162 (318)
T 1fot_A           91 GELFSLLRKSQ-----RFPNPVAKFYAAEVCLALEYLHS---KDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYT  162 (318)
T ss_dssp             CBHHHHHHHTS-----SCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCC
T ss_pred             CCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChheEEEcCCCCEEEeecCcceecCCcccc
Confidence            99999998643     58899999999999999999994   5699999999999999999999999999987643   3


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..+|..|+|||++.       ...++.++|||||||++|||++|+.||.....  ....+.....         ....+.
T Consensus       163 ~~gt~~y~aPE~~~-------~~~~~~~~DiwslG~il~ell~g~~pf~~~~~--~~~~~~i~~~---------~~~~p~  224 (318)
T 1fot_A          163 LCGTPDYIAPEVVS-------TKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT--MKTYEKILNA---------ELRFPP  224 (318)
T ss_dssp             CCSCTTTCCHHHHT-------TCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH--HHHHHHHHHC---------CCCCCT
T ss_pred             ccCCccccCHhHhc-------CCCCCcccchhhhHHHHHHHHhCCCCCCCCCH--HHHHHHHHhC---------CCCCCC
Confidence            45688999999753       34577899999999999999999999975432  1111111111         111111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCC-----CHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRP-----NMSIVH  599 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RP-----s~~~v~  599 (640)
                      ....   ++.+++.+|++.||++||     ++.++.
T Consensus       225 ~~~~---~~~~li~~lL~~dp~~R~~~~~~~~~~i~  257 (318)
T 1fot_A          225 FFNE---DVKDLLSRLITRDLSQRLGNLQNGTEDVK  257 (318)
T ss_dssp             TSCH---HHHHHHHHHTCSCTTTCTTSSTTTTHHHH
T ss_pred             CCCH---HHHHHHHHHhccCHHHcCCCcCCCHHHHh
Confidence            2222   456677789999999999     788876

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.5e-38  Score=329.56  Aligned_cols=266  Identities=18%  Similarity=0.208  Sum_probs=198.0

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCC--eEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKD--ELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~--~~~lV~Ey~~~  411 (640)
                      .++||+|+||.||+|+.. +++.||||++...   ...+.+.+|++++++++||||+++++++...+  ..++||||+++
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~   93 (319)
T 4euu_A           14 SDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPC   93 (319)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEECCTT
T ss_pred             EEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEEeCCCC
Confidence            568999999999999965 4889999999754   23466778999999999999999999998755  78999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE----CCCCCeEEccCCcccccCC
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV----DQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl----~~~~~~kl~DfGl~~~~~~  487 (640)
                      |+|.+++.....  ...+++..+..++.|++.||+|||+.   +|+||||||+|||+    +.++.+||+|||+++....
T Consensus        94 ~~L~~~l~~~~~--~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~  168 (319)
T 4euu_A           94 GSLYTVLEEPSN--AYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELED  168 (319)
T ss_dssp             CBHHHHHHSGGG--TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCT
T ss_pred             CCHHHHHHHhcc--ccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEccCCCceecCC
Confidence            999999986432  22389999999999999999999954   59999999999999    7888899999999987643


Q ss_pred             -----CccccccccCCccccCCCC-ccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc--chHHHHHHhhc-c--ccc
Q 006559          488 -----PFFINDAYNAPELKFNNNN-NYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL--GIVKWVQMMGQ-D--ESA  556 (640)
Q Consensus       488 -----~~~~~~~y~aPE~~~~~~~-~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~--~~~~~~~~~~~-~--~~~  556 (640)
                           ...+|..|+|||++..... ......++.++|||||||++|||+||+.||.....  .....+..... .  ...
T Consensus       169 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~  248 (319)
T 4euu_A          169 DEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAI  248 (319)
T ss_dssp             TCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTTCC
T ss_pred             CCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcccc
Confidence                 2346889999997532110 11135678899999999999999999999963221  11111111111 1  000


Q ss_pred             ccc-------cc--hhhccC-hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          557 WEV-------FD--FELIMD-KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       557 ~~~-------~d--~~~~~~-~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ..+       ++  ...... .........+.+++..||+.||++|||+.|+++...+....
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~~~  310 (319)
T 4euu_A          249 SGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR  310 (319)
T ss_dssp             EEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHTC-
T ss_pred             hhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHhhc
Confidence            000       00  000000 11133445677788889999999999999999988876543

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=5.8e-39  Score=360.92  Aligned_cols=242  Identities=23%  Similarity=0.296  Sum_probs=193.0

Q ss_pred             cccccCcceEEEEEeC---CCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          340 LLGKGCVGATYKVVLD---GGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~---~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .||+|+||.||+|.+.   ++..||||+++..   ...+++.+|++++++++|||||+++++|.. +..++|||||++|+
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~  421 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGP  421 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTCB
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCc
Confidence            6999999999999864   4567999999864   345778999999999999999999999976 56999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-----
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-----  488 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-----  488 (640)
                      |.+++....    ..+++..+..++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++.....     
T Consensus       422 L~~~l~~~~----~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~  494 (613)
T 2ozo_A          422 LHKFLVGKR----EEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYT  494 (613)
T ss_dssp             HHHHHTTCT----TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC-------
T ss_pred             HHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceee
Confidence            999997543    2589999999999999999999954   5999999999999999999999999999876421     


Q ss_pred             ----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchh
Q 006559          489 ----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       489 ----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                          ...+..|+|||++       ....++.++|||||||++|||+| |+.||......  +..+.......        
T Consensus       495 ~~~~~~~~~~y~APE~~-------~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--~~~~~i~~~~~--------  557 (613)
T 2ozo_A          495 ARSAGKWPLKWYAPECI-------NFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFIEQGKR--------  557 (613)
T ss_dssp             -------CCTTSCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSH--HHHHHHHTTCC--------
T ss_pred             eccCCCCccceeCHhhh-------cCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHH--HHHHHHHcCCC--------
Confidence                1224679999964       44567889999999999999998 99999753322  11111111110        


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG  609 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~  609 (640)
                      ...+.   .+..++.+++..||+.||++||++.+|++.|+.+....
T Consensus       558 ~~~p~---~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~  600 (613)
T 2ozo_A          558 MECPP---ECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSL  600 (613)
T ss_dssp             CCCCT---TCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCC---cCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHh
Confidence            00111   22345777888999999999999999999999987543

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=7.9e-39  Score=326.71  Aligned_cols=249  Identities=21%  Similarity=0.364  Sum_probs=188.2

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||.||+|+..+++.||||++....    ..+.+.+|++++++++||||+++++++...+..++||||+++ +
T Consensus         7 ~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~   85 (288)
T 1ob3_A            7 LEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQ-D   85 (288)
T ss_dssp             EEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCSE-E
T ss_pred             hhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEecCC-C
Confidence            46799999999999999889999999986542    236678999999999999999999999999999999999985 9


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------  487 (640)
                      |.+++....+    .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....      
T Consensus        86 l~~~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  158 (288)
T 1ob3_A           86 LKKLLDVCEG----GLESVTAKSFLLQLLNGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYT  158 (288)
T ss_dssp             HHHHHHTSTT----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC------
T ss_pred             HHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEEeECccccccCccccccc
Confidence            9998875432    47899999999999999999995   4599999999999999999999999999876542      


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc--hHHHHHHhhccc-cccc------
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG--IVKWVQMMGQDE-SAWE------  558 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~--~~~~~~~~~~~~-~~~~------  558 (640)
                      ...+|..|+|||++.+      ...++.++|||||||++|||+||+.||......  .....+...... ..+.      
T Consensus       159 ~~~~t~~y~aPE~~~~------~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (288)
T 1ob3_A          159 HEIVTLWYRAPDVLMG------SKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELP  232 (288)
T ss_dssp             ---CCCTTCCHHHHTT------CCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGST
T ss_pred             cccccccccCchheeC------CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhccc
Confidence            2345889999997532      235678999999999999999999999753321  111111111110 0000      


Q ss_pred             ccchhhcc------ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          559 VFDFELIM------DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       559 ~~d~~~~~------~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..++....      .........++.+++.+||+.||++|||+.|+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  280 (288)
T 1ob3_A          233 KYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (288)
T ss_dssp             TCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            00100000      0000112235667888899999999999999864

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=6.4e-39  Score=333.32  Aligned_cols=243  Identities=24%  Similarity=0.339  Sum_probs=188.7

Q ss_pred             hccccccCcceEEEEEeC-CCcE----EEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVLD-GGDV----VVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~----vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .+.||+|+||.||+|+.. ++..    ||+|.+....   ..+.+.+|+.++++++||||+++++++. .+..++||||+
T Consensus        18 ~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~   96 (325)
T 3kex_A           18 LKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQLVTQYL   96 (325)
T ss_dssp             EEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEEEEECC
T ss_pred             eeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEEEEEeC
Confidence            568999999999999964 3443    7888775442   2345678899999999999999999986 56799999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-  488 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-  488 (640)
                      ++|+|.+++....    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++..... 
T Consensus        97 ~~~~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~  169 (325)
T 3kex_A           97 PLGSLLDHVRQHR----GALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDD  169 (325)
T ss_dssp             TTCBSHHHHHSSG----GGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCT
T ss_pred             CCCCHHHHHHHcc----ccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECCCCcccccCccc
Confidence            9999999997643    2578889999999999999999954   5999999999999999999999999999876321 


Q ss_pred             -------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhccccccccc
Q 006559          489 -------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVF  560 (640)
Q Consensus       489 -------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  560 (640)
                             ..++..|+|||++       ....++.++|||||||++|||+| |+.||.........  .........   .
T Consensus       170 ~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~--~~~~~~~~~---~  237 (325)
T 3kex_A          170 KQLLYSEAKTPIKWMALESI-------HFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVP--DLLEKGERL---A  237 (325)
T ss_dssp             TCCC-----CCTTTSCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHH--HHHHTTCBC---C
T ss_pred             ccccccCCCCcccccChHHh-------ccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHH--HHHHcCCCC---C
Confidence                   2345689999964       34567889999999999999999 99999754332221  111111000   0


Q ss_pred             chhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          561 DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       561 d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      .+.        ....++.+++..||+.||++||++.++++.|+++...
T Consensus       238 ~~~--------~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~  277 (325)
T 3kex_A          238 QPQ--------ICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARD  277 (325)
T ss_dssp             CCT--------TBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTS
T ss_pred             CCC--------cCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence            000        0112356678889999999999999999999998654

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.7e-39  Score=341.19  Aligned_cols=245  Identities=22%  Similarity=0.327  Sum_probs=185.4

Q ss_pred             hccccccCcceEEEEEeC--CC--cEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEc-CCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVLD--GG--DVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNG-KDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~--~~--~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~-~~~~~lV~Ey~  409 (640)
                      .+.||+|+||.||+|+..  ++  ..||||.++...   ..+.+.+|+.++++++||||++++++|.. .+..++||||+
T Consensus        94 ~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~e~~  173 (373)
T 3c1x_A           94 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  173 (373)
T ss_dssp             EEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEEECC
T ss_pred             CcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEEECC
Confidence            568999999999999863  22  358999987542   34568889999999999999999999765 45789999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-  488 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-  488 (640)
                      ++|+|.+++....    ..+++..+..++.|+++||+|||+.   +|+||||||+|||++.++.+||+|||+++..... 
T Consensus       174 ~~g~L~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~  246 (373)
T 3c1x_A          174 KHGDLRNFIRNET----HNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE  246 (373)
T ss_dssp             TTCBHHHHHHCTT----CCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC----------
T ss_pred             CCCCHHHHHhhcc----cCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeeccccccccccc
Confidence            9999999997543    2478999999999999999999954   5999999999999999999999999999765321 


Q ss_pred             ---------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCc-chHHHHHHhhcccccc
Q 006559          489 ---------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGEL-GIVKWVQMMGQDESAW  557 (640)
Q Consensus       489 ---------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~-~~~~~~~~~~~~~~~~  557 (640)
                               ...+..|+|||++       ....++.++|||||||++|||+| |.+||..... .....+..   .... 
T Consensus       247 ~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~~~---~~~~-  315 (373)
T 3c1x_A          247 FDSVHNKTGAKLPVKWMALESL-------QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQ---GRRL-  315 (373)
T ss_dssp             -----------CCGGGSCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHHHT---TCCC-
T ss_pred             cccccccCCCCCcccccChHHh-------cCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHc---CCCC-
Confidence                     2235679999964       34567889999999999999999 6777764322 22222111   1000 


Q ss_pred             cccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 006559          558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGS  610 (640)
Q Consensus       558 ~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~  610 (640)
                             ..+.   .....+.+++..||+.||++||++.++++.|+++.....
T Consensus       316 -------~~p~---~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~  358 (373)
T 3c1x_A          316 -------LQPE---YCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFI  358 (373)
T ss_dssp             -------CCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCC
T ss_pred             -------CCCC---CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcc
Confidence                   0111   122346778888999999999999999999999986644

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=9.8e-39  Score=336.75  Aligned_cols=239  Identities=18%  Similarity=0.239  Sum_probs=188.1

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ..+.||+|+||.||+|+.. ++..||||.+....    ..+.+.+|++++++++||||+++++++...+..|+||||+++
T Consensus        33 ~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g  112 (362)
T 2bdw_A           33 VKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTG  112 (362)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             EeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCC
Confidence            3578999999999999964 58899999997542    235677899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC---CCeEEccCCcccccCC-
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL---GNACISDIGVHQLFHT-  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~---~~~kl~DfGl~~~~~~-  487 (640)
                      |+|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||++.+   +.+||+|||+++.... 
T Consensus       113 g~L~~~l~~~~-----~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~  184 (362)
T 2bdw_A          113 GELFEDIVARE-----FYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDS  184 (362)
T ss_dssp             CBHHHHHTTCS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTC
T ss_pred             CCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEeecCcceEecCC
Confidence            99999987543     588999999999999999999954   59999999999999865   4599999999987643 


Q ss_pred             ----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchh
Q 006559          488 ----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       488 ----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                          ...+|..|+|||++.       ...++.++|||||||++|||+||+.||......  ...........  ....  
T Consensus       185 ~~~~~~~gt~~y~aPE~~~-------~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~--~~~~~i~~~~~--~~~~--  251 (362)
T 2bdw_A          185 EAWHGFAGTPGYLSPEVLK-------KDPYSKPVDIWACGVILYILLVGYPPFWDEDQH--RLYAQIKAGAY--DYPS--  251 (362)
T ss_dssp             CSCCCSCSCTTTCCHHHHT-------TCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHTCC--CCCT--
T ss_pred             cccccCCCCccccCHHHHc-------cCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHhCCC--CCCc--
Confidence                235688999999753       345778999999999999999999999754321  11111111100  0000  


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                          +.......++.+++.+||+.||++||++.++++
T Consensus       252 ----~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  284 (362)
T 2bdw_A          252 ----PEWDTVTPEAKSLIDSMLTVNPKKRITADQALK  284 (362)
T ss_dssp             ----TGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             ----ccccCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence                001112234667788899999999999998864

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=1.4e-38  Score=343.86  Aligned_cols=239  Identities=17%  Similarity=0.219  Sum_probs=187.4

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ..+.||+|+||.||+|.. .+|..+|+|.+....    ..+.+.+|++++++++||||+++++++.+.+..|+||||+++
T Consensus        15 i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~E~~~g   94 (444)
T 3soa_A           15 LFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTG   94 (444)
T ss_dssp             EEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEECCCBC
T ss_pred             EEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEEEeCCC
Confidence            357899999999999985 568899999987552    235678899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC---CCCCeEEccCCcccccCC-
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD---QLGNACISDIGVHQLFHT-  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~---~~~~~kl~DfGl~~~~~~-  487 (640)
                      |+|.+++....     .+++.....++.|++.||+|||+.   +|+||||||+|||++   .++.+||+|||+++.... 
T Consensus        95 g~L~~~i~~~~-----~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~  166 (444)
T 3soa_A           95 GELFEDIVARE-----YYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGE  166 (444)
T ss_dssp             CBHHHHHHHCS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTT
T ss_pred             CCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEEccCceeEEecCC
Confidence            99999987643     588999999999999999999954   599999999999998   567899999999977643 


Q ss_pred             -----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccch
Q 006559          488 -----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       488 -----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                           ...+|..|+|||++       ....++.++||||+||++|||++|+.||.+....  ...+.......  ....+
T Consensus       167 ~~~~~~~~gt~~Y~APE~l-------~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~--~~~~~i~~~~~--~~~~~  235 (444)
T 3soa_A          167 QQAWFGFAGTPGYLSPEVL-------RKDPYGKPVDLWACGVILYILLVGYPPFWDEDQH--RLYQQIKAGAY--DFPSP  235 (444)
T ss_dssp             CCBCCCSCSCGGGCCHHHH-------TTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHHHHTCC--CCCTT
T ss_pred             CceeecccCCcccCCHHHh-------cCCCCCCccccHHHHHHHHHHHhCCCCCCCccHH--HHHHHHHhCCC--CCCcc
Confidence                 23568899999975       3345778999999999999999999999754321  11111111100  00000


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                            .......++.+++..||+.||++|||+.|+++
T Consensus       236 ------~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~  267 (444)
T 3soa_A          236 ------EWDTVTPEAKDLINKMLTINPSKRITAAEALK  267 (444)
T ss_dssp             ------TTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             ------ccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence                  00112234667788899999999999999875

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=4.2e-39  Score=327.48  Aligned_cols=244  Identities=19%  Similarity=0.281  Sum_probs=184.0

Q ss_pred             hhccccccCcceEEEEEeCC----CcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLDG----GDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~----~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ..+.||+|+||.||+|+...    +..||+|.+....   ..+.+.+|+.++++++||||+++++++. .+..++||||+
T Consensus        19 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e~~   97 (281)
T 1mp8_A           19 LGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELC   97 (281)
T ss_dssp             EEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEEEEECC
T ss_pred             EEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccEEEEecC
Confidence            35789999999999998643    4569999987542   3456788999999999999999999985 56789999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-  488 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-  488 (640)
                      ++|+|.+++....    ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++..... 
T Consensus        98 ~~~~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  170 (281)
T 1mp8_A           98 TLGELRSFLQVRK----YSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST  170 (281)
T ss_dssp             TTEEHHHHHHHTT----TTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECC-----------
T ss_pred             CCCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHh---CCeecccccHHHEEECCCCCEEECccccccccCccc
Confidence            9999999997543    258899999999999999999995   45999999999999999999999999999876432 


Q ss_pred             ------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccc
Q 006559          489 ------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFD  561 (640)
Q Consensus       489 ------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  561 (640)
                            ...+..|+|||++       ....++.++|||||||++|||++ |+.||.......  ..........      
T Consensus       171 ~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~--~~~~i~~~~~------  235 (281)
T 1mp8_A          171 YYKASKGKLPIKWMAPESI-------NFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND--VIGRIENGER------  235 (281)
T ss_dssp             --------CCGGGCCHHHH-------HHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHHHHHTTCC------
T ss_pred             ccccccCCCcccccChhhc-------ccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHH--HHHHHHcCCC------
Confidence                  2235679999964       34567789999999999999997 999997533221  1111111100      


Q ss_pred             hhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       562 ~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                        .....   .....+.+++..||+.||++|||+.++++.|+++...
T Consensus       236 --~~~~~---~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  277 (281)
T 1mp8_A          236 --LPMPP---NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE  277 (281)
T ss_dssp             --CCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             --CCCCC---CCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence              00111   1223466788889999999999999999999998643

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.9e-39  Score=333.46  Aligned_cols=234  Identities=19%  Similarity=0.270  Sum_probs=186.4

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+. .+++.||||++...     ...+.+.+|+++++.++||||+++++++...+..++||||+ +
T Consensus        14 ~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~E~~-~   92 (336)
T 3h4j_B           14 RETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVIEYA-G   92 (336)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCC-C
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEECC-C
Confidence            56899999999999996 57889999998653     22456889999999999999999999999999999999999 7


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....    
T Consensus        93 g~l~~~l~~~~-----~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~~  164 (336)
T 3h4j_B           93 GELFDYIVEKK-----RMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFL  164 (336)
T ss_dssp             EEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBTT
T ss_pred             CcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEeccceeccCCccc
Confidence            89999887543     588999999999999999999954   599999999999999999999999999987543    


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                       ...+|..|+|||++.+.      ...+.++|||||||++|||++|+.||.+......           ...+.......
T Consensus       165 ~~~~gt~~y~aPE~~~~~------~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~-----------~~~i~~~~~~~  227 (336)
T 3h4j_B          165 KTSCGSPNYAAPEVINGK------LYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL-----------FKKVNSCVYVM  227 (336)
T ss_dssp             CCCTTSTTTSCGGGSCCS------GGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC-----------BCCCCSSCCCC
T ss_pred             ccccCCcCcCCHHHHcCC------CCCCCccchhHHHHHHHHHHhCCCCCCCccHHHH-----------HHHHHcCCCCC
Confidence             34568899999975322      1125789999999999999999999975321110           00111111111


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      +...+   ..+.+++.+||+.||++|||+.|+++
T Consensus       228 p~~~s---~~~~~li~~~L~~dP~~Rpt~~eil~  258 (336)
T 3h4j_B          228 PDFLS---PGAQSLIRRMIVADPMQRITIQEIRR  258 (336)
T ss_dssp             CTTSC---HHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred             cccCC---HHHHHHHHHHcCCChhHCcCHHHHHh
Confidence            11122   34567788899999999999999965

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=5.4e-39  Score=331.59  Aligned_cols=251  Identities=21%  Similarity=0.331  Sum_probs=196.8

Q ss_pred             hhccccccCcceEEEEEe------CCCcEEEEEEecccc---chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEE
Q 006559          337 SAELLGKGCVGATYKVVL------DGGDVVVVKRIRERK---KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVY  406 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~------~~~~~vavK~l~~~~---~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~  406 (640)
                      ..+.||+|+||.||+|+.      .++..||||.++...   ..+.+.+|+++++++ +||||+++++++...+..++||
T Consensus        27 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~  106 (313)
T 1t46_A           27 FGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVIT  106 (313)
T ss_dssp             EEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             HHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCCcEEEE
Confidence            357899999999999985      346789999997653   345688999999999 9999999999999999999999


Q ss_pred             eccCCCCHHHhhccCCCC-------------CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC
Q 006559          407 DYLPHGSLHSLLHGSRGP-------------GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN  473 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~-------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~  473 (640)
                      ||+++|+|.+++......             ...++++..+..++.|++.||+|||+.   +|+||||||+||+++.++.
T Consensus       107 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~  183 (313)
T 1t46_A          107 EYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILLTHGRI  183 (313)
T ss_dssp             ECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEETTTE
T ss_pred             ecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEEEcCCCC
Confidence            999999999999765321             122589999999999999999999954   5999999999999999999


Q ss_pred             eEEccCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchH
Q 006559          474 ACISDIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIV  544 (640)
Q Consensus       474 ~kl~DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~  544 (640)
                      +||+|||+++.....        ..++..|+|||++       ....++.++|||||||++|||+| |+.||........
T Consensus       184 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~  256 (313)
T 1t46_A          184 TKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESI-------FNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK  256 (313)
T ss_dssp             EEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHH
T ss_pred             EEEccccccccccccccceeccCCCCcceeeChHHh-------cCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhH
Confidence            999999999876432        2235679999965       34567789999999999999999 9999975433221


Q ss_pred             HHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 006559          545 KWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG  609 (640)
Q Consensus       545 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~  609 (640)
                      . .+......      .  ......   ...++.+++..||+.||++|||+.++++.|+++..+.
T Consensus       257 ~-~~~~~~~~------~--~~~~~~---~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~  309 (313)
T 1t46_A          257 F-YKMIKEGF------R--MLSPEH---APAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISES  309 (313)
T ss_dssp             H-HHHHHHTC------C--CCCCTT---SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred             H-HHHhccCC------C--CCCccc---CCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHh
Confidence            1 11111000      0  000111   1234677888899999999999999999999987653

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=8.7e-39  Score=338.42  Aligned_cols=244  Identities=20%  Similarity=0.276  Sum_probs=187.4

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      .++||+|+||.||+|+. .+|..||+|+++..  ...+.+.+|++++++++||||+++++++...+..++||||+++|+|
T Consensus        94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L  173 (373)
T 2x4f_A           94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGEL  173 (373)
T ss_dssp             EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEE
T ss_pred             ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcH
Confidence            46799999999999986 46889999999765  3456788999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE--CCCCCeEEccCCcccccCC-----
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV--DQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl--~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      .+++....    ..+++..+..++.|++.||+|||+.   +|+||||||+|||+  +.++.+||+|||+++....     
T Consensus       174 ~~~l~~~~----~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~~  246 (373)
T 2x4f_A          174 FDRIIDES----YNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLK  246 (373)
T ss_dssp             HHHHHHTG----GGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBCC
T ss_pred             HHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccccc
Confidence            99886542    2588999999999999999999954   59999999999999  6778999999999987643     


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      ...+|..|+|||++       ....++.++|||||||++|||+||+.||.....  ...........  +....      
T Consensus       247 ~~~gt~~y~aPE~~-------~~~~~~~~~DiwslG~il~elltg~~pf~~~~~--~~~~~~i~~~~--~~~~~------  309 (373)
T 2x4f_A          247 VNFGTPEFLAPEVV-------NYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDND--AETLNNILACR--WDLED------  309 (373)
T ss_dssp             CCCSSCTTCCHHHH-------TTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSH--HHHHHHHHHTC--CCSCS------
T ss_pred             cccCCCcEeChhhc-------cCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhcc--CCCCh------
Confidence            23468899999975       334567899999999999999999999975432  11111111110  00000      


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHh
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDI  605 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i  605 (640)
                      ........++.+++..||+.||++||++.|+++  .+.+.
T Consensus       310 ~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~hp~~~~~  349 (373)
T 2x4f_A          310 EEFQDISEEAKEFISKLLIKEKSWRISASEALKHPWLSDH  349 (373)
T ss_dssp             GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHCH
T ss_pred             hhhccCCHHHHHHHHHHcCCChhhCCCHHHHhcCcCcCCC
Confidence            011112235677888899999999999999976  55443

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.1e-39  Score=332.45  Aligned_cols=244  Identities=20%  Similarity=0.325  Sum_probs=187.7

Q ss_pred             hhccccccCcceEEEEEeC-CCcE----EEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDV----VVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~----vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      ..+.||+|+||.||+|+.. +++.    ||+|.+...   ...+.+.+|++++++++||||+++++++.... .++|+||
T Consensus        19 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~v~~~   97 (327)
T 3lzb_A           19 KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQLITQL   97 (327)
T ss_dssp             EEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EEEEECC
T ss_pred             EEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ceEEEEe
Confidence            3578999999999999954 4443    577777543   34577889999999999999999999998654 8899999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP  488 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~  488 (640)
                      +++|+|.+++.....    .+++..++.++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.....
T Consensus        98 ~~~g~L~~~l~~~~~----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~  170 (327)
T 3lzb_A           98 MPFGCLLDYVREHKD----NIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAE  170 (327)
T ss_dssp             CSSCBHHHHHHHTTT----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTC-------
T ss_pred             cCCCcHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEccCcceeEccCc
Confidence            999999999976532    588999999999999999999954   5999999999999999999999999999875421


Q ss_pred             --------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccc
Q 006559          489 --------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       489 --------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  559 (640)
                              ..++..|+|||++       ....++.++|||||||++|||+| |+.||.........  +.......    
T Consensus       171 ~~~~~~~~~~~t~~y~aPE~~-------~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~--~~~~~~~~----  237 (327)
T 3lzb_A          171 EKEYHAEGGKVPIKWMALESI-------LHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEIS--SILEKGER----  237 (327)
T ss_dssp             ---------CCCGGGSCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHH--HHHHTTCC----
T ss_pred             cccccccCCCccccccCHHHH-------cCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH--HHHHcCCC----
Confidence                    2235679999964       34567889999999999999999 99999754332221  11111100    


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                          ......   ...++.+++..||+.||++||++.|+++.|+++...
T Consensus       238 ----~~~~~~---~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  279 (327)
T 3lzb_A          238 ----LPQPPI---CTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARD  279 (327)
T ss_dssp             ----CCCCTT---BCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred             ----CCCCcc---CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence                001111   123466788889999999999999999999998754

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=1e-38  Score=327.42  Aligned_cols=238  Identities=19%  Similarity=0.273  Sum_probs=182.0

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccccc----------------------------hHHHHHHHHHHhccCCCc
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERKK----------------------------KREVDEWLRVIGGLRHSN  388 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~----------------------------~~~~~~e~~~l~~l~H~n  388 (640)
                      .+.||+|+||.||+|+. .+++.||||++.....                            .+.+.+|++++++++|||
T Consensus        18 ~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~   97 (298)
T 2zv2_A           18 KDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPN   97 (298)
T ss_dssp             EEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHTCCCTT
T ss_pred             EeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhCCCCC
Confidence            56899999999999986 4678899999865421                            245788999999999999


Q ss_pred             ccceeEEEEc--CCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCe
Q 006559          389 IVSIRAYCNG--KDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNI  466 (640)
Q Consensus       389 iv~l~~~~~~--~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NI  466 (640)
                      |+++++++..  .+..++||||+++|+|.+++...      ++++..+..++.|++.||+|||+.   +|+||||||+||
T Consensus        98 iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Ni  168 (298)
T 2zv2_A           98 VVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLK------PLSEDQARFYFQDLIKGIEYLHYQ---KIIHRDIKPSNL  168 (298)
T ss_dssp             BCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSS------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGE
T ss_pred             CCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHE
Confidence            9999999986  56899999999999998875432      589999999999999999999954   599999999999


Q ss_pred             EECCCCCeEEccCCcccccCC------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 006559          467 VVDQLGNACISDIGVHQLFHT------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGE  540 (640)
Q Consensus       467 Ll~~~~~~kl~DfGl~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~  540 (640)
                      |++.++.+||+|||+++....      ...+|..|+|||++.....    ..++.++|||||||++|||++|+.||....
T Consensus       169 l~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~----~~~~~~~Di~slG~~l~~l~~g~~pf~~~~  244 (298)
T 2zv2_A          169 LVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRK----IFSGKALDVWAMGVTLYCFVFGQCPFMDER  244 (298)
T ss_dssp             EECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCC----CEESHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             EECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCC----CCCCchhhhHhHHHHHHHHHHCCCCCCCcc
Confidence            999999999999999987643      2356889999997633211    113578999999999999999999997543


Q ss_pred             cchHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          541 LGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .  ..+..........       ......   ...++.+++.+||+.||++||++.|+++
T Consensus       245 ~--~~~~~~~~~~~~~-------~~~~~~---~~~~l~~li~~~l~~dp~~R~s~~e~l~  292 (298)
T 2zv2_A          245 I--MCLHSKIKSQALE-------FPDQPD---IAEDLKDLITRMLDKNPESRIVVPEIKL  292 (298)
T ss_dssp             H--HHHHHHHHHCCCC-------CCSSSC---CCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             H--HHHHHHHhcccCC-------CCCccc---cCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence            2  2222211111000       000111   1234667788899999999999999864

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=1.8e-38  Score=338.40  Aligned_cols=192  Identities=21%  Similarity=0.248  Sum_probs=163.2

Q ss_pred             hhcccccc--CcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKG--CVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G--~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ..+.||+|  +||.||+|+.. +++.||||++....    ..+.+.+|++++++++|||||++++++...+..|+|||||
T Consensus        29 ~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  108 (389)
T 3gni_B           29 LLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFM  108 (389)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             EEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEEEEEcc
Confidence            35789999  99999999975 68899999997552    2345778999999999999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC---
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH---  486 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~---  486 (640)
                      ++|+|.+++.....   ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||.+....   
T Consensus       109 ~~~~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~~  182 (389)
T 3gni_B          109 AYGSAKDLICTHFM---DGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMISHG  182 (389)
T ss_dssp             TTCBHHHHHHHTCT---TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCGGGCEECEETT
T ss_pred             CCCCHHHHHhhhcc---cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccccceeecccc
Confidence            99999999976532   2488999999999999999999954   59999999999999999999999999875431   


Q ss_pred             ----------CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 006559          487 ----------TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG  539 (640)
Q Consensus       487 ----------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~  539 (640)
                                ....+|..|+|||++...     ...++.++|||||||++|||+||+.||.+.
T Consensus       183 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~~~DiwslG~il~el~~g~~pf~~~  240 (389)
T 3gni_B          183 QRQRVVHDFPKYSVKVLPWLSPEVLQQN-----LQGYDAKSDIYSVGITACELANGHVPFKDM  240 (389)
T ss_dssp             EECSCBCCCCTTCTTTGGGSCHHHHSTT-----SSCBCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             ccccccccccccccccccccCHHHHhcc-----CCCCCcHhHHHHHHHHHHHHHHCCCCCCCC
Confidence                      112457789999976321     245788999999999999999999999753

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=1e-38  Score=331.66  Aligned_cols=239  Identities=20%  Similarity=0.296  Sum_probs=174.5

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccccchHHHHHHHHHHhccC-CCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERKKKREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      .+.||+|+||.||+|+.. +++.||||++... ....+.+|+++++.+. ||||+++++++.+....|+||||+++|+|.
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~   94 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR-MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELF   94 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG-GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHH
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChh-hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcHH
Confidence            467999999999999975 5889999998654 3456778899999987 999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC---CeEEccCCcccccCC-----
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG---NACISDIGVHQLFHT-----  487 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~---~~kl~DfGl~~~~~~-----  487 (640)
                      +++....     .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++   .+||+|||+++....     
T Consensus        95 ~~l~~~~-----~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~  166 (325)
T 3kn6_A           95 ERIKKKK-----HFSETEASYIMRKLVSAVSHMHD---VGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPL  166 (325)
T ss_dssp             HHHHHCS-----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-----
T ss_pred             HHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCcc
Confidence            9998653     58999999999999999999995   4599999999999997665   899999999986532     


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-----chHHHHHHhhcccccccccc
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-----GIVKWVQMMGQDESAWEVFD  561 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~d  561 (640)
                       ...+|..|+|||++       ....++.++|||||||++|||+||+.||.....     ...+..+........   . 
T Consensus       167 ~~~~~t~~y~aPE~~-------~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~---~-  235 (325)
T 3kn6_A          167 KTPCFTLHYAAPELL-------NQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFS---F-  235 (325)
T ss_dssp             ------------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCC---C-
T ss_pred             cccCCCcCccCHHHh-------cCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCC---C-
Confidence             23458899999964       344577899999999999999999999975322     111222221111000   0 


Q ss_pred             hhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       562 ~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                          ..........++.+++..||+.||++|||+.++++
T Consensus       236 ----~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  270 (325)
T 3kn6_A          236 ----EGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY  270 (325)
T ss_dssp             ----CSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred             ----CcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence                01111223345777888899999999999998863

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=1.9e-38  Score=323.50  Aligned_cols=246  Identities=23%  Similarity=0.361  Sum_probs=197.8

Q ss_pred             hhccccccCcceEEEEEeCC-CcEEEEEEecccc-chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          337 SAELLGKGCVGATYKVVLDG-GDVVVVKRIRERK-KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~~-~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ..+.||+|+||.||+|+... +..||+|.+.... ..+.+.+|++++++++||||+++++++...+..++||||+++|+|
T Consensus        17 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   96 (288)
T 3kfa_A           17 MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL   96 (288)
T ss_dssp             EEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTEEH
T ss_pred             EEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEEcCCCCcH
Confidence            35689999999999999764 7889999998653 456788999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc-----
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF-----  489 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~-----  489 (640)
                      .+++....   ...+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......     
T Consensus        97 ~~~~~~~~---~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~  170 (288)
T 3kfa_A           97 LDYLRECN---RQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA  170 (288)
T ss_dssp             HHHHHHCC---TTTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSSEEET
T ss_pred             HHHHHhcc---cCCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCccceeccCCcccccc
Confidence            99997643   23589999999999999999999954   59999999999999999999999999998765322     


Q ss_pred             --cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          490 --FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       490 --~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                        ..+..|+|||++       ....++.++|||||||++|||++ |+.||........  .+.......        ...
T Consensus       171 ~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~--~~~~~~~~~--------~~~  233 (288)
T 3kfa_A          171 GAKFPIKWTAPESL-------AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQV--YELLEKDYR--------MER  233 (288)
T ss_dssp             TEEECGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGH--HHHHHTTCC--------CCC
T ss_pred             CCccccCcCChhhh-------ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHH--HHHHhccCC--------CCC
Confidence              235679999964       34567789999999999999999 9999975432211  111111100        001


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ..   .....+.+++..||+.||++|||+.++++.|+++..+
T Consensus       234 ~~---~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~  272 (288)
T 3kfa_A          234 PE---GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE  272 (288)
T ss_dssp             CT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CC---CCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHh
Confidence            11   1123467788889999999999999999999998765

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=2.7e-39  Score=358.37  Aligned_cols=245  Identities=23%  Similarity=0.389  Sum_probs=196.9

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ..+.||+|+||.||+|++.++..||||+++.. ...+++.+|++++++++|||||++++++.. +..|+|||||++|+|.
T Consensus       271 ~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~~~~gsL~  349 (535)
T 2h8h_A          271 LEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLL  349 (535)
T ss_dssp             EEEEEEECSSEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTTEEHH
T ss_pred             hheecccCCCeEEEEEEECCCceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeehhcCCcHH
Confidence            35689999999999999988888999999865 345779999999999999999999999876 6789999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-------
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-------  488 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-------  488 (640)
                      ++++...+   ..+++..++.++.||+.||+|||+   .+|+||||||+|||++.++.+||+|||+++.....       
T Consensus       350 ~~l~~~~~---~~l~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~  423 (535)
T 2h8h_A          350 DFLKGETG---KYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQG  423 (535)
T ss_dssp             HHHSHHHH---TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHTTCS
T ss_pred             HHHhhcCC---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCceecccC
Confidence            99974321   247899999999999999999995   45999999999999999999999999999876421       


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      ...+..|+|||++       ....++.++|||||||++|||+| |+.||.....  .+....+.....        ....
T Consensus       424 ~~~~~~y~aPE~~-------~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~--~~~~~~i~~~~~--------~~~~  486 (535)
T 2h8h_A          424 AKFPIKWTAPEAA-------LYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN--REVLDQVERGYR--------MPCP  486 (535)
T ss_dssp             TTSCGGGSCHHHH-------HHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCH--HHHHHHHHTTCC--------CCCC
T ss_pred             CcCcccccCHHHh-------ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHcCCC--------CCCC
Confidence            2235679999964       34567889999999999999999 9999975322  122222111100        0011


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      .   .....+.+++..||+.||++|||+.+|++.|+++...
T Consensus       487 ~---~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~  524 (535)
T 2h8h_A          487 P---ECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS  524 (535)
T ss_dssp             T---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCC
T ss_pred             C---CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhc
Confidence            1   1233567788899999999999999999999998754

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-38  Score=329.11  Aligned_cols=233  Identities=22%  Similarity=0.232  Sum_probs=178.8

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhc-cCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGG-LRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~-l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..++||+|+||+||+|+.. +++.||||++....    .......|+..+.+ .+||||++++++|...+..++||||+ 
T Consensus        61 ~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~e~~-  139 (311)
T 3p1a_A           61 RLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELC-  139 (311)
T ss_dssp             EEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC-
T ss_pred             eeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEEecc-
Confidence            3568999999999999975 78999999986541    12233344444444 48999999999999999999999999 


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                      +|+|.+++....    ..++|..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....   
T Consensus       140 ~~~L~~~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~  212 (311)
T 3p1a_A          140 GPSLQQHCEAWG----ASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGA  212 (311)
T ss_dssp             CCBHHHHHHHHC----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCTTCEECC----
T ss_pred             CCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccceeeeecccCCC
Confidence            679998887543    2589999999999999999999954   599999999999999999999999999877643   


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                        ...+|..|+|||++.        ..++.++|||||||++|||++|..|+...    ..|..... .     ...+.. 
T Consensus       213 ~~~~~gt~~y~aPE~~~--------~~~~~~~DiwslG~il~el~~g~~~~~~~----~~~~~~~~-~-----~~~~~~-  273 (311)
T 3p1a_A          213 GEVQEGDPRYMAPELLQ--------GSYGTAADVFSLGLTILEVACNMELPHGG----EGWQQLRQ-G-----YLPPEF-  273 (311)
T ss_dssp             --CCCCCGGGCCGGGGG--------TCCSTHHHHHHHHHHHHHHHHTCCCCSSH----HHHHHHTT-T-----CCCHHH-
T ss_pred             CcccCCCccccCHhHhc--------CCCCchhhHHHHHHHHHHHHhCCCCCCCc----cHHHHHhc-c-----CCCccc-
Confidence              234688999999652        25778999999999999999997665431    11111111 0     001111 


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                          ......++.+++..||+.||++|||+.|+++
T Consensus       274 ----~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  304 (311)
T 3p1a_A          274 ----TAGLSSELRSVLVMMLEPDPKLRATAEALLA  304 (311)
T ss_dssp             ----HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             ----ccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence                1112345777888899999999999999875

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=3.4e-39  Score=338.70  Aligned_cols=230  Identities=20%  Similarity=0.288  Sum_probs=182.5

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ..++||+|+||.||+|+.. +++.||||+++..     ...+.+..|.+++..+ +||||+++++++...+..|+||||+
T Consensus        27 ~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lv~E~~  106 (353)
T 3txo_A           27 FIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFVMEFV  106 (353)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             EEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEEEEeCC
Confidence            3578999999999999965 5889999999754     2334567788888877 7999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC---
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH---  486 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~---  486 (640)
                      ++|+|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...   
T Consensus       107 ~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~  178 (353)
T 3txo_A          107 NGGDLMFHIQKSR-----RFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNG  178 (353)
T ss_dssp             CSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC--
T ss_pred             CCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEccccceeecccCC
Confidence            9999999997643     588999999999999999999954   59999999999999999999999999988632   


Q ss_pred             ---CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchh
Q 006559          487 ---TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       487 ---~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                         ....+|..|+|||++       ....++.++|||||||++|||+||+.||......  ...+.....         .
T Consensus       179 ~~~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~--~~~~~i~~~---------~  240 (353)
T 3txo_A          179 VTTATFCGTPDYIAPEIL-------QEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENED--DLFEAILND---------E  240 (353)
T ss_dssp             -------CCGGGCCHHHH-------HHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHC---------C
T ss_pred             ccccccCCCcCeEChhhc-------CCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHH--HHHHHHHcC---------C
Confidence               234578999999975       3345778999999999999999999999754321  111111111         1


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCH
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNM  595 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~  595 (640)
                      ...+....   .++.+++..|++.||++||++
T Consensus       241 ~~~p~~~~---~~~~~li~~lL~~dP~~R~~~  269 (353)
T 3txo_A          241 VVYPTWLH---EDATGILKSFMTKNPTMRLGS  269 (353)
T ss_dssp             CCCCTTSC---HHHHHHHHHHTCSSGGGSTTS
T ss_pred             CCCCCCCC---HHHHHHHHHHhhhCHHHccCC
Confidence            11111122   235667788999999999998

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=1.4e-38  Score=358.70  Aligned_cols=240  Identities=23%  Similarity=0.303  Sum_probs=191.2

Q ss_pred             ccccccCcceEEEEEeC---CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKGCVGATYKVVLD---GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~---~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      +.||+|+||.||+|.+.   .+..||||+++...    ..+++.+|++++++++|||||+++++|.. +..++|||||++
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~  453 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL  453 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence            47999999999999753   45789999997642    24678999999999999999999999974 568999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---  488 (640)
                      |+|.+++....     .+++..+..++.||+.||+|||+.   +||||||||+|||++.++.+||+|||+++.+...   
T Consensus       454 g~L~~~l~~~~-----~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~  525 (635)
T 4fl3_A          454 GPLNKYLQQNR-----HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY  525 (635)
T ss_dssp             EEHHHHHHHCT-----TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC----
T ss_pred             CCHHHHHhhCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccc
Confidence            99999997543     589999999999999999999954   5999999999999999999999999999865421   


Q ss_pred             ------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccc
Q 006559          489 ------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFD  561 (640)
Q Consensus       489 ------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  561 (640)
                            ..++..|+|||++       ....++.++|||||||++|||+| |+.||......  +..+........     
T Consensus       526 ~~~~~~~~~t~~y~APE~~-------~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--~~~~~i~~~~~~-----  591 (635)
T 4fl3_A          526 YKAQTHGKWPVKWYAPECI-------NYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAMLEKGERM-----  591 (635)
T ss_dssp             ---------CGGGSCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHTTCCC-----
T ss_pred             cccccCCCCceeeeChhhh-------cCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCCCC-----
Confidence                  1235679999964       44567889999999999999999 99999754322  111221111100     


Q ss_pred             hhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       562 ~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                         ..+.   ....++.+++..||+.||++||++.+|++.|+++..
T Consensus       592 ---~~p~---~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~  631 (635)
T 4fl3_A          592 ---GCPA---GCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYY  631 (635)
T ss_dssp             ---CCCT---TCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             ---CCCC---CCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence               0111   123456778888999999999999999999999764

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9.2e-39  Score=334.67  Aligned_cols=250  Identities=20%  Similarity=0.288  Sum_probs=192.8

Q ss_pred             hhccccccCcceEEEEEe------CCCcEEEEEEeccc---cchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEE
Q 006559          337 SAELLGKGCVGATYKVVL------DGGDVVVVKRIRER---KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVY  406 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~------~~~~~vavK~l~~~---~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~  406 (640)
                      ..+.||+|+||.||+|+.      ..+..||||.+...   ...+.+.+|+++++++ +||||+++++++...+..++||
T Consensus        49 ~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~  128 (344)
T 1rjb_A           49 FGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIF  128 (344)
T ss_dssp             EEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             eeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCccEEEE
Confidence            357899999999999995      23557999999754   2346788999999999 8999999999999999999999


Q ss_pred             eccCCCCHHHhhccCCCC------------------CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE
Q 006559          407 DYLPHGSLHSLLHGSRGP------------------GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV  468 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~------------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl  468 (640)
                      ||+++|+|.+++......                  ....+++..++.++.|++.||+|||+   .+|+||||||+|||+
T Consensus       129 e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll  205 (344)
T 1rjb_A          129 EYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF---KSCVHRDLAARNVLV  205 (344)
T ss_dssp             ECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHH---TTEEETTCSGGGEEE
T ss_pred             ecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChhhEEE
Confidence            999999999999765321                  01247899999999999999999995   459999999999999


Q ss_pred             CCCCCeEEccCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 006559          469 DQLGNACISDIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDG  539 (640)
Q Consensus       469 ~~~~~~kl~DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~  539 (640)
                      +.++.+||+|||+++.....        ..++..|+|||++       ....++.++|||||||++|||+| |+.||...
T Consensus       206 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~-------~~~~~~~~~Di~slG~il~el~t~g~~p~~~~  278 (344)
T 1rjb_A          206 THGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESL-------FEGIYTIKSDVWSYGILLWEIFSLGVNPYPGI  278 (344)
T ss_dssp             ETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             cCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHh-------ccCCCChhHhHHHHHHHHHHHHcCCCCCcccC
Confidence            99999999999999765321        2235679999965       33457789999999999999998 99999754


Q ss_pred             CcchHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          540 ELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ...... .+...... .     .  ..+..   ...++.+++..||+.||++|||+.++++.|+.+...
T Consensus       279 ~~~~~~-~~~~~~~~-~-----~--~~~~~---~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~  335 (344)
T 1rjb_A          279 PVDANF-YKLIQNGF-K-----M--DQPFY---ATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLAD  335 (344)
T ss_dssp             CCSHHH-HHHHHTTC-C-----C--CCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred             CcHHHH-HHHHhcCC-C-----C--CCCCC---CCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence            322111 11111100 0     0  00111   123466788889999999999999999999998755

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=3.1e-38  Score=330.20  Aligned_cols=260  Identities=26%  Similarity=0.352  Sum_probs=197.0

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhc--cCCCcccceeEEEEcCC----eEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGG--LRHSNIVSIRAYCNGKD----ELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~--l~H~niv~l~~~~~~~~----~~~lV~Ey~~  410 (640)
                      ..+.||+|+||.||+|+.. ++.||||.+... ..+.+..|.+++..  ++||||+++++++...+    ..++||||++
T Consensus        46 ~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~-~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~  123 (342)
T 1b6c_B           46 LQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR-EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHE  123 (342)
T ss_dssp             EEEEEEEETTEEEEEEEET-TEEEEEEEECGG-GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEEEECCCT
T ss_pred             EEeeecCCCCcEEEEEEEc-CccEEEEEeCch-hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEEEEeecC
Confidence            3578999999999999984 889999998754 34456677777765  79999999999998775    8999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCC-----CCCceecCCCCCCeEECCCCCeEEccCCccccc
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN-----KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF  485 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~  485 (640)
                      +|+|.+++...      .+++..++.++.|++.||+|||...     ..+|+||||||+|||++.++.+||+|||+++..
T Consensus       124 ~g~L~~~l~~~------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~  197 (342)
T 1b6c_B          124 HGSLFDYLNRY------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH  197 (342)
T ss_dssp             TCBHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECCCTTCEEE
T ss_pred             CCcHHHHHhcc------CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEECCCceec
Confidence            99999999753      4889999999999999999999321     345999999999999999999999999998765


Q ss_pred             CC----------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhC----------CCCCCCCC---cc
Q 006559          486 HT----------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG----------KMAKGDGE---LG  542 (640)
Q Consensus       486 ~~----------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg----------~~p~~~~~---~~  542 (640)
                      ..          ...++..|+|||++...... ....++.++|||||||++|||+||          +.||....   ..
T Consensus       198 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~  276 (342)
T 1b6c_B          198 DSATDTIDIAPNHRVGTKRYMAPEVLDDSINM-KHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPS  276 (342)
T ss_dssp             ETTTTEEEECCCSCCCCGGGCCHHHHTSCCCT-TCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred             cccccccccccccCCcCcccCCHhhhcccccc-cccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCccc
Confidence            32          22468899999986433211 011234689999999999999999          67876421   12


Q ss_pred             hHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 006559          543 IVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGS  610 (640)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~  610 (640)
                      ...+.+......     ..+.+.......+....+.+++.+||+.||++|||+.+|++.|+++..+..
T Consensus       277 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~~~  339 (342)
T 1b6c_B          277 VEEMRKVVCEQK-----LRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEG  339 (342)
T ss_dssp             HHHHHHHHTTSC-----CCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHH-----hCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHHhc
Confidence            223332222111     011111000112455678889999999999999999999999999987654

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.5e-38  Score=331.73  Aligned_cols=244  Identities=20%  Similarity=0.340  Sum_probs=189.9

Q ss_pred             hccccccCcceEEEEEeCC-----CcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVLDG-----GDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-----~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .+.||+|+||.||+|+...     +..||||.++...   ....+.+|++++++++||||+++++++...+..++||||+
T Consensus        49 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  128 (333)
T 1mqb_A           49 QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYM  128 (333)
T ss_dssp             EEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred             ccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEEEEeCC
Confidence            5789999999999998643     2359999997642   3456788999999999999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-  488 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-  488 (640)
                      ++|+|.+++....    ..+++..++.++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++..... 
T Consensus       129 ~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~  201 (333)
T 1mqb_A          129 ENGALDKFLREKD----GEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP  201 (333)
T ss_dssp             TTEEHHHHHHHTT----TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC--------
T ss_pred             CCCcHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECCCCcchhhcccc
Confidence            9999999997643    2588999999999999999999954   5999999999999999999999999999875421 


Q ss_pred             --------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccc
Q 006559          489 --------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       489 --------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  559 (640)
                              ...+..|+|||++       ....++.++|||||||++|||+| |+.||......  ...+.......    
T Consensus       202 ~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~--~~~~~~~~~~~----  268 (333)
T 1mqb_A          202 EATYTTSGGKIPIRWTAPEAI-------SYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH--EVMKAINDGFR----  268 (333)
T ss_dssp             ---------CCCGGGSCHHHH-------HSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHTTCC----
T ss_pred             ccccccCCCCccccccCchhc-------ccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHH--HHHHHHHCCCc----
Confidence                    1235679999965       34567789999999999999999 99999753321  11222111100    


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                          .....   .....+.+++.+||+.||++||++.++++.|+++...
T Consensus       269 ----~~~~~---~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~  310 (333)
T 1mqb_A          269 ----LPTPM---DCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA  310 (333)
T ss_dssp             ----CCCCT---TCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             ----CCCcc---cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence                00111   1223467788889999999999999999999998754

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=2.1e-38  Score=324.15  Aligned_cols=249  Identities=18%  Similarity=0.276  Sum_probs=184.2

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||+||+|+.. +++.||||++....    ..+.+.+|++++++++||||+++++++...+..++||||+++ 
T Consensus         7 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-   85 (292)
T 3o0g_A            7 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ-   85 (292)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSE-
T ss_pred             eeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEecCCC-
Confidence            467999999999999964 58899999997542    235677899999999999999999999999999999999986 


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      ++.+++....    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....     
T Consensus        86 ~l~~~~~~~~----~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  158 (292)
T 3o0g_A           86 DLKKYFDSCN----GDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCY  158 (292)
T ss_dssp             EHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSCC
T ss_pred             CHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecCCccccc
Confidence            5655554432    2589999999999999999999954   599999999999999999999999999987642     


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchH---HHHHHhhcc-cccccccch
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIV---KWVQMMGQD-ESAWEVFDF  562 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~---~~~~~~~~~-~~~~~~~d~  562 (640)
                       ...+|..|+|||++.+      ...++.++|||||||++|||+||..|+........   ...+..... ...+.....
T Consensus       159 ~~~~~t~~y~aPE~~~~------~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  232 (292)
T 3o0g_A          159 SAEVVTLWYRPPDVLFG------AKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTK  232 (292)
T ss_dssp             CSCCSCGGGCCHHHHTT------CSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGG
T ss_pred             cCCccccCCcChHHHcC------CCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcc
Confidence             2345888999997532      23467899999999999999999888643222111   111111111 000000000


Q ss_pred             ------------hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          563 ------------ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       563 ------------~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                                  .............++.+++.+|++.||++|||+.|+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  282 (292)
T 3o0g_A          233 LPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             STTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence                        00000000112234667888899999999999999875

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=8.6e-39  Score=335.33  Aligned_cols=240  Identities=23%  Similarity=0.376  Sum_probs=188.4

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..+.||+|+||.||+|+. .+++.||||++....     ..+.+.+|++++++++||||+++++++...+..++||||++
T Consensus        58 ~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~  137 (348)
T 1u5q_A           58 DLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCL  137 (348)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred             eeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEEecCC
Confidence            346799999999999995 578899999986431     23567889999999999999999999999999999999997


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--C
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--P  488 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--~  488 (640)
                       |+|.+++....    .++++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....  .
T Consensus       138 -g~l~~~l~~~~----~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~  209 (348)
T 1u5q_A          138 -GSASDLLEVHK----KPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANS  209 (348)
T ss_dssp             -EEHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSBCC
T ss_pred             -CCHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeeccCceecCCCCc
Confidence             68888875432    2589999999999999999999954   599999999999999999999999999987653  3


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..+|..|+|||++...    ....++.++|||||||++|||+||+.||.....  .............      .. ...
T Consensus       210 ~~gt~~y~aPE~~~~~----~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~--~~~~~~~~~~~~~------~~-~~~  276 (348)
T 1u5q_A          210 FVGTPYWMAPEVILAM----DEGQYDGKVDVWSLGITCIELAERKPPLFNMNA--MSALYHIAQNESP------AL-QSG  276 (348)
T ss_dssp             CCSCGGGCCHHHHHTT----SSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHSCCC------CC-CCT
T ss_pred             ccCCcceeCHhhhccc----cCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHhcCCC------CC-CCC
Confidence            4578899999976321    234678899999999999999999999975322  1212111111100      00 011


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..   ...+.+++..||+.||++|||+.++++
T Consensus       277 ~~---~~~l~~li~~~l~~dP~~Rps~~~ll~  305 (348)
T 1u5q_A          277 HW---SEYFRNFVDSCLQKIPQDRPTSEVLLK  305 (348)
T ss_dssp             TS---CHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CC---CHHHHHHHHHHcccChhhCcCHHHHhh
Confidence            11   224566778899999999999999975

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=3.8e-39  Score=328.92  Aligned_cols=246  Identities=22%  Similarity=0.289  Sum_probs=190.1

Q ss_pred             hhccccccCcceEEEEEeCC-C-------cEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEE
Q 006559          337 SAELLGKGCVGATYKVVLDG-G-------DVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVY  406 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~-~-------~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~  406 (640)
                      ..+.||+|+||.||+|+... +       ..||+|.+...  ...+.+.+|++++++++||||+++++++...+..++||
T Consensus        12 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   91 (289)
T 4fvq_A           12 FNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQ   91 (289)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCCEEEE
T ss_pred             eeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCCEEEE
Confidence            35789999999999998543 3       46999998654  34567889999999999999999999999999999999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC--------eEEcc
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN--------ACISD  478 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~--------~kl~D  478 (640)
                      ||+++|+|.+++....    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.        +||+|
T Consensus        92 e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~D  164 (289)
T 4fvq_A           92 EFVKFGSLDTYLKKNK----NCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNPPFIKLSD  164 (289)
T ss_dssp             ECCTTCBHHHHHHHTG----GGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGGGTBCCEEEECC
T ss_pred             ECCCCCCHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCcccccccceeeecc
Confidence            9999999999998643    2488999999999999999999954   5999999999999998887        99999


Q ss_pred             CCcccccCCC--ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCC-CCCCCCcchHHHHHHhhcccc
Q 006559          479 IGVHQLFHTP--FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM-AKGDGELGIVKWVQMMGQDES  555 (640)
Q Consensus       479 fGl~~~~~~~--~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~-p~~~~~~~~~~~~~~~~~~~~  555 (640)
                      ||+++.....  ..++..|+|||++..      ...++.++|||||||++|||+||.. |+......  ...........
T Consensus       165 fg~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~--~~~~~~~~~~~  236 (289)
T 4fvq_A          165 PGISITVLPKDILQERIPWVPPECIEN------PKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQ--RKLQFYEDRHQ  236 (289)
T ss_dssp             CCSCTTTSCHHHHHHTTTTSCHHHHHC------GGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH--HHHHHHHTTCC
T ss_pred             CcccccccCccccCCcCcccCHHHhCC------CCCCCchhHHHHHHHHHHHHHcCCCCCccccchH--HHHHHhhccCC
Confidence            9998766432  235778999997532      2457789999999999999999654 44432211  11111111100


Q ss_pred             cccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 006559          556 AWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGS  610 (640)
Q Consensus       556 ~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~  610 (640)
                      .          +...   ..++.+++..||+.||++|||+.++++.|+++.....
T Consensus       237 ~----------~~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p~~  278 (289)
T 4fvq_A          237 L----------PAPK---AAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDL  278 (289)
T ss_dssp             C----------CCCS---SCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC----
T ss_pred             C----------CCCC---CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCC
Confidence            0          0000   1235677888999999999999999999999886543

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=3.2e-39  Score=334.51  Aligned_cols=256  Identities=22%  Similarity=0.338  Sum_probs=194.2

Q ss_pred             hhccccccCcceEEEEEeC-----CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEc--CCeEEEEE
Q 006559          337 SAELLGKGCVGATYKVVLD-----GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNG--KDELFLVY  406 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-----~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~--~~~~~lV~  406 (640)
                      ..+.||+|+||.||++.+.     +++.||||+++...   ..+.+.+|++++++++||||+++++++..  ....++||
T Consensus        35 ~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~  114 (318)
T 3lxp_A           35 KIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVM  114 (318)
T ss_dssp             EEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEEEE
T ss_pred             hhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEEEE
Confidence            3578999999999998753     57889999998653   24568899999999999999999999987  46789999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||+++|+|.+++...      .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus       115 e~~~~~~L~~~l~~~------~~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~  185 (318)
T 3lxp_A          115 EYVPLGSLRDYLPRH------SIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVP  185 (318)
T ss_dssp             CCCTTCBHHHHGGGS------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECC
T ss_pred             ecccCCcHHHHHhhC------CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCcccccccc
Confidence            999999999999754      388999999999999999999954   59999999999999999999999999998764


Q ss_pred             CC---------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcc---c
Q 006559          487 TP---------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQD---E  554 (640)
Q Consensus       487 ~~---------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~---~  554 (640)
                      ..         ..++..|+|||++       ....++.++|||||||++|||+||+.||.........+.......   .
T Consensus       186 ~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~  258 (318)
T 3lxp_A          186 EGHEYYRVREDGDSPVFWYAPECL-------KEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVL  258 (318)
T ss_dssp             TTCSEEEC---CCCCGGGCCHHHH-------HHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHH
T ss_pred             ccccccccccCCCCCceeeChHHh-------cCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHH
Confidence            32         2346679999965       334566899999999999999999999864221111110000000   0


Q ss_pred             ccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 006559          555 SAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG  609 (640)
Q Consensus       555 ~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~  609 (640)
                      ...+..+..... +.......++.+++..||+.||++|||+.++++.|+++..+.
T Consensus       259 ~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~  312 (318)
T 3lxp_A          259 RLTELLERGERL-PRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKY  312 (318)
T ss_dssp             HHHHHHHTTCCC-CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCC-CCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhh
Confidence            000000000000 000122345777888999999999999999999999997653

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=1.8e-38  Score=333.01  Aligned_cols=234  Identities=16%  Similarity=0.234  Sum_probs=189.1

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+.. +|+.||||.+...     ...+.+.+|+++++.++||||+++++++.+.+..|+||||+++
T Consensus        46 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g  125 (350)
T 1rdq_E           46 IKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAG  125 (350)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred             EEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCC
Confidence            568999999999999965 6889999998654     2345677899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---C
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---P  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---~  488 (640)
                      |+|.+++....     .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....   .
T Consensus       126 g~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~~~  197 (350)
T 1rdq_E          126 GEMFSHLRRIG-----RFSEPHARFYAAQIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWT  197 (350)
T ss_dssp             CBHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCC
T ss_pred             CcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCcccccCccceEEECCCCCEEEcccccceeccCCccc
Confidence            99999997543     48899999999999999999995   4599999999999999999999999999987653   3


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..+|..|+|||++.       ...++.++|||||||++|||++|+.||.....  ....+.....         ....+.
T Consensus       198 ~~gt~~y~aPE~~~-------~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~~~~~~i~~~---------~~~~p~  259 (350)
T 1rdq_E          198 LCGTPEALAPEIIL-------SKGYNKAVDWWALGVLIYEMAAGYPPFFADQP--IQIYEKIVSG---------KVRFPS  259 (350)
T ss_dssp             CEECGGGCCHHHHT-------TCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHC---------CCCCCT
T ss_pred             ccCCccccCHHHhc-------CCCCCCcCCEecccHhHhHHhhCCCCCCCCCH--HHHHHHHHcC---------CCCCCC
Confidence            45689999999753       34577899999999999999999999975432  2222221111         111111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPN-----MSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs-----~~~v~~  600 (640)
                      ..   ..++.+++.+||+.||++||+     +.++.+
T Consensus       260 ~~---~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~  293 (350)
T 1rdq_E          260 HF---SSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             TC---CHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             CC---CHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence            12   234667778899999999998     777753

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=3.4e-39  Score=331.42  Aligned_cols=250  Identities=24%  Similarity=0.378  Sum_probs=190.1

Q ss_pred             hhccccccCcceEEEEEe-----CCCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcC--CeEEEEE
Q 006559          337 SAELLGKGCVGATYKVVL-----DGGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGK--DELFLVY  406 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-----~~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lV~  406 (640)
                      ..+.||+|+||.||+|++     .+++.||||++...   ...+.+.+|++++++++||||+++++++...  ...++||
T Consensus        25 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~  104 (302)
T 4e5w_A           25 RIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIM  104 (302)
T ss_dssp             EEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCEEEEE
T ss_pred             hhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceEEEEE
Confidence            357899999999999984     35788999998754   2346788999999999999999999999876  6789999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||+++|+|.+++....    ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++...
T Consensus       105 e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~  177 (302)
T 4e5w_A          105 EFLPSGSLKEYLPKNK----NKINLKQQLKYAVQICKGMDYLGS---RQYVHRDLAARNVLVESEHQVKIGDFGLTKAIE  177 (302)
T ss_dssp             ECCTTCBHHHHHHHHT----TTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred             EeCCCCcHHHHHHhcc----ccCCHHHHHHHHHHHHHHHHHhhc---CCcccCCCchheEEEcCCCCEEECccccccccc
Confidence            9999999999996543    248899999999999999999995   459999999999999999999999999998754


Q ss_pred             CC---------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccc
Q 006559          487 TP---------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAW  557 (640)
Q Consensus       487 ~~---------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  557 (640)
                      ..         ..++..|+|||++       ....++.++|||||||++|||+||+.|+....   ..+...........
T Consensus       178 ~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~---~~~~~~~~~~~~~~  247 (302)
T 4e5w_A          178 TDKEYYTVKDDRDSPVFWYAPECL-------MQSKFYIASDVWSFGVTLHELLTYCDSDSSPM---ALFLKMIGPTHGQM  247 (302)
T ss_dssp             TTCCEEECCCCTTCCGGGCCHHHH-------HHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH---HHHHHHHCSCCGGG
T ss_pred             CCCcceeccCCCCCCccccCCeee-------cCCCCCcchhHHHHHHHHHHHHHccCCCcchh---hHHhhccCCccccc
Confidence            32         2346679999964       33456689999999999999999999864211   11111111100000


Q ss_pred             ---cc---cch--hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          558 ---EV---FDF--ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       558 ---~~---~d~--~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                         .+   ...  ......   ....++.+++..||+.||++|||+.++++.|+++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll  301 (302)
T 4e5w_A          248 TVTRLVNTLKEGKRLPCPP---NCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL  301 (302)
T ss_dssp             HHHHHHHHHHTTCCCCCCT---TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhccCCCCCCC---CCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence               00   000  000111   12245777888899999999999999999999875

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=1.9e-38  Score=328.56  Aligned_cols=259  Identities=21%  Similarity=0.335  Sum_probs=183.7

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||.||+|+.. +++.||||+++..   ...+.+.+|++++++++||||+++++++...+..++||||++ |+
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~-~~   88 (317)
T 2pmi_A           10 LEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFEFMD-ND   88 (317)
T ss_dssp             ---------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEECCC-CB
T ss_pred             eeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEEecC-CC
Confidence            567999999999999854 5889999998754   234678889999999999999999999999999999999998 69


Q ss_pred             HHHhhccCC-CCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          414 LHSLLHGSR-GPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       414 L~~~l~~~~-~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      |.+++.... ......+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....     
T Consensus        89 L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~  165 (317)
T 2pmi_A           89 LKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHE---NKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTF  165 (317)
T ss_dssp             HHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCSSCEETTSCCCCC
T ss_pred             HHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCChHHeEEcCCCCEEECcCccceecCCCcccC
Confidence            999886432 1112358899999999999999999995   4599999999999999999999999999987542     


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHH-HHHhhcc-ccccccc---
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKW-VQMMGQD-ESAWEVF---  560 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~-~~~~~~~-~~~~~~~---  560 (640)
                       ...+|..|+|||++.+      ...++.++|||||||++|||+||+.||...... .... .+..... ...+...   
T Consensus       166 ~~~~~t~~y~aPE~~~~------~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  239 (317)
T 2pmi_A          166 SSEVVTLWYRAPDVLMG------SRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKL  239 (317)
T ss_dssp             CCCCSCCTTCCHHHHTT------CCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGGC
T ss_pred             CCCcccccccCchHhhC------CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhhh
Confidence             2345889999997532      235678999999999999999999999754321 1111 1111110 0011000   


Q ss_pred             ---chhhc--cChHH---------HHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhh
Q 006559          561 ---DFELI--MDKEM---------EEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDIR  606 (640)
Q Consensus       561 ---d~~~~--~~~~~---------~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i~  606 (640)
                         .+...  .....         .....++.+++.+||+.||++|||+.|+++  .+.+..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~  301 (317)
T 2pmi_A          240 PKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHHPWFAEYY  301 (317)
T ss_dssp             TTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGC
T ss_pred             hhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCChhhhccc
Confidence               00000  00000         011235778888999999999999999865  344443

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=1.2e-38  Score=325.55  Aligned_cols=249  Identities=23%  Similarity=0.366  Sum_probs=184.7

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ..+.||+|+||.||+|+..+  .||||.++...    ..+.+.+|++++++++||||+++++++ ..+..++||||++++
T Consensus        28 ~~~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e~~~~~  104 (289)
T 3og7_A           28 VGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQWCEGS  104 (289)
T ss_dssp             EEEEEEECSSEEEEEEESSS--EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEECCCEE
T ss_pred             eeeEecCCCCeEEEEEEEcC--ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEEecCCC
Confidence            35789999999999998654  59999987542    235688899999999999999999965 456789999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      +|.+++....    ..+++..++.++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....     
T Consensus       105 ~L~~~l~~~~----~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  177 (289)
T 3og7_A          105 SLYHHLHASE----TKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSH  177 (289)
T ss_dssp             EHHHHHTTC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC------------
T ss_pred             cHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccceeccccccccccc
Confidence            9999997543    2589999999999999999999954   599999999999999999999999999876432     


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         ...++..|+|||++..    .....++.++|||||||++|||+||+.||...... ....+.........   +...
T Consensus       178 ~~~~~~gt~~y~aPE~~~~----~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-~~~~~~~~~~~~~~---~~~~  249 (289)
T 3og7_A          178 QFEQLSGSILWMAPEVIRM----QDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR-DQIIEMVGRGSLSP---DLSK  249 (289)
T ss_dssp             ------CCCTTCCHHHHC--------CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCH-HHHHHHHHHTSCCC---CTTS
T ss_pred             cccccCCCccccCchhhcc----cCCCCCCcccchHHHHHHHHHHHHCCCCccccchH-HHHHHHhcccccCc---chhh
Confidence               2345889999997531    12345678999999999999999999999753221 11111111111000   0000


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                       ..   .....++.+++..||+.||++|||+.++++.|+++..
T Consensus       250 -~~---~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~  288 (289)
T 3og7_A          250 -VR---SNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR  288 (289)
T ss_dssp             -SC---TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             -cc---ccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence             00   1223457778888999999999999999999999864

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=2.9e-38  Score=325.93  Aligned_cols=255  Identities=17%  Similarity=0.303  Sum_probs=190.8

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..+.||+|+||.||+|.. .++..||||+++..     ...+.+.+|++++++++||||+++++++...+..++||||++
T Consensus        36 ~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~  115 (310)
T 2wqm_A           36 IEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELAD  115 (310)
T ss_dssp             EEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCC
T ss_pred             EEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEEecCC
Confidence            357899999999999995 56889999998742     234567889999999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                      +|+|.+++..... ....+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....   
T Consensus       116 ~~~L~~~l~~~~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~~  191 (310)
T 2wqm_A          116 AGDLSRMIKHFKK-QKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT  191 (310)
T ss_dssp             SCBHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC-----------
T ss_pred             CCCHHHHHHHhcc-cccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEeccceeeecCCCc
Confidence            9999999864211 112588999999999999999999954   599999999999999999999999999876542   


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         ...++..|+|||++.       ...++.++|||||||++|||+||+.||...........+........      ..
T Consensus       192 ~~~~~~~~~~y~aPE~~~-------~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~------~~  258 (310)
T 2wqm_A          192 AAHSLVGTPYYMSPERIH-------ENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYP------PL  258 (310)
T ss_dssp             -------CCSSCCHHHHT-------TCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTTCSC------CC
T ss_pred             cccccCCCeeEeChHHhC-------CCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhcccCC------CC
Confidence               234578899999653       34577899999999999999999999976544444443333221110      00


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCCCC
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSID  612 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~~~  612 (640)
                       ....   ...++.+++..||+.||++|||+.+|++.|+++......+
T Consensus       259 -~~~~---~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~~~  302 (310)
T 2wqm_A          259 -PSDH---YSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTASS  302 (310)
T ss_dssp             -CTTT---SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC--
T ss_pred             -cccc---cCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhhhh
Confidence             0011   1234667788899999999999999999999998765543

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=5.4e-38  Score=321.94  Aligned_cols=244  Identities=22%  Similarity=0.326  Sum_probs=188.5

Q ss_pred             hhccccccCcceEEEEEeCCC----cEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEc-CCeEEEEEec
Q 006559          337 SAELLGKGCVGATYKVVLDGG----DVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNG-KDELFLVYDY  408 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~----~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~-~~~~~lV~Ey  408 (640)
                      ..++||+|+||.||+|+..+.    ..||+|.+....   ..+.+.+|++++++++||||+++++++.. .+..++||||
T Consensus        29 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~  108 (298)
T 3f66_A           29 FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPY  108 (298)
T ss_dssp             EEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEEEC
T ss_pred             hcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEEEEeC
Confidence            357899999999999986432    258999987543   23567889999999999999999999754 5678999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP  488 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~  488 (640)
                      +++|+|.+++....    ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus       109 ~~~~~L~~~l~~~~----~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~  181 (298)
T 3f66_A          109 MKHGDLRNFIRNET----HNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK  181 (298)
T ss_dssp             CTTCBHHHHHHCTT----CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCG
T ss_pred             CCCCCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECccccccccccc
Confidence            99999999997543    2578999999999999999999954   5999999999999999999999999999765321


Q ss_pred             ----------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCc-chHHHHHHhhccccc
Q 006559          489 ----------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGEL-GIVKWVQMMGQDESA  556 (640)
Q Consensus       489 ----------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~-~~~~~~~~~~~~~~~  556 (640)
                                ..++..|+|||++       ....++.++|||||||++|||+| |.+||..... ......   ......
T Consensus       182 ~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~  251 (298)
T 3f66_A          182 EYYSVHNKTGAKLPVKWMALESL-------QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYL---LQGRRL  251 (298)
T ss_dssp             GGCBC-----CCBCGGGSCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHHHH---HTTCCC
T ss_pred             chhccccccCCCCCccccChHHh-------cCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHHHH---hcCCCC
Confidence                      2335679999964       34567789999999999999999 5566654322 111111   111000


Q ss_pred             ccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          557 WEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       557 ~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                         .     .+...   ...+.+++..||+.||++|||+.++++.|+++...
T Consensus       252 ---~-----~~~~~---~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~  292 (298)
T 3f66_A          252 ---L-----QPEYC---PDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFST  292 (298)
T ss_dssp             ---C-----CCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             ---C-----CCccC---CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence               0     01111   23467788889999999999999999999998764

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=1.5e-38  Score=331.78  Aligned_cols=249  Identities=20%  Similarity=0.360  Sum_probs=194.5

Q ss_pred             hhccccccCcceEEEEEeC--------CCcEEEEEEecccc---chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEE
Q 006559          337 SAELLGKGCVGATYKVVLD--------GGDVVVVKRIRERK---KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFL  404 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~--------~~~~vavK~l~~~~---~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  404 (640)
                      ..+.||+|+||.||+|+..        ++..||||+++...   ..+.+.+|+++++++ +||||+++++++...+..++
T Consensus        39 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l  118 (334)
T 2pvf_A           39 LGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYV  118 (334)
T ss_dssp             EEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCCEE
T ss_pred             EeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccCCceEE
Confidence            3578999999999999863        46789999997653   235677899999999 89999999999999999999


Q ss_pred             EEeccCCCCHHHhhccCCCCC-----------CCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC
Q 006559          405 VYDYLPHGSLHSLLHGSRGPG-----------RMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN  473 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~~~~-----------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~  473 (640)
                      ||||+++|+|.+++......+           ...+++..++.++.|++.||+|||+.   +|+||||||+|||++.++.
T Consensus       119 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~  195 (334)
T 2pvf_A          119 IVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNV  195 (334)
T ss_dssp             EEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCC
T ss_pred             EEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCccceEEEcCCCC
Confidence            999999999999998654211           12488999999999999999999954   5999999999999999999


Q ss_pred             eEEccCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchH
Q 006559          474 ACISDIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIV  544 (640)
Q Consensus       474 ~kl~DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~  544 (640)
                      +||+|||+++.....        ...+..|+|||++.       ...++.++|||||||++|||+| |+.||......  
T Consensus       196 ~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-------~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--  266 (334)
T 2pvf_A          196 MKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALF-------DRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVE--  266 (334)
T ss_dssp             EEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHH-------HCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--
T ss_pred             EEEccccccccccccccccccCCCCcccceeChHHhc-------CCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHH--
Confidence            999999999765432        23356799999653       3456789999999999999999 99999754322  


Q ss_pred             HHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          545 KWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       545 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ...+........        ....   ....++.+++..||+.||++||++.++++.|+++...
T Consensus       267 ~~~~~~~~~~~~--------~~~~---~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~  319 (334)
T 2pvf_A          267 ELFKLLKEGHRM--------DKPA---NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTL  319 (334)
T ss_dssp             HHHHHHHHTCCC--------CCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCC--------CCCc---cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence            222211111000        0011   1223467788889999999999999999999998754

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=2.3e-38  Score=321.47  Aligned_cols=245  Identities=25%  Similarity=0.411  Sum_probs=195.2

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ..+.||+|+||.||+|+..++..||||.+... ...+.+.+|++++++++||||+++++++. .+..++||||+++|+|.
T Consensus        17 ~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~L~   95 (279)
T 1qpc_A           17 LVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEYMENGSLV   95 (279)
T ss_dssp             EEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECCTTCBHH
T ss_pred             heeeecCCCCeEEEEEEEcCCcEEEEEEecCCcccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEecCCCCCHH
Confidence            35689999999999999988889999999765 34677889999999999999999999986 45689999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-------
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-------  488 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-------  488 (640)
                      +++....   ...+++..+..++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.....       
T Consensus        96 ~~l~~~~---~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~  169 (279)
T 1qpc_A           96 DFLKTPS---GIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREG  169 (279)
T ss_dssp             HHTTSHH---HHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTT
T ss_pred             HHHhcCC---CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcccccccCcccccccC
Confidence            9997432   12488999999999999999999954   5999999999999999999999999999876432       


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      ...+..|+|||++       ....++.++|||||||++|||+| |+.||.....  .+..+.......        ....
T Consensus       170 ~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~--~~~~~~~~~~~~--------~~~~  232 (279)
T 1qpc_A          170 AKFPIKWTAPEAI-------NYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTN--PEVIQNLERGYR--------MVRP  232 (279)
T ss_dssp             CCCCTTTSCHHHH-------HHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCH--HHHHHHHHTTCC--------CCCC
T ss_pred             CCCccCccChhhh-------ccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCH--HHHHHHHhcccC--------CCCc
Confidence            2235679999965       33456789999999999999999 8999975322  122222111100        0011


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ..   ...++.+++..||+.||++|||+.++++.|+++...
T Consensus       233 ~~---~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  270 (279)
T 1qpc_A          233 DN---CPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTA  270 (279)
T ss_dssp             TT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             cc---ccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHh
Confidence            11   123566788889999999999999999999998755

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.6e-38  Score=324.15  Aligned_cols=243  Identities=23%  Similarity=0.290  Sum_probs=192.7

Q ss_pred             ccccccCcceEEEEEeC---CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          339 ELLGKGCVGATYKVVLD---GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~---~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      +.||+|+||.||+|...   ++..||||.++...   ..+.+.+|++++++++||||+++++++. .+..++||||+++|
T Consensus        16 ~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~~~   94 (287)
T 1u59_A           16 IELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ-AEALMLVMEMAGGG   94 (287)
T ss_dssp             EEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEEEECCTTE
T ss_pred             ccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec-CCCcEEEEEeCCCC
Confidence            47999999999999853   57789999998642   3456888999999999999999999994 56799999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.+++....    ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....    
T Consensus        95 ~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~  167 (287)
T 1u59_A           95 PLHKFLVGKR----EEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYY  167 (287)
T ss_dssp             EHHHHHTTCT----TTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEE
T ss_pred             CHHHHHHhCC----ccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcccceeeeccCccee
Confidence            9999997543    2589999999999999999999954   5999999999999999999999999999876321    


Q ss_pred             -----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccch
Q 006559          489 -----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       489 -----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                           ..++..|+|||++       ....++.++|||||||++|||+| |+.||......  ...........       
T Consensus       168 ~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~i~~~~~-------  231 (287)
T 1u59_A          168 TARSAGKWPLKWYAPECI-------NFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFIEQGKR-------  231 (287)
T ss_dssp             CCCCSSCCCGGGCCHHHH-------HHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTH--HHHHHHHTTCC-------
T ss_pred             eccccccccccccCHHHh-------ccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHH--HHHHHHhcCCc-------
Confidence                 1236789999965       33456789999999999999999 99999753321  11111111100       


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG  609 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~  609 (640)
                       ...+.   ....++.+++..||+.||++||++.++++.|+++....
T Consensus       232 -~~~~~---~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~  274 (287)
T 1u59_A          232 -MECPP---ECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSL  274 (287)
T ss_dssp             -CCCCT---TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             -CCCCC---CcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence             00111   12235667888899999999999999999999987553

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=4.1e-38  Score=334.41  Aligned_cols=240  Identities=18%  Similarity=0.266  Sum_probs=189.8

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      ..+.||+|+||.||+|+.. ++..||+|.+...  .....+.+|++++++++||||+++++++...+..++||||+++|+
T Consensus        55 i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~~~gg~  134 (387)
T 1kob_A           55 ILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGE  134 (387)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCCB
T ss_pred             EEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEcCCCCc
Confidence            3568999999999999964 6889999998755  234568899999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC--CCCeEEccCCcccccCCC---
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ--LGNACISDIGVHQLFHTP---  488 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~--~~~~kl~DfGl~~~~~~~---  488 (640)
                      |.+++....    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.  ++.+||+|||+++.....   
T Consensus       135 L~~~l~~~~----~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~  207 (387)
T 1kob_A          135 LFDRIAAED----YKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIV  207 (387)
T ss_dssp             HHHHTTCTT----CCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCE
T ss_pred             HHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecccceecCCCcce
Confidence            999997543    2589999999999999999999954   5999999999999974  578999999999876532   


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                        ..+|..|+|||++.       ...++.++|||||||++|||+||+.||.....  .............   ++...  
T Consensus       208 ~~~~gt~~y~aPE~~~-------~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~--~~~~~~i~~~~~~---~~~~~--  273 (387)
T 1kob_A          208 KVTTATAEFAAPEIVD-------REPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD--LETLQNVKRCDWE---FDEDA--  273 (387)
T ss_dssp             EEECSSGGGCCHHHHT-------TCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH--HHHHHHHHHCCCC---CCSST--
T ss_pred             eeeccCCCccCchhcc-------CCCCCCcccEeeHhHHHHHHHhCCCCCCCCCH--HHHHHHHHhCCCC---CCccc--
Confidence              34688999999753       34567899999999999999999999975432  1222221111100   01000  


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                         ......++.+++..||+.||++|||+.++++
T Consensus       274 ---~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  304 (387)
T 1kob_A          274 ---FSSVSPEAKDFIKNLLQKEPRKRLTVHDALE  304 (387)
T ss_dssp             ---TTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             ---cccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence               0112234667888899999999999999875

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=1.7e-38  Score=337.52  Aligned_cols=233  Identities=17%  Similarity=0.259  Sum_probs=182.0

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ..++||+|+||.||+|+.. +++.||||+++...     ..+.+..|..++.++ +|||||++++++...+..|+||||+
T Consensus        56 ~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lV~E~~  135 (396)
T 4dc2_A           56 LLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYV  135 (396)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEEEEEcC
Confidence            3578999999999999965 57789999997542     223467788888776 8999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC---
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH---  486 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~---  486 (640)
                      ++|+|.+++....     .+++..+..++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++...   
T Consensus       136 ~gg~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~  207 (396)
T 4dc2_A          136 NGGDLMFHMQRQR-----KLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG  207 (396)
T ss_dssp             TTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT
T ss_pred             CCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEeecceeeecccCC
Confidence            9999999997543     589999999999999999999954   59999999999999999999999999998632   


Q ss_pred             ---CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc------hHHHHHHhhcccccc
Q 006559          487 ---TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG------IVKWVQMMGQDESAW  557 (640)
Q Consensus       487 ---~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~------~~~~~~~~~~~~~~~  557 (640)
                         ....+|..|+|||++.       ...++.++|||||||++|||++|+.||......      ...++..        
T Consensus       208 ~~~~~~~gt~~Y~aPE~l~-------~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~--------  272 (396)
T 4dc2_A          208 DTTSTFCGTPNYIAPEILR-------GEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQ--------  272 (396)
T ss_dssp             CCBCCCCBCGGGCCHHHHT-------TCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHH--------
T ss_pred             CccccccCCcccCCchhhc-------CCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHH--------
Confidence               2346789999999753       345778999999999999999999999632111      0111100        


Q ss_pred             cccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCH
Q 006559          558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNM  595 (640)
Q Consensus       558 ~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~  595 (640)
                      .+.......+...+   .++.+++..||+.||++||++
T Consensus       273 ~i~~~~~~~p~~~s---~~~~~li~~lL~~dP~~R~~~  307 (396)
T 4dc2_A          273 VILEKQIRIPRSLS---VKAASVLKSFLNKDPKERLGC  307 (396)
T ss_dssp             HHHHCCCCCCTTSC---HHHHHHHHHHTCSCTTTSTTC
T ss_pred             HHhccccCCCCcCC---HHHHHHHHHHhcCCHhHcCCC
Confidence            01111111112222   345677788999999999995

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=2.7e-38  Score=333.38  Aligned_cols=239  Identities=20%  Similarity=0.214  Sum_probs=181.2

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ..+.||+|+||.||+++.. +++.||||++... ...+.+.+|+.++++++||||+++++++...+..++||||+++|+|
T Consensus        24 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L  103 (361)
T 3uc3_A           24 FVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGEL  103 (361)
T ss_dssp             EEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBH
T ss_pred             EEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeCCCCCH
Confidence            3568999999999999965 6889999999765 3456788999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC--eEEccCCcccccC-----C
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN--ACISDIGVHQLFH-----T  487 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~--~kl~DfGl~~~~~-----~  487 (640)
                      .+++....     .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.  +||+|||+++...     .
T Consensus       104 ~~~l~~~~-----~~~~~~~~~i~~ql~~~L~~LH~---~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~~~  175 (361)
T 3uc3_A          104 YERICNAG-----RFSEDEARFFFQQLLSGVSYCHS---MQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPK  175 (361)
T ss_dssp             HHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTCCSCCCCGGGEEECSSSSCCEEECCCCCC----------
T ss_pred             HHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCCceEEEeecCccccccccCCCC
Confidence            99987543     58899999999999999999995   45999999999999987765  9999999987532     2


Q ss_pred             CccccccccCCccccCCCCccccCCCC-CccchHHHHHHHHHHHhCCCCCCCCCc--chHHHHHHhhcccccccccchhh
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFW-QRCDVYSFGVVLLEILTGKMAKGDGEL--GIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~-~k~DV~SfGvvl~el~tg~~p~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                      ...+|..|+|||++..       ..++ .++|||||||++|||++|+.||.....  ......+.......       ..
T Consensus       176 ~~~gt~~y~aPE~~~~-------~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~-------~~  241 (361)
T 3uc3_A          176 STVGTPAYIAPEVLLR-------QEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKY-------SI  241 (361)
T ss_dssp             -----CTTSCHHHHHC-------SSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCC-------CC
T ss_pred             CCcCCCCcCChhhhcC-------CCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCC-------CC
Confidence            3456889999997533       2333 348999999999999999999974321  22222222111100       00


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .....   ...++.+++.+||+.||++|||+.|+++
T Consensus       242 ~~~~~---~s~~~~~li~~~L~~dP~~Rps~~ell~  274 (361)
T 3uc3_A          242 PDDIR---ISPECCHLISRIFVADPATRISIPEIKT  274 (361)
T ss_dssp             CTTSC---CCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             CCcCC---CCHHHHHHHHHHccCChhHCcCHHHHHh
Confidence            00001   1234667888899999999999999975

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=3.7e-38  Score=321.26  Aligned_cols=241  Identities=24%  Similarity=0.326  Sum_probs=185.7

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ..+.||+|+||.||+++. .++..||+|++....   ..+.+.+|++++++++||||+++++++...+..++||||+++|
T Consensus        26 ~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~  105 (285)
T 3is5_A           26 FKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETCEGG  105 (285)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCSCC
T ss_pred             ecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEeCCCC
Confidence            367899999999999996 457889999987652   3467889999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE---CCCCCeEEccCCcccccCC--
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV---DQLGNACISDIGVHQLFHT--  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl---~~~~~~kl~DfGl~~~~~~--  487 (640)
                      +|.+++..... ....+++..+..++.|++.||+|||+   .+|+||||||+|||+   +.++.+||+|||+++....  
T Consensus       106 ~L~~~l~~~~~-~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~  181 (285)
T 3is5_A          106 ELLERIVSAQA-RGKALSEGYVAELMKQMMNALAYFHS---QHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDE  181 (285)
T ss_dssp             BHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-----
T ss_pred             cHHHHHHhhhh-cccCCCHHHHHHHHHHHHHHHHHHHh---CCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCcc
Confidence            99998854311 01258899999999999999999995   459999999999999   4568899999999976542  


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         ...++..|+|||++.        ..++.++|||||||++|||++|+.||.........  ............     
T Consensus       182 ~~~~~~~t~~y~aPE~~~--------~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~--~~~~~~~~~~~~-----  246 (285)
T 3is5_A          182 HSTNAAGTALYMAPEVFK--------RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQ--QKATYKEPNYAV-----  246 (285)
T ss_dssp             -----CTTGGGCCHHHHT--------TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH--HHHHHCCCCCCC-----
T ss_pred             cCcCcccccCcCChHHhc--------cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHH--hhhccCCccccc-----
Confidence               234688999999652        34678999999999999999999999754322211  111111000000     


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                          .......++.+++.+||+.||++|||+.|+++
T Consensus       247 ----~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  278 (285)
T 3is5_A          247 ----ECRPLTPQAVDLLKQMLTKDPERRPSAAQVLH  278 (285)
T ss_dssp             ------CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             ----ccCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                00001234667888899999999999999874

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=2.2e-38  Score=324.18  Aligned_cols=250  Identities=14%  Similarity=0.189  Sum_probs=191.9

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEE-EcCCeEEEEEeccCCCCH
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYC-NGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~-~~~~~~~lV~Ey~~~gsL  414 (640)
                      ..+.||+|+||.||+|+. .+++.||||.+........+.+|+++++.++|++++..++++ ...+..++||||+ +|+|
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L   91 (296)
T 4hgt_A           13 LGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSL   91 (296)
T ss_dssp             EEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-CCBH
T ss_pred             EeeeecCCCCeEEEEEEEcCCCceEEEEeecccccchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEcc-CCCH
Confidence            357899999999999995 668899999877665556688899999999998888777666 5567889999999 9999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE---CCCCCeEEccCCcccccCC----
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV---DQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl---~~~~~~kl~DfGl~~~~~~----  487 (640)
                      .+++.....    .+++..+..++.|++.||+|||+.   +|+||||||+|||+   +.++.+||+|||+++....    
T Consensus        92 ~~~~~~~~~----~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~  164 (296)
T 4hgt_A           92 EDLFNFCSR----KFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTH  164 (296)
T ss_dssp             HHHHHHTTS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTC
T ss_pred             HHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccC
Confidence            999975432    589999999999999999999954   59999999999999   7889999999999986532    


Q ss_pred             ---------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHhhcccccc
Q 006559          488 ---------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQDESAW  557 (640)
Q Consensus       488 ---------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~~  557 (640)
                               ...++..|+|||++.       ...++.++|||||||++|||+||+.||...... .........      
T Consensus       165 ~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~------  231 (296)
T 4hgt_A          165 QHIPYRENKNLTGTARYASINTHL-------GIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERIS------  231 (296)
T ss_dssp             CBCCCCCSCCCCSCGGGCCHHHHT-------TCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHH------
T ss_pred             ccCCCCcccccCCCccccchHHhc-------CCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhh------
Confidence                     234588999999753       345678999999999999999999999742211 111111100      


Q ss_pred             cccchhhccCh--HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 006559          558 EVFDFELIMDK--EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGS  610 (640)
Q Consensus       558 ~~~d~~~~~~~--~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~  610 (640)
                         ......+.  .......++.+++..||+.||++|||+.++++.|+++..+..
T Consensus       232 ---~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~  283 (296)
T 4hgt_A          232 ---EKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG  283 (296)
T ss_dssp             ---HHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             ---cccccchhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhC
Confidence               00000000  001113457778888999999999999999999999886644

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=1.4e-38  Score=333.55  Aligned_cols=250  Identities=15%  Similarity=0.135  Sum_probs=184.2

Q ss_pred             hhccccccCcceEEEEEeC----CCcEEEEEEeccccc-------------hHHHHHHHHHHhccCCCcccceeEEEEc-
Q 006559          337 SAELLGKGCVGATYKVVLD----GGDVVVVKRIRERKK-------------KREVDEWLRVIGGLRHSNIVSIRAYCNG-  398 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~----~~~~vavK~l~~~~~-------------~~~~~~e~~~l~~l~H~niv~l~~~~~~-  398 (640)
                      ..+.||+|+||.||+|+..    .+..+|||.+.....             .+.+.+|+..++.++||||+++++++.. 
T Consensus        41 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~~~~~  120 (345)
T 2v62_A           41 LGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTE  120 (345)
T ss_dssp             EEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEEEEEE
T ss_pred             EEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecccccc
Confidence            3578999999999999975    567899999875421             1235567788899999999999999987 


Q ss_pred             ---CCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC--C
Q 006559          399 ---KDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG--N  473 (640)
Q Consensus       399 ---~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~--~  473 (640)
                         ....|+||||+ +++|.+++....     .+++..++.++.|++.||+|||+.   +|+||||||+|||++.++  .
T Consensus       121 ~~~~~~~~lv~e~~-~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~  191 (345)
T 2v62_A          121 FKGRSYRFMVMERL-GIDLQKISGQNG-----TFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLGYKNPDQ  191 (345)
T ss_dssp             SSSCEEEEEEEECE-EEEHHHHCBGGG-----BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEESSSTTS
T ss_pred             cCCCcEEEEEEecc-CCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEccCCCCc
Confidence               67899999999 999999997543     589999999999999999999954   599999999999999877  9


Q ss_pred             eEEccCCcccccCC-------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 006559          474 ACISDIGVHQLFHT-------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGE  540 (640)
Q Consensus       474 ~kl~DfGl~~~~~~-------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~  540 (640)
                      +||+|||+++.+..             ...++..|+|||++       ....++.++|||||||++|||+||+.||....
T Consensus       192 ~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~~~Di~slG~il~ell~g~~pf~~~~  264 (345)
T 2v62_A          192 VYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAH-------KGVALSRRSDVEILGYCMLRWLCGKLPWEQNL  264 (345)
T ss_dssp             EEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHH-------HTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGT
T ss_pred             EEEEeCCCceecccccccccchhccccccCCCccccCHHHh-------cCCCCCchhhHHHHHHHHHHHHhCCCCccccc
Confidence            99999999976531             23468899999965       33457889999999999999999999996422


Q ss_pred             cchHHH--HHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          541 LGIVKW--VQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       541 ~~~~~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                      ......  .......... ..... ....   .....++.+++..||+.||++||++.+|++.|+++..
T Consensus       265 ~~~~~~~~~~~~~~~~~~-~~~~~-~~~~---~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~  328 (345)
T 2v62_A          265 KDPVAVQTAKTNLLDELP-QSVLK-WAPS---GSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI  328 (345)
T ss_dssp             TCHHHHHHHHHHHHHTTT-HHHHH-HSCT---TSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred             cccHHHHHHHHhhccccc-HHHHh-hccc---cccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence            221111  1110000000 00000 0000   0122357778888999999999999999999988764

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=3.1e-39  Score=335.93  Aligned_cols=256  Identities=26%  Similarity=0.393  Sum_probs=191.8

Q ss_pred             hhccccccCcceEEEEEe-----CCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEc--CCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVL-----DGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNG--KDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-----~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~--~~~~~lV~E  407 (640)
                      ..+.||+|+||.||+|++     .++..||||++...  ...+.+.+|++++++++||||+++++++..  ....++|||
T Consensus        27 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e  106 (327)
T 3lxl_A           27 YISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVME  106 (327)
T ss_dssp             EEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEEEEEE
T ss_pred             hhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEEEEEe
Confidence            357899999999999984     45788999999765  234568899999999999999999999874  457999999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      |+++|+|.+++....    ..+++..++.++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....
T Consensus       107 ~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~  179 (327)
T 3lxl_A          107 YLPSGCLRDFLQRHR----ARLDASRLLLYSSQICKGMEYLGS---RRCVHRDLAARNILVESEAHVKIADFGLAKLLPL  179 (327)
T ss_dssp             CCTTCBHHHHHHHHG----GGCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCGGGCEECCT
T ss_pred             ecCCCCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCChhhEEECCCCCEEEcccccceeccc
Confidence            999999999997532    258999999999999999999995   4599999999999999999999999999986542


Q ss_pred             ---------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccc
Q 006559          488 ---------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE  558 (640)
Q Consensus       488 ---------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  558 (640)
                               ...++..|+|||++       ....++.++|||||||++|||+||+.||......................
T Consensus       180 ~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~  252 (327)
T 3lxl_A          180 DKDYYVVREPGQSPIFWYAPESL-------SDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSR  252 (327)
T ss_dssp             TCSEEECSSCCCSCGGGSCHHHH-------HHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHH
T ss_pred             CCccceeeccCCccccccCHHHh-------ccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHH
Confidence                     12346679999964       33456789999999999999999999986422111110000000000000


Q ss_pred             ---ccch--hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 006559          559 ---VFDF--ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG  609 (640)
Q Consensus       559 ---~~d~--~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~  609 (640)
                         ....  ......   .....+.+++..||+.||++|||+.++++.|+.+....
T Consensus       253 ~~~~~~~~~~~~~~~---~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~  305 (327)
T 3lxl_A          253 LLELLEEGQRLPAPP---ACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGS  305 (327)
T ss_dssp             HHHHHHTTCCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC----
T ss_pred             HHHHhhcccCCCCCC---cccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence               0000  000111   22345677888899999999999999999999987653

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9.4e-38  Score=319.95  Aligned_cols=247  Identities=20%  Similarity=0.271  Sum_probs=190.2

Q ss_pred             hhccccccCcceEEEEEeCC-C---cEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeE-EEEEec
Q 006559          337 SAELLGKGCVGATYKVVLDG-G---DVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDEL-FLVYDY  408 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~-~---~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~-~lV~Ey  408 (640)
                      ..++||+|+||.||+|+..+ +   ..||+|.+....   ..+.+.+|++++++++||||+++++++...+.. ++||||
T Consensus        25 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~  104 (298)
T 3pls_A           25 SDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPY  104 (298)
T ss_dssp             EEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEECC
T ss_pred             cCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEEec
Confidence            35789999999999998532 2   269999987543   235678899999999999999999999876654 999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-  487 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-  487 (640)
                      +.+|+|.+++....    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.... 
T Consensus       105 ~~~~~L~~~~~~~~----~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~  177 (298)
T 3pls_A          105 MCHGDLLQFIRSPQ----RNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARDILDR  177 (298)
T ss_dssp             CTTCBHHHHHHCTT----CCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTG
T ss_pred             ccCCCHHHHHhccc----cCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCCCcccccCC
Confidence            99999999997643    2578999999999999999999954   599999999999999999999999999975432 


Q ss_pred             ---------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCC-CCCCCcchHHHHHHhhcccccc
Q 006559          488 ---------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQDESAW  557 (640)
Q Consensus       488 ---------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p-~~~~~~~~~~~~~~~~~~~~~~  557 (640)
                               ...++..|+|||.+       ....++.++|||||||++|||+||..| +.......  ..........  
T Consensus       178 ~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~--~~~~~~~~~~--  246 (298)
T 3pls_A          178 EYYSVQQHRHARLPVKWTALESL-------QTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFD--LTHFLAQGRR--  246 (298)
T ss_dssp             GGGCSCCSSCTTCGGGGSCHHHH-------TTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGG--HHHHHHTTCC--
T ss_pred             cccccccCcCCCCCccccChhhh-------ccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHH--HHHHhhcCCC--
Confidence                     12346789999964       344677899999999999999996555 44322111  1111111100  


Q ss_pred             cccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 006559          558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGS  610 (640)
Q Consensus       558 ~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~  610 (640)
                            ......   ....+.+++..||+.||++|||+.++++.|+++.....
T Consensus       247 ------~~~~~~---~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~  290 (298)
T 3pls_A          247 ------LPQPEY---CPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALL  290 (298)
T ss_dssp             ------CCCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCC
T ss_pred             ------CCCCcc---chHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHh
Confidence                  001111   12346678888999999999999999999999876543

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=4.8e-38  Score=332.16  Aligned_cols=243  Identities=13%  Similarity=0.151  Sum_probs=187.6

Q ss_pred             hhccccccCcceEEEEE------eCCCcEEEEEEeccccchHHHHHHHHHHhccC---CCcccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVV------LDGGDVVVVKRIRERKKKREVDEWLRVIGGLR---HSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~------~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~---H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||.||+|.      ...++.||||++... ...++..|+++++.++   |+||+++++++...+..|+|||
T Consensus        69 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~~~lv~e  147 (365)
T 3e7e_A           69 VHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA-NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGE  147 (365)
T ss_dssp             EEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC-CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSSCEEEEEC
T ss_pred             EEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC-ChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCCCcEEEEe
Confidence            35789999999999994      456888999999754 3456677777777766   9999999999999999999999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC-----------CCCeEE
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ-----------LGNACI  476 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~-----------~~~~kl  476 (640)
                      ||++|+|.+++..........++|..++.++.|++.||+|||+   .+||||||||+|||++.           ++.+||
T Consensus       148 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~---~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl  224 (365)
T 3e7e_A          148 LYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHD---CEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLAL  224 (365)
T ss_dssp             CCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECGGGTCC------CTTEEE
T ss_pred             ccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhh---CCeecCCCCHHHEEecccccCccccccccCCEEE
Confidence            9999999999974322222368999999999999999999995   55999999999999998           899999


Q ss_pred             ccCCcccccC--------CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHH
Q 006559          477 SDIGVHQLFH--------TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQ  548 (640)
Q Consensus       477 ~DfGl~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~  548 (640)
                      +|||+++.+.        ....+|..|+|||++       ....++.++|||||||++|||+||+.||......      
T Consensus       225 ~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~------  291 (365)
T 3e7e_A          225 IDLGQSIDMKLFPKGTIFTAKCETSGFQCVEML-------SNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGG------  291 (365)
T ss_dssp             CCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHH-------TTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETT------
T ss_pred             eeCchhhhhhccCCCceeeeecCCCCCCChHHh-------cCCCCCccccHHHHHHHHHHHHhCCCccccCCCC------
Confidence            9999996542        234568999999975       3345788999999999999999999998632110      


Q ss_pred             HhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCC-CCHHHHHHHHHHhhcc
Q 006559          549 MMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDR-PNMSIVHRMIEDIRTK  608 (640)
Q Consensus       549 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~R-Ps~~~v~~~L~~i~~~  608 (640)
                             .+. .+...... ...+..   .+++..|++.+|.+| |+++++.+.|+++...
T Consensus       292 -------~~~-~~~~~~~~-~~~~~~---~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~  340 (365)
T 3e7e_A          292 -------ECK-PEGLFRRL-PHLDMW---NEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQ  340 (365)
T ss_dssp             -------EEE-ECSCCTTC-SSHHHH---HHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             -------cee-echhcccc-CcHHHH---HHHHHHHcCCCCCCcchHHHHHHHHHHHHHHH
Confidence                   000 00000000 112333   345556999999998 6788999999987755

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=2.6e-38  Score=320.99  Aligned_cols=245  Identities=25%  Similarity=0.348  Sum_probs=189.5

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcC-CeEEEEEeccCCCCHH
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGK-DELFLVYDYLPHGSLH  415 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~-~~~~lV~Ey~~~gsL~  415 (640)
                      ..+.||+|+||.||++... |..||||.++.....+.+.+|++++++++||||+++++++... +..++||||+++|+|.
T Consensus        25 ~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~  103 (278)
T 1byg_A           25 LLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLV  103 (278)
T ss_dssp             EEEEEEECSSCEEEEEEET-TEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHH
T ss_pred             EEeEEecCCCceEEEEEEc-CCEEEEEEecchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecCCCCCHH
Confidence            3578999999999999875 7889999998776677889999999999999999999997654 4789999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---cccc
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---FFIN  492 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---~~~~  492 (640)
                      +++....   ...+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....   ...+
T Consensus       104 ~~l~~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~  177 (278)
T 1byg_A          104 DYLRSRG---RSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLP  177 (278)
T ss_dssp             HHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC------------CC
T ss_pred             HHHHhcc---cccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeeccccccccccccCCCcc
Confidence            9997532   12378899999999999999999954   5999999999999999999999999998765432   2346


Q ss_pred             ccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHH
Q 006559          493 DAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEME  571 (640)
Q Consensus       493 ~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  571 (640)
                      ..|+|||++       ....++.++||||||+++|||+| |+.||......  ...........        ......  
T Consensus       178 ~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~--~~~~~~~~~~~--------~~~~~~--  238 (278)
T 1byg_A          178 VKWTAPEAL-------REKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK--DVVPRVEKGYK--------MDAPDG--  238 (278)
T ss_dssp             TTTSCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG--GHHHHHTTTCC--------CCCCTT--
T ss_pred             ccccCHHHh-------CCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHhcCCC--------CCCccc--
Confidence            789999964       34567789999999999999999 99999754322  11111111100        001111  


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          572 EEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       572 ~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                       ....+.+++..||+.||++||++.++++.|+++...
T Consensus       239 -~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~  274 (278)
T 1byg_A          239 -CPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH  274 (278)
T ss_dssp             -CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhh
Confidence             123466778889999999999999999999999865

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=4.5e-38  Score=342.12  Aligned_cols=235  Identities=19%  Similarity=0.314  Sum_probs=189.5

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+.. +|+.||||++....     ....+.+|+++++.++||||+++++++...+..|+||||+++
T Consensus        21 ~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~E~~~g  100 (476)
T 2y94_A           21 GDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSG  100 (476)
T ss_dssp             EEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCSS
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCC
Confidence            567999999999999965 68999999997542     235688999999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....     .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++....    
T Consensus       101 g~L~~~l~~~~-----~l~~~~~~~i~~qi~~aL~~LH~---~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~~  172 (476)
T 2y94_A          101 GELFDYICKNG-----RLDEKESRRLFQQILSGVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFL  172 (476)
T ss_dssp             EEHHHHTTSSS-----SCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTCCB
T ss_pred             CcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCCCcccccHHHEEEecCCCeEEEeccchhhccccccc
Confidence            99999997543     58999999999999999999994   5699999999999999999999999999987643    


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                       ...+|..|+|||++.+.      ...+.++||||+||++|||++|+.||.+....  ...+.....         ....
T Consensus       173 ~~~~gt~~y~aPE~~~~~------~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~--~~~~~i~~~---------~~~~  235 (476)
T 2y94_A          173 RTSCGSPNYAAPEVISGR------LYAGPEVDIWSSGVILYALLCGTLPFDDDHVP--TLFKKICDG---------IFYT  235 (476)
T ss_dssp             CCCCSCSTTCCHHHHTTC------CBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSH--HHHHHHHTT---------CCCC
T ss_pred             cccCCCcCeEChhhccCC------CCCCCcceehhhHHHHHHHhhCCCCCCCCCHH--HHHHHHhcC---------CcCC
Confidence             23568899999976432      12357899999999999999999999754322  111111111         0011


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      +....   .++.+++.+||+.||++|||+.++++
T Consensus       236 p~~~s---~~~~~Li~~~L~~dP~~Rpt~~eil~  266 (476)
T 2y94_A          236 PQYLN---PSVISLLKHMLQVDPMKRATIKDIRE  266 (476)
T ss_dssp             CTTCC---HHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CccCC---HHHHHHHHHHcCCCchhCcCHHHHHh
Confidence            11111   24667788899999999999999975

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=4.1e-38  Score=322.28  Aligned_cols=251  Identities=14%  Similarity=0.184  Sum_probs=194.4

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEE-EcCCeEEEEEeccCCCCH
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYC-NGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~-~~~~~~~lV~Ey~~~gsL  414 (640)
                      ..+.||+|+||.||+|+. .+++.||||.+......+.+.+|+++++.++|++++..++++ ...+..++||||+ +|+|
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L   91 (296)
T 3uzp_A           13 LGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSL   91 (296)
T ss_dssp             EEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-CCBH
T ss_pred             EEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcchhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEec-CCCH
Confidence            357899999999999995 678899999988766667788999999999998877766665 5567889999999 8999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE---CCCCCeEEccCCcccccCC----
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV---DQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl---~~~~~~kl~DfGl~~~~~~----  487 (640)
                      .+++....    ..+++..+..++.|++.||+|||+.   +|+||||||+|||+   +.++.+||+|||+++....    
T Consensus        92 ~~~~~~~~----~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~  164 (296)
T 3uzp_A           92 EDLFNFCS----RKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTH  164 (296)
T ss_dssp             HHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTC
T ss_pred             HHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccccc
Confidence            99997443    2589999999999999999999954   59999999999999   4889999999999876532    


Q ss_pred             ---------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHhhcccccc
Q 006559          488 ---------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQDESAW  557 (640)
Q Consensus       488 ---------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~~  557 (640)
                               ...++..|+|||++       ....++.++|||||||++|||+||+.||...... .........      
T Consensus       165 ~~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~------  231 (296)
T 3uzp_A          165 QHIPYRENKNLTGTARYASINTH-------LGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERIS------  231 (296)
T ss_dssp             CBCCCCCSCCCCSCTTTCCHHHH-------TTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHH------
T ss_pred             cccccccccccccccccCChhhh-------cCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhc------
Confidence                     22457889999975       3345678999999999999999999999742211 100010000      


Q ss_pred             cccchhhccCh--HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCCC
Q 006559          558 EVFDFELIMDK--EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSI  611 (640)
Q Consensus       558 ~~~d~~~~~~~--~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~~  611 (640)
                         ........  .......++.+++..||+.||++||++.++++.|+++..+...
T Consensus       232 ---~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~  284 (296)
T 3uzp_A          232 ---EKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGF  284 (296)
T ss_dssp             ---HHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred             ---ccccCCchHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcCC
Confidence               00000000  0011224577788889999999999999999999999876543

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=9.1e-38  Score=316.34  Aligned_cols=238  Identities=20%  Similarity=0.277  Sum_probs=187.9

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||.||+|+.. +++.||||.+....   ..+.+.+|+.+++.++||||+++++++...+..++||||+++|+
T Consensus        12 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   91 (276)
T 2yex_A           12 VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGE   91 (276)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEE
T ss_pred             EEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEEecCCCc
Confidence            568999999999999965 68899999987542   34668889999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC-------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-------  486 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~-------  486 (640)
                      |.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++....       
T Consensus        92 L~~~l~~~~-----~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~  163 (276)
T 2yex_A           92 LFDRIEPDI-----GMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERL  163 (276)
T ss_dssp             GGGGSBTTT-----BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECC
T ss_pred             HHHHHhhcc-----CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCCccccCCCcchhc
Confidence            999997542     588999999999999999999954   59999999999999999999999999987542       


Q ss_pred             -CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          487 -TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       487 -~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                       ....++..|+|||++...      ..++.++|||||||++|||+||+.||.........+.........    ...   
T Consensus       164 ~~~~~~~~~y~aPE~~~~~------~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~----~~~---  230 (276)
T 2yex_A          164 LNKMCGTLPYVAPELLKRR------EFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTY----LNP---  230 (276)
T ss_dssp             BCCCCSCGGGCCGGGGTCS------SBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTT----STT---
T ss_pred             ccCCccccCccChHHHhcC------CCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccc----cCc---
Confidence             223468889999975322      223578999999999999999999997543322222211111100    000   


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       ..   .....+.+++..||+.||++|||+.++++
T Consensus       231 -~~---~~~~~~~~li~~~l~~~p~~Rps~~~il~  261 (276)
T 2yex_A          231 -WK---KIDSAPLALLHKILVENPSARITIPDIKK  261 (276)
T ss_dssp             -GG---GSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             -hh---hcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence             01   11234567788899999999999998865

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=1.5e-38  Score=328.92  Aligned_cols=253  Identities=19%  Similarity=0.215  Sum_probs=185.2

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhc-cCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGG-LRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~-l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .++||+|+||.||+|+. .+++.||||++...  ...+.+.+|++++.+ ++||||+++++++...+..|+||||+++|+
T Consensus        18 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   97 (316)
T 2ac3_A           18 EDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGS   97 (316)
T ss_dssp             CCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTCB
T ss_pred             CceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEEcCCCCc
Confidence            35799999999999994 56889999999754  335678889999888 579999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC---eEEccCCcccccCC---
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN---ACISDIGVHQLFHT---  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~---~kl~DfGl~~~~~~---  487 (640)
                      |.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.   +||+|||+++....   
T Consensus        98 L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~  169 (316)
T 2ac3_A           98 ILSHIHKRR-----HFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGD  169 (316)
T ss_dssp             HHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-------
T ss_pred             HHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCc
Confidence            999997543     588999999999999999999954   5999999999999998776   99999999876431   


Q ss_pred             ----------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcc----
Q 006559          488 ----------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQD----  553 (640)
Q Consensus       488 ----------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~----  553 (640)
                                ...+|..|+|||++....  .....++.++|||||||++|||+||+.||.........|.......    
T Consensus       170 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~  247 (316)
T 2ac3_A          170 CSPISTPELLTPCGSAEYMAPEVVEAFS--EEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQN  247 (316)
T ss_dssp             ------------CCSGGGCCHHHHHHTS--HHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHH
T ss_pred             cccccccccccccCCcCccChHHhhccc--ccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHH
Confidence                      123688999999753210  0113467899999999999999999999975432211111000000    


Q ss_pred             cccccccchhhccCh-HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          554 ESAWEVFDFELIMDK-EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       554 ~~~~~~~d~~~~~~~-~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .....+.......+. .......++.+++.+||+.||++|||+.|+++
T Consensus       248 ~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  295 (316)
T 2ac3_A          248 MLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQ  295 (316)
T ss_dssp             HHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HHHHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence            000000000000010 01112345778888999999999999999875

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=1.2e-38  Score=333.46  Aligned_cols=233  Identities=22%  Similarity=0.341  Sum_probs=185.5

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      .++||+|+||.||+|+.. +++.||||.++..     ...+.+..|.+++..+ +||||+++++++...+..|+||||++
T Consensus        22 ~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~  101 (345)
T 1xjd_A           22 HKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLN  101 (345)
T ss_dssp             EEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEEEEEeCCC
Confidence            578999999999999975 5888999999754     2334566788888766 89999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC----
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH----  486 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~----  486 (640)
                      +|+|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...    
T Consensus       102 gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~  173 (345)
T 1xjd_A          102 GGDLMYHIQSCH-----KFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDA  173 (345)
T ss_dssp             TCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC
T ss_pred             CCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEEEeEChhhhhcccCCC
Confidence            999999997543     588999999999999999999954   59999999999999999999999999987642    


Q ss_pred             --CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          487 --TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       487 --~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                        ....+|..|+|||++.       ...++.++|||||||++|||++|+.||......  ...+......         .
T Consensus       174 ~~~~~~gt~~y~aPE~~~-------~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~i~~~~---------~  235 (345)
T 1xjd_A          174 KTNTFCGTPDYIAPEILL-------GQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEE--ELFHSIRMDN---------P  235 (345)
T ss_dssp             CBCCCCSCGGGCCHHHHT-------TCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCC---------C
T ss_pred             cccCCCCCcccCChhhhc-------CCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHH--HHHHHHHhCC---------C
Confidence              2345688999999753       345778999999999999999999999754321  1111111110         0


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHH-HHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMS-IVH  599 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~-~v~  599 (640)
                      ..+...+   .++.+++.+||+.||++||++. ++.
T Consensus       236 ~~p~~~s---~~~~~li~~lL~~dp~~R~~~~~~i~  268 (345)
T 1xjd_A          236 FYPRWLE---KEAKDLLVKLFVREPEKRLGVRGDIR  268 (345)
T ss_dssp             CCCTTSC---HHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             CCCcccC---HHHHHHHHHHhcCCHhHcCCChHHHH
Confidence            0111122   2456677889999999999997 654

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=3.3e-38  Score=328.25  Aligned_cols=235  Identities=18%  Similarity=0.255  Sum_probs=180.2

Q ss_pred             hhccccccCcceEEEEEe----CCCcEEEEEEecccc------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEE
Q 006559          337 SAELLGKGCVGATYKVVL----DGGDVVVVKRIRERK------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVY  406 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~----~~~~~vavK~l~~~~------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~  406 (640)
                      ..+.||+|+||.||+++.    .+++.||+|+++...      ....+.+|++++++++||||+++++++...+..|+||
T Consensus        21 ~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  100 (327)
T 3a62_A           21 LLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLIL  100 (327)
T ss_dssp             EEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred             EEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEEEEEE
Confidence            357899999999999986    478899999997542      2345678999999999999999999999999999999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||+++|+|.+++....     .+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus       101 e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~  172 (327)
T 3a62_A          101 EYLSGGELFMQLEREG-----IFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGLCKESI  172 (327)
T ss_dssp             ECCTTEEHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEEECCCSCC----
T ss_pred             eCCCCCcHHHHHHhCC-----CCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEEEEeCCcccccc
Confidence            9999999999997543     478899999999999999999954   59999999999999999999999999987542


Q ss_pred             ------CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccccc
Q 006559          487 ------TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVF  560 (640)
Q Consensus       487 ------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  560 (640)
                            ....+|..|+|||++.       ...++.++|||||||++|||++|+.||......  ...+.....       
T Consensus       173 ~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~--~~~~~i~~~-------  236 (327)
T 3a62_A          173 HDGTVTHTFCGTIEYMAPEILM-------RSGHNRAVDWWSLGALMYDMLTGAPPFTGENRK--KTIDKILKC-------  236 (327)
T ss_dssp             ------CTTSSCCTTSCHHHHT-------TSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHHHHT-------
T ss_pred             cCCccccccCCCcCccCHhhCc-------CCCCCCcccchhHHHHHHHHHHCCCCCCCCCHH--HHHHHHHhC-------
Confidence                  2245688999999753       345678999999999999999999999754321  111111111       


Q ss_pred             chhhccChHHHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 006559          561 DFELIMDKEMEEEMRALLQVALLCLAPLPKDRP-----NMSIVHR  600 (640)
Q Consensus       561 d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RP-----s~~~v~~  600 (640)
                        ....+....   .++.+++.+||+.||++||     ++.++++
T Consensus       237 --~~~~p~~~~---~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~  276 (327)
T 3a62_A          237 --KLNLPPYLT---QEARDLLKKLLKRNAASRLGAGPGDAGEVQA  276 (327)
T ss_dssp             --CCCCCTTSC---HHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred             --CCCCCCCCC---HHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence              111111122   3456777889999999999     5666653

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=4.6e-38  Score=324.52  Aligned_cols=249  Identities=21%  Similarity=0.276  Sum_probs=187.3

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccccc----hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERKK----KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~----~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|+.. +|+.||||++.....    .+.+.+|++++++++||||+++++++...+..++||||++++
T Consensus         8 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   87 (311)
T 4agu_A            8 IGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDHT   87 (311)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEE
T ss_pred             eeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEEeCCCc
Confidence            467999999999999975 588999999865532    355778999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      +|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....     
T Consensus        88 ~l~~~~~~~~-----~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  159 (311)
T 4agu_A           88 VLHELDRYQR-----GVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYY  159 (311)
T ss_dssp             HHHHHHHTSS-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC------
T ss_pred             hHHHHHhhhc-----CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCCchhccCccccc
Confidence            9999887543     488999999999999999999954   599999999999999999999999999987642     


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcch-HHHHHHhhcc------------
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGI-VKWVQMMGQD------------  553 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~-~~~~~~~~~~------------  553 (640)
                       ...++..|+|||++.+      ...++.++|||||||++|||+||+.||....... ...+......            
T Consensus       160 ~~~~~~~~y~aPE~~~~------~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (311)
T 4agu_A          160 DDEVATRWYRSPELLVG------DTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTN  233 (311)
T ss_dssp             ------GGGCCHHHHHT------CSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTC
T ss_pred             CCCcCCccccChHHHhc------CCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccc
Confidence             2345888999997532      2456789999999999999999999997543221 1111111000            


Q ss_pred             ccc--ccccchhhccC--hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          554 ESA--WEVFDFELIMD--KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       554 ~~~--~~~~d~~~~~~--~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ...  ....++.....  .........+.+++..||+.||++|||+.|+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  284 (311)
T 4agu_A          234 QYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH  284 (311)
T ss_dssp             GGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred             cccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence            000  00000000000  001122345778889999999999999999975

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.4e-38  Score=336.97  Aligned_cols=267  Identities=18%  Similarity=0.209  Sum_probs=198.4

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCC--eEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKD--ELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~--~~~lV~Ey~~  410 (640)
                      ..++||+|+||.||+|+.. +++.||||++...   ...+.+.+|++++++++||||+++++++...+  ..++||||++
T Consensus        13 i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~e~~~   92 (396)
T 4eut_A           13 LSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCP   92 (396)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEECCCT
T ss_pred             EEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEEecCC
Confidence            3568999999999999975 4889999999754   23466778999999999999999999998755  7899999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE----CCCCCeEEccCCcccccC
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV----DQLGNACISDIGVHQLFH  486 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl----~~~~~~kl~DfGl~~~~~  486 (640)
                      +|+|.+++.....  ...+++..++.++.|++.||+|||+.   +|+||||||+|||+    +.++.+||+|||+++...
T Consensus        93 ~g~L~~~l~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~  167 (396)
T 4eut_A           93 CGSLYTVLEEPSN--AYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE  167 (396)
T ss_dssp             TEEHHHHTTSGGG--TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECC
T ss_pred             CCCHHHHHHhhhc--ccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEecCCCceEcc
Confidence            9999999976432  12389999999999999999999954   59999999999999    788889999999998764


Q ss_pred             C-----CccccccccCCccccCCCCc-cccCCCCCccchHHHHHHHHHHHhCCCCCCCCC--cchHHHHHHhh-ccc-cc
Q 006559          487 T-----PFFINDAYNAPELKFNNNNN-YSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGE--LGIVKWVQMMG-QDE-SA  556 (640)
Q Consensus       487 ~-----~~~~~~~y~aPE~~~~~~~~-~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~--~~~~~~~~~~~-~~~-~~  556 (640)
                      .     ...+|..|+|||++...... .....++.++|||||||++|||+||+.||....  ....+.+.... ... ..
T Consensus       168 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~  247 (396)
T 4eut_A          168 DDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGA  247 (396)
T ss_dssp             CGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTTC
T ss_pred             CCCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCccc
Confidence            3     23568899999975321100 001356678999999999999999999986321  11122221111 110 00


Q ss_pred             cc-c-------cc--hhhccCh-HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          557 WE-V-------FD--FELIMDK-EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       557 ~~-~-------~d--~~~~~~~-~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      +. .       ++  ....... ........+.+++..||+.||++||++.++++.++++..+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~  310 (396)
T 4eut_A          248 ISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR  310 (396)
T ss_dssp             CEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred             chhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence            00 0       00  0000000 1133445667788889999999999999999999998654

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=5.8e-38  Score=323.71  Aligned_cols=248  Identities=19%  Similarity=0.222  Sum_probs=188.6

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..+.||+|+||.||+|+.. +++.||||.+....     ..+.+.+|+.++++++||||+++++++...+..++||||++
T Consensus        38 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  117 (309)
T 2h34_A           38 LRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVDMRLIN  117 (309)
T ss_dssp             EEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCC
T ss_pred             EEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEEEEecC
Confidence            3578999999999999965 68889999987542     13567889999999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                      +++|.+++....     ++++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||++.....   
T Consensus       118 ~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~  189 (309)
T 2h34_A          118 GVDLAAMLRRQG-----PLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASATTDEKL  189 (309)
T ss_dssp             CEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSCCC---------
T ss_pred             CCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEecCccCcccccccc
Confidence            999999997543     588999999999999999999954   599999999999999999999999999876543   


Q ss_pred             ----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchh
Q 006559          488 ----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       488 ----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                          ...++..|+|||++       ....++.++||||||+++|||+||+.||........  .........     .+.
T Consensus       190 ~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~~~~~~~~~-----~~~  255 (309)
T 2h34_A          190 TQLGNTVGTLYYMAPERF-------SESHATYRADIYALTCVLYECLTGSPPYQGDQLSVM--GAHINQAIP-----RPS  255 (309)
T ss_dssp             -------CCGGGCCGGGT-------CC----CCCHHHHHHHHHHHHHHSSCSSCSCHHHHH--HHHHHSCCC-----CGG
T ss_pred             ccccccCCCcCccCHHHH-------cCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHHHH--HHHhccCCC-----Ccc
Confidence                23457889999965       334567899999999999999999999975432211  111111100     000


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCC-CHHHHHHHHHHhhccCC
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRP-NMSIVHRMIEDIRTKGS  610 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RP-s~~~v~~~L~~i~~~~~  610 (640)
                       ....   ....++.+++.+||+.||++|| ++.++++.|+++.....
T Consensus       256 -~~~~---~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~~  299 (309)
T 2h34_A          256 -TVRP---GIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATAD  299 (309)
T ss_dssp             -GTST---TCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC---
T ss_pred             -ccCC---CCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhhc
Confidence             0011   1122466778889999999999 99999999999876543

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=3.3e-38  Score=331.08  Aligned_cols=229  Identities=21%  Similarity=0.288  Sum_probs=183.3

Q ss_pred             hccccccCcceEEEEEeCC-CcEEEEEEeccc-----cchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLDG-GDVVVVKRIRER-----KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~-----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      .++||+|+||.||+|+... ++.||||+++..     ...+.+..|.+++..+ +||||+++++++...+..|+||||++
T Consensus        25 ~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~  104 (353)
T 2i0e_A           25 LMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVN  104 (353)
T ss_dssp             EEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEEEEECCC
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEEEEeCCC
Confidence            5689999999999999764 788999999754     2345577888899887 79999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC----
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH----  486 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~----  486 (640)
                      +|+|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...    
T Consensus       105 gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~  176 (353)
T 2i0e_A          105 GGDLMYHIQQVG-----RFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGV  176 (353)
T ss_dssp             SCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC
T ss_pred             CCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEEeCCcccccccCCc
Confidence            999999997543     488999999999999999999954   59999999999999999999999999998632    


Q ss_pred             --CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          487 --TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       487 --~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                        ....+|..|+|||++.       ...++.++|||||||++|||++|+.||.....  ....+.....         ..
T Consensus       177 ~~~~~~gt~~y~aPE~~~-------~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~--~~~~~~i~~~---------~~  238 (353)
T 2i0e_A          177 TTKTFCGTPDYIAPEIIA-------YQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE--DELFQSIMEH---------NV  238 (353)
T ss_dssp             CBCCCCSCGGGCCHHHHT-------TCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHC---------CC
T ss_pred             ccccccCCccccChhhhc-------CCCcCCcccccchHHHHHHHHcCCCCCCCCCH--HHHHHHHHhC---------CC
Confidence              2345689999999753       34577899999999999999999999975432  1222221111         11


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNM  595 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~  595 (640)
                      ..+...+   .++.+++..||+.||++||++
T Consensus       239 ~~p~~~s---~~~~~li~~lL~~dP~~R~~~  266 (353)
T 2i0e_A          239 AYPKSMS---KEAVAICKGLMTKHPGKRLGC  266 (353)
T ss_dssp             CCCTTSC---HHHHHHHHHHTCSCTTSCTTC
T ss_pred             CCCCCCC---HHHHHHHHHHhhcCHHHcCCC
Confidence            1111222   346667788999999999964

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=4.5e-38  Score=329.52  Aligned_cols=251  Identities=15%  Similarity=0.168  Sum_probs=188.2

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc-------cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER-------KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-------~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      ..+.||+|+||.||+|+. .++..||+|.+...       ...+.+.+|++++++++||||+++++++...+..++||||
T Consensus        30 ~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~  109 (345)
T 3hko_A           30 LKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYICLVMEL  109 (345)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCCeEEEEEeC
Confidence            357899999999999996 46788999998643       2335688899999999999999999999999999999999


Q ss_pred             cCCCCHHHhhccCCC-----------------------------------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCC
Q 006559          409 LPHGSLHSLLHGSRG-----------------------------------PGRMPVDWNKRLKLASDSAKGLAFLHGYNK  453 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~-----------------------------------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~  453 (640)
                      +++|+|.+++.....                                   .....+++..+..++.|++.||+|||+.  
T Consensus       110 ~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~--  187 (345)
T 3hko_A          110 CHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQ--  187 (345)
T ss_dssp             CCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred             CCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHC--
Confidence            999999999852110                                   0011345677888999999999999954  


Q ss_pred             CCceecCCCCCCeEECCCC--CeEEccCCcccccCC----------CccccccccCCccccCCCCccccCCCCCccchHH
Q 006559          454 AHLFHGHLSSSNIVVDQLG--NACISDIGVHQLFHT----------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYS  521 (640)
Q Consensus       454 ~~ivHrdlk~~NILl~~~~--~~kl~DfGl~~~~~~----------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~S  521 (640)
                       +|+||||||+|||++.++  .+||+|||+++.+..          ...+|..|+|||++..     ....++.++||||
T Consensus       188 -~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~~~Diws  261 (345)
T 3hko_A          188 -GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNT-----TNESYGPKCDAWS  261 (345)
T ss_dssp             -TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTC-----SSSCCCTHHHHHH
T ss_pred             -CccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhcc-----CCCCCCcHHHHHH
Confidence             599999999999998776  899999999976421          2346888999997632     2246778999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH-
Q 006559          522 FGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR-  600 (640)
Q Consensus       522 fGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~-  600 (640)
                      |||++|||+||+.||......  .............  ..      +........+.+++..||+.||++||++.++++ 
T Consensus       262 lG~il~el~~g~~pf~~~~~~--~~~~~~~~~~~~~--~~------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~h  331 (345)
T 3hko_A          262 AGVLLHLLLMGAVPFPGVNDA--DTISQVLNKKLCF--EN------PNYNVLSPLARDLLSNLLNRNVDERFDAMRALQH  331 (345)
T ss_dssp             HHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCCCCT--TS------GGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHHS
T ss_pred             HHHHHHHHHHCCCCCCCCChH--HHHHHHHhccccc--CC------cccccCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence            999999999999999754322  1111111111000  00      111112234667788899999999999999975 


Q ss_pred             -HHHHh
Q 006559          601 -MIEDI  605 (640)
Q Consensus       601 -~L~~i  605 (640)
                       .++++
T Consensus       332 p~~~~~  337 (345)
T 3hko_A          332 PWISQF  337 (345)
T ss_dssp             HHHHTT
T ss_pred             hhhccC
Confidence             44443

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=2e-38  Score=324.14  Aligned_cols=240  Identities=23%  Similarity=0.293  Sum_probs=189.1

Q ss_pred             cccccCcceEEEEEe---CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          340 LLGKGCVGATYKVVL---DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~---~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .||+|+||.||+|..   ..+..||||.++...    ..+++.+|++++++++||||+++++++ ..+..++||||+++|
T Consensus        24 ~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~lv~e~~~~~  102 (291)
T 1xbb_A           24 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWMLVMEMAELG  102 (291)
T ss_dssp             EEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEEEEEECCTTE
T ss_pred             ccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcEEEEEeCCCC
Confidence            799999999999964   346789999987542    246688999999999999999999999 567789999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....    
T Consensus       103 ~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  174 (291)
T 1xbb_A          103 PLNKYLQQNR-----HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY  174 (291)
T ss_dssp             EHHHHHHHCT-----TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEE
T ss_pred             CHHHHHHhCc-----CCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEEccCCcceeeccCCCcc
Confidence            9999998643     488999999999999999999954   5999999999999999999999999998876432    


Q ss_pred             -----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccch
Q 006559          489 -----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       489 -----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                           ...+..|+|||++       ....++.++|||||||++|||+| |+.||.......  ..+........      
T Consensus       175 ~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~--~~~~~~~~~~~------  239 (291)
T 1xbb_A          175 KAQTHGKWPVKWYAPECI-------NYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE--VTAMLEKGERM------  239 (291)
T ss_dssp             EC----CCCGGGCCHHHH-------HHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--HHHHHHTTCCC------
T ss_pred             cccccCCCCceeeChHHh-------ccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHH--HHHHHHcCCCC------
Confidence                 1234679999965       33456789999999999999999 999997543221  11111111000      


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                        ..+.   .....+.+++..||+.||++||++.++++.|+++...
T Consensus       240 --~~~~---~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~  280 (291)
T 1xbb_A          240 --GCPA---GCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD  280 (291)
T ss_dssp             --CCCT---TCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             --CCCC---CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence              0111   1223567788889999999999999999999998754

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=8.7e-38  Score=316.88  Aligned_cols=243  Identities=16%  Similarity=0.212  Sum_probs=191.3

Q ss_pred             hhccccccCcceEEEEEeCC-CcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          337 SAELLGKGCVGATYKVVLDG-GDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      ..+.||+|+||.||+|+... +..||+|++...  ...+.+.+|++++++++||||+++++++...+..++||||+++++
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   92 (277)
T 3f3z_A           13 LENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGE   92 (277)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCCSCB
T ss_pred             eeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEeccCCCc
Confidence            35689999999999999654 678999998764  345678899999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE---CCCCCeEEccCCcccccCC---
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV---DQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl---~~~~~~kl~DfGl~~~~~~---  487 (640)
                      |.+++....     .+++..+..++.|++.||+|||+   .+|+||||||+|||+   +.++.+||+|||++.....   
T Consensus        93 L~~~~~~~~-----~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~  164 (277)
T 3f3z_A           93 LFERVVHKR-----VFRESDAARIMKDVLSAVAYCHK---LNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKM  164 (277)
T ss_dssp             HHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSC
T ss_pred             HHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccc
Confidence            999987543     58899999999999999999995   459999999999999   7889999999999876543   


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                        ...++..|+|||++.        ..++.++|||||||++|||+||+.||......  ............  ...    
T Consensus       165 ~~~~~~t~~y~aPE~~~--------~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~~~~~--~~~----  228 (277)
T 3f3z_A          165 MRTKVGTPYYVSPQVLE--------GLYGPECDEWSAGVMMYVLLCGYPPFSAPTDS--EVMLKIREGTFT--FPE----  228 (277)
T ss_dssp             BCCCCSCTTTCCHHHHT--------TCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCCCC--CCH----
T ss_pred             hhccCCCCCccChHHhc--------ccCCchhhehhHHHHHHHHHHCCCCCCCCCHH--HHHHHHHhCCCC--CCc----
Confidence              234688999999752        23778999999999999999999999754321  111111111000  000    


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHh
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDI  605 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i  605 (640)
                        .........+.+++..||+.||++||++.++++  .+++.
T Consensus       229 --~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h~~~~~~  268 (277)
T 3f3z_A          229 --KDWLNVSPQAESLIRRLLTKSPKQRITSLQALEHEWFEKQ  268 (277)
T ss_dssp             --HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHHH
T ss_pred             --hhhhcCCHHHHHHHHHHccCChhhCcCHHHHhcCHHHhcc
Confidence              000112345677888899999999999999974  44443

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=9.6e-39  Score=341.46  Aligned_cols=246  Identities=16%  Similarity=0.175  Sum_probs=186.9

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .++||+|+||.||+++.. +++.||||++...     ...+.+.+|..++..++||||+++++++.+.+..|+||||+++
T Consensus        66 ~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lVmE~~~g  145 (412)
T 2vd5_A           66 LKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYLYLVMEYYVG  145 (412)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEcCCCC
Confidence            468999999999999974 6899999999753     1223477889999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....    ..+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+|||+++....    
T Consensus       146 g~L~~~l~~~~----~~l~~~~~~~~~~qi~~aL~~LH~---~giiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~~~  218 (412)
T 2vd5_A          146 GDLLTLLSKFG----ERIPAEMARFYLAEIVMAIDSVHR---LGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTV  218 (412)
T ss_dssp             CBHHHHHHHHS----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCE
T ss_pred             CcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccCHHHeeecCCCCEEEeechhheeccCCCcc
Confidence            99999997532    148899999999999999999995   4599999999999999999999999999976542    


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         ...+|..|+|||++...........++.++|||||||++|||+||+.||......  +.........       ...
T Consensus       219 ~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~--~~~~~i~~~~-------~~~  289 (412)
T 2vd5_A          219 RSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTA--ETYGKIVHYK-------EHL  289 (412)
T ss_dssp             ECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHTHH-------HHC
T ss_pred             ccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHH--HHHHHHHhcc-------cCc
Confidence               2357899999997642111111345788999999999999999999999754321  1111111100       000


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCC---CCHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDR---PNMSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~R---Ps~~~v~~  600 (640)
                      ..+........++.+++.+||. +|++|   |++.|+.+
T Consensus       290 ~~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~  327 (412)
T 2vd5_A          290 SLPLVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT  327 (412)
T ss_dssp             CCC----CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred             CCCccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence            0010001122346677788999 99998   58888853

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=1.8e-38  Score=341.76  Aligned_cols=245  Identities=16%  Similarity=0.212  Sum_probs=187.0

Q ss_pred             hccccccCcceEEEEEeCC-CcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLDG-GDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .++||+|+||+||+|+... ++.||||++....     ....+.+|..++..++||||++++++|.+.+..|+|||||++
T Consensus        79 ~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lV~Ey~~g  158 (437)
T 4aw2_A           79 LKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVG  158 (437)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred             EEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCEEEEEEecCCC
Confidence            5689999999999999764 7889999997531     223478899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....    ..+++..+..++.|++.||+|||+   .+||||||||+|||++.++.+||+|||+++....    
T Consensus       159 g~L~~~l~~~~----~~l~e~~~~~~~~qi~~aL~~LH~---~giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~~~  231 (437)
T 4aw2_A          159 GDLLTLLSKFE----DRLPEEMARFYLAEMVIAIDSVHQ---LHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTV  231 (437)
T ss_dssp             CBHHHHHHTTT----TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCE
T ss_pred             CcHHHHHHHcc----CCCCHHHHHHHHHHHHHHHHHHHh---CCeEecccCHHHeeEcCCCCEEEcchhhhhhcccCCCc
Confidence            99999998632    258999999999999999999995   4599999999999999999999999999976532    


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         ...+|..|+|||++....  .....++.++|||||||++|||+||+.||......  +.........       ...
T Consensus       232 ~~~~~~GT~~Y~APE~l~~~~--~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~--~~~~~i~~~~-------~~~  300 (437)
T 4aw2_A          232 QSSVAVGTPDYISPEILQAME--GGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLV--ETYGKIMNHK-------ERF  300 (437)
T ss_dssp             ECCSCCSCGGGCCHHHHHHHH--TSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHTHH-------HHC
T ss_pred             ccccccCCcCeeChHHHhhcc--cCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChh--HHHHhhhhcc-------ccc
Confidence               245799999999763100  01345788999999999999999999999754321  1111111000       000


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCC--CCCHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKD--RPNMSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~--RPs~~~v~~  600 (640)
                      ..+........++.+++.+|+..+|++  ||++.|+.+
T Consensus       301 ~~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~  338 (437)
T 4aw2_A          301 QFPTQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKK  338 (437)
T ss_dssp             CCCSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred             cCCcccccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence            001000011223556677788888888  999999864

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=7.3e-38  Score=317.87  Aligned_cols=234  Identities=20%  Similarity=0.308  Sum_probs=186.4

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+.. ++..||||.+...     .....+.+|+.++++++||||+++++++...+..++||||+++
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   93 (279)
T 3fdn_A           14 GRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPL   93 (279)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred             eeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEEEecCCC
Confidence            567999999999999865 5678999998653     2345688899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....     .+++..+..++.|++.||+|||   ..+|+||||||+||+++.++.+||+|||++.....    
T Consensus        94 ~~l~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~~~  165 (279)
T 3fdn_A           94 GTVYRELQKLS-----KFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT  165 (279)
T ss_dssp             EEHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHH---TTTCEECCCCGGGEEECTTSCEEECSCCEESCC------
T ss_pred             CcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHhEEEcCCCCEEEEeccccccCCccccc
Confidence            99999987543     5889999999999999999999   45699999999999999999999999999865432    


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      ...++..|+|||++       ....++.++||||||+++|||++|+.||......  ...+.....         ....+
T Consensus       166 ~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~---------~~~~~  227 (279)
T 3fdn_A          166 DLCGTLDYLPPEMI-------EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQ--ETYKRISRV---------EFTFP  227 (279)
T ss_dssp             --CCCCTTCCHHHH-------TTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHHT---------CCCCC
T ss_pred             ccCCCCCccCHhHh-------ccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHH--HHHHHHHhC---------CCCCC
Confidence            23568899999965       3345678999999999999999999999754321  111111110         00011


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ...   ...+.+++..||+.||++|||+.|+++
T Consensus       228 ~~~---~~~~~~li~~~l~~~p~~Rps~~e~l~  257 (279)
T 3fdn_A          228 DFV---TEGARDLISRLLKHNPSQRPMLREVLE  257 (279)
T ss_dssp             TTS---CHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             CcC---CHHHHHHHHHHhccChhhCCCHHHHhh
Confidence            111   224567788899999999999999986

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=4.5e-38  Score=335.10  Aligned_cols=243  Identities=16%  Similarity=0.213  Sum_probs=184.9

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEecccc----chHHHHHHHHHHhccC--CCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERK----KKREVDEWLRVIGGLR--HSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~--H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..+.||+|+||.||++...+++.||||++....    ..+.+.+|++++++++  ||||+++++++...+..|+||| +.
T Consensus        60 ~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~E-~~  138 (390)
T 2zmd_A           60 ILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CG  138 (390)
T ss_dssp             EEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEE-CC
T ss_pred             EEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEEe-cC
Confidence            357899999999999998889999999986542    2356788999999997  5999999999999999999999 56


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                      +|+|.+++....     .+++..+..++.||+.||+|||+   .+|+||||||+|||++ ++.+||+|||+++.+..   
T Consensus       139 ~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~aL~~lH~---~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~  209 (390)
T 2zmd_A          139 NIDLNSWLKKKK-----SIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT  209 (390)
T ss_dssp             SEEHHHHHHHCS-----SCCHHHHHHHHHHHHHHHHHHHT---TTCCCCCCCGGGEEES-SSCEEECCCSSSCCC-----
T ss_pred             CCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCc
Confidence            889999998653     57888999999999999999995   4599999999999996 58999999999986532   


Q ss_pred             -----CccccccccCCccccCCCCc----cccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccc
Q 006559          488 -----PFFINDAYNAPELKFNNNNN----YSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE  558 (640)
Q Consensus       488 -----~~~~~~~y~aPE~~~~~~~~----~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  558 (640)
                           ...+|..|+|||++......    .....++.++|||||||++|||++|+.||....... ............. 
T Consensus       210 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~-~~~~~~~~~~~~~-  287 (390)
T 2zmd_A          210 SVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI-SKLHAIIDPNHEI-  287 (390)
T ss_dssp             ----CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH-HHHHHHHCTTSCC-
T ss_pred             cccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHH-HHHHHHhCccccC-
Confidence                 23568899999986432111    112467889999999999999999999997532221 1111111111000 


Q ss_pred             ccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       559 ~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                            ..+...   ..++.+++..||+.||++||++.|+++
T Consensus       288 ------~~~~~~---~~~~~~li~~~L~~dP~~Rps~~ell~  320 (390)
T 2zmd_A          288 ------EFPDIP---EKDLQDVLKCCLKRDPKQRISIPELLA  320 (390)
T ss_dssp             ------CCCCCS---CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ------CCCccc---hHHHHHHHHHHcccChhhCCCHHHHhh
Confidence                  001111   224667788899999999999999975

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=5.2e-38  Score=337.83  Aligned_cols=239  Identities=18%  Similarity=0.272  Sum_probs=180.4

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc----------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK----------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~----------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~  406 (640)
                      .+.||+|+||.||+|.. .+++.||||.+....          ....+.+|++++++++||||+++++++. .+..|+||
T Consensus       140 ~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-~~~~~lv~  218 (419)
T 3i6u_A          140 SKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-AEDYYIVL  218 (419)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-SSEEEEEE
T ss_pred             EeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCceEEEE
Confidence            56799999999999986 457899999987542          1124778999999999999999999986 45689999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC---CCeEEccCCccc
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL---GNACISDIGVHQ  483 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~---~~~kl~DfGl~~  483 (640)
                      ||+++|+|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||++.+   +.+||+|||+++
T Consensus       219 e~~~~g~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~  290 (419)
T 3i6u_A          219 ELMEGGELFDKVVGNK-----RLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFGHSK  290 (419)
T ss_dssp             ECCTTCBGGGGTSSSC-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSSSCCEEECCSSTTT
T ss_pred             EcCCCCcHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCCcceEEEeecccce
Confidence            9999999999987543     589999999999999999999954   59999999999999754   459999999998


Q ss_pred             ccCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc--chHHHHHHhhccccc
Q 006559          484 LFHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL--GIVKWVQMMGQDESA  556 (640)
Q Consensus       484 ~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~--~~~~~~~~~~~~~~~  556 (640)
                      ....     ...+|..|+|||++..    .....++.++|||||||++|||+||+.||.....  .....+.....    
T Consensus       291 ~~~~~~~~~~~~gt~~y~aPE~~~~----~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~~~~----  362 (419)
T 3i6u_A          291 ILGETSLMRTLCGTPTYLAPEVLVS----VGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKY----  362 (419)
T ss_dssp             SCC-----------CTTCCTTTTC--------CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHTTCC----
T ss_pred             ecCCCccccccCCCCCccCceeeec----CCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhcCCC----
Confidence            7653     2346889999997532    1234577899999999999999999999975322  12211111000    


Q ss_pred             ccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          557 WEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       557 ~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       . ..+     .........+.+++.+||+.||++||++.|+++
T Consensus       363 -~-~~~-----~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  399 (419)
T 3i6u_A          363 -N-FIP-----EVWAEVSEKALDLVKKLLVVDPKARFTTEEALR  399 (419)
T ss_dssp             -C-CCH-----HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             -C-CCc-----hhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence             0 000     011122345777888999999999999999875

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=1.3e-37  Score=328.02  Aligned_cols=189  Identities=22%  Similarity=0.281  Sum_probs=161.9

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc-cchHHHHHHHHHHhccC-----CCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER-KKKREVDEWLRVIGGLR-----HSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~-----H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ..+.||+|+||.||+|+. .+++.||||+++.. ...+.+..|++++++++     ||||+++++++...+..++||||+
T Consensus        39 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~  118 (360)
T 3llt_A           39 VIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDHMCLIFEPL  118 (360)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTEEEEEECCC
T ss_pred             EEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCeeEEEEcCC
Confidence            357899999999999996 56889999999754 33456677888888876     999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC-------------------
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ-------------------  470 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~-------------------  470 (640)
                       +++|.+++.....   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.                   
T Consensus       119 -~~~L~~~~~~~~~---~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~  191 (360)
T 3llt_A          119 -GPSLYEIITRNNY---NGFHIEDIKLYCIEILKALNYLRK---MSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKI  191 (360)
T ss_dssp             -CCBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEE
T ss_pred             -CCCHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCcccEEEccccccccccchhcccccccc
Confidence             8999999976532   248899999999999999999995   45999999999999985                   


Q ss_pred             ------CCCeEEccCCcccccCC---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 006559          471 ------LGNACISDIGVHQLFHT---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG  539 (640)
Q Consensus       471 ------~~~~kl~DfGl~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~  539 (640)
                            ++.+||+|||+++....   ...+|..|+|||++.       ...++.++|||||||++|||+||+.||...
T Consensus       192 ~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~DiwslG~il~ell~g~~pf~~~  262 (360)
T 3llt_A          192 QIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVIL-------NLGWDVSSDMWSFGCVLAELYTGSLLFRTH  262 (360)
T ss_dssp             EEEEESCCCEEECCCTTCEETTSCCCSCCSCGGGCCHHHHT-------TCCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cccccCCCCEEEEeccCceecCCCCcCccCcccccCcHHHc-------CCCCCCccchHHHHHHHHHHHHCCCCCCCC
Confidence                  78999999999986543   345688999999753       345778999999999999999999999753

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=1.4e-37  Score=317.71  Aligned_cols=238  Identities=22%  Similarity=0.339  Sum_probs=185.7

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEc----CCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNG----KDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~----~~~~~lV~Ey  408 (640)
                      .+.||+|+||.||+|.. .++..||+|.+....    ..+.+.+|+.++++++||||+++++++..    ....++||||
T Consensus        31 ~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~  110 (290)
T 1t4h_A           31 DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTEL  110 (290)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEEC
T ss_pred             eeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEEEEe
Confidence            56799999999999986 457789999987542    23567889999999999999999999865    3568999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC-CCCCeEEccCCcccccCC
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIGVHQLFHT  487 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~-~~~~~kl~DfGl~~~~~~  487 (640)
                      +++|+|.+++....     .+++..+..++.|++.||+|||+.+ ++|+||||||+|||++ .++.+||+|||++.....
T Consensus       111 ~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~~-~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~  184 (290)
T 1t4h_A          111 MTSGTLKTYLKRFK-----VMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA  184 (290)
T ss_dssp             CCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred             cCCCCHHHHHHHcc-----CCCHHHHHHHHHHHHHHHHHHHcCC-CCEEECCCCHHHEEEECCCCCEEEeeCCCcccccc
Confidence            99999999997543     5889999999999999999999542 3499999999999998 789999999999976543


Q ss_pred             C----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchh
Q 006559          488 P----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       488 ~----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                      .    ..++..|+|||++.        ..++.++|||||||++|||+||+.||..... .....+......... ..   
T Consensus       185 ~~~~~~~~t~~y~aPE~~~--------~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~-~~~~~~~~~~~~~~~-~~---  251 (290)
T 1t4h_A          185 SFAKAVIGTPEFMAPEMYE--------EKYDESVDVYAFGMCMLEMATSEYPYSECQN-AAQIYRRVTSGVKPA-SF---  251 (290)
T ss_dssp             TSBEESCSSCCCCCGGGGG--------TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSS-HHHHHHHHTTTCCCG-GG---
T ss_pred             cccccccCCcCcCCHHHHh--------ccCCCcchHHHHHHHHHHHHhCCCCCCCcCc-HHHHHHHHhccCCcc-cc---
Confidence            2    34688999999642        3477899999999999999999999975332 222222211111000 00   


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                         +.   ....++.+++..||+.||++|||+.++++
T Consensus       252 ---~~---~~~~~l~~li~~~l~~dp~~Rps~~ell~  282 (290)
T 1t4h_A          252 ---DK---VAIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             ---GG---CCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ---CC---CCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence               00   11134677888899999999999999875

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=6.8e-38  Score=318.45  Aligned_cols=242  Identities=20%  Similarity=0.280  Sum_probs=189.1

Q ss_pred             hhccccccCcceEEEEEeCC----CcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLDG----GDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~----~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ..+.||+|+||.||+|+..+    +..||||.+...   ...+.+.+|++++++++||||+++++++.. +..++||||+
T Consensus        16 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~   94 (281)
T 3cc6_A           16 LNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWIIMELY   94 (281)
T ss_dssp             EEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEEEEECC
T ss_pred             EEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEEEEecC
Confidence            35789999999999998543    235999998765   234668889999999999999999999864 4578999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-  488 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-  488 (640)
                      ++|+|.+++....    ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++..... 
T Consensus        95 ~~~~L~~~l~~~~----~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  167 (281)
T 3cc6_A           95 PYGELGHYLERNK----NSLKVLTLVLYSLQICKAMAYLES---INCVHRDIAVRNILVASPECVKLGDFGLSRYIEDED  167 (281)
T ss_dssp             TTCBHHHHHHHHT----TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEEEETTEEEECCCCGGGCC----
T ss_pred             CCCCHHHHHHhcc----ccCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCccceEEECCCCcEEeCccCCCccccccc
Confidence            9999999997543    248899999999999999999995   45999999999999999999999999998865432 


Q ss_pred             ------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcc-hHHHHHHhhccccccccc
Q 006559          489 ------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELG-IVKWVQMMGQDESAWEVF  560 (640)
Q Consensus       489 ------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~  560 (640)
                            ...+..|+|||++       ....++.++|||||||++|||+| |+.||...... ....+..   ....    
T Consensus       168 ~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~~~~~---~~~~----  233 (281)
T 3cc6_A          168 YYKASVTRLPIKWMSPESI-------NFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEK---GDRL----  233 (281)
T ss_dssp             -----CCCCCGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHHHHHH---TCCC----
T ss_pred             ccccccCCCCcceeCchhh-------ccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHHHHhc---CCCC----
Confidence                  2336679999964       34567789999999999999999 99999743222 2111111   1000    


Q ss_pred             chhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          561 DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       561 d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                          .....   ....+.+++.+||+.||++||++.++++.|+++..
T Consensus       234 ----~~~~~---~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~  273 (281)
T 3cc6_A          234 ----PKPDL---CPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQ  273 (281)
T ss_dssp             ----CCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ----CCCCC---CCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHH
Confidence                00111   12346678888999999999999999999999864

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=7.9e-38  Score=334.24  Aligned_cols=238  Identities=16%  Similarity=0.231  Sum_probs=178.5

Q ss_pred             ccccccCcceEEEEEeC-CCcEEEEEEeccccchHHHHHHHHHH-hccCCCcccceeEEEEc----CCeEEEEEeccCCC
Q 006559          339 ELLGKGCVGATYKVVLD-GGDVVVVKRIRERKKKREVDEWLRVI-GGLRHSNIVSIRAYCNG----KDELFLVYDYLPHG  412 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~~~~~~~e~~~l-~~l~H~niv~l~~~~~~----~~~~~lV~Ey~~~g  412 (640)
                      ++||+|+||+||+++.. +++.||||+++..   ..+.+|+.++ +..+||||+++++++..    .+..|+|||||++|
T Consensus        68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~gg  144 (400)
T 1nxk_A           68 QVLGLGINGKVLQIFNKRTQEKFALKMLQDC---PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGG  144 (400)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECS---HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSE
T ss_pred             ceeeeccCeEEEEEEECCCCCEEEEEEeCcc---hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEeCCCC
Confidence            57999999999999964 6889999998643   3456677665 44589999999999875    56799999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC---CCCeEEccCCcccccCC--
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ---LGNACISDIGVHQLFHT--  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~---~~~~kl~DfGl~~~~~~--  487 (640)
                      +|.+++....   ...+++..+..++.||+.||+|||+.   +|+||||||+|||++.   ++.+||+|||+++....  
T Consensus       145 ~L~~~l~~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~  218 (400)
T 1nxk_A          145 ELFSRIQDRG---DQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHN  218 (400)
T ss_dssp             EHHHHHHCC------CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC---
T ss_pred             cHHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEEecccccccCCCC
Confidence            9999998643   23589999999999999999999954   5999999999999997   78999999999987642  


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchH--HHHHHhhcccccccccch
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIV--KWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~--~~~~~~~~~~~~~~~~d~  562 (640)
                         ...+|..|+|||++       ....++.++|||||||++|||+||+.||........  ..........  .....+
T Consensus       219 ~~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~--~~~~~~  289 (400)
T 1nxk_A          219 SLTTPCYTPYYVAPEVL-------GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQ--YEFPNP  289 (400)
T ss_dssp             --------CTTCCGGGS-------CCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTC--CCCCTT
T ss_pred             ccccCCCCCCccCHhhc-------CCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCc--ccCCCc
Confidence               23458899999975       345678899999999999999999999975322110  0011110000  000000


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                            .......++.+++..||+.||++|||+.|+++
T Consensus       290 ------~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~  321 (400)
T 1nxk_A          290 ------EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN  321 (400)
T ss_dssp             ------TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             ------ccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence                  01112235677888899999999999999976

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=1e-38  Score=329.58  Aligned_cols=247  Identities=21%  Similarity=0.268  Sum_probs=185.3

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCC----eEEEEE
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKD----ELFLVY  406 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~----~~~lV~  406 (640)
                      ..+.||+|+||.||+|+. .+++.||||+++...     ....+.+|++++++++||||+++++++....    ..|+||
T Consensus        16 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~lv~   95 (311)
T 3ork_A           16 LGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVM   95 (311)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcccEEEE
Confidence            357899999999999995 668899999997642     1245778999999999999999999987643    359999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||+++|+|.++++...     ++++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus        96 e~~~g~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~  167 (311)
T 3ork_A           96 EYVDGVTLRDIVHTEG-----PMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAIA  167 (311)
T ss_dssp             ECCCEEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCCSCC----
T ss_pred             ecCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeeccCccccc
Confidence            9999999999997543     589999999999999999999954   59999999999999999999999999987653


Q ss_pred             C---------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccc
Q 006559          487 T---------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAW  557 (640)
Q Consensus       487 ~---------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  557 (640)
                      .         ...++..|+|||++       ....++.++|||||||++|||+||+.||.........+..... .. . 
T Consensus       168 ~~~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~-~~-~-  237 (311)
T 3ork_A          168 DSGNSVTQTAAVIGTAQYLSPEQA-------RGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVRE-DP-I-  237 (311)
T ss_dssp             --------------CCTTCCHHHH-------HTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHC-CC-C-
T ss_pred             ccccccccccccCcCcccCCHHHh-------cCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcC-CC-C-
Confidence            2         12458899999975       3345778999999999999999999999754322221111111 00 0 


Q ss_pred             cccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHH-HHHHHHHhhcc
Q 006559          558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSI-VHRMIEDIRTK  608 (640)
Q Consensus       558 ~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~-v~~~L~~i~~~  608 (640)
                         .+. ...   .....++.+++.+||+.||++||+..+ +...+.++...
T Consensus       238 ---~~~-~~~---~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~~  282 (311)
T 3ork_A          238 ---PPS-ARH---EGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNG  282 (311)
T ss_dssp             ---CHH-HHS---TTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHTT
T ss_pred             ---Ccc-ccc---CCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHhcC
Confidence               000 000   112335677888899999999997554 55666666543

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=2.5e-38  Score=343.48  Aligned_cols=236  Identities=20%  Similarity=0.296  Sum_probs=182.0

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..+.||+|+||.||+|+. .+++.||||++...     .....+.+|+++++.++||||++++++|...+..|+||||++
T Consensus       152 ~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~  231 (446)
T 4ejn_A          152 YLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYAN  231 (446)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEEECCCS
T ss_pred             EeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEEEeeCC
Confidence            357899999999999995 46889999999754     123456678899999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC----
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH----  486 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~----  486 (640)
                      +|+|.+++....     .+++..+..++.|++.||+|||+  ..+|+||||||+|||++.++.+||+|||+++...    
T Consensus       232 ~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~--~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~  304 (446)
T 4ejn_A          232 GGELFFHLSRER-----VFSEDRARFYGAEIVSALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGA  304 (446)
T ss_dssp             SCBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHH--HTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC---
T ss_pred             CCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHhh--cCCEEECCCCHHHEEECCCCCEEEccCCCceeccCCCc
Confidence            999999997543     58899999999999999999995  1459999999999999999999999999987642    


Q ss_pred             --CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          487 --TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       487 --~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                        ....+|..|+|||++       ....++.++|||||||++|||+||+.||......  ..........         .
T Consensus       305 ~~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~i~~~~---------~  366 (446)
T 4ejn_A          305 TMKTFCGTPEYLAPEVL-------EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE--KLFELILMEE---------I  366 (446)
T ss_dssp             --CCSSSCGGGCCHHHH-------HTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCC---------C
T ss_pred             ccccccCCccccCHhhc-------CCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHH--HHHHHHHhCC---------C
Confidence              234568899999975       3456788999999999999999999999754322  1111111110         0


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRP-----NMSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RP-----s~~~v~~  600 (640)
                      ..+....   .++.+++..||+.||++||     ++.|+++
T Consensus       367 ~~p~~~~---~~~~~li~~~L~~dP~~R~~~~~~t~~ell~  404 (446)
T 4ejn_A          367 RFPRTLG---PEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ  404 (446)
T ss_dssp             CCCTTSC---HHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             CCCccCC---HHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence            0111112   3466778889999999999     8888864

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-38  Score=333.61  Aligned_cols=251  Identities=16%  Similarity=0.114  Sum_probs=191.6

Q ss_pred             hhccccccCcceEEEEEeCC---------CcEEEEEEeccccchHHHHHHHHHHhccCCCcccc---------------e
Q 006559          337 SAELLGKGCVGATYKVVLDG---------GDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVS---------------I  392 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~---------~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~---------------l  392 (640)
                      ..+.||+|+||.||+|+...         ++.||||.+...   +.+.+|++++++++||||++               +
T Consensus        46 ~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~---~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~~  122 (352)
T 2jii_A           46 LKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD---GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTC  122 (352)
T ss_dssp             EEEEEEEETTEEEEEEEECC-----------CEEEEEEETT---STHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCCC
T ss_pred             EEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc---chHHHHHHHHHHhcccchhhhhhhhccCCccCccch
Confidence            35789999999999999764         788999998754   45778899999999999988               6


Q ss_pred             eEEEEc-CCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC
Q 006559          393 RAYCNG-KDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL  471 (640)
Q Consensus       393 ~~~~~~-~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~  471 (640)
                      ++++.. .+..++||||+ +|+|.+++....   ...+++..++.++.|++.||+|||+.   +|+||||||+|||++.+
T Consensus       123 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~---~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIl~~~~  195 (352)
T 2jii_A          123 MGFGVHQDKYRFLVLPSL-GRSLQSALDVSP---KHVLSERSVLQVACRLLDALEFLHEN---EYVHGNVTAENIFVDPE  195 (352)
T ss_dssp             CEEEEETTTEEEEEEECC-CEEHHHHHHHSG---GGCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCGGGEEEETT
T ss_pred             hhccccCCcEEEEEecCC-CcCHHHHHHhCC---cCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEEcCC
Confidence            777765 67899999999 999999998642   12589999999999999999999954   59999999999999999


Q ss_pred             C--CeEEccCCcccccCC-------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCC
Q 006559          472 G--NACISDIGVHQLFHT-------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAK  536 (640)
Q Consensus       472 ~--~~kl~DfGl~~~~~~-------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~  536 (640)
                      +  .+||+|||+++.+..             ...++..|+|||++       ....++.++|||||||++|||+||+.||
T Consensus       196 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~~~Di~slG~il~el~~g~~pf  268 (352)
T 2jii_A          196 DQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLH-------KGCGPSRRSDLQSLGYCMLKWLYGFLPW  268 (352)
T ss_dssp             EEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHH-------TTCCCCHHHHHHHHHHHHHHHHHSCCTT
T ss_pred             CCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHH-------ccCCCCchhhHHHHHHHHHHHHhCCCCc
Confidence            8  999999999976532             22568899999965       3345778999999999999999999999


Q ss_pred             CCCCcchH---HHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 006559          537 GDGELGIV---KWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGS  610 (640)
Q Consensus       537 ~~~~~~~~---~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~  610 (640)
                      ........   ..........  ....+.... ....   ..++.+++..||+.||++||++.++++.|+++..+..
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~---~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~  339 (352)
T 2jii_A          269 TNCLPNTEDIMKQKQKFVDKP--GPFVGPCGH-WIRP---SETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLR  339 (352)
T ss_dssp             GGGTTCHHHHHHHHHHHHHSC--CCEECTTSC-EECC---CHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             ccCCcCHHHHHHHHHhccCCh--hhhhhhccc-cCCC---cHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhcC
Confidence            75322211   1111111110  001110000 0011   2346677888999999999999999999999886644

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=1.8e-37  Score=320.51  Aligned_cols=249  Identities=20%  Similarity=0.322  Sum_probs=185.2

Q ss_pred             hhccccccCcceEEEEEeC----CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCC-----eEE
Q 006559          337 SAELLGKGCVGATYKVVLD----GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKD-----ELF  403 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~----~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~-----~~~  403 (640)
                      ..+.||+|+||.||+|+..    .+..||||.+....    ..+.+.+|++++++++||||+++++++...+     ..+
T Consensus        38 ~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~  117 (313)
T 3brb_A           38 LGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPM  117 (313)
T ss_dssp             EEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-------CEE
T ss_pred             eccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccccCCcccE
Confidence            4578999999999999854    24479999987542    2355788999999999999999999998754     359


Q ss_pred             EEEeccCCCCHHHhhccCCC-CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcc
Q 006559          404 LVYDYLPHGSLHSLLHGSRG-PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVH  482 (640)
Q Consensus       404 lV~Ey~~~gsL~~~l~~~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~  482 (640)
                      +||||+++|+|.+++..... .....+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||++
T Consensus       118 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dikp~NIli~~~~~~kl~Dfg~~  194 (313)
T 3brb_A          118 VILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSN---RNFLHRDLAARNCMLRDDMTVCVADFGLS  194 (313)
T ss_dssp             EEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHT---TTCCCCCCSGGGEEECTTSCEEECSCSCC
T ss_pred             EEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCcEEEeecCcc
Confidence            99999999999999853321 122368999999999999999999994   56999999999999999999999999998


Q ss_pred             cccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcc
Q 006559          483 QLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQD  553 (640)
Q Consensus       483 ~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~  553 (640)
                      +.....        ..++..|+|||++       ....++.++|||||||++|||+| |+.||.......  ........
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~--~~~~~~~~  265 (313)
T 3brb_A          195 KKIYSGDYYRQGRIAKMPVKWIAIESL-------ADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHE--MYDYLLHG  265 (313)
T ss_dssp             ----------------CCGGGSCHHHH-------HSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG--HHHHHHTT
T ss_pred             eecccccccCcccccCCCccccCchhh-------cCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHH--HHHHHHcC
Confidence            765321        2346689999964       34567789999999999999999 889987543221  11111111


Q ss_pred             cccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          554 ESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       554 ~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ...        ....   ....++.+++..||+.||++||++.++++.|+++...
T Consensus       266 ~~~--------~~~~---~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~  309 (313)
T 3brb_A          266 HRL--------KQPE---DCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLES  309 (313)
T ss_dssp             CCC--------CCBT---TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCC--------CCCc---cccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            000        0011   1223567788889999999999999999999998754

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=2.7e-38  Score=337.83  Aligned_cols=241  Identities=17%  Similarity=0.240  Sum_probs=187.4

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .++||+|+||.||+|+.. +++.||+|+++..     ...+.+.+|+++++.++|||||+++++|.+.+..|+|||||++
T Consensus        74 ~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lV~E~~~g  153 (410)
T 3v8s_A           74 VKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPG  153 (410)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred             EEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCC
Confidence            468999999999999975 5789999998753     2234577899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.++++..      .+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....    
T Consensus       154 g~L~~~l~~~------~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~  224 (410)
T 3v8s_A          154 GDLVNLMSNY------DVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMV  224 (410)
T ss_dssp             EEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEE
T ss_pred             CcHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCCEEEeccceeEeeccCCcc
Confidence            9999999753      378889999999999999999954   599999999999999999999999999976543    


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         ...+|..|+|||++.....   ...++.++|||||||++|||+||+.||......  ...+.......     ....
T Consensus       225 ~~~~~~gt~~Y~APE~l~~~~~---~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~--~~~~~i~~~~~-----~~~~  294 (410)
T 3v8s_A          225 RCDTAVGTPDYISPEVLKSQGG---DGYYGRECDWWSVGVFLYEMLVGDTPFYADSLV--GTYSKIMNHKN-----SLTF  294 (410)
T ss_dssp             ECCSCCSCGGGCCHHHHHTTTT---TCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHTHHH-----HCCC
T ss_pred             cccCCcCCccccCHHHhhccCC---CcCCCCcceEecchHHHHHHHhCCCCCCCCChh--hHHHHHHhccc-----cccC
Confidence               3457899999998643211   112678999999999999999999999754321  11111111000     0000


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCC--CCCHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKD--RPNMSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~--RPs~~~v~~  600 (640)
                      ......+.   ++.+++.+|+..+|++  ||++.||.+
T Consensus       295 p~~~~~s~---~~~~li~~lL~~~~~rlgR~~~~ei~~  329 (410)
T 3v8s_A          295 PDDNDISK---EAKNLICAFLTDREVRLGRNGVEEIKR  329 (410)
T ss_dssp             CTTCCCCH---HHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred             CCcccccH---HHHHHHHHHccChhhhCCCCCHHHHhc
Confidence            00011222   4556777799999988  999999875

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=3.8e-38  Score=329.89  Aligned_cols=231  Identities=18%  Similarity=0.267  Sum_probs=181.8

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      .+.||+|+||.||+|+.. +++.||+|+++...     ..+.+.+|..++.++ +||||+++++++...+..|+||||++
T Consensus        14 ~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~e~~~   93 (345)
T 3a8x_A           14 LRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVN   93 (345)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCC
T ss_pred             EEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEEEeCCC
Confidence            568999999999999975 57889999997542     224467788888877 89999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC----
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH----  486 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~----  486 (640)
                      +|+|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...    
T Consensus        94 gg~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~~  165 (345)
T 3a8x_A           94 GGDLMFHMQRQR-----KLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD  165 (345)
T ss_dssp             SCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTTC
T ss_pred             CCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEeccccccccCCCC
Confidence            999999997543     588999999999999999999954   59999999999999999999999999998632    


Q ss_pred             --CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc------hHHH-HHHhhcccccc
Q 006559          487 --TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG------IVKW-VQMMGQDESAW  557 (640)
Q Consensus       487 --~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~------~~~~-~~~~~~~~~~~  557 (640)
                        ....+|..|+|||++.       ...++.++|||||||++|||++|+.||......      .... .+...      
T Consensus       166 ~~~~~~gt~~y~aPE~~~-------~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~------  232 (345)
T 3a8x_A          166 TTSTFCGTPNYIAPEILR-------GEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVIL------  232 (345)
T ss_dssp             CBCCCCSCGGGCCHHHHT-------TCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHH------
T ss_pred             cccccCCCccccCccccC-------CCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHH------
Confidence              2345688999999753       345678999999999999999999999642110      0011 11111      


Q ss_pred             cccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCH
Q 006559          558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNM  595 (640)
Q Consensus       558 ~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~  595 (640)
                         ......+...+   .++.+++.+||+.||++||++
T Consensus       233 ---~~~~~~p~~~s---~~~~~li~~lL~~dP~~R~~~  264 (345)
T 3a8x_A          233 ---EKQIRIPRSLS---VKAASVLKSFLNKDPKERLGC  264 (345)
T ss_dssp             ---HCCCCCCTTSC---HHHHHHHHHHTCSSTTTSTTC
T ss_pred             ---cCCCCCCCCCC---HHHHHHHHHHhcCCHhHCCCC
Confidence               11111111222   346667788999999999995

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.6e-38  Score=327.75  Aligned_cols=243  Identities=17%  Similarity=0.227  Sum_probs=184.9

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEecccc----chHHHHHHHHHHhccCC--CcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERK----KKREVDEWLRVIGGLRH--SNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H--~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..+.||+|+||.||++...+++.||||++....    ..+.+.+|++++++++|  |||+++++++...+..++||| +.
T Consensus        13 i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e-~~   91 (343)
T 3dbq_A           13 ILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CG   91 (343)
T ss_dssp             EEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEC-CC
T ss_pred             EEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEEe-CC
Confidence            356899999999999998889999999987542    23567889999999987  999999999999999999999 56


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                      +|+|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||++ ++.+||+|||+++....   
T Consensus        92 ~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~  162 (343)
T 3dbq_A           92 NIDLNSWLKKKK-----SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT  162 (343)
T ss_dssp             SEEHHHHHHHSC-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCCC-----
T ss_pred             CCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeecccccccCcccc
Confidence            889999998653     588999999999999999999954   599999999999997 57899999999987532   


Q ss_pred             -----CccccccccCCccccCCCCc----cccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccc
Q 006559          488 -----PFFINDAYNAPELKFNNNNN----YSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE  558 (640)
Q Consensus       488 -----~~~~~~~y~aPE~~~~~~~~----~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  558 (640)
                           ...+|..|+|||++......    .....++.++|||||||++|||+||+.||.................. .. 
T Consensus       163 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~-~~-  240 (343)
T 3dbq_A          163 SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNH-EI-  240 (343)
T ss_dssp             -------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTS-CC-
T ss_pred             cccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCc-cc-
Confidence                 23568899999976431111    11256788999999999999999999999753322222211111110 00 


Q ss_pred             ccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       559 ~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                            ..+...   ..++.+++..||+.||++|||+.|+++
T Consensus       241 ------~~~~~~---~~~l~~li~~~L~~dp~~Rpt~~e~l~  273 (343)
T 3dbq_A          241 ------EFPDIP---EKDLQDVLKCCLKRDPKQRISIPELLA  273 (343)
T ss_dssp             ------CCCCCS---CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ------CCcccC---CHHHHHHHHHHcCCChhHCCCHHHHHh
Confidence                  001111   124667788899999999999999975

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=1.5e-37  Score=322.45  Aligned_cols=239  Identities=17%  Similarity=0.255  Sum_probs=190.4

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc--------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK--------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~--------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||.||+|+.. +|..||||.+....        ..+.+.+|+.++++++||||+++++++...+..++|||
T Consensus        16 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   95 (321)
T 2a2a_A           16 IGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVVLILE   95 (321)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             EeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEEE
Confidence            3578999999999999965 58899999987542        24678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC----CeEEccCCccc
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG----NACISDIGVHQ  483 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~----~~kl~DfGl~~  483 (640)
                      |+++|+|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++    .+||+|||+++
T Consensus        96 ~~~~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~  167 (321)
T 2a2a_A           96 LVSGGELFDFLAQKE-----SLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAH  167 (321)
T ss_dssp             CCCSCBHHHHHHTCS-----CEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCTTCE
T ss_pred             cCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcCCEEEccCccce
Confidence            999999999997543     589999999999999999999954   599999999999999888    79999999998


Q ss_pred             ccCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccc
Q 006559          484 LFHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE  558 (640)
Q Consensus       484 ~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  558 (640)
                      ....     ...++..|+|||++       ....++.++|||||||++|||+||+.||.....  ............   
T Consensus       168 ~~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~~~i~~~~~---  235 (321)
T 2a2a_A          168 EIEDGVEFKNIFGTPEFVAPEIV-------NYEPLGLEADMWSIGVITYILLSGASPFLGDTK--QETLANITSVSY---  235 (321)
T ss_dssp             ECCTTCCCCCCCSCGGGCCHHHH-------TTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH--HHHHHHHHTTCC---
T ss_pred             ecCccccccccCCCCCccCcccc-------cCCCCCCccccHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHhccc---
Confidence            7643     23468899999965       334567899999999999999999999975322  111111111100   


Q ss_pred             ccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       559 ~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..+...     .......+.+++..||+.||++|||+.|+++
T Consensus       236 ~~~~~~-----~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~  272 (321)
T 2a2a_A          236 DFDEEF-----FSHTSELAKDFIRKLLVKETRKRLTIQEALR  272 (321)
T ss_dssp             CCCHHH-----HTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred             ccChhh-----hcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence            011110     0112234677888999999999999999975

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=7.3e-38  Score=323.90  Aligned_cols=250  Identities=22%  Similarity=0.277  Sum_probs=190.8

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEE----cCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCN----GKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~----~~~~~~lV~Ey~  409 (640)
                      ..+.||+|+||.||+++. .+++.||||++...  ...+.+.+|++++++++||||+++++++.    .....++||||+
T Consensus        33 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~  112 (317)
T 2buj_A           33 FIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFF  112 (317)
T ss_dssp             EEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEEEEeC
Confidence            367899999999999996 67889999988644  34566889999999999999999999987    345789999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-  488 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-  488 (640)
                      ++|+|.+++..... ....+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++..... 
T Consensus       113 ~~~~L~~~l~~~~~-~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~  188 (317)
T 2buj_A          113 KRGTLWNEIERLKD-KGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHV  188 (317)
T ss_dssp             TTCBHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSSCEESCEEE
T ss_pred             CCCcHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCcchhccccc
Confidence            99999999875321 123589999999999999999999954   5999999999999999999999999998765321 


Q ss_pred             --------------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCC---CCcchHHHHHHhh
Q 006559          489 --------------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGD---GELGIVKWVQMMG  551 (640)
Q Consensus       489 --------------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~---~~~~~~~~~~~~~  551 (640)
                                    ..++..|+|||++....    ...++.++|||||||++|||++|+.||..   ...........  
T Consensus       189 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~--  262 (317)
T 2buj_A          189 EGSRQALTLQDWAAQRCTISYRAPELFSVQS----HCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQN--  262 (317)
T ss_dssp             ESHHHHHHHHHHHHHHSCGGGCCGGGSSCCS----EEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHC--
T ss_pred             ccccccccccccccccCCcccCCHhHhccCC----CcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhc--
Confidence                          12378899999753221    12357899999999999999999999852   11111111100  


Q ss_pred             cccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          552 QDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       552 ~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                       .        .......   .....+.+++.+||+.||++||++.++++.|+++...
T Consensus       263 -~--------~~~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~  307 (317)
T 2buj_A          263 -Q--------LSIPQSP---RHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPP  307 (317)
T ss_dssp             -C----------CCCCT---TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCC
T ss_pred             -c--------CCCCccc---cCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCC
Confidence             0        0000011   1123567788889999999999999999999998754

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=1.4e-37  Score=315.59  Aligned_cols=235  Identities=20%  Similarity=0.321  Sum_probs=173.6

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+. .+++.||||.+....     ..+.+.+|++++++++||||+++++++...+..++||||+++
T Consensus        16 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   95 (278)
T 3cok_A           16 GNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVLEMCHN   95 (278)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred             eeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEEEecCCC
Confidence            56899999999999996 578899999986542     235688899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....    .++++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++.....    
T Consensus        96 ~~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~  168 (278)
T 3cok_A           96 GEMNRYLKNRV----KPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEK  168 (278)
T ss_dssp             EEHHHHHHTCS----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCCTTCEECC-----
T ss_pred             CcHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEeecceeeccCCCCc
Confidence            99999998543    2589999999999999999999954   599999999999999999999999999887542    


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                        ...++..|+|||++.       ...++.++|||||||++|||+||+.||........  ....         ......
T Consensus       169 ~~~~~~~~~y~aPE~~~-------~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~--~~~~---------~~~~~~  230 (278)
T 3cok_A          169 HYTLCGTPNYISPEIAT-------RSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT--LNKV---------VLADYE  230 (278)
T ss_dssp             ------------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-------C---------CSSCCC
T ss_pred             ceeccCCCCcCCcchhc-------CCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH--HHHH---------hhcccC
Confidence              234578899999653       34567899999999999999999999975332110  0000         000011


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .+...   ..++.+++.+||+.||++|||+.++++
T Consensus       231 ~~~~~---~~~~~~li~~~l~~dp~~Rps~~~~l~  262 (278)
T 3cok_A          231 MPSFL---SIEAKDLIHQLLRRNPADRLSLSSVLD  262 (278)
T ss_dssp             CCTTS---CHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             Ccccc---CHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence            11111   234667888899999999999998875

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.8e-38  Score=328.05  Aligned_cols=229  Identities=19%  Similarity=0.246  Sum_probs=184.6

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc----------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK----------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~----------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~  406 (640)
                      .+.||+|+||.||+|+. .++..||||.+....          ..+.+.+|++++++++||||+++++++...+..++||
T Consensus        29 ~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~~~~lv~  108 (335)
T 3dls_A           29 MSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQGFFQLVM  108 (335)
T ss_dssp             EEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             EeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCCEEEEEE
Confidence            46899999999999985 568889999987542          2234667999999999999999999999999999999


Q ss_pred             eccCCC-CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccccc
Q 006559          407 DYLPHG-SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF  485 (640)
Q Consensus       407 Ey~~~g-sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~  485 (640)
                      ||+..| +|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++..
T Consensus       109 e~~~~g~~l~~~~~~~~-----~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~  180 (335)
T 3dls_A          109 EKHGSGLDLFAFIDRHP-----RLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDFTIKLIDFGSAAYL  180 (335)
T ss_dssp             ECCTTSCBHHHHHHTCC-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EeCCCCccHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCCcEEEeecccceEC
Confidence            999887 9999998653     589999999999999999999954   5999999999999999999999999999876


Q ss_pred             CCC-----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccccc
Q 006559          486 HTP-----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVF  560 (640)
Q Consensus       486 ~~~-----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  560 (640)
                      ...     ..+|..|+|||++...      ..++.++|||||||++|||++|+.||.....       .      .....
T Consensus       181 ~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~~DiwslG~il~el~~g~~pf~~~~~-------~------~~~~~  241 (335)
T 3dls_A          181 ERGKLFYTFCGTIEYCAPEVLMGN------PYRGPELEMWSLGVTLYTLVFEENPFCELEE-------T------VEAAI  241 (335)
T ss_dssp             CTTCCBCEECSCGGGCCHHHHTTC------CBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG-------G------TTTCC
T ss_pred             CCCCceeccCCCccccChhhhcCC------CCCCCcccchhHHHHHHHHHhCCCchhhHHH-------H------Hhhcc
Confidence            432     3468899999975322      1236789999999999999999999964110       0      00000


Q ss_pred             chhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          561 DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       561 d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .    .+...   ..++.+++..||+.||++|||+.++++
T Consensus       242 ~----~~~~~---~~~l~~li~~~L~~dP~~Rps~~ell~  274 (335)
T 3dls_A          242 H----PPYLV---SKELMSLVSGLLQPVPERRTTLEKLVT  274 (335)
T ss_dssp             C----CSSCC---CHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             C----CCccc---CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            1    11111   124667788899999999999999976

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=2.3e-38  Score=330.12  Aligned_cols=250  Identities=20%  Similarity=0.315  Sum_probs=193.1

Q ss_pred             hhccccccCcceEEEEEeCC-C-----cEEEEEEecccc---chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEE
Q 006559          337 SAELLGKGCVGATYKVVLDG-G-----DVVVVKRIRERK---KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVY  406 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~-~-----~~vavK~l~~~~---~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~  406 (640)
                      ..+.||+|+||.||+|+... +     ..||+|.+....   ..+.+.+|+++++++ +||||+++++++...+..++||
T Consensus        50 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~  129 (333)
T 2i1m_A           50 FGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVIT  129 (333)
T ss_dssp             EEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             eeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCceEEEE
Confidence            35789999999999999643 2     379999997652   345678899999999 8999999999999999999999


Q ss_pred             eccCCCCHHHhhccCCC---------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEc
Q 006559          407 DYLPHGSLHSLLHGSRG---------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACIS  477 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~---------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~  477 (640)
                      ||+++|+|.+++.....         .....+++..++.++.|++.||+|||+.   +|+||||||+|||++.++.+||+
T Consensus       130 e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~  206 (333)
T 2i1m_A          130 EYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVLLTNGHVAKIG  206 (333)
T ss_dssp             ECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGCEEEGGGEEEBC
T ss_pred             ecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcccceEEECCCCeEEEC
Confidence            99999999999864310         0012578999999999999999999954   59999999999999999999999


Q ss_pred             cCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHH
Q 006559          478 DIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQ  548 (640)
Q Consensus       478 DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~  548 (640)
                      |||+++.....        ..++..|+|||++       ....++.++|||||||++|||+| |+.||.........+ +
T Consensus       207 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~-~  278 (333)
T 2i1m_A          207 DFGLARDIMNDSNYIVKGNARLPVKWMAPESI-------FDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFY-K  278 (333)
T ss_dssp             CCGGGCCGGGCTTSEECSSCEECGGGSCHHHH-------HHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHH-H
T ss_pred             ccccccccccccceeecCCCCCCccccCHHHh-------ccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHH-H
Confidence            99999865321        2235679999964       34457789999999999999999 999997543222111 1


Q ss_pred             HhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          549 MMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       549 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      .......        ...+..   ....+.+++..||+.||++|||+.++++.|+++..+
T Consensus       279 ~~~~~~~--------~~~~~~---~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~  327 (333)
T 2i1m_A          279 LVKDGYQ--------MAQPAF---APKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQE  327 (333)
T ss_dssp             HHHHTCC--------CCCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHhcCCC--------CCCCCC---CCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHHh
Confidence            1110000        000111   123467788889999999999999999999987643

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=3.9e-38  Score=326.68  Aligned_cols=249  Identities=22%  Similarity=0.301  Sum_probs=194.2

Q ss_pred             hhccccccCcceEEEEEeC------CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVLD------GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~------~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||.||+|+..      .+..||||.+....   ....+.+|++++++++||||+++++++...+..++|||
T Consensus        29 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e  108 (322)
T 1p4o_A           29 MSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIME  108 (322)
T ss_dssp             EEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             eeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCCccEEEEE
Confidence            3578999999999999864      36789999997653   23457889999999999999999999999999999999


Q ss_pred             ccCCCCHHHhhccCCC-----CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcc
Q 006559          408 YLPHGSLHSLLHGSRG-----PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVH  482 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~-----~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~  482 (640)
                      |+++|+|.+++.....     ....++++..++.++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++
T Consensus       109 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~NIli~~~~~~kl~Dfg~~  185 (322)
T 1p4o_A          109 LMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMT  185 (322)
T ss_dssp             CCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECTTCCEEECCTTCC
T ss_pred             eCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCccceEEEcCCCeEEECcCccc
Confidence            9999999999874320     1112568999999999999999999954   5999999999999999999999999998


Q ss_pred             cccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcc
Q 006559          483 QLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQD  553 (640)
Q Consensus       483 ~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~  553 (640)
                      +.....        ..++..|+|||++       ....++.++|||||||++|||+| |+.||.....  ....+.....
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~--~~~~~~~~~~  256 (322)
T 1p4o_A          186 RDIYETDYYRKGGKGLLPVRWMSPESL-------KDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN--EQVLRFVMEG  256 (322)
T ss_dssp             CGGGGGGCEEGGGSSEECGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH--HHHHHHHHTT
T ss_pred             cccccccccccccCCCCCCCccChhhh-------ccCCCCchhhHHHHHHHHHHHHhcCCCccccCCH--HHHHHHHHcC
Confidence            765321        2336789999964       34557789999999999999999 8999875322  1112211111


Q ss_pred             cccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          554 ESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       554 ~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ...    .    ...   .....+.+++.+||+.||++|||+.++++.|+++...
T Consensus       257 ~~~----~----~~~---~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~~  300 (322)
T 1p4o_A          257 GLL----D----KPD---NCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEP  300 (322)
T ss_dssp             CCC----C----CCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCT
T ss_pred             CcC----C----CCC---CCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhcc
Confidence            100    0    011   1223466778889999999999999999999987653

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=8.6e-38  Score=333.03  Aligned_cols=186  Identities=26%  Similarity=0.452  Sum_probs=150.5

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccC-CCcccceeEEEEcCC--eEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLR-HSNIVSIRAYCNGKD--ELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~--~~~lV~Ey~  409 (640)
                      .+.||+|+||.||+|+. .+++.||||++...    ...+.+.+|+.++.++. ||||+++++++...+  ..|+|||||
T Consensus        14 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~lv~e~~   93 (388)
T 3oz6_A           14 VKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVYLVFDYM   93 (388)
T ss_dssp             EEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEEEEEECC
T ss_pred             EEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEEEEeccc
Confidence            56899999999999985 56889999998643    23345678899999997 999999999997544  799999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--  487 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--  487 (640)
                      + |+|.+++...      .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+..  
T Consensus        94 ~-~~L~~~~~~~------~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~  163 (388)
T 3oz6_A           94 E-TDLHAVIRAN------ILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIR  163 (388)
T ss_dssp             S-EEHHHHHHHT------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEESSSCC
T ss_pred             C-cCHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecCCcccccccccc
Confidence            8 6999998753      478899999999999999999954   599999999999999999999999999976421  


Q ss_pred             -------------------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 006559          488 -------------------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG  539 (640)
Q Consensus       488 -------------------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~  539 (640)
                                               ...+|..|+|||++.+      ...++.++|||||||++|||++|+.||.+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~~DiwSlG~il~ell~g~~pf~~~  234 (388)
T 3oz6_A          164 RVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLG------STKYTKGIDMWSLGCILGEILCGKPIFPGS  234 (388)
T ss_dssp             CCCCCGGGCCC---------------CCCGGGGCCHHHHTT------CCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cccccccccccccccccccccccccCCcccCCcCCHHHhcC------CCCCCChhhHHHHHHHHHHHHhCCCCCCCC
Confidence                                     2356889999997632      245778999999999999999999999754

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=4.2e-38  Score=325.39  Aligned_cols=250  Identities=21%  Similarity=0.308  Sum_probs=193.4

Q ss_pred             hhccccccCcceEEEEEe------CCCcEEEEEEecccc---chHHHHHHHHHHhcc-CCCcccceeEEEEcCC-eEEEE
Q 006559          337 SAELLGKGCVGATYKVVL------DGGDVVVVKRIRERK---KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKD-ELFLV  405 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~------~~~~~vavK~l~~~~---~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~-~~~lV  405 (640)
                      ..+.||+|+||.||+|+.      .+++.||||.++...   ..+.+.+|++++.++ +||||+++++++...+ ..++|
T Consensus        31 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~~lv  110 (316)
T 2xir_A           31 LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVI  110 (316)
T ss_dssp             EEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEE
T ss_pred             eeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCCCceEEE
Confidence            357899999999999984      345789999997653   235678899999999 7899999999998754 59999


Q ss_pred             EeccCCCCHHHhhccCCCCC-----------CCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCe
Q 006559          406 YDYLPHGSLHSLLHGSRGPG-----------RMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNA  474 (640)
Q Consensus       406 ~Ey~~~gsL~~~l~~~~~~~-----------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~  474 (640)
                      |||+++|+|.+++.......           ...+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+
T Consensus       111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dikp~Nil~~~~~~~  187 (316)
T 2xir_A          111 VEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVV  187 (316)
T ss_dssp             EECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCE
T ss_pred             EEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCE
Confidence            99999999999998654210           12388999999999999999999954   59999999999999999999


Q ss_pred             EEccCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHH
Q 006559          475 CISDIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVK  545 (640)
Q Consensus       475 kl~DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~  545 (640)
                      ||+|||+++.....        ..++..|+|||++       ....++.++|||||||++|||+| |+.||.........
T Consensus       188 kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~  260 (316)
T 2xir_A          188 KICDFGLARDIYKDPDYVRKGDARLPLKWMAPETI-------FDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEF  260 (316)
T ss_dssp             EECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHH
T ss_pred             EECCCccccccccCccceeccCCCcceeecCchhh-------ccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHHH
Confidence            99999999865321        2346689999965       34567789999999999999999 99999754322211


Q ss_pred             HHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          546 WVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       546 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                       ..........        .....   ...++.+++..||+.||++|||+.++++.|+++...
T Consensus       261 -~~~~~~~~~~--------~~~~~---~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  311 (316)
T 2xir_A          261 -CRRLKEGTRM--------RAPDY---TTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  311 (316)
T ss_dssp             -HHHHHHTCCC--------CCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             -HHHhccCccC--------CCCCC---CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence             1111111000        00111   123467788889999999999999999999998753

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=2.6e-38  Score=334.23  Aligned_cols=233  Identities=19%  Similarity=0.264  Sum_probs=177.9

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHHHH-HhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWLRV-IGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~~~-l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ..++||+|+||.||+|+.. ++..||||+++...     ..+.+..|..+ ++.++||||+++++++...+..|+||||+
T Consensus        42 ~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv~E~~  121 (373)
T 2r5t_A           42 FLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYI  121 (373)
T ss_dssp             EEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             EEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEEEeCC
Confidence            3578999999999999975 57889999997652     12334455554 57789999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC---
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH---  486 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~---  486 (640)
                      ++|+|.+++....     .+++.....++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++...   
T Consensus       122 ~gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~  193 (373)
T 2r5t_A          122 NGGELFYHLQRER-----CFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHN  193 (373)
T ss_dssp             CSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCC
T ss_pred             CCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEeeCccccccccCC
Confidence            9999999997543     478889999999999999999954   59999999999999999999999999997632   


Q ss_pred             ---CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchh
Q 006559          487 ---TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       487 ---~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                         ....+|..|+|||++.       ...++.++|||||||++|||++|+.||.....  .+..+.....         .
T Consensus       194 ~~~~~~~gt~~y~aPE~~~-------~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~--~~~~~~i~~~---------~  255 (373)
T 2r5t_A          194 STTSTFCGTPEYLAPEVLH-------KQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT--AEMYDNILNK---------P  255 (373)
T ss_dssp             CCCCSBSCCCCCCCHHHHT-------TCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBH--HHHHHHHHHS---------C
T ss_pred             CccccccCCccccCHHHhC-------CCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH--HHHHHHHHhc---------c
Confidence               2345789999999753       34577899999999999999999999975432  1111111111         1


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIV  598 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v  598 (640)
                      .........   .+.+++..||+.||++||++.+.
T Consensus       256 ~~~~~~~~~---~~~~li~~lL~~dp~~R~~~~~~  287 (373)
T 2r5t_A          256 LQLKPNITN---SARHLLEGLLQKDRTKRLGAKDD  287 (373)
T ss_dssp             CCCCSSSCH---HHHHHHHHHTCSSGGGSTTTTTT
T ss_pred             cCCCCCCCH---HHHHHHHHHcccCHHhCCCCCCC
Confidence            111112222   45667778999999999998643

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.5e-38  Score=335.89  Aligned_cols=201  Identities=23%  Similarity=0.401  Sum_probs=154.7

Q ss_pred             ChHHHHHHhhccccccCcceEEEEEeC---CCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEc--CCeEE
Q 006559          329 NVGDLLKSSAELLGKGCVGATYKVVLD---GGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNG--KDELF  403 (640)
Q Consensus       329 ~~~~~~~~~~~~iG~G~fg~Vy~~~~~---~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~--~~~~~  403 (640)
                      .+++.+.-..++||+|+||.||+|+..   ++..||||++........+.+|++++++++|||||++++++..  ....|
T Consensus        17 ~~~~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~   96 (405)
T 3rgf_A           17 RVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVW   96 (405)
T ss_dssp             CHHHHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEE
T ss_pred             hhhhhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEE
Confidence            344444334568999999999999965   4778999999877666778899999999999999999999954  67899


Q ss_pred             EEEeccCCCCHHHhhccCC----CCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE----CCCCCeE
Q 006559          404 LVYDYLPHGSLHSLLHGSR----GPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV----DQLGNAC  475 (640)
Q Consensus       404 lV~Ey~~~gsL~~~l~~~~----~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl----~~~~~~k  475 (640)
                      +||||++ |+|.+++....    ......+++..+..++.|++.||+|||+.   +|+||||||+|||+    +.++.+|
T Consensus        97 lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~k  172 (405)
T 3rgf_A           97 LLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVK  172 (405)
T ss_dssp             EEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTCEE
T ss_pred             EEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCcEE
Confidence            9999997 58887775221    11122488999999999999999999954   59999999999999    7789999


Q ss_pred             EccCCcccccCC---------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 006559          476 ISDIGVHQLFHT---------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG  539 (640)
Q Consensus       476 l~DfGl~~~~~~---------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~  539 (640)
                      |+|||+++....         ...+|..|+|||++.+      ...++.++|||||||++|||+||+.||...
T Consensus       173 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~~DiwSlG~il~ell~g~~pf~~~  239 (405)
T 3rgf_A          173 IADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLG------ARHYTKAIDIWAIGCIFAELLTSEPIFHCR  239 (405)
T ss_dssp             ECCTTCCC----------------CCCTTCCHHHHTT------CCSCCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred             EEECCCceecCCCCcccccCCCceecCcccCchhhcC------CCcccchhhhHHHHHHHHHHHhCCCCCCCc
Confidence            999999987542         2345889999997632      234778999999999999999999999743

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=2.5e-37  Score=314.49  Aligned_cols=248  Identities=19%  Similarity=0.299  Sum_probs=194.9

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc--------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK--------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~--------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||.||+|+.. +++.||||.++...        ..+.+.+|+.++++++||||+++++++...+..++|||
T Consensus         9 ~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   88 (283)
T 3bhy_A            9 MGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVVLILE   88 (283)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             hHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEEEEEe
Confidence            3568999999999999975 68899999986541        25678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC----CeEEccCCccc
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG----NACISDIGVHQ  483 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~----~~kl~DfGl~~  483 (640)
                      |+++++|.+++....     .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++    .+||+|||+++
T Consensus        89 ~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~  160 (283)
T 3bhy_A           89 LVSGGELFDFLAEKE-----SLTEDEATQFLKQILDGVHYLHS---KRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAH  160 (283)
T ss_dssp             CCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred             ecCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCChHHEEEecCCCCCCceEEEecccce
Confidence            999999999997543     58999999999999999999995   4599999999999999877    89999999998


Q ss_pred             ccCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccc
Q 006559          484 LFHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE  558 (640)
Q Consensus       484 ~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  558 (640)
                      ....     ...++..|+|||++       ....++.++||||||+++|||+||+.||......  ...........   
T Consensus       161 ~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~---  228 (283)
T 3bhy_A          161 KIEAGNEFKNIFGTPEFVAPEIV-------NYEPLGLEADMWSIGVITYILLSGASPFLGETKQ--ETLTNISAVNY---  228 (283)
T ss_dssp             ECC--------CCCGGGCCHHHH-------TTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHTTCC---
T ss_pred             eccCCCcccccCCCcCccCccee-------cCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchH--HHHHHhHhccc---
Confidence            7543     23468889999965       3345778999999999999999999999754321  11111111000   


Q ss_pred             ccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhhccC
Q 006559          559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDIRTKG  609 (640)
Q Consensus       559 ~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i~~~~  609 (640)
                      ..+..     ........+.+++.+||+.||++||++.++++  .+++++...
T Consensus       229 ~~~~~-----~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~~~  276 (283)
T 3bhy_A          229 DFDEE-----YFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRRRN  276 (283)
T ss_dssp             CCCHH-----HHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHHHCC
T ss_pred             CCcch-----hcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHHHHh
Confidence            00100     01112235677888999999999999999986  677776553

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=8e-38  Score=340.73  Aligned_cols=180  Identities=22%  Similarity=0.345  Sum_probs=143.5

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcC-----CeEEEEE
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGK-----DELFLVY  406 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~-----~~~~lV~  406 (640)
                      ..++||+|+||+||+|+.. +++.||||++...    ...+.+.+|++++++++|||||++++++...     ...|+||
T Consensus        57 ~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~lv~  136 (458)
T 3rp9_A           57 IRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDELYVVL  136 (458)
T ss_dssp             ECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEE
T ss_pred             EeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceEEEEE
Confidence            3578999999999999854 6889999998653    2345678899999999999999999999543     5799999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||+. |+|.+++....     .+++..+..++.||+.||+|||+.   +||||||||+|||++.++.+||+|||+++...
T Consensus       137 e~~~-~~L~~~~~~~~-----~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  207 (458)
T 3rp9_A          137 EIAD-SDFKKLFRTPV-----YLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGLARTVD  207 (458)
T ss_dssp             CCCS-EEHHHHHHSSC-----CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBCTT
T ss_pred             eccc-cchhhhcccCC-----CCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccccchhcc
Confidence            9985 79999987543     589999999999999999999954   59999999999999999999999999998753


Q ss_pred             C---------------------------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh
Q 006559          487 T---------------------------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT  531 (640)
Q Consensus       487 ~---------------------------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t  531 (640)
                      .                                 ...+|..|+|||++.      ....++.++|||||||++|||+|
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~------~~~~~~~~~DiwSlG~il~ellt  279 (458)
T 3rp9_A          208 YPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELIL------LQENYTEAIDVWSIGCIFAELLN  279 (458)
T ss_dssp             SCTTCCCCCC---------------------------CCCTTCCHHHHT------TCCCCCTHHHHHHHHHHHHHHHT
T ss_pred             CccccccccccCccccccccccccccccccccccCCcccccccChHHhh------CCCCCCcHhHHHHHHHHHHHHHH
Confidence            1                                 224588899999742      33457889999999999999999

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=1.4e-37  Score=316.48  Aligned_cols=238  Identities=18%  Similarity=0.246  Sum_probs=187.1

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|... ++..||+|++....    ..+.+.+|++++++++||||+++++++...+..++||||+++|
T Consensus        11 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~   90 (284)
T 3kk8_A           11 KEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGG   90 (284)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             hhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEEecCCCC
Confidence            567999999999999864 58899999987542    2355778999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC---eEEccCCcccccCCC-
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN---ACISDIGVHQLFHTP-  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~---~kl~DfGl~~~~~~~-  488 (640)
                      +|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.   +||+|||++...... 
T Consensus        91 ~l~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~  162 (284)
T 3kk8_A           91 ELFEDIVARE-----FYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSE  162 (284)
T ss_dssp             BHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSC
T ss_pred             CHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCc
Confidence            9998887543     588999999999999999999954   5999999999999986655   999999998766432 


Q ss_pred             ----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          489 ----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       489 ----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                          ..++..|+|||++       ....++.++|||||||++|||++|+.||......  ...........  ....+  
T Consensus       163 ~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~--~~~~~~~~~~~--~~~~~--  229 (284)
T 3kk8_A          163 AWHGFAGTPGYLSPEVL-------KKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH--RLYAQIKAGAY--DYPSP--  229 (284)
T ss_dssp             BCCCSCSCGGGCCHHHH-------TTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHTCC--CCCTT--
T ss_pred             cccCCCCCcCCcCchhh-------cCCCCCcccchHHHHHHHHHHHHCCCCCCCCchh--HHHHHHHhccc--cCCch--
Confidence                3568899999975       3345678999999999999999999999754322  11111111100  00000  


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                          .......++.+++..||+.||++|||+.|+++
T Consensus       230 ----~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  261 (284)
T 3kk8_A          230 ----EWDTVTPEAKSLIDSMLTVNPKKRITADQALK  261 (284)
T ss_dssp             ----TTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             ----hhcccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence                00112234667788899999999999999976

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=7.8e-38  Score=320.04  Aligned_cols=241  Identities=22%  Similarity=0.303  Sum_probs=186.6

Q ss_pred             ccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          339 ELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      .+||+|+||.||+|+. .++..||||.+...  ...+.+.+|+.+++.++||||+++++++...+..++||||+++|+|.
T Consensus        28 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~  107 (295)
T 2clq_A           28 VVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLS  107 (295)
T ss_dssp             CEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCSEEEHH
T ss_pred             EEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCCCCCHH
Confidence            4799999999999995 56788999998765  33567889999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC-CCCeEEccCCcccccCC------C
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ-LGNACISDIGVHQLFHT------P  488 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~-~~~~kl~DfGl~~~~~~------~  488 (640)
                      +++.....  ...+++..+..++.|++.||+|||+   .+|+||||||+||+++. ++.+||+|||+++....      .
T Consensus       108 ~~l~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~  182 (295)
T 2clq_A          108 ALLRSKWG--PLKDNEQTIGFYTKQILEGLKYLHD---NQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTET  182 (295)
T ss_dssp             HHHHHTTC--CCTTCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-----CC
T ss_pred             HHHHhhcc--CCCccHHHHHHHHHHHHHHHHHHHh---CCEEccCCChhhEEEECCCCCEEEeecccccccCCCCCcccc
Confidence            99976532  2356788899999999999999995   45999999999999987 89999999999876542      2


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..++..|+|||++...     ...++.++|||||||++|||+||+.||...........+.....      ..+.  .+.
T Consensus       183 ~~~~~~y~aPE~~~~~-----~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~------~~~~--~~~  249 (295)
T 2clq_A          183 FTGTLQYMAPEIIDKG-----PRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFK------VHPE--IPE  249 (295)
T ss_dssp             CCCCGGGCCHHHHHHG-----GGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHC------CCCC--CCT
T ss_pred             cCCCccccChhhhcCC-----CCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhcccc------cccc--ccc
Confidence            3467899999975321     12367899999999999999999999964322111111110000      0001  111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..   ..++.+++.+||+.||++||++.++++
T Consensus       250 ~~---~~~~~~li~~~l~~dp~~Rps~~~ll~  278 (295)
T 2clq_A          250 SM---SAEAKAFILKCFEPDPDKRACANDLLV  278 (295)
T ss_dssp             TS---CHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred             cC---CHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            11   234667788899999999999999864

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.3e-38  Score=331.03  Aligned_cols=252  Identities=26%  Similarity=0.416  Sum_probs=192.8

Q ss_pred             hhccccccCcceEEEEEe-----CCCcEEEEEEecccc--chHHHHHHHHHHhccCCCcccceeEEEEcCC--eEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVL-----DGGDVVVVKRIRERK--KKREVDEWLRVIGGLRHSNIVSIRAYCNGKD--ELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-----~~~~~vavK~l~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~--~~~lV~E  407 (640)
                      ..+.||+|+||.||++++     .+++.||||++....  ..+.+.+|++++++++||||+++++++...+  ..++|||
T Consensus        45 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e  124 (326)
T 2w1i_A           45 FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIME  124 (326)
T ss_dssp             EEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCEEEEC
T ss_pred             eeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceEEEEE
Confidence            357899999999999984     357889999997653  3457889999999999999999999987654  7899999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      |+++|+|.+++....    ..+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||+++....
T Consensus       125 ~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~  197 (326)
T 2w1i_A          125 YLPYGSLRDYLQKHK----ERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQ  197 (326)
T ss_dssp             CCTTCBHHHHHHHST----TSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECCCTTCEECCS
T ss_pred             CCCCCCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHHh---CCEeccCCCcceEEEcCCCcEEEecCcchhhccc
Confidence            999999999998653    258899999999999999999995   4599999999999999999999999999987643


Q ss_pred             C---------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccc--
Q 006559          488 P---------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESA--  556 (640)
Q Consensus       488 ~---------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~--  556 (640)
                      .         ...+..|+|||++.       ...++.++|||||||++|||+||+.|+....   ..+.+........  
T Consensus       198 ~~~~~~~~~~~~~~~~y~aPE~~~-------~~~~~~~~Di~slG~il~el~tg~~~~~~~~---~~~~~~~~~~~~~~~  267 (326)
T 2w1i_A          198 DKEYYKVKEPGESPIFWYAPESLT-------ESKFSVASDVWSFGVVLYELFTYIEKSKSPP---AEFMRMIGNDKQGQM  267 (326)
T ss_dssp             SCSEEECSSCCSCCGGGCCHHHHH-------HCEEEHHHHHHHHHHHHHHHHHTTCGGGSHH---HHHHHHHCTTCCTHH
T ss_pred             cccccccccCCCCceeEECchhhc-------CCCCCchhhHHHHHHHHHHHHhcCCCCCCCH---HHHHHhhccccchhh
Confidence            2         22355799999653       3456789999999999999999999875321   1111111111000  


Q ss_pred             -----ccccch--hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          557 -----WEVFDF--ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       557 -----~~~~d~--~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                           .+.+..  ......   ....++.+++..||+.||++|||+.++++.|++++..
T Consensus       268 ~~~~~~~~~~~~~~~~~~~---~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~  323 (326)
T 2w1i_A          268 IVFHLIELLKNNGRLPRPD---GCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQ  323 (326)
T ss_dssp             HHHHHHHHHHTTCCCCCCT---TCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhcCCCCCCCC---cccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence                 000000  000111   2234577788899999999999999999999998753

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=4.9e-38  Score=326.53  Aligned_cols=257  Identities=17%  Similarity=0.317  Sum_probs=187.9

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccccch---HHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERKKK---REVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~~---~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||.||+|+.. +++.||||++......   ..+.+|++++++++||||+++++++...+..++||||++ |+
T Consensus         7 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~   85 (324)
T 3mtl_A            7 LDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD-KD   85 (324)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEECCS-EE
T ss_pred             EEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecccc-cC
Confidence            467999999999999965 6889999998754221   234568999999999999999999999999999999997 59


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------  487 (640)
                      |.+++....    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....      
T Consensus        86 l~~~~~~~~----~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~  158 (324)
T 3mtl_A           86 LKQYLDDCG----NIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYD  158 (324)
T ss_dssp             HHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEEECC--------
T ss_pred             HHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCcccccccCCccccc
Confidence            999887643    2588999999999999999999954   599999999999999999999999999876542      


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHH-HHhhcc-ccccc-ccchh
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWV-QMMGQD-ESAWE-VFDFE  563 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~-~~~~~~-~~~~~-~~d~~  563 (640)
                      ...+|..|+|||++.+      ...++.++|||||||++|||+||+.||...... ....+ +..... ...+. .....
T Consensus       159 ~~~~t~~y~aPE~~~~------~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  232 (324)
T 3mtl_A          159 NEVVTLWYRPPDILLG------STDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNE  232 (324)
T ss_dssp             ----CGGGCCHHHHTT------CCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCH
T ss_pred             cccCcccccChhhhcC------CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcch
Confidence            2345889999997532      245678999999999999999999999754322 11111 111111 00010 00000


Q ss_pred             ---------hccC---hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhhcc
Q 006559          564 ---------LIMD---KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDIRTK  608 (640)
Q Consensus       564 ---------~~~~---~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i~~~  608 (640)
                               ....   ........++.+++.+||+.||++|||+.|+++  .+.++...
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~  291 (324)
T 3mtl_A          233 EFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLGER  291 (324)
T ss_dssp             HHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCST
T ss_pred             hhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcChhhhhcccc
Confidence                     0000   000111235677888999999999999999976  55555443

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=2.1e-37  Score=322.19  Aligned_cols=251  Identities=23%  Similarity=0.354  Sum_probs=193.9

Q ss_pred             hhccccccCcceEEEEEeC-CCcE--EEEEEeccc---cchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDV--VVVKRIRER---KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~--vavK~l~~~---~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ..+.||+|+||.||+|+.. ++..  ||||.++..   ...+.+.+|+++++++ +||||+++++++...+..++||||+
T Consensus        29 ~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~  108 (327)
T 1fvr_A           29 FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYA  108 (327)
T ss_dssp             EEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             ceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEEEecC
Confidence            3578999999999999864 4554  489988753   2345688899999999 8999999999999999999999999


Q ss_pred             CCCCHHHhhccCCC-----------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEcc
Q 006559          410 PHGSLHSLLHGSRG-----------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISD  478 (640)
Q Consensus       410 ~~gsL~~~l~~~~~-----------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~D  478 (640)
                      ++|+|.+++.....           .....+++..++.++.|++.||+|||+   .+|+||||||+|||++.++.+||+|
T Consensus       109 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~~~~~kL~D  185 (327)
T 1fvr_A          109 PHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIAD  185 (327)
T ss_dssp             TTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECGGGCEEECC
T ss_pred             CCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCccceEEEcCCCeEEEcc
Confidence            99999999976430           112358999999999999999999995   4599999999999999999999999


Q ss_pred             CCcccccCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhc
Q 006559          479 IGVHQLFHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQ  552 (640)
Q Consensus       479 fGl~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~  552 (640)
                      ||+++....     ....+..|+|||++       ....++.++|||||||++|||+| |+.||.....  .........
T Consensus       186 fg~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~--~~~~~~~~~  256 (327)
T 1fvr_A          186 FGLSRGQEVYVKKTMGRLPVRWMAIESL-------NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC--AELYEKLPQ  256 (327)
T ss_dssp             TTCEESSCEECCC----CCTTTCCHHHH-------HHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCH--HHHHHHGGG
T ss_pred             cCcCccccccccccCCCCCccccChhhh-------ccccCCchhcchHHHHHHHHHHcCCCCCCCCCcH--HHHHHHhhc
Confidence            999875431     22346789999965       33456789999999999999998 9999975432  222222211


Q ss_pred             ccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 006559          553 DESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGS  610 (640)
Q Consensus       553 ~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~  610 (640)
                      ...        ......   ...++.+++.+||+.||++|||+.++++.|+++..+..
T Consensus       257 ~~~--------~~~~~~---~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~  303 (327)
T 1fvr_A          257 GYR--------LEKPLN---CDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK  303 (327)
T ss_dssp             TCC--------CCCCTT---BCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSS
T ss_pred             CCC--------CCCCCC---CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhhc
Confidence            100        001111   12346678888999999999999999999999876543

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=8.1e-38  Score=325.31  Aligned_cols=240  Identities=18%  Similarity=0.282  Sum_probs=186.9

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc----cchHHHHHHHHHHhccC-CCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER----KKKREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+.. +++.||||++...    .....+.+|+.++.+++ ||||+++++++...+..++||||+++
T Consensus        34 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv~e~~~~  113 (327)
T 3lm5_A           34 SKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAG  113 (327)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred             cceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEEEEecCC
Confidence            378999999999999965 5889999998754    23567888999999885 69999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC---CCCeEEccCCcccccCCC
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ---LGNACISDIGVHQLFHTP  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~---~~~~kl~DfGl~~~~~~~  488 (640)
                      |+|.+++....   ...+++..+..++.|++.||+|||+.   +|+||||||+|||++.   ++.+||+|||+++.....
T Consensus       114 ~~L~~~~~~~~---~~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~  187 (327)
T 3lm5_A          114 GEIFSLCLPEL---AEMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHA  187 (327)
T ss_dssp             EEGGGGGSSCC----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC---
T ss_pred             CcHHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecCCCCCcEEEeeCccccccCCc
Confidence            99999986542   22589999999999999999999954   5999999999999997   789999999999876432


Q ss_pred             -----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchh
Q 006559          489 -----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       489 -----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                           ..++..|+|||++       ....++.++|||||||++|||+||+.||........  ........     .+..
T Consensus       188 ~~~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~--~~~i~~~~-----~~~~  253 (327)
T 3lm5_A          188 CELREIMGTPEYLAPEIL-------NYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQET--YLNISQVN-----VDYS  253 (327)
T ss_dssp             ------CCCGGGCCHHHH-------TTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHHHTC-----CCCC
T ss_pred             cccccccCCcCccCCeee-------cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHH--HHHHHhcc-----cccC
Confidence                 3568899999965       344677899999999999999999999975432211  11111100     0000


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .   .........+.+++..||+.||++|||+.++++
T Consensus       254 ~---~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~  287 (327)
T 3lm5_A          254 E---ETFSSVSQLATDFIQSLLVKNPEKRPTAEICLS  287 (327)
T ss_dssp             T---TTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             c---hhhcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence            0   001112234667788899999999999999864

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=1.1e-37  Score=328.85  Aligned_cols=255  Identities=20%  Similarity=0.275  Sum_probs=191.6

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||.||+|+.. ++..||+|.+...   ...+.+.+|++++++++||||+++++++...+..++||||+++|+
T Consensus        38 ~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~  117 (360)
T 3eqc_A           38 ISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGS  117 (360)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECCCTTCB
T ss_pred             eeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEECCCCCC
Confidence            467999999999999965 6889999998754   234567889999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC----CCc
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH----TPF  489 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~----~~~  489 (640)
                      |.+++....     .+++..+..++.|++.||+|||+.  .+|+||||||+|||++.++.+||+|||+++...    ...
T Consensus       118 L~~~l~~~~-----~~~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  190 (360)
T 3eqc_A          118 LDQVLKKAG-----RIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSF  190 (360)
T ss_dssp             HHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHC----
T ss_pred             HHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHh--CCEEcCCccHHHEEECCCCCEEEEECCCCcccccccccCC
Confidence            999997643     488999999999999999999952  259999999999999999999999999986542    334


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccc---------------
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDE---------------  554 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~---------------  554 (640)
                      .++..|+|||++       ....++.++|||||||++|||+||+.||..................               
T Consensus       191 ~gt~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (360)
T 3eqc_A          191 VGTRSYMSPERL-------QGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRP  263 (360)
T ss_dssp             CCCCTTCCHHHH-------TTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC--------------------
T ss_pred             CCCCCeECHHHH-------cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCc
Confidence            568899999975       3345778999999999999999999999754432222111000000               


Q ss_pred             ------------ccccccchhhc---cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhh
Q 006559          555 ------------SAWEVFDFELI---MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDIR  606 (640)
Q Consensus       555 ------------~~~~~~d~~~~---~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i~  606 (640)
                                  ...+..+....   ..........++.+++..||+.||++|||+.|+++  .+++..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~  332 (360)
T 3eqc_A          264 LNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSD  332 (360)
T ss_dssp             ----------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHHHHHHH
T ss_pred             ccccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhChHhhcch
Confidence                        00000000000   00000011235778888999999999999999975  444443

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=1.7e-37  Score=338.06  Aligned_cols=250  Identities=18%  Similarity=0.223  Sum_probs=192.8

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccccchHHHHHHHHHHhccCCC-cccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVIGGLRHS-NIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~-niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ..++||+|+||.||+|+. .+++.||||++.......++..|+++++.++|+ +|..+..++...+..++||||+ +++|
T Consensus        11 i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~-g~sL   89 (483)
T 3sv0_A           11 LGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL-GPSL   89 (483)
T ss_dssp             CCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECC-CCBH
T ss_pred             EEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECC-CCCH
Confidence            356899999999999995 568899999987765666688899999999885 5555666667788999999999 9999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE---CCCCCeEEccCCcccccCC----
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV---DQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl---~~~~~~kl~DfGl~~~~~~----  487 (640)
                      .+++.....    .+++..++.|+.||+.||+|||+.   +||||||||+|||+   +.++.+||+|||+++.+..    
T Consensus        90 ~~ll~~~~~----~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~  162 (483)
T 3sv0_A           90 EDLFNFCSR----KLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTH  162 (483)
T ss_dssp             HHHHHHTTT----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTC
T ss_pred             HHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCccc
Confidence            999975432    589999999999999999999954   59999999999999   6889999999999986542    


Q ss_pred             ---------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHhhcccccc
Q 006559          488 ---------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQDESAW  557 (640)
Q Consensus       488 ---------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~~  557 (640)
                               ...+|..|+|||++       ....++.++|||||||++|||++|+.||...... ............ ..
T Consensus       163 ~~~~~~~~~~~~gt~~Y~aPE~~-------~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~-~~  234 (483)
T 3sv0_A          163 QHIPYRENKNLTGTARYASVNTH-------LGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKK-VA  234 (483)
T ss_dssp             CBCCCCCCCCCCSCTTTCCHHHH-------TTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHH-HH
T ss_pred             cccccccccccCCCccccCHHHh-------cCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhcc-cc
Confidence                     23468899999965       3445778999999999999999999999753221 111111111100 00


Q ss_pred             cccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       558 ~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ...      .........++.+++..||+.+|++||++.+|+++|+++...
T Consensus       235 ~~~------~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~  279 (483)
T 3sv0_A          235 TSI------EALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIR  279 (483)
T ss_dssp             SCH------HHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             ccH------HHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHH
Confidence            000      000012234677888889999999999999999999998543

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-37  Score=318.54  Aligned_cols=249  Identities=21%  Similarity=0.303  Sum_probs=183.5

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc-------chHHHHHHHHHHhcc---CCCcccceeEEEEcCC-----e
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-------KKREVDEWLRVIGGL---RHSNIVSIRAYCNGKD-----E  401 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-------~~~~~~~e~~~l~~l---~H~niv~l~~~~~~~~-----~  401 (640)
                      .+.||+|+||+||+|+. .+++.||||++....       ....+.+|+++++++   +||||+++++++....     .
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~~~~~~   93 (308)
T 3g33_A           14 VAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIK   93 (308)
T ss_dssp             EEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECCSSSEEE
T ss_pred             EEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccCCCCcee
Confidence            56799999999999995 568899999986431       134566677666655   5999999999998654     5


Q ss_pred             EEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCc
Q 006559          402 LFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV  481 (640)
Q Consensus       402 ~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl  481 (640)
                      .++||||+. |+|.+++.....   ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+
T Consensus        94 ~~lv~e~~~-~~L~~~~~~~~~---~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~  166 (308)
T 3g33_A           94 VTLVFEHVD-QDLRTYLDKAPP---PGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGTVKLADFGL  166 (308)
T ss_dssp             EEEEEECCC-CBHHHHHHTCCT---TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSCEEECSCSC
T ss_pred             EEEEehhhh-cCHHHHHhhccC---CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEEeeCcc
Confidence            899999997 699999986542   2489999999999999999999954   499999999999999999999999999


Q ss_pred             ccccCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hH-HHHHHhhccc
Q 006559          482 HQLFHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IV-KWVQMMGQDE  554 (640)
Q Consensus       482 ~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~-~~~~~~~~~~  554 (640)
                      ++....     ...+|..|+|||++       ....++.++|||||||++|||+||+.||...... .. ...+......
T Consensus       167 a~~~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~  239 (308)
T 3g33_A          167 ARIYSYQMALTPVVVTLWYRAPEVL-------LQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPP  239 (308)
T ss_dssp             TTTSTTCCCSGGGGCCCSSCCHHHH-------HTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCC
T ss_pred             ccccCCCcccCCccccccccCchHH-------cCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCC
Confidence            986543     23458899999975       3345778999999999999999999999754322 11 1111111110


Q ss_pred             -cccc----ccchhh----ccC--hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          555 -SAWE----VFDFEL----IMD--KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       555 -~~~~----~~d~~~----~~~--~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       ..+.    ..+...    ...  ....+....+.+++.+||+.||++|||+.|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  296 (308)
T 3g33_A          240 EDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ  296 (308)
T ss_dssp             TTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             hhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence             0000    000000    000  000112245677888899999999999999875

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=324.02  Aligned_cols=251  Identities=18%  Similarity=0.281  Sum_probs=179.2

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhccC-CCcccceeEEEE--------cCCeEEE
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGGLR-HSNIVSIRAYCN--------GKDELFL  404 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~-H~niv~l~~~~~--------~~~~~~l  404 (640)
                      ..++||+|+||.||+|+. .+++.||||++...  ...+.+.+|+.++.++. ||||+++++++.        .....++
T Consensus        32 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~~l  111 (337)
T 3ll6_A           32 VRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLL  111 (337)
T ss_dssp             EEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSEEEEE
T ss_pred             EEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCceEEE
Confidence            467899999999999996 46889999988654  33456788999999996 999999999994        3446899


Q ss_pred             EEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          405 VYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      ||||+. |+|.+++.....  ..++++..+..++.|++.||+|||+.+ ++|+||||||+|||++.++.+||+|||+++.
T Consensus       112 v~e~~~-g~L~~~l~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~~-~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~  187 (337)
T 3ll6_A          112 LTELCK-GQLVEFLKKMES--RGPLSCDTVLKIFYQTCRAVQHMHRQK-PPIIHRDLKVENLLLSNQGTIKLCDFGSATT  187 (337)
T ss_dssp             EEECCS-EEHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHHHHHHTSS-SCCBCCCCCGGGCEECTTSCEEBCCCTTCBC
T ss_pred             EEEecC-CCHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhCC-CCEEEccCCcccEEECCCCCEEEecCcccee
Confidence            999996 799998864221  125899999999999999999999532 3399999999999999999999999999987


Q ss_pred             cCC------------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHH
Q 006559          485 FHT------------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKW  546 (640)
Q Consensus       485 ~~~------------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~  546 (640)
                      ...                  ...++..|+|||++..    .....++.++|||||||++|||+||+.||......  ..
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~----~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~--~~  261 (337)
T 3ll6_A          188 ISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDL----YSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL--RI  261 (337)
T ss_dssp             CSSCC-------------------------------C----CTTSCSSHHHHHHHHHHHHHHHHHSSCCC----------
T ss_pred             ccccCcccccccccccchhhccccCCCCcCChhhhhc----cccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH--Hh
Confidence            543                  1235778999997521    13456788999999999999999999999743211  11


Q ss_pred             HHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCCC
Q 006559          547 VQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSI  611 (640)
Q Consensus       547 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~~  611 (640)
                      ......       .....       .....+.+++..||+.||++||++.|+++.|+++......
T Consensus       262 ~~~~~~-------~~~~~-------~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~~  312 (337)
T 3ll6_A          262 VNGKYS-------IPPHD-------TQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARNV  312 (337)
T ss_dssp             ----CC-------CCTTC-------CSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHTTC
T ss_pred             hcCccc-------CCccc-------ccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccCC
Confidence            100000       00000       0112356678889999999999999999999999866444

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=9.1e-38  Score=325.46  Aligned_cols=249  Identities=22%  Similarity=0.329  Sum_probs=186.2

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|+.. +++.||||++....    ..+.+.+|++++++++||||+++++++...+..++||||++++
T Consensus        30 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~  109 (331)
T 4aaa_A           30 LGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHT  109 (331)
T ss_dssp             EEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEE
T ss_pred             eeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEecCCcc
Confidence            568999999999999965 48899999986542    2345678999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      +|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....     
T Consensus       110 ~l~~~~~~~~-----~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  181 (331)
T 4aaa_A          110 ILDDLELFPN-----GLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVY  181 (331)
T ss_dssp             HHHHHHHSTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCTTC----------
T ss_pred             hHHHHHhhcc-----CCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCCCceeecCCcccc
Confidence            9998876443     488999999999999999999954   599999999999999999999999999976532     


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcch-H-HHHHHhhcc-----------
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGI-V-KWVQMMGQD-----------  553 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~-~-~~~~~~~~~-----------  553 (640)
                       ...++..|+|||++..      ...++.++|||||||++|||+||+.||....... . .........           
T Consensus       182 ~~~~~t~~y~aPE~~~~------~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (331)
T 4aaa_A          182 DDEVATRWYRAPELLVG------DVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKN  255 (331)
T ss_dssp             --CCCCCTTCCHHHHTT------CTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHC
T ss_pred             CCCcCCccccCcccccC------CCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhc
Confidence             2356888999997532      2356789999999999999999999997543211 1 111111100           


Q ss_pred             cccccccchhhccC----hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          554 ESAWEVFDFELIMD----KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       554 ~~~~~~~d~~~~~~----~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ........+.....    .........+.+++.+||+.||++|||+.|+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  306 (331)
T 4aaa_A          256 PVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH  306 (331)
T ss_dssp             GGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             cccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence            00000000000000    001122346778888999999999999999874

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5.8e-38  Score=330.18  Aligned_cols=239  Identities=20%  Similarity=0.274  Sum_probs=185.9

Q ss_pred             hhccccccCcceEEEEEe----CCCcEEEEEEeccc------cchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEE
Q 006559          337 SAELLGKGCVGATYKVVL----DGGDVVVVKRIRER------KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLV  405 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~----~~~~~vavK~l~~~------~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV  405 (640)
                      ..+.||+|+||.||+++.    .+++.||||+++..      ...+.+.+|+++++++ +||||+++++++...+..++|
T Consensus        58 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv  137 (355)
T 1vzo_A           58 LLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLI  137 (355)
T ss_dssp             EEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEE
T ss_pred             EEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCceEEEE
Confidence            357899999999999997    46889999998753      2234566788889988 699999999999999999999


Q ss_pred             EeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccccc
Q 006559          406 YDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF  485 (640)
Q Consensus       406 ~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~  485 (640)
                      |||+++|+|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+
T Consensus       138 ~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~  209 (355)
T 1vzo_A          138 LDYINGGELFTHLSQRE-----RFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKEF  209 (355)
T ss_dssp             ECCCCSCBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEEEEC
T ss_pred             eecCCCCCHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcEEEeeCCCCeec
Confidence            99999999999997543     588999999999999999999954   5999999999999999999999999998765


Q ss_pred             CC-------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc--chHHHHHHhhccccc
Q 006559          486 HT-------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL--GIVKWVQMMGQDESA  556 (640)
Q Consensus       486 ~~-------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~--~~~~~~~~~~~~~~~  556 (640)
                      ..       ...+|..|+|||++.+.     ...++.++|||||||++|||+||+.||.....  ....+.+......  
T Consensus       210 ~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~--  282 (355)
T 1vzo_A          210 VADETERAYDFCGTIEYMAPDIVRGG-----DSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSE--  282 (355)
T ss_dssp             CGGGGGGGCGGGSCCTTCCHHHHTTC-----C---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCC--
T ss_pred             ccCCCCcccCcccCcCccChhhhcCC-----CCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccC--
Confidence            32       23568899999976321     23467899999999999999999999974321  2222222211110  


Q ss_pred             ccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 006559          557 WEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRP-----NMSIVHR  600 (640)
Q Consensus       557 ~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RP-----s~~~v~~  600 (640)
                             ...+...   ...+.+++.+||+.||++||     ++.|+++
T Consensus       283 -------~~~~~~~---~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~  321 (355)
T 1vzo_A          283 -------PPYPQEM---SALAKDLIQRLLMKDPKKRLGCGPRDADEIKE  321 (355)
T ss_dssp             -------CCCCTTS---CHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred             -------CCCCccc---CHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHc
Confidence                   0011111   23456778889999999999     8888765

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=3.3e-37  Score=325.60  Aligned_cols=244  Identities=17%  Similarity=0.273  Sum_probs=189.8

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----------chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEE
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----------KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLV  405 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----------~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV  405 (640)
                      .+.||+|+||.||+|+.. +|+.||||++....          ..+.+.+|+.+++++ +||||+++++++......++|
T Consensus        99 ~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv  178 (365)
T 2y7j_A           99 KDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFLV  178 (365)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBSSEEEEE
T ss_pred             ceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeCCEEEEE
Confidence            368999999999999975 68999999986542          134567889999998 799999999999999999999


Q ss_pred             EeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccccc
Q 006559          406 YDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF  485 (640)
Q Consensus       406 ~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~  485 (640)
                      |||+++|+|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||++...
T Consensus       179 ~e~~~g~~L~~~l~~~~-----~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~  250 (365)
T 2y7j_A          179 FDLMRKGELFDYLTEKV-----ALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDDNMQIRLSDFGFSCHL  250 (365)
T ss_dssp             ECCCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEeCCCCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEEecCccccc
Confidence            99999999999997542     588999999999999999999954   5999999999999999999999999998765


Q ss_pred             CC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccccc
Q 006559          486 HT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVF  560 (640)
Q Consensus       486 ~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  560 (640)
                      ..     ...+|..|+|||++.+.... ....++.++|||||||++|||+||+.||......  ...+.......  ...
T Consensus       251 ~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~--~~~~~i~~~~~--~~~  325 (365)
T 2y7j_A          251 EPGEKLRELCGTPGYLAPEILKCSMDE-THPGYGKEVDLWACGVILFTLLAGSPPFWHRRQI--LMLRMIMEGQY--QFS  325 (365)
T ss_dssp             CTTCCBCCCCSCGGGCCHHHHHHTTCT-TSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHTCC--CCC
T ss_pred             CCCcccccCCCCCCccChhhccccccc-cCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHH--HHHHHHHhCCC--CCC
Confidence            43     23568899999976432111 1235788999999999999999999999753321  11111111100  000


Q ss_pred             chhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          561 DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       561 d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .+      ........+.+++.+||+.||++|||+.++++
T Consensus       326 ~~------~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~  359 (365)
T 2y7j_A          326 SP------EWDDRSSTVKDLISRLLQVDPEARLTAEQALQ  359 (365)
T ss_dssp             HH------HHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             Cc------ccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            00      01112235677888899999999999999875

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.6e-37  Score=319.33  Aligned_cols=239  Identities=19%  Similarity=0.313  Sum_probs=187.1

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ..+.||+|+||.||+|+.. +|..||||.+......+.+.+|++++++++||||+++++++...+..++||||+++|+|.
T Consensus        33 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~  112 (314)
T 3com_A           33 VLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVS  112 (314)
T ss_dssp             EEEECC----CEEEEEEETTTCCEEEEEEEETTSCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEHH
T ss_pred             hheeeccCCCeEEEEEEECCCCCEEEEEecCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeecCCCCCHH
Confidence            3567999999999999975 588999999987766778899999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------Cc
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------PF  489 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------~~  489 (640)
                      +++....    ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++.....      ..
T Consensus       113 ~~~~~~~----~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~  185 (314)
T 3com_A          113 DIIRLRN----KTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTV  185 (314)
T ss_dssp             HHHHHHT----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBSCBCCC
T ss_pred             HHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeecccchhhhhhccccCcc
Confidence            9986322    2588999999999999999999954   599999999999999999999999999876543      23


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChH
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKE  569 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  569 (640)
                      .++..|+|||++       ....++.++|||||||++|||++|+.||.........+  .......      +.......
T Consensus       186 ~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~--~~~~~~~------~~~~~~~~  250 (314)
T 3com_A          186 IGTPFWMAPEVI-------QEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIF--MIPTNPP------PTFRKPEL  250 (314)
T ss_dssp             CSCGGGCCHHHH-------SSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH--HHHHSCC------CCCSSGGG
T ss_pred             CCCCCccChhhc-------CCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHH--HHhcCCC------cccCCccc
Confidence            457889999975       33457789999999999999999999997533211111  1111100      00000111


Q ss_pred             HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          570 MEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       570 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                         ....+.+++..||+.||++|||+.++++
T Consensus       251 ---~~~~l~~li~~~l~~dp~~Rpt~~~ll~  278 (314)
T 3com_A          251 ---WSDNFTDFVKQCLVKSPEQRATATQLLQ  278 (314)
T ss_dssp             ---SCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             ---CCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence               1234667888899999999999999975

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=2.3e-37  Score=321.88  Aligned_cols=249  Identities=23%  Similarity=0.297  Sum_probs=191.1

Q ss_pred             hhccccccCcceEEEEEe------CCCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVL------DGGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~------~~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||.||+|+.      .++..||||.+...   .....+.+|+.++++++||||+++++++...+..|+|||
T Consensus        34 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  113 (327)
T 2yfx_A           34 LIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILME  113 (327)
T ss_dssp             EEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             EEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCcEEEEe
Confidence            357899999999999984      34678999999754   234567889999999999999999999999999999999


Q ss_pred             ccCCCCHHHhhccCCCC--CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC---CCCeEEccCCcc
Q 006559          408 YLPHGSLHSLLHGSRGP--GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ---LGNACISDIGVH  482 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~--~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~---~~~~kl~DfGl~  482 (640)
                      |+++|+|.+++......  ....+++..++.++.|++.||+|||+.   +|+||||||+|||++.   +..+||+|||++
T Consensus       114 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~  190 (327)
T 2yfx_A          114 LMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMA  190 (327)
T ss_dssp             CCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECCCHHH
T ss_pred             cCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcceEEECccccc
Confidence            99999999999865321  123588999999999999999999954   5999999999999994   456999999998


Q ss_pred             cccCC--------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcc
Q 006559          483 QLFHT--------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQD  553 (640)
Q Consensus       483 ~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~  553 (640)
                      +....        ...++..|+|||++       ....++.++|||||||++|||+| |+.||......  .........
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~~~~~  261 (327)
T 2yfx_A          191 RDIYRASYYRKGGCAMLPVKWMPPEAF-------MEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ--EVLEFVTSG  261 (327)
T ss_dssp             HHHHC------CCGGGSCGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHHHHHHTT
T ss_pred             cccccccccccCCCcCCCcceeCHhHh-------cCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHH--HHHHHHhcC
Confidence            75421        12346789999965       33457789999999999999999 99999754321  112111111


Q ss_pred             cccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          554 ESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       554 ~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ...    +    ....   ....+.+++..||+.||++||++.++++.|+.+...
T Consensus       262 ~~~----~----~~~~---~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~  305 (327)
T 2yfx_A          262 GRM----D----PPKN---CPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD  305 (327)
T ss_dssp             CCC----C----CCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             CCC----C----CCCC---CCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcC
Confidence            100    0    0111   123466788889999999999999999999998764

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=4.6e-37  Score=334.33  Aligned_cols=244  Identities=19%  Similarity=0.284  Sum_probs=180.1

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcC------CeEEEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGK------DELFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------~~~~lV~  406 (640)
                      .+.||+|+||.||+|+. .+++.||||++...    ...+.+.+|+++++.++|||||++++++...      ...|+||
T Consensus        67 ~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~  146 (464)
T 3ttj_A           67 LKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVM  146 (464)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEE
T ss_pred             EEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCCeEEEEE
Confidence            56899999999999985 45888999999754    2345677899999999999999999999654      4689999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      |||++ +|.+.+..       .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus       147 E~~~~-~l~~~~~~-------~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~  215 (464)
T 3ttj_A          147 ELMDA-NLCQVIQM-------ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  215 (464)
T ss_dssp             ECCSE-EHHHHHTS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCCC----
T ss_pred             eCCCC-CHHHHHhh-------cCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEEEeeeecC
Confidence            99986 46666643       378899999999999999999954   59999999999999999999999999998764


Q ss_pred             C-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHH---HHhhccc-ccc
Q 006559          487 T-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWV---QMMGQDE-SAW  557 (640)
Q Consensus       487 ~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~---~~~~~~~-~~~  557 (640)
                      .     ...+|..|+|||++.       ...++.++||||+||++|||++|+.||.+... ...+.   +..+... ..+
T Consensus       216 ~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~-~~~~~~i~~~lg~p~~~~~  287 (464)
T 3ttj_A          216 TSFMMTPYVVTRYYRAPEVIL-------GMGYKENVDIWSVGCIMGEMVRHKILFPGRDY-IDQWNKVIEQLGTPCPEFM  287 (464)
T ss_dssp             -CCCC----CCCTTCCHHHHT-------TCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCSCCHHHH
T ss_pred             CCcccCCCcccccccCHHHHc-------CCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHhcCCCCHHHH
Confidence            3     345688999999753       34577899999999999999999999975432 11111   1111100 000


Q ss_pred             c-----------------------ccchh-hccC-hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          558 E-----------------------VFDFE-LIMD-KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       558 ~-----------------------~~d~~-~~~~-~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .                       .+... .... ........++.+++.+||..||++|||+.|+++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~  355 (464)
T 3ttj_A          288 KKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ  355 (464)
T ss_dssp             TTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             HHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            0                       00000 0000 111122456788899999999999999999874

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=8.9e-38  Score=325.27  Aligned_cols=249  Identities=19%  Similarity=0.296  Sum_probs=181.9

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccccc----hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERKK----KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~----~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ..+.||+|+||.||+|+. .+++.||||+++....    .+.+.+|++++++++||||+++++++...+..++||||++ 
T Consensus        38 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-  116 (329)
T 3gbz_A           38 RITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIFEYAE-  116 (329)
T ss_dssp             EEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEEEECCS-
T ss_pred             EEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEEEecCC-
Confidence            357899999999999985 4688999999975422    3456789999999999999999999999999999999998 


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE-----CCCCCeEEccCCcccccC
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV-----DQLGNACISDIGVHQLFH  486 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl-----~~~~~~kl~DfGl~~~~~  486 (640)
                      |+|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||+     +.++.+||+|||+++...
T Consensus       117 ~~L~~~~~~~~-----~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~  188 (329)
T 3gbz_A          117 NDLKKYMDKNP-----DVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFG  188 (329)
T ss_dssp             EEHHHHHHHCT-----TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC
T ss_pred             CCHHHHHhhcC-----CCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccceEEECcCCCccccC
Confidence            59999997653     488999999999999999999954   59999999999999     455569999999997654


Q ss_pred             C------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcch--HHHHHHhhccc-ccc
Q 006559          487 T------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGI--VKWVQMMGQDE-SAW  557 (640)
Q Consensus       487 ~------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~--~~~~~~~~~~~-~~~  557 (640)
                      .      ...+|..|+|||++..      ...++.++|||||||++|||++|+.||.......  ....+...... ..+
T Consensus       189 ~~~~~~~~~~~t~~y~aPE~~~~------~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  262 (329)
T 3gbz_A          189 IPIRQFTHEIITLWYRPPEILLG------SRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTW  262 (329)
T ss_dssp             -----------CCTTCCHHHHTT------CCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTS
T ss_pred             CcccccCCCcCCccccCHHHhcC------CCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhh
Confidence            2      2345889999997532      2346789999999999999999999997543211  11111111110 000


Q ss_pred             cccc----h--hh--ccChHHHH-----HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          558 EVFD----F--EL--IMDKEMEE-----EMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       558 ~~~d----~--~~--~~~~~~~~-----~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ....    .  ..  ........     ...++.+++.+||+.||++|||+.|+++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  318 (329)
T 3gbz_A          263 PGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE  318 (329)
T ss_dssp             TTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             hhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence            0000    0  00  00000000     1245678888999999999999999875

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=4.6e-38  Score=319.81  Aligned_cols=240  Identities=23%  Similarity=0.358  Sum_probs=190.2

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEc----------------C
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNG----------------K  399 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~----------------~  399 (640)
                      ..+.||+|+||.||+|+.. +++.||+|.+....  ..+.+|++++++++||||+++++++..                .
T Consensus        15 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (284)
T 2a19_B           15 EIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN--EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKT   92 (284)
T ss_dssp             EEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS--GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------CCEE
T ss_pred             eeeeeccCCceEEEEEEEcCCCeEEEEEEecccc--HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccccccccCc
Confidence            3578999999999999975 78999999987543  356788999999999999999998854                3


Q ss_pred             CeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccC
Q 006559          400 DELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDI  479 (640)
Q Consensus       400 ~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~Df  479 (640)
                      ...++||||+++|+|.+++....   ...+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+||
T Consensus        93 ~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Df  166 (284)
T 2a19_B           93 KCLFIQMEFCDKGTLEQWIEKRR---GEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVDTKQVKIGDF  166 (284)
T ss_dssp             EEEEEEECCCCSCBHHHHHHHGG---GSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCC
T ss_pred             ceEEEEEeccCCCCHHHHHhhcc---CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcCCCCEEECcc
Confidence            45899999999999999997542   12588999999999999999999954   5999999999999999999999999


Q ss_pred             CcccccCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccc
Q 006559          480 GVHQLFHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDE  554 (640)
Q Consensus       480 Gl~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~  554 (640)
                      |+++....     ...++..|+|||++       ....++.++|||||||++|||+||..|+...    ..+....... 
T Consensus       167 g~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~~~~~~~~~----~~~~~~~~~~-  234 (284)
T 2a19_B          167 GLVTSLKNDGKRTRSKGTLRYMSPEQI-------SSQDYGKEVDLYALGLILAELLHVCDTAFET----SKFFTDLRDG-  234 (284)
T ss_dssp             TTCEESSCCSCCCCCCSCCTTSCHHHH-------HCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH----HHHHHHHHTT-
T ss_pred             hhheeccccccccccCCcccccChhhh-------ccCCCcchhhhHHHHHHHHHHHhcCCcchhH----HHHHHHhhcc-
Confidence            99877643     23468899999965       3445778999999999999999999887421    1111111110 


Q ss_pred             ccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 006559          555 SAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG  609 (640)
Q Consensus       555 ~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~  609 (640)
                      .          .....+   .++.+++..||+.||++||++.|+++.|+.+....
T Consensus       235 ~----------~~~~~~---~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~  276 (284)
T 2a19_B          235 I----------ISDIFD---KKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSP  276 (284)
T ss_dssp             C----------CCTTSC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC--
T ss_pred             c----------ccccCC---HHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCC
Confidence            0          001111   23566778899999999999999999999988653

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=6.1e-37  Score=315.18  Aligned_cols=239  Identities=17%  Similarity=0.269  Sum_probs=187.6

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc--chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK--KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      ..+.||+|+||.||+++.. +|+.||+|.++...  ..+.+.+|+.++++++||||+++++++...+..++||||+++|+
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   92 (304)
T 2jam_A           13 FMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGE   92 (304)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred             eeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcCCCcc
Confidence            3578999999999999964 68899999997652  34568899999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE---CCCCCeEEccCCcccccCCC--
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV---DQLGNACISDIGVHQLFHTP--  488 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl---~~~~~~kl~DfGl~~~~~~~--  488 (640)
                      |.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+||++   +.++.+||+|||+++.....  
T Consensus        93 L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~  164 (304)
T 2jam_A           93 LFDRILERG-----VYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIM  164 (304)
T ss_dssp             HHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBTT
T ss_pred             HHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCcc
Confidence            999987543     588999999999999999999954   59999999999999   78899999999998765432  


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                        ..++..|+|||++       ....++.++|||||||++|||+||+.||......  ............   ....  .
T Consensus       165 ~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~i~~~~~~---~~~~--~  230 (304)
T 2jam_A          165 STACGTPGYVAPEVL-------AQKPYSKAVDCWSIGVITYILLCGYPPFYEETES--KLFEKIKEGYYE---FESP--F  230 (304)
T ss_dssp             HHHHSCCCBCCTTTB-------SSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHCCCC---CCTT--T
T ss_pred             ccccCCCCccChHHh-------ccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHcCCCC---CCcc--c
Confidence              2358899999965       3345778999999999999999999999753321  111111111000   0000  0


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..   .....+.+++..||+.||++||++.++++
T Consensus       231 ~~---~~~~~~~~li~~~l~~dp~~Rps~~~~l~  261 (304)
T 2jam_A          231 WD---DISESAKDFICHLLEKDPNERYTCEKALS  261 (304)
T ss_dssp             TT---TSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             cc---cCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            01   12234667888899999999999999875

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=8.7e-37  Score=320.69  Aligned_cols=249  Identities=19%  Similarity=0.331  Sum_probs=185.4

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEc--------CCeEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNG--------KDELFL  404 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~--------~~~~~l  404 (640)
                      .+.||+|+||.||+|+. .+|+.||||++....    ....+.+|++++++++||||+++++++..        .+..++
T Consensus        22 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~l  101 (351)
T 3mi9_A           22 LAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYL  101 (351)
T ss_dssp             EEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------CEEEE
T ss_pred             EEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCCceEEE
Confidence            56899999999999997 568899999986542    24567889999999999999999999976        346899


Q ss_pred             EEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          405 VYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      ||||+++ +|.+.+....    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.
T Consensus       102 v~e~~~~-~l~~~l~~~~----~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~  173 (351)
T 3mi9_A          102 VFDFCEH-DLAGLLSNVL----VKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFGLARA  173 (351)
T ss_dssp             EEECCSE-EHHHHHHCTT----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEeccCC-CHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEccchhccc
Confidence            9999985 7877776543    2588999999999999999999954   599999999999999999999999999876


Q ss_pred             cCC----------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHh-hc
Q 006559          485 FHT----------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMM-GQ  552 (640)
Q Consensus       485 ~~~----------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~-~~  552 (640)
                      +..          ...+|..|+|||++.+      ...++.++|||||||++|||+||+.||...... ....+... ..
T Consensus       174 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~  247 (351)
T 3mi9_A          174 FSLAKNSQPNRYTNRVVTLWYRPPELLLG------ERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGS  247 (351)
T ss_dssp             CCCCSSSSCCCCCSSCSCGGGCCHHHHTT------CCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCC
T ss_pred             ccccccccccccCCcccccCccCchhhcC------CCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCC
Confidence            531          2345888999997532      244678999999999999999999999854322 11111111 11


Q ss_pred             c-cccccccch-hh--------ccChHHHHH------HHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          553 D-ESAWEVFDF-EL--------IMDKEMEEE------MRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       553 ~-~~~~~~~d~-~~--------~~~~~~~~~------~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      . ...+...+. ..        .......+.      ...+.+++.+||+.||++|||+.|+++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  311 (351)
T 3mi9_A          248 ITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN  311 (351)
T ss_dssp             CCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence            0 000100000 00        000001111      234778899999999999999999876

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=6.1e-37  Score=314.95  Aligned_cols=235  Identities=20%  Similarity=0.361  Sum_probs=188.7

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||.||+|+. .+++.||||.+...   ...+.+.+|+.++++++||||+++++++...+..++||||+++++
T Consensus        27 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~  106 (303)
T 3a7i_A           27 LEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGS  106 (303)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEE
T ss_pred             hhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEeCCCCc
Confidence            56799999999999985 46889999998754   234678899999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------  487 (640)
                      |.+++...      ++++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++.....      
T Consensus       107 L~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  177 (303)
T 3a7i_A          107 ALDLLEPG------PLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRN  177 (303)
T ss_dssp             HHHHHTTS------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBCCBC
T ss_pred             HHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeecccceecCccccccC
Confidence            99999643      488999999999999999999954   599999999999999999999999999876543      


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      ...++..|+|||++       ....++.++|||||||++|||+||+.||......  ...........      +.  ..
T Consensus       178 ~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~------~~--~~  240 (303)
T 3a7i_A          178 TFVGTPFWMAPEVI-------KQSAYDSKADIWSLGITAIELARGEPPHSELHPM--KVLFLIPKNNP------PT--LE  240 (303)
T ss_dssp             CCCSCGGGCCHHHH-------TTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHSCC------CC--CC
T ss_pred             ccCCCcCccCHHHH-------hcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHH--HHHHHhhcCCC------CC--Cc
Confidence            23457889999975       3345678999999999999999999999753221  11111111100      00  01


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM  601 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~  601 (640)
                      ...   ...+.+++..||+.||++|||+.++++.
T Consensus       241 ~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~~  271 (303)
T 3a7i_A          241 GNY---SKPLKEFVEACLNKEPSFRPTAKELLKH  271 (303)
T ss_dssp             SSC---CHHHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred             ccc---CHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence            111   2346677888999999999999999763

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=3.8e-37  Score=320.37  Aligned_cols=245  Identities=16%  Similarity=0.261  Sum_probs=186.2

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccccchHHHHHHHHHHhccC-CCcccceeEEEEc--CCeEEEEEeccCCC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVIGGLR-HSNIVSIRAYCNG--KDELFLVYDYLPHG  412 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~--~~~~~lV~Ey~~~g  412 (640)
                      ..+.||+|+||.||+|+. .+++.||||.++.. ..+.+.+|++++++++ ||||+++++++..  ....++||||++++
T Consensus        40 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~  118 (330)
T 3nsz_A           40 LVRKLGRGKYSEVFEAINITNNEKVVVKILKPV-KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNT  118 (330)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECCCCC
T ss_pred             EEEEecccCCeEEEEEEECCCCcEEEEEEeccc-chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEeccCch
Confidence            357899999999999985 56889999998743 4567889999999997 9999999999987  56799999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC-CeEEccCCcccccCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG-NACISDIGVHQLFHT----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~-~~kl~DfGl~~~~~~----  487 (640)
                      +|.+++.        .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++ .+||+|||+++....    
T Consensus       119 ~l~~~~~--------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~  187 (330)
T 3nsz_A          119 DFKQLYQ--------TLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEY  187 (330)
T ss_dssp             CHHHHGG--------GCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCCC
T ss_pred             hHHHHHH--------hCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCcc
Confidence            9999985        367889999999999999999954   599999999999999776 899999999986543    


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHH---HHhhccccccccc---
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWV---QMMGQDESAWEVF---  560 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~---~~~~~~~~~~~~~---  560 (640)
                       ...++..|+|||++.      ....++.++|||||||++|||+||+.||...........   +..... ......   
T Consensus       188 ~~~~~~~~y~aPE~~~------~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~  260 (330)
T 3nsz_A          188 NVRVASRYFKGPELLV------DYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTE-DLYDYIDKY  260 (330)
T ss_dssp             CSCCSCGGGCCHHHHT------TCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHH-HHHHHHHHT
T ss_pred             ccccccccccChhhhc------CCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCc-hhhhHHHHh
Confidence             234578899999752      224577899999999999999999999964332221111   111100 000000   


Q ss_pred             ----chh---------------hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          561 ----DFE---------------LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       561 ----d~~---------------~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                          ++.               ............++.+++.+||+.||++|||+.|+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~  319 (330)
T 3nsz_A          261 NIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  319 (330)
T ss_dssp             TCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             ccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence                000               0000000112345778888999999999999999975

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=1.6e-37  Score=324.76  Aligned_cols=238  Identities=18%  Similarity=0.263  Sum_probs=182.3

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccccchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERKKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      .+.||+|+||.||+|+.. +++.||||.+.....  ...+|++++.++ +||||+++++++.+.+..|+||||+++|+|.
T Consensus        27 ~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~  104 (342)
T 2qr7_A           27 KEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR--DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELL  104 (342)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC--CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCCSCBHH
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC--ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCCCCCcHH
Confidence            568999999999999965 578899999975522  234567777776 7999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC----CCeEEccCCcccccCC----
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL----GNACISDIGVHQLFHT----  487 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~----~~~kl~DfGl~~~~~~----  487 (640)
                      +++....     .+++.....++.|++.||+|||+.   +|+||||||+|||+.++    +.+||+|||+++....    
T Consensus       105 ~~i~~~~-----~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~  176 (342)
T 2qr7_A          105 DKILRQK-----FFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGL  176 (342)
T ss_dssp             HHHHTCT-----TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCC
T ss_pred             HHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCc
Confidence            9997543     589999999999999999999954   59999999999998533    3599999999986532    


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHHHHHHhhcccccccccchhh
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                        ...+|..|+|||++.       ...++.++|||||||++|||++|+.||..... ...+...........  . ... 
T Consensus       177 ~~~~~gt~~y~aPE~~~-------~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~--~-~~~-  245 (342)
T 2qr7_A          177 LMTPCYTANFVAPEVLE-------RQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFS--L-SGG-  245 (342)
T ss_dssp             BCCSSCCSSCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCC--C-CST-
T ss_pred             eeccCCCccccCHHHhc-------CCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcc--c-Ccc-
Confidence              234588999999753       33467899999999999999999999975322 222222222211100  0 000 


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       .....   ..++.+++..||+.||++||++.++++
T Consensus       246 -~~~~~---s~~~~~li~~~L~~dP~~R~t~~~il~  277 (342)
T 2qr7_A          246 -YWNSV---SDTAKDLVSKMLHVDPHQRLTAALVLR  277 (342)
T ss_dssp             -TTTTS---CHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             -ccccC---CHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence             00112   234566778899999999999999865

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=3.8e-37  Score=321.36  Aligned_cols=235  Identities=18%  Similarity=0.275  Sum_probs=188.1

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..+.||+|+||.||+++.. +++.||+|.+...     ...+.+.+|+.++++++||||+++++++...+..|+||||++
T Consensus        45 ~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  124 (335)
T 2owb_A           45 RGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCR  124 (335)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCT
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEecCC
Confidence            3578999999999999965 4788999998654     234567889999999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                      +++|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....   
T Consensus       125 ~~~L~~~~~~~~-----~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~  196 (335)
T 2owb_A          125 RRSLLELHKRRK-----ALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE  196 (335)
T ss_dssp             TCBHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTC
T ss_pred             CCCHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeeccCceecccCcc
Confidence            999999987543     588999999999999999999954   599999999999999999999999999976532   


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         ...++..|+|||++       ....++.++|||||||++|||+||+.||......  ..........         .
T Consensus       197 ~~~~~~gt~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~~~---------~  258 (335)
T 2owb_A          197 RKKVLCGTPNYIAPEVL-------SKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK--ETYLRIKKNE---------Y  258 (335)
T ss_dssp             CBCCCCSCCSSCCHHHH-------HTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHHTC---------C
T ss_pred             cccccCCCccccCHHHh-------ccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHH--HHHHHHhcCC---------C
Confidence               23457889999975       3345678999999999999999999999754321  1111111110         0


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .......   ..+.+++.+||+.||++||++.|+++
T Consensus       259 ~~~~~~~---~~~~~li~~~l~~dp~~Rps~~ell~  291 (335)
T 2owb_A          259 SIPKHIN---PVAASLIQKMLQTDPTARPTINELLN  291 (335)
T ss_dssp             CCCTTSC---HHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             CCCccCC---HHHHHHHHHHccCChhHCcCHHHHhc
Confidence            0111111   24566788899999999999999976

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=6.8e-37  Score=335.82  Aligned_cols=237  Identities=19%  Similarity=0.272  Sum_probs=188.5

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .++||+|+||+||+|+.. +++.||||++...    .....+.+|++++++++||||+++++++......|+||||+++|
T Consensus        27 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~  106 (486)
T 3mwu_A           27 VCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGG  106 (486)
T ss_dssp             EEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             eEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEEcCCCC
Confidence            578999999999999965 6889999998643    34567889999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC---CCCCeEEccCCcccccCC--
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD---QLGNACISDIGVHQLFHT--  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~---~~~~~kl~DfGl~~~~~~--  487 (640)
                      +|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||++   .++.+||+|||+++....  
T Consensus       107 ~L~~~~~~~~-----~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~  178 (486)
T 3mwu_A          107 ELFDEIIKRK-----RFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNT  178 (486)
T ss_dssp             BHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC-
T ss_pred             cHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCC
Confidence            9999887543     588999999999999999999954   599999999999995   456899999999986643  


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         ...+|+.|+|||++.        ..++.++||||+||++|||++|+.||.....  ....+.........   +  .
T Consensus       179 ~~~~~~gt~~y~aPE~~~--------~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~i~~~~~~~---~--~  243 (486)
T 3mwu_A          179 KMKDRIGTAYYIAPEVLR--------GTYDEKCDVWSAGVILYILLSGTPPFYGKNE--YDILKRVETGKYAF---D--L  243 (486)
T ss_dssp             ---CCTTGGGGCCGGGGG--------SCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTCCCS---C--S
T ss_pred             ccCCCcCCCCCCCHHHhC--------CCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhCCCCC---C--C
Confidence               245688999999753        2477899999999999999999999975432  11122211111000   0  0


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                         +.......++.+++..||+.||++|||+.++++
T Consensus       244 ---~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~  276 (486)
T 3mwu_A          244 ---PQWRTISDDAKDLIRKMLTFHPSLRITATQCLE  276 (486)
T ss_dssp             ---GGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             ---cccCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence               011112234667788899999999999999986

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=5.1e-37  Score=337.44  Aligned_cols=243  Identities=20%  Similarity=0.286  Sum_probs=187.5

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ..+.||+|+||.||+|+.. ++..||||++...    .....+.+|+++++.++|||||+++++|......|+||||+++
T Consensus        41 ~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~  120 (494)
T 3lij_A           41 RVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKG  120 (494)
T ss_dssp             EEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCCS
T ss_pred             EeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCC
Confidence            3578999999999999965 6788999998754    2356788999999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC---CCCeEEccCCcccccCC-
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ---LGNACISDIGVHQLFHT-  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~---~~~~kl~DfGl~~~~~~-  487 (640)
                      |+|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||++.   ++.+||+|||+++.... 
T Consensus       121 g~L~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~  192 (494)
T 3lij_A          121 GELFDEIIHRM-----KFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQ  192 (494)
T ss_dssp             CBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTT
T ss_pred             CcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCC
Confidence            99999887543     588999999999999999999954   5999999999999976   45599999999987643 


Q ss_pred             ----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchh
Q 006559          488 ----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       488 ----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                          ...+|..|+|||++.        ..++.++||||+||++|||++|+.||......  ...+........   ++. 
T Consensus       193 ~~~~~~~gt~~y~aPE~l~--------~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~i~~~~~~---~~~-  258 (494)
T 3lij_A          193 KKMKERLGTAYYIAPEVLR--------KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQ--EILRKVEKGKYT---FDS-  258 (494)
T ss_dssp             BCBCCCCSCTTTCCHHHHT--------TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHTCCC---CCS-
T ss_pred             ccccccCCCcCeeCHHHHc--------ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhCCCC---CCc-
Confidence                235688999999752        35778999999999999999999999754322  222221111100   000 


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHh
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDI  605 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i  605 (640)
                          +........+.+++..||+.||++|||+.++++  .+.+.
T Consensus       259 ----~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~hp~~~~~  298 (494)
T 3lij_A          259 ----PEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEHPWIKEM  298 (494)
T ss_dssp             ----GGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHHHH
T ss_pred             ----hhcccCCHHHHHHHHHHCCCChhhCccHHHHhcCcccccC
Confidence                011112234667788899999999999999974  35444

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=1.6e-37  Score=318.98  Aligned_cols=250  Identities=24%  Similarity=0.333  Sum_probs=174.0

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ..+.||+|+||.||+|+. .+++.||||.+...   ...+++.+|++++++++||||+++++++...+..++||||+++|
T Consensus        19 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   98 (303)
T 2vwi_A           19 LQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGG   98 (303)
T ss_dssp             EEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEEECCTTC
T ss_pred             hhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEehhccCC
Confidence            357899999999999985 46889999998654   23456778899999999999999999999999999999999999


Q ss_pred             CHHHhhccC---CCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--
Q 006559          413 SLHSLLHGS---RGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--  487 (640)
Q Consensus       413 sL~~~l~~~---~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--  487 (640)
                      +|.+++...   .......+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....  
T Consensus        99 ~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~  175 (303)
T 2vwi_A           99 SVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGG  175 (303)
T ss_dssp             BHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCHHHHHCC---
T ss_pred             chHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEEeccchheeccCC
Confidence            999998631   111123589999999999999999999954   599999999999999999999999999876532  


Q ss_pred             ---------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccc-
Q 006559          488 ---------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAW-  557 (640)
Q Consensus       488 ---------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~-  557 (640)
                               ...++..|+|||++.      ....++.++|||||||++|||+||+.||..................... 
T Consensus       176 ~~~~~~~~~~~~~~~~y~aPE~~~------~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  249 (303)
T 2vwi_A          176 DITRNKVRKTFVGTPCWMAPEVME------QVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLET  249 (303)
T ss_dssp             ------------CCCTTCCHHHHH------HHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTTC
T ss_pred             CccchhhhcccCCCccccCHHHhc------cccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCcccc
Confidence                     234578899999752      1235678999999999999999999999754322111111111100000 


Q ss_pred             cccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       558 ~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ...+....  .   ....++.+++.+||+.||++||++.++++
T Consensus       250 ~~~~~~~~--~---~~~~~~~~li~~~l~~dp~~Rps~~~ll~  287 (303)
T 2vwi_A          250 GVQDKEML--K---KYGKSFRKMISLCLQKDPEKRPTAAELLR  287 (303)
T ss_dssp             -----CCC--C---CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             ccccchhh--h---hhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence            00011110  1   11234667888899999999999999975

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=2.9e-37  Score=314.34  Aligned_cols=234  Identities=18%  Similarity=0.258  Sum_probs=188.3

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+.. ++..||||.+...     ...+.+.+|++++++++||||+++++++...+..++||||+++
T Consensus        19 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   98 (284)
T 2vgo_A           19 GRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPR   98 (284)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred             eheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEEEeCCC
Confidence            568999999999999965 5778999998643     2245688999999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....     .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||++.....    
T Consensus        99 ~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  170 (284)
T 2vgo_A           99 GELYKELQKHG-----RFDEQRSATFMEELADALHYCHE---RKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRR  170 (284)
T ss_dssp             EEHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECTTCCEEECCCTTCEECSSSCBC
T ss_pred             CcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEEcCCCCEEEecccccccCcccccc
Confidence            99999997543     48899999999999999999994   5699999999999999999999999999876543    


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      ...++..|+|||++.       ...++.++||||||+++|||++|+.||......  ...+.....         ....+
T Consensus       171 ~~~~~~~y~aPE~~~-------~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~~---------~~~~~  232 (284)
T 2vgo_A          171 TMCGTLDYLPPEMIE-------GKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHT--ETHRRIVNV---------DLKFP  232 (284)
T ss_dssp             CCCSCGGGCCHHHHT-------TCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHTT---------CCCCC
T ss_pred             cccCCCCcCCHHHhc-------cCCCCcccchhhHHHHHHHHHHCCCCCCCCCHh--HHHHHHhcc---------ccCCC
Confidence            235688999999753       345678999999999999999999999754321  111111110         01111


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ...+   .++.+++..|++.||++||++.++++
T Consensus       233 ~~~~---~~~~~li~~~l~~~p~~Rps~~~ll~  262 (284)
T 2vgo_A          233 PFLS---DGSKDLISKLLRYHPPQRLPLKGVME  262 (284)
T ss_dssp             TTSC---HHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CcCC---HHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence            1122   24567788899999999999999975

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=9.9e-38  Score=318.48  Aligned_cols=251  Identities=18%  Similarity=0.255  Sum_probs=179.9

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccccc----hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERKK----KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~----~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|+. .+++.||||+++....    .+.+.++...++.++||||+++++++...+..++||||++ |
T Consensus        12 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~~-~   90 (290)
T 3fme_A           12 IMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMD-T   90 (290)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEEECCS-E
T ss_pred             HHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEEehhc-c
Confidence            56899999999999996 5788999999976522    2234445556888999999999999999999999999997 5


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.+++..... ....+++..+..++.|++.||+|||+.  .+|+||||||+||+++.++.+||+|||+++.....    
T Consensus        91 ~l~~~l~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  167 (290)
T 3fme_A           91 SLDKFYKQVID-KGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKD  167 (290)
T ss_dssp             EHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHHHH--SCCCCCCCSGGGCEECTTCCEEBCCC-------------
T ss_pred             chHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeecCCccccccccccc
Confidence            88877653211 112589999999999999999999963  25999999999999999999999999998765432    


Q ss_pred             -ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          489 -FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       489 -~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                       ..++..|+|||++...   .....++.++|||||||++|||+||+.||...........+.......       .. ..
T Consensus       168 ~~~~t~~y~aPE~~~~~---~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~-------~~-~~  236 (290)
T 3fme_A          168 IDAGCKPYMAPERINPE---LNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSP-------QL-PA  236 (290)
T ss_dssp             --CCCCCCSCHHHHSCC---TTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCC-------CC-CT
T ss_pred             ccCCCccccChhhcChh---hcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCCC-------Cc-cc
Confidence             3468899999975211   234557789999999999999999999997543333222222221110       00 00


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhh
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDIR  606 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i~  606 (640)
                      .   ....++.+++.+||+.||++|||+.|+++  .+....
T Consensus       237 ~---~~~~~~~~li~~~l~~~p~~Rpt~~e~l~hp~f~~~~  274 (290)
T 3fme_A          237 D---KFSAEFVDFTSQCLKKNSKERPTYPELMQHPFFTLHE  274 (290)
T ss_dssp             T---TSCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHHH
T ss_pred             c---cCCHHHHHHHHHHhhcChhhCcCHHHHHhCcccccCc
Confidence            1   11234677888899999999999999976  554443

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=6.4e-37  Score=310.20  Aligned_cols=235  Identities=19%  Similarity=0.294  Sum_probs=182.8

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+.. +++.||||.+...     ...+.+.+|++.++.++||||+++++++...+..++||||+++
T Consensus        16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   95 (276)
T 2h6d_A           16 GDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSG   95 (276)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCCS
T ss_pred             EeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEEeccCC
Confidence            567999999999999975 6889999998654     2245678899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---  488 (640)
                      ++|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++......   
T Consensus        96 ~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~  167 (276)
T 2h6d_A           96 GELFDYICKHG-----RVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFL  167 (276)
T ss_dssp             CBHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC----
T ss_pred             CcHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeecccccccCCCcce
Confidence            99999997543     478999999999999999999954   5999999999999999999999999998876432   


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                        ..++..|+|||++...      ...+.++||||||+++|||++|+.||.....  ....+......         ...
T Consensus       168 ~~~~~~~~y~aPE~~~~~------~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~~~~~~~~~~~---------~~~  230 (276)
T 2h6d_A          168 RTSCGSPNYAAPEVISGR------LYAGPEVDIWSCGVILYALLCGTLPFDDEHV--PTLFKKIRGGV---------FYI  230 (276)
T ss_dssp             ---------CCTGGGTTS------CCCHHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCC---------CCC
T ss_pred             ecccCCccccCHHHHcCC------CCCCccchHHHHHHHHHHHHhCCCCCCCCcH--HHHHHHhhcCc---------ccC
Confidence              3457889999975322      1235789999999999999999999975432  11111111110         001


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      +...   ...+.+++.+||+.||++|||+.++++
T Consensus       231 ~~~~---~~~l~~li~~~l~~~p~~Rps~~~~l~  261 (276)
T 2h6d_A          231 PEYL---NRSVATLLMHMLQVDPLKRATIKDIRE  261 (276)
T ss_dssp             CTTS---CHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             chhc---CHHHHHHHHHHccCChhhCCCHHHHHh
Confidence            1111   234667788899999999999999976

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=3.5e-37  Score=319.68  Aligned_cols=240  Identities=20%  Similarity=0.281  Sum_probs=184.3

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc----------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEE
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLV  405 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV  405 (640)
                      ..+.||+|+||.||+|+.. +++.||||.+....          ....+.+|++++++++||||+++++++...+ .|+|
T Consensus        14 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-~~lv   92 (322)
T 2ycf_A           14 MSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED-YYIV   92 (322)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS-EEEE
T ss_pred             EeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc-eEEE
Confidence            3578999999999999964 57889999986431          1234778999999999999999999997655 8999


Q ss_pred             EeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC---eEEccCCcc
Q 006559          406 YDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN---ACISDIGVH  482 (640)
Q Consensus       406 ~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~---~kl~DfGl~  482 (640)
                      |||+++|+|.+++....     .+++.....++.|++.||+|||+.   +|+||||||+|||++.++.   +||+|||++
T Consensus        93 ~e~~~~~~L~~~~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~  164 (322)
T 2ycf_A           93 LELMEGGELFDKVVGNK-----RLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFGHS  164 (322)
T ss_dssp             EECCTTEETHHHHSTTC-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSSCCEEECCCTTC
T ss_pred             EecCCCCcHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCCCeEEEccCccc
Confidence            99999999999987543     588999999999999999999954   5999999999999987654   999999999


Q ss_pred             cccCCC-----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc--chHHHHHHhhcccc
Q 006559          483 QLFHTP-----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL--GIVKWVQMMGQDES  555 (640)
Q Consensus       483 ~~~~~~-----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~--~~~~~~~~~~~~~~  555 (640)
                      +.....     ..++..|+|||++..    .....++.++|||||||++|||+||+.||.....  .....+.....   
T Consensus       165 ~~~~~~~~~~~~~gt~~y~aPE~~~~----~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~---  237 (322)
T 2ycf_A          165 KILGETSLMRTLCGTPTYLAPEVLVS----VGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKY---  237 (322)
T ss_dssp             EECCCCHHHHHHHSCCTTCCHHHHHH----TTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHHHTCC---
T ss_pred             eecccccccccccCCcCccCchhhcc----CCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHhCcc---
Confidence            876543     245889999997521    1234577899999999999999999999975322  22221111000   


Q ss_pred             cccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          556 AWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       556 ~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                        . ..+.     .......++.+++.+||+.||++||++.++++
T Consensus       238 --~-~~~~-----~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~  274 (322)
T 2ycf_A          238 --N-FIPE-----VWAEVSEKALDLVKKLLVVDPKARFTTEEALR  274 (322)
T ss_dssp             --C-CCHH-----HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             --c-cCch-----hhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence              0 0000     01122345777888999999999999999873

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=2.8e-37  Score=316.06  Aligned_cols=235  Identities=18%  Similarity=0.275  Sum_probs=188.0

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..+.||+|+||.||+++.. +++.||+|.+...     ...+.+.+|+.++++++||||+++++++...+..++||||++
T Consensus        19 ~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   98 (294)
T 2rku_A           19 RGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCR   98 (294)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred             EEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEEecCC
Confidence            3578999999999999975 5788999998654     224567789999999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                      +++|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....   
T Consensus        99 ~~~L~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~  170 (294)
T 2rku_A           99 RRSLLELHKRRK-----ALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE  170 (294)
T ss_dssp             TCBHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTC
T ss_pred             CCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEeccCceecccCcc
Confidence            999999987543     588999999999999999999954   599999999999999999999999999876532   


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         ...++..|+|||++       ....++.++||||||+++|||+||+.||......  ..........         .
T Consensus       171 ~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~~~---------~  232 (294)
T 2rku_A          171 RKKVLCGTPNYIAPEVL-------SKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK--ETYLRIKKNE---------Y  232 (294)
T ss_dssp             CBCCCCSCCSSCCHHHH-------TTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHTTC---------C
T ss_pred             ccccccCCCCcCCcchh-------ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHhhcc---------C
Confidence               23457889999975       3345678999999999999999999999754321  1111111110         0


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..+....   ..+.+++.+||+.||++|||+.++++
T Consensus       233 ~~~~~~~---~~~~~li~~~l~~~p~~Rps~~~ll~  265 (294)
T 2rku_A          233 SIPKHIN---PVAASLIQKMLQTDPTARPTINELLN  265 (294)
T ss_dssp             CCCTTSC---HHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             CCccccC---HHHHHHHHHHcccChhhCcCHHHHhh
Confidence            0111112   24566788899999999999999976

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=3.5e-37  Score=339.82  Aligned_cols=238  Identities=18%  Similarity=0.220  Sum_probs=188.7

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .++||+|+||.||+|+.. +|+.||||++...     .....+.+|++++++++|||||++++++.+.+..|+||||+++
T Consensus       189 ~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmEy~~g  268 (576)
T 2acx_A          189 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNG  268 (576)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEEEEcCCC
Confidence            467999999999999974 6899999999653     2345577899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....   ...+++..+..++.||+.||+|||+.   +||||||||+|||++.++.+||+|||+++....    
T Consensus       269 g~L~~~l~~~~---~~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~~~  342 (576)
T 2acx_A          269 GDLKFHIYHMG---QAGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTI  342 (576)
T ss_dssp             CBHHHHHHSSS---SCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCE
T ss_pred             CcHHHHHHhcC---CCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEecccceecccCccc
Confidence            99999997543   22489999999999999999999954   599999999999999999999999999987643    


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc--hHHHHHHhhcccccccccchhh
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG--IVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                       ...+|..|+|||++.       ...++.++|||||||++|||+||+.||......  .....+.....         ..
T Consensus       343 ~~~~GT~~Y~APEvl~-------~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~---------~~  406 (576)
T 2acx_A          343 KGRVGTVGYMAPEVVK-------NERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEV---------PE  406 (576)
T ss_dssp             ECCCSCGGGCCHHHHT-------TCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHC---------CC
T ss_pred             cccCCCccccCHHHHc-------CCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcc---------cc
Confidence             245689999999753       345678999999999999999999999753221  11111111111         00


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRP-----NMSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RP-----s~~~v~~  600 (640)
                      ......+   .++.+++..||+.||++||     ++.||.+
T Consensus       407 ~~p~~~s---~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~  444 (576)
T 2acx_A          407 EYSERFS---PQARSLCSQLLCKDPAERLGCRGGSAREVKE  444 (576)
T ss_dssp             CCCTTSC---HHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred             cCCccCC---HHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence            0111122   3466677889999999999     6677753

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=2.7e-37  Score=333.24  Aligned_cols=189  Identities=23%  Similarity=0.338  Sum_probs=159.7

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc-chHHHHHHHHHHhcc------CCCcccceeEEEEcCCeEEEEEec
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-KKREVDEWLRVIGGL------RHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-~~~~~~~e~~~l~~l------~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      ..++||+|+||.||+|+.. +++.||||+++... ..+++.+|+++++.+      +|+||+++++++...+..++||||
T Consensus       101 ~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~  180 (429)
T 3kvw_A          101 VLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFEL  180 (429)
T ss_dssp             EEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEEEEECC
T ss_pred             EEEEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEEEEEec
Confidence            3578999999999999864 57899999997653 345666777777665      677999999999999999999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC--eEEccCCcccccC
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN--ACISDIGVHQLFH  486 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~--~kl~DfGl~~~~~  486 (640)
                      +. |+|.+++.....   ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.  +||+|||+++...
T Consensus       181 ~~-~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~  253 (429)
T 3kvw_A          181 LS-MNLYELIKKNKF---QGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEH  253 (429)
T ss_dssp             CC-CBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCEEECCCTTCEETT
T ss_pred             cC-CCHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcceEEeecccceecC
Confidence            96 699999876532   2489999999999999999999954   5999999999999999887  9999999997654


Q ss_pred             C---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 006559          487 T---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG  539 (640)
Q Consensus       487 ~---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~  539 (640)
                      .   ...+|..|+|||++.       ...++.++|||||||++|||+||+.||...
T Consensus       254 ~~~~~~~gt~~y~aPE~~~-------~~~~~~~~DiwSlG~il~elltG~~pf~~~  302 (429)
T 3kvw_A          254 QRVYTYIQSRFYRAPEVIL-------GARYGMPIDMWSLGCILAELLTGYPLLPGE  302 (429)
T ss_dssp             CCCCSSCSCGGGCCHHHHH-------TBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CcccccCCCCCccChHHHh-------CCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence            3   345688999999753       345788999999999999999999999754

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=4.7e-37  Score=337.07  Aligned_cols=244  Identities=20%  Similarity=0.309  Sum_probs=192.6

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..++||+|+||.||+|+.. +++.||||++...     ...+.+.+|++++++++||||+++++++...+..|+||||++
T Consensus        30 ~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~  109 (484)
T 3nyv_A           30 GQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYT  109 (484)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCC
T ss_pred             EeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCC
Confidence            3578999999999999965 6889999998643     335678899999999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE---CCCCCeEEccCCcccccCC
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV---DQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl---~~~~~~kl~DfGl~~~~~~  487 (640)
                      +|+|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||+   +.++.+||+|||+++.+..
T Consensus       110 ~~~L~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~  181 (484)
T 3nyv_A          110 GGELFDEIISRK-----RFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEA  181 (484)
T ss_dssp             SCBHHHHHHTCS-----CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCC
T ss_pred             CCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEccc
Confidence            999999987543     589999999999999999999954   59999999999999   4678999999999987654


Q ss_pred             C-----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccch
Q 006559          488 P-----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       488 ~-----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                      .     ..+|..|+|||++.        ..++.++||||+||++|||++|+.||......  ...+.........     
T Consensus       182 ~~~~~~~~gt~~y~aPE~~~--------~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~i~~~~~~~-----  246 (484)
T 3nyv_A          182 SKKMKDKIGTAYYIAPEVLH--------GTYDEKCDVWSTGVILYILLSGCPPFNGANEY--DILKKVEKGKYTF-----  246 (484)
T ss_dssp             CCSHHHHTTGGGTCCHHHHH--------TCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCCCCC-----
T ss_pred             ccccccCCCCccccCceeec--------CCCCCcceeHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHcCCCCC-----
Confidence            2     34688999999752        24778999999999999999999999754321  1122211111000     


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhh
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDIR  606 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i~  606 (640)
                      ..   +........+.+++.+||+.||++|||+.++++  .++...
T Consensus       247 ~~---~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h~~~~~~~  289 (484)
T 3nyv_A          247 EL---PQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTYT  289 (484)
T ss_dssp             CS---GGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHHHT
T ss_pred             CC---cccccCCHHHHHHHHHHCCCChhHCcCHHHHhhChhhcccc
Confidence            00   011112234667788899999999999999975  555443

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=2.9e-37  Score=333.43  Aligned_cols=185  Identities=19%  Similarity=0.324  Sum_probs=156.2

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcC-----CeEEEEE
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGK-----DELFLVY  406 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~-----~~~~lV~  406 (640)
                      ..+.||+|+||.||+|+.. +++.||||++...    ...+.+.+|++++++++||||+++++++...     ...|+||
T Consensus        30 ~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~  109 (432)
T 3n9x_A           30 IKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDELYIVL  109 (432)
T ss_dssp             EEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEE
T ss_pred             EEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeEEEEE
Confidence            3578999999999999964 5788999999754    2345678899999999999999999999765     5799999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||++ |+|.+++....     .+++..+..++.||++||+|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus       110 e~~~-~~L~~~~~~~~-----~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFGla~~~~  180 (432)
T 3n9x_A          110 EIAD-SDLKKLFKTPI-----FLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFGLARTIN  180 (432)
T ss_dssp             ECCS-EEHHHHHHSSC-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEEC-
T ss_pred             ecCC-cCHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCCCccccc
Confidence            9987 69999997543     589999999999999999999954   59999999999999999999999999998653


Q ss_pred             ----------------------------CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCC
Q 006559          487 ----------------------------TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAK  536 (640)
Q Consensus       487 ----------------------------~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~  536 (640)
                                                  ....+|..|+|||++.      ....++.++||||+||++|||+||..||
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~------~~~~~~~~~DiwSlG~il~ell~g~~p~  252 (432)
T 3n9x_A          181 SEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELIL------LQENYTKSIDIWSTGCIFAELLNMLQSH  252 (432)
T ss_dssp             ------------------------------CCCCCTTCCHHHHT------TCSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred             ccccccccccccccccccccccchhccccCCCCCccccCHHHHh------cCCCCCcccccchHHHHHHHHHhccccc
Confidence                                        2345688999999742      3345788999999999999999865544

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-36  Score=321.85  Aligned_cols=252  Identities=19%  Similarity=0.293  Sum_probs=182.6

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCC------eEEEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKD------ELFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~------~~~lV~  406 (640)
                      .+.||+|+||.||+|+. .+|+.||||++...    ...+.+.+|+++++.++||||+++++++....      ..|+||
T Consensus        30 ~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~  109 (367)
T 1cm8_A           30 LQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVM  109 (367)
T ss_dssp             EEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEE
T ss_pred             eEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCceEEEEE
Confidence            56799999999999996 56899999998643    22356778999999999999999999997653      469999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||+ +++|.+++...      .+++..+..++.|+++||+|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus       110 e~~-~~~L~~~~~~~------~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  179 (367)
T 1cm8_A          110 PFM-GTDLGKLMKHE------KLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLARQAD  179 (367)
T ss_dssp             ECC-SEEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             ecC-CCCHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEeeecccccc
Confidence            999 78999999753      478999999999999999999954   59999999999999999999999999998764


Q ss_pred             C---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHH-HHHHhhcccc-cc-cc
Q 006559          487 T---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVK-WVQMMGQDES-AW-EV  559 (640)
Q Consensus       487 ~---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~-~~~~~~~~~~-~~-~~  559 (640)
                      .   ...+|..|+|||++.+      ...++.++||||+||++|||++|+.||.+.... ... ..+..+.... .. .+
T Consensus       180 ~~~~~~~~t~~y~aPE~~~~------~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~  253 (367)
T 1cm8_A          180 SEMTGYVVTRWYRAPEVILN------WMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRL  253 (367)
T ss_dssp             SSCCSSCSCGGGCCTHHHHT------TTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTC
T ss_pred             cccCcCcCCCCcCCHHHHhC------CCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHh
Confidence            3   3456889999997532      245788999999999999999999999754321 111 1111111100 00 00


Q ss_pred             cch-------hh------ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHh
Q 006559          560 FDF-------EL------IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDI  605 (640)
Q Consensus       560 ~d~-------~~------~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i  605 (640)
                      ...       .+      ............+.+++.+||+.||++|||+.|+++  .++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~hp~f~~~  314 (367)
T 1cm8_A          254 QSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESL  314 (367)
T ss_dssp             SCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTT
T ss_pred             hhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcChHHHhh
Confidence            000       00      000000112345677888899999999999999876  34443

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=4.8e-37  Score=331.87  Aligned_cols=249  Identities=21%  Similarity=0.237  Sum_probs=182.7

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccCCCCHHH
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~  416 (640)
                      .++||+|+||+||.+...+|+.||||++.... .+.+.+|++++.++ +|||||++++++...+..|+||||+. |+|.+
T Consensus        20 ~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~-~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~-gsL~~   97 (434)
T 2rio_A           20 EKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF-CDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN-LNLQD   97 (434)
T ss_dssp             EEEEEECSTTCEEEEEESSSSEEEEEEEEGGG-HHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-EEHHH
T ss_pred             cCeEeeCCCeEEEEEEEECCeEEEEEEEcHHH-HHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-CCHHH
Confidence            46799999999987777789999999986542 34567889988876 89999999999999999999999996 69999


Q ss_pred             hhccCCCCCC--CCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC-------------CCeEEccCCc
Q 006559          417 LLHGSRGPGR--MPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL-------------GNACISDIGV  481 (640)
Q Consensus       417 ~l~~~~~~~~--~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~-------------~~~kl~DfGl  481 (640)
                      ++........  ....+..++.++.||+.||+|||+.   +|+||||||+|||++.+             +.+||+|||+
T Consensus        98 ~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~  174 (434)
T 2rio_A           98 LVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGL  174 (434)
T ss_dssp             HHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTT
T ss_pred             HHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCCCceEEEEccccc
Confidence            9986542111  0112334578999999999999954   59999999999999654             4899999999


Q ss_pred             ccccCC----------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHh
Q 006559          482 HQLFHT----------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMM  550 (640)
Q Consensus       482 ~~~~~~----------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~  550 (640)
                      ++....          ...+|..|+|||++.+.........++.++|||||||++|||+| |+.||.+.........+..
T Consensus       175 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~i~~~~  254 (434)
T 2rio_A          175 CKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRESNIIRGI  254 (434)
T ss_dssp             CEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHHHHHHHTC
T ss_pred             ceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhHHHHhcCC
Confidence            987643          12468899999987554333334678899999999999999999 9999975432222222111


Q ss_pred             hcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          551 GQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       551 ~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ....      .......   .....++.+++.+||+.||++|||+.+|++
T Consensus       255 ~~~~------~~~~~~~---~~~~~~~~~li~~~L~~dP~~Rps~~eil~  295 (434)
T 2rio_A          255 FSLD------EMKCLHD---RSLIAEATDLISQMIDHDPLKRPTAMKVLR  295 (434)
T ss_dssp             CCCC------CCTTCCC---HHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCcc------ccccccc---ccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence            1100      0011111   233456778888999999999999999974

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=3.7e-38  Score=334.50  Aligned_cols=246  Identities=17%  Similarity=0.175  Sum_probs=180.5

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc-----cchHHHHHHH---HHHhccCCCccccee-------EEEEcCC-
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER-----KKKREVDEWL---RVIGGLRHSNIVSIR-------AYCNGKD-  400 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-----~~~~~~~~e~---~~l~~l~H~niv~l~-------~~~~~~~-  400 (640)
                      .+.||+|+||.||+|+. .+|+.||||++...     ...+.+.+|+   +.+++++|||||+++       +++...+ 
T Consensus        78 ~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~~~~  157 (377)
T 3byv_A           78 GTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQK  157 (377)
T ss_dssp             EEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEECTTS
T ss_pred             cceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhccCC
Confidence            57899999999999995 56899999998643     2346678888   566677899999998       6666553 


Q ss_pred             ----------------eEEEEEeccCCCCHHHhhccCCC--CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCC
Q 006559          401 ----------------ELFLVYDYLPHGSLHSLLHGSRG--PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLS  462 (640)
Q Consensus       401 ----------------~~~lV~Ey~~~gsL~~~l~~~~~--~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk  462 (640)
                                      ..|+||||+ +|+|.+++.....  .....++|..++.++.|++.||+|||+.   +|+|||||
T Consensus       158 ~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDik  233 (377)
T 3byv_A          158 KKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GLVHTYLR  233 (377)
T ss_dssp             CSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---TEECSCCC
T ss_pred             ccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---CeecCCCC
Confidence                            289999999 6899999975321  1112456788999999999999999964   59999999


Q ss_pred             CCCeEECCCCCeEEccCCcccccCC---CccccccccCCccccCCCC----ccccCCCCCccchHHHHHHHHHHHhCCCC
Q 006559          463 SSNIVVDQLGNACISDIGVHQLFHT---PFFINDAYNAPELKFNNNN----NYSQRKFWQRCDVYSFGVVLLEILTGKMA  535 (640)
Q Consensus       463 ~~NILl~~~~~~kl~DfGl~~~~~~---~~~~~~~y~aPE~~~~~~~----~~~~~~~~~k~DV~SfGvvl~el~tg~~p  535 (640)
                      |+|||++.++.+||+|||+++....   ...+ ..|+|||++.....    ......++.++|||||||++|||+||+.|
T Consensus       234 p~NIll~~~~~~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~P  312 (377)
T 3byv_A          234 PVDIVLDQRGGVFLTGFEHLVRDGARVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLP  312 (377)
T ss_dssp             GGGEEECTTCCEEECCGGGCEETTCEEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHEEEcCCCCEEEEechhheecCCcccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCC
Confidence            9999999999999999999987543   2345 88999997532100    00012578899999999999999999999


Q ss_pred             CCCCCcchHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhh
Q 006559          536 KGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDIR  606 (640)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i~  606 (640)
                      |.......           ....+...    ....   ..++.+++.+||+.||++||++.++++  .++++.
T Consensus       313 f~~~~~~~-----------~~~~~~~~----~~~~---~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~  367 (377)
T 3byv_A          313 ITKDAALG-----------GSEWIFRS----CKNI---PQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLR  367 (377)
T ss_dssp             C------C-----------CSGGGGSS----CCCC---CHHHHHHHHHHTCSSGGGCCCHHHHHTSHHHHHHH
T ss_pred             Cccccccc-----------chhhhhhh----ccCC---CHHHHHHHHHHcCCCchhCCCHHHHhhChHHHHHH
Confidence            96432100           00011110    0111   234667788899999999999999985  555554

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=8.1e-38  Score=323.76  Aligned_cols=251  Identities=22%  Similarity=0.336  Sum_probs=188.1

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ..+.||+|+||.||+|+..+  .+|+|.++..    ...+.+.+|+.++++++||||+++++++...+..++||||++++
T Consensus        37 ~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e~~~~~  114 (319)
T 2y4i_B           37 IGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGR  114 (319)
T ss_dssp             CCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECBCCCSE
T ss_pred             EeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEeecccCC
Confidence            35789999999999999764  4899998743    22345678899999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      +|.+++....    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++ ++.+||+|||+++....     
T Consensus       115 ~L~~~l~~~~----~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~  186 (319)
T 2y4i_B          115 TLYSVVRDAK----IVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGR  186 (319)
T ss_dssp             EHHHHTTSSC----CCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEECCCSCCC---------
T ss_pred             cHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEeecCCccccccccccc
Confidence            9999997643    2578899999999999999999954   599999999999998 68999999999765421     


Q ss_pred             ------CccccccccCCccccCCCCc--cccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccc
Q 006559          488 ------PFFINDAYNAPELKFNNNNN--YSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       488 ------~~~~~~~y~aPE~~~~~~~~--~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  559 (640)
                            ...++..|+|||++......  .....++.++|||||||++|||+||+.||.........+  .......    
T Consensus       187 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~--~~~~~~~----  260 (319)
T 2y4i_B          187 REDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIW--QMGTGMK----  260 (319)
T ss_dssp             -CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHHH--HHHTTCC----
T ss_pred             cccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHH--HhccCCC----
Confidence                  12357789999986432111  123457889999999999999999999997544322221  1111100    


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG  609 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~  609 (640)
                        +... ...   ...++.+++..||+.||++|||+.+++++|+++..+.
T Consensus       261 --~~~~-~~~---~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~  304 (319)
T 2y4i_B          261 --PNLS-QIG---MGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRN  304 (319)
T ss_dssp             --CCCC-CSS---CCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC----
T ss_pred             --CCCC-cCC---CCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhh
Confidence              0000 001   1123667788899999999999999999999988664

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=3e-37  Score=313.18  Aligned_cols=244  Identities=18%  Similarity=0.240  Sum_probs=185.9

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEc--CCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNG--KDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~--~~~~~lV~Ey~~  410 (640)
                      .+.||+|+||.||+++.. +++.||+|.+...    ...+.+.+|++++++++||||+++++++..  ....++||||++
T Consensus        11 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~   90 (279)
T 2w5a_A           11 LYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCE   90 (279)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEEEECCT
T ss_pred             ehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEEEeCCC
Confidence            567999999999999965 6889999998754    234567889999999999999999998854  568999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCC--CCCceecCCCCCCeEECCCCCeEEccCCcccccCCC
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN--KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP  488 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~--~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~  488 (640)
                      +|+|.+++..... ....+++..+..++.|++.||+|||+.+  ..+|+||||||+||+++.++.+||+|||+++.....
T Consensus        91 ~~~L~~~l~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~~~~  169 (279)
T 2w5a_A           91 GGDLASVITKGTK-ERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHD  169 (279)
T ss_dssp             TEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHHHC---
T ss_pred             CCCHHHHHHhhcc-cCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchheeeccc
Confidence            9999999875321 1224899999999999999999999543  123999999999999999999999999998876432


Q ss_pred             ------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccch
Q 006559          489 ------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       489 ------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                            ..++..|+|||++.       ...++.++|||||||++|||+||+.||......  .......... ..     
T Consensus       170 ~~~~~~~~~~~~y~aPE~~~-------~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~i~~~~-~~-----  234 (279)
T 2w5a_A          170 TSFAKTFVGTPYYMSPEQMN-------RMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK--ELAGKIREGK-FR-----  234 (279)
T ss_dssp             CHHHHHHHSCCTTCCHHHHH-------CC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHTC-CC-----
T ss_pred             cccccccCCCccccChHHhc-------cCCCCchhhHHHHHHHHHHHHHCCCCCcccCHH--HHHHHHhhcc-cc-----
Confidence                  24578899999753       345678999999999999999999999754321  1111111110 00     


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMI  602 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L  602 (640)
                      .  .+..   ...++.+++.+||+.||++||++.|+++.+
T Consensus       235 ~--~~~~---~~~~l~~li~~~l~~~p~~Rps~~~ll~~~  269 (279)
T 2w5a_A          235 R--IPYR---YSDELNEIITRMLNLKDYHRPSVEEILENP  269 (279)
T ss_dssp             C--CCTT---SCHHHHHHHHHHTCSSGGGSCCHHHHHTST
T ss_pred             c--CCcc---cCHHHHHHHHHHcCCCcccCCCHHHHHhCh
Confidence            0  0111   123466778889999999999999998755

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=8.3e-37  Score=336.59  Aligned_cols=237  Identities=21%  Similarity=0.331  Sum_probs=186.1

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc---------------chHHHHHHHHHHhccCCCcccceeEEEEcCCe
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK---------------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDE  401 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~---------------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~  401 (640)
                      .+.||+|+||+||+|+.. ++..||||.+....               ..+.+.+|++++++++||||+++++++.....
T Consensus        41 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~  120 (504)
T 3q5i_A           41 VRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKY  120 (504)
T ss_dssp             EEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE
T ss_pred             EeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCE
Confidence            578999999999999965 57889999987531               23567889999999999999999999999999


Q ss_pred             EEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC---CeEEcc
Q 006559          402 LFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG---NACISD  478 (640)
Q Consensus       402 ~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~---~~kl~D  478 (640)
                      .|+|||||++|+|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++   .+||+|
T Consensus       121 ~~lv~e~~~gg~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~D  192 (504)
T 3q5i_A          121 FYLVTEFYEGGELFEQIINRH-----KFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKNSLLNIKIVD  192 (504)
T ss_dssp             EEEEEECCTTCBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESSTTCCSSEEECC
T ss_pred             EEEEEecCCCCcHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEecCCCCccEEEEE
Confidence            999999999999999987543     589999999999999999999954   599999999999999776   699999


Q ss_pred             CCcccccCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcc
Q 006559          479 IGVHQLFHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQD  553 (640)
Q Consensus       479 fGl~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~  553 (640)
                      ||+++....     ...+|..|+|||++.        ..++.++||||+||++|||++|+.||.....  ..........
T Consensus       193 fg~a~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~i~~~  262 (504)
T 3q5i_A          193 FGLSSFFSKDYKLRDRLGTAYYIAPEVLK--------KKYNEKCDVWSCGVIMYILLCGYPPFGGQND--QDIIKKVEKG  262 (504)
T ss_dssp             CTTCEECCTTSCBCCCCSCTTTCCHHHHT--------TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHC
T ss_pred             CCCCEEcCCCCccccccCCcCCCCHHHhc--------cCCCchHHHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHcC
Confidence            999987643     245688999999752        3577899999999999999999999975432  2222222111


Q ss_pred             cccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          554 ESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       554 ~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ...   ++.     +.......++.+++..||+.||++|||+.|+++
T Consensus       263 ~~~---~~~-----~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~  301 (504)
T 3q5i_A          263 KYY---FDF-----NDWKNISDEAKELIKLMLTYDYNKRCTAEEALN  301 (504)
T ss_dssp             CCC---CCH-----HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CCC---CCc-----cccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence            100   000     011112235677788899999999999999974

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=1.3e-36  Score=334.46  Aligned_cols=235  Identities=18%  Similarity=0.261  Sum_probs=186.4

Q ss_pred             ccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          339 ELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ++||+|+||.||+|+.. +|+.||||++...     ...+.+..|++++++++||||+++++++...+..|+||||+++|
T Consensus       191 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmE~~~gg  270 (543)
T 3c4z_A          191 RVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVMTIMNGG  270 (543)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTC
T ss_pred             EEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEEEeccCC
Confidence            56999999999999975 6899999999754     22356778999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      +|.+++..... ....+++.....++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++....     
T Consensus       271 ~L~~~l~~~~~-~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~~~~  346 (543)
T 3c4z_A          271 DIRYHIYNVDE-DNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKT  346 (543)
T ss_dssp             BHHHHHHTSST-TSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCCB
T ss_pred             CHHHHHHHhhc-ccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeecceeeeccCCCccc
Confidence            99999875432 123589999999999999999999954   599999999999999999999999999986542     


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc--chHHHHHHhhcccccccccchhh
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL--GIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                       ...+|..|+|||++.       ...++.++|||||||++|||+||+.||.....  ......+.....         ..
T Consensus       347 ~~~~GT~~Y~APE~l~-------~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~---------~~  410 (543)
T 3c4z_A          347 KGYAGTPGFMAPELLL-------GEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQ---------AV  410 (543)
T ss_dssp             CCCCSCTTTSCHHHHT-------TCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHC---------CC
T ss_pred             ccccCCccccChhhhc-------CCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhc---------cc
Confidence             236789999999753       34677899999999999999999999975321  122222221111         11


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMS  596 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~  596 (640)
                      ..+...+   ..+.+++..||+.||++||++.
T Consensus       411 ~~p~~~s---~~~~~li~~lL~~dP~~R~~~~  439 (543)
T 3c4z_A          411 TYPDKFS---PASKDFCEALLQKDPEKRLGFR  439 (543)
T ss_dssp             CCCTTSC---HHHHHHHHHHSCSSGGGSCCCB
T ss_pred             CCCcccC---HHHHHHHHHhccCCHhHCCCCc
Confidence            1111222   3456677789999999999763

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=5e-37  Score=315.24  Aligned_cols=243  Identities=16%  Similarity=0.296  Sum_probs=185.4

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      .+.||+|+||.||+|+.. ++..||+|.+...  ...+.+.+|++++++++||||+++++++...+..++||||+++|+|
T Consensus        24 ~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l  103 (302)
T 2j7t_A           24 VGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAV  103 (302)
T ss_dssp             EEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEECCTTEEH
T ss_pred             cceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEeCCCCcH
Confidence            567999999999999975 5889999998754  3456788899999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC------CC
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH------TP  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~------~~  488 (640)
                      .+++....    ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++....      ..
T Consensus       104 ~~~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~  176 (302)
T 2j7t_A          104 DAIMLELD----RGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDS  176 (302)
T ss_dssp             HHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHHC---
T ss_pred             HHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCCcccccccccccc
Confidence            99987532    2488999999999999999999954   59999999999999999999999999875421      23


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..++..|+|||++...  ......++.++|||||||++|||+||+.||.....  .............      ......
T Consensus       177 ~~~~~~y~aPE~~~~~--~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~~~~~------~~~~~~  246 (302)
T 2j7t_A          177 FIGTPYWMAPEVVMCE--TMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNP--MRVLLKIAKSDPP------TLLTPS  246 (302)
T ss_dssp             --CCGGGCCHHHHHHH--HTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHSCCC------CCSSGG
T ss_pred             ccCChhhcCCeeeccc--cCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCH--HHHHHHHhccCCc------ccCCcc
Confidence            4568899999975311  01244577899999999999999999999975332  1111111111100      000111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .   ....+.+++..||+.||++|||+.++++
T Consensus       247 ~---~~~~l~~li~~~l~~dp~~Rps~~~ll~  275 (302)
T 2j7t_A          247 K---WSVEFRDFLKIALDKNPETRPSAAQLLE  275 (302)
T ss_dssp             G---SCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred             c---cCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence            1   1234667788899999999999998864

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=5.2e-37  Score=312.37  Aligned_cols=237  Identities=17%  Similarity=0.267  Sum_probs=183.1

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc----cchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER----KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+.. +++.||||.+...    ....++.+|+..+.++ +||||+++++++...+..++||||+++
T Consensus        16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   95 (289)
T 1x8b_A           16 LEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQNEYCNG   95 (289)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred             hhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEEecCC
Confidence            578999999999999975 7899999998754    2345677788888888 999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC-------------------C
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL-------------------G  472 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~-------------------~  472 (640)
                      |+|.+++..... ....+++..+..++.|++.||+|||+.   +|+||||||+|||++.+                   .
T Consensus        96 ~~L~~~l~~~~~-~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~  171 (289)
T 1x8b_A           96 GSLADAISENYR-IMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKV  171 (289)
T ss_dssp             CBHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC--------------------CC
T ss_pred             CcHHHHHHhhcc-cccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCcccccccccccccCCce
Confidence            999999975321 012588999999999999999999954   59999999999999844                   4


Q ss_pred             CeEEccCCcccccCCC--ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHh
Q 006559          473 NACISDIGVHQLFHTP--FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMM  550 (640)
Q Consensus       473 ~~kl~DfGl~~~~~~~--~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~  550 (640)
                      .+||+|||++......  ..++..|+|||++..      ...++.++|||||||++|||++|+.++....    .+....
T Consensus       172 ~~kl~Dfg~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~~Di~slG~il~~l~~~~~~~~~~~----~~~~~~  241 (289)
T 1x8b_A          172 MFKIGDLGHVTRISSPQVEEGDSRFLANEVLQE------NYTHLPKADIFALALTVVCAAGAEPLPRNGD----QWHEIR  241 (289)
T ss_dssp             CEEECCCTTCEETTCSCCCCCCGGGCCHHHHTT------CCTTHHHHHHHHHHHHHHHHTTCCCCCSSSH----HHHHHH
T ss_pred             EEEEcccccccccCCccccCCCccccChhHhcC------CCCCCchhhHHHHHHHHHHHhcCCCCCcchh----HHHHHH
Confidence            7999999998876543  346889999997632      2245579999999999999999998764321    111111


Q ss_pred             hcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          551 GQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       551 ~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ...  .     +.  .+...   ...+.+++.+||+.||++|||+.++++
T Consensus       242 ~~~--~-----~~--~~~~~---~~~~~~li~~~l~~dp~~Rps~~~ll~  279 (289)
T 1x8b_A          242 QGR--L-----PR--IPQVL---SQEFTELLKVMIHPDPERRPSAMALVK  279 (289)
T ss_dssp             TTC--C-----CC--CSSCC---CHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             cCC--C-----CC--CCccc---CHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence            100  0     00  01111   234667788899999999999999864

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5e-37  Score=321.92  Aligned_cols=249  Identities=20%  Similarity=0.341  Sum_probs=185.6

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc-------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .+.||+|+||.||+|+.. +|+.||||++....       ..+.+.+|++++++++||||+++++++...+..++||||+
T Consensus        15 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   94 (346)
T 1ua2_A           15 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFM   94 (346)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECC
T ss_pred             EeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCceEEEEEcC
Confidence            568999999999999964 58899999987431       1245778999999999999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--  487 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--  487 (640)
                      ++ +|.+++....    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....  
T Consensus        95 ~~-~l~~~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~  166 (346)
T 1ua2_A           95 ET-DLEVIIKDNS----LVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPN  166 (346)
T ss_dssp             SE-EHHHHHTTCC----SSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCC
T ss_pred             CC-CHHHHHHhcC----cCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEEEEecccceeccCCc
Confidence            86 8988887543    2577888999999999999999954   599999999999999999999999999987642  


Q ss_pred             ----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-h-HHHHHHhhcc-ccccc-c
Q 006559          488 ----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-I-VKWVQMMGQD-ESAWE-V  559 (640)
Q Consensus       488 ----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~-~~~~~~~~~~-~~~~~-~  559 (640)
                          ...+|..|+|||++.+      ...++.++|||||||++|||++|+.||...... . ....+..... ...+. .
T Consensus       167 ~~~~~~~~t~~y~aPE~~~~------~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  240 (346)
T 1ua2_A          167 RAYTHQVVTRWYRAPELLFG------ARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDM  240 (346)
T ss_dssp             CCCCCSCCCCTTCCHHHHTT------CSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSST
T ss_pred             ccCCcccccccccCchHhhC------CCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhh
Confidence                2345889999997532      234678999999999999999999998754321 1 1111111111 00000 0


Q ss_pred             c---ch---h-hc-cC--hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 F---DF---E-LI-MD--KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 ~---d~---~-~~-~~--~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .   +.   . .. ..  ........++.+++..||+.||++|||+.|+++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  291 (346)
T 1ua2_A          241 CSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK  291 (346)
T ss_dssp             TSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             ccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhc
Confidence            0   00   0 00 00  000112245778888899999999999999876

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=7.7e-37  Score=320.52  Aligned_cols=251  Identities=14%  Similarity=0.206  Sum_probs=190.5

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccccc-----h--------------HHHHHHHHHHhccCCCcccceeEEEE
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERKK-----K--------------REVDEWLRVIGGLRHSNIVSIRAYCN  397 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~-----~--------------~~~~~e~~~l~~l~H~niv~l~~~~~  397 (640)
                      ..+.||+|+||.||+|+. ++..||||.+.....     .              +.+.+|++++++++||||+++++++.
T Consensus        35 ~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~  113 (348)
T 2pml_X           35 IIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCEGIIT  113 (348)
T ss_dssp             EEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCSEEEE
T ss_pred             EEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEEEEEe
Confidence            356899999999999999 899999999875411     1              77899999999999999999999999


Q ss_pred             cCCeEEEEEeccCCCCHHHh------hccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC
Q 006559          398 GKDELFLVYDYLPHGSLHSL------LHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL  471 (640)
Q Consensus       398 ~~~~~~lV~Ey~~~gsL~~~------l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~  471 (640)
                      ..+..++||||+++|+|.++      +....   ...+++..+..++.|++.||+|||+  ..+|+||||||+||+++.+
T Consensus       114 ~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~---~~~~~~~~~~~i~~qi~~~l~~lH~--~~~i~H~dl~p~Nil~~~~  188 (348)
T 2pml_X          114 NYDEVYIIYEYMENDSILKFDEYFFVLDKNY---TCFIPIQVIKCIIKSVLNSFSYIHN--EKNICHRDVKPSNILMDKN  188 (348)
T ss_dssp             SSSEEEEEEECCTTCBSSEESSSEESSCSSS---CCCCCHHHHHHHHHHHHHHHHHHHH--TSCEECCCCCGGGEEECTT
T ss_pred             eCCeEEEEEeccCCCcHHHHHHHhhhhhhcc---ccCCCHHHHHHHHHHHHHHHHHHhc--cCCEeecCCChHhEEEcCC
Confidence            99999999999999999998      54321   2368999999999999999999995  1569999999999999999


Q ss_pred             CCeEEccCCcccccCC----CccccccccCCccccCCCCccccCCCCC-ccchHHHHHHHHHHHhCCCCCCCCCcchHHH
Q 006559          472 GNACISDIGVHQLFHT----PFFINDAYNAPELKFNNNNNYSQRKFWQ-RCDVYSFGVVLLEILTGKMAKGDGELGIVKW  546 (640)
Q Consensus       472 ~~~kl~DfGl~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~~~~~~-k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~  546 (640)
                      +.+||+|||+++....    ...++..|+|||++...      ..++. ++|||||||++|||+||+.||...... ...
T Consensus       189 ~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~  261 (348)
T 2pml_X          189 GRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNE------SSYNGAKVDIWSLGICLYVMFYNVVPFSLKISL-VEL  261 (348)
T ss_dssp             SCEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSC------CCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCS-HHH
T ss_pred             CcEEEeccccccccccccccCCCCCcCccCchhhcCC------CCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcH-HHH
Confidence            9999999999987543    34568899999975322      13444 899999999999999999999754331 112


Q ss_pred             HHHhhcccccccc----cchhhccC---hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          547 VQMMGQDESAWEV----FDFELIMD---KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       547 ~~~~~~~~~~~~~----~d~~~~~~---~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .+...........    ........   ........++.+++.+||+.||++||++.|+++
T Consensus       262 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~  322 (348)
T 2pml_X          262 FNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK  322 (348)
T ss_dssp             HHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             HHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            2222111100000    00000000   000122345777888899999999999999975

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=4.9e-37  Score=348.43  Aligned_cols=229  Identities=20%  Similarity=0.279  Sum_probs=184.3

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      .++||+|+||.||+|+.. +++.||||+++..     ...+.+..|.+++..+ +||||+++++++.+.+.+|+||||++
T Consensus       346 ~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~lV~E~~~  425 (674)
T 3pfq_A          346 LMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVN  425 (674)
T ss_dssp             EEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEEEEECCC
T ss_pred             EEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEEEEeCcC
Confidence            568999999999999965 5788999999753     2335567788888887 79999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC----
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH----  486 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~----  486 (640)
                      +|+|.+++....     .+++..+..++.||+.||+|||+.   +||||||||+||||+.++.+||+|||+++...    
T Consensus       426 gg~L~~~l~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~  497 (674)
T 3pfq_A          426 GGDLMYHIQQVG-----RFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGV  497 (674)
T ss_dssp             SCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEECCCTTCEECCCTTC
T ss_pred             CCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEeecceeeccccCCc
Confidence            999999998643     589999999999999999999954   59999999999999999999999999998632    


Q ss_pred             --CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          487 --TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       487 --~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                        ....+|..|+|||++       ....++.++|||||||++|||+||+.||.....  .+..+.....         ..
T Consensus       498 ~~~~~~GT~~Y~APE~l-------~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~--~~~~~~i~~~---------~~  559 (674)
T 3pfq_A          498 TTKTFCGTPDYIAPEII-------AYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE--DELFQSIMEH---------NV  559 (674)
T ss_dssp             CBCCCCSCSSSCCHHHH-------TCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHSS---------CC
T ss_pred             ccccccCCCcccCHhhh-------cCCCCCccceEechHHHHHHHHcCCCCCCCCCH--HHHHHHHHhC---------CC
Confidence              234578999999975       345678899999999999999999999975432  2222222211         11


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNM  595 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~  595 (640)
                      ..+.....   ++.+++..||+.||++||++
T Consensus       560 ~~p~~~s~---~~~~li~~lL~~dP~~R~~~  587 (674)
T 3pfq_A          560 AYPKSMSK---EAVAICKGLMTKHPGKRLGC  587 (674)
T ss_dssp             CCCTTSCH---HHHHHHHHHSCSSSTTCTTC
T ss_pred             CCCccCCH---HHHHHHHHHccCCHHHCCCC
Confidence            11222223   45667778999999999997

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=1.8e-37  Score=316.77  Aligned_cols=245  Identities=21%  Similarity=0.305  Sum_probs=183.1

Q ss_pred             hhccccccCcceEEEEEeC--CCc--EEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVLD--GGD--VVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~--~~~--~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||.||+|++.  ++.  .||||.++..     ...+.+.+|++++++++||||+++++++.... .++|||
T Consensus        22 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~~v~e  100 (291)
T 1u46_A           22 LLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MKMVTE  100 (291)
T ss_dssp             EEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CEEEEE
T ss_pred             eeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ceeeEe
Confidence            3578999999999999853  333  5899988743     23456788999999999999999999998654 899999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      |+++|+|.+++....    ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus       101 ~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~  173 (291)
T 1u46_A          101 LAPLGSLLDRLRKHQ----GHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQ  173 (291)
T ss_dssp             CCTTCBHHHHHHHHG----GGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEECCC
T ss_pred             cccCCCHHHHHHhcc----CCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEEccccccccccc
Confidence            999999999997542    2588999999999999999999954   599999999999999999999999999877542


Q ss_pred             C---------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccc
Q 006559          488 P---------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAW  557 (640)
Q Consensus       488 ~---------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  557 (640)
                      .         ...+..|+|||++       ....++.++|||||||++|||+| |+.||.....  ............. 
T Consensus       174 ~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--~~~~~~~~~~~~~-  243 (291)
T 1u46_A          174 NDDHYVMQEHRKVPFAWCAPESL-------KTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG--SQILHKIDKEGER-  243 (291)
T ss_dssp             -CCEEEC-----CCGGGCCHHHH-------HHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCH--HHHHHHHHTSCCC-
T ss_pred             cccchhhhccCCCCceeeCchhh-------cCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCH--HHHHHHHHccCCC-
Confidence            2         2235679999965       33456789999999999999999 9999975432  2222222111100 


Q ss_pred             cccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       558 ~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                            .....   ....++.+++..||+.||++||++.++++.|+++...
T Consensus       244 ------~~~~~---~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  285 (291)
T 1u46_A          244 ------LPRPE---DCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT  285 (291)
T ss_dssp             ------CCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred             ------CCCCc---CcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence                  00111   1223567788889999999999999999999998754

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=1.7e-36  Score=319.77  Aligned_cols=249  Identities=20%  Similarity=0.266  Sum_probs=180.7

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccccc-------------hHHHHHHHHHHhccCCCcccceeEEEEc-----C
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERKK-------------KREVDEWLRVIGGLRHSNIVSIRAYCNG-----K  399 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~-------------~~~~~~e~~~l~~l~H~niv~l~~~~~~-----~  399 (640)
                      .+.||+|+||.||+|+..+|..||||++.....             .+.+.+|++++++++||||+++++++..     .
T Consensus        27 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  106 (362)
T 3pg1_A           27 QRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDIFVHFEEPAM  106 (362)
T ss_dssp             EEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEEEECCTTTC
T ss_pred             eEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceeeeEEeccCCCc
Confidence            568999999999999988899999999864311             2668899999999999999999999853     3


Q ss_pred             CeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccC
Q 006559          400 DELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDI  479 (640)
Q Consensus       400 ~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~Df  479 (640)
                      ...|+||||++ |+|.+++....    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+||
T Consensus       107 ~~~~lv~e~~~-~~l~~~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Df  178 (362)
T 3pg1_A          107 HKLYLVTELMR-TDLAQVIHDQR----IVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPGNILLADNNDITICDF  178 (362)
T ss_dssp             CEEEEEEECCS-EEHHHHHHCTT----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCT
T ss_pred             ceEEEEEccCC-CCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChHHEEEcCCCCEEEEec
Confidence            46899999998 68888887543    2589999999999999999999954   5999999999999999999999999


Q ss_pred             CcccccCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hH-HHHHHhhc
Q 006559          480 GVHQLFHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IV-KWVQMMGQ  552 (640)
Q Consensus       480 Gl~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~-~~~~~~~~  552 (640)
                      |+++....     ...++..|+|||++..      ...++.++|||||||++|||+||+.||...... .. ..+.....
T Consensus       179 g~~~~~~~~~~~~~~~~t~~y~aPE~~~~------~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~  252 (362)
T 3pg1_A          179 NLAREDTADANKTHYVTHRWYRAPELVMQ------FKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGT  252 (362)
T ss_dssp             TC---------------CGGGCCHHHHTT------CTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCC
T ss_pred             CcccccccccccceecccceecCcHHhcC------CCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCC
Confidence            99975432     2345788999997532      245778999999999999999999999754321 11 11111111


Q ss_pred             ccccc----------cccchhh---cc---ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          553 DESAW----------EVFDFEL---IM---DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       553 ~~~~~----------~~~d~~~---~~---~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .....          .......   ..   ..........+.+++..||+.||++|||+.|+++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  316 (362)
T 3pg1_A          253 PKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR  316 (362)
T ss_dssp             CCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence            00000          0000000   00   0000111245778888999999999999999875

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=1.2e-37  Score=329.95  Aligned_cols=250  Identities=14%  Similarity=0.042  Sum_probs=170.4

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc-----chHHHHHHH---HHHhccCCCccccee-------EEEEcC-
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----KKREVDEWL---RVIGGLRHSNIVSIR-------AYCNGK-  399 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----~~~~~~~e~---~~l~~l~H~niv~l~-------~~~~~~-  399 (640)
                      ..+.||+|+||.||+|+.. +++.||||++....     ..+.+.+|+   +.++. +||||++++       +++... 
T Consensus        66 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~~~~~~  144 (371)
T 3q60_A           66 LVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDAVAVQS  144 (371)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEEEEETT
T ss_pred             eeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehheecCC
Confidence            3578999999999999964 68899999998642     234456674   55556 799987754       455432 


Q ss_pred             ----------------CeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHH------HHHHHHHHHHHHHhhcCCCCCce
Q 006559          400 ----------------DELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKR------LKLASDSAKGLAFLHGYNKAHLF  457 (640)
Q Consensus       400 ----------------~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~------~~i~~~ia~gL~yLH~~~~~~iv  457 (640)
                                      ...|+|||||+ |+|.+++.....    .+.+..+      ..++.|++.||+|||+.   +|+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~----~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~---~iv  216 (371)
T 3q60_A          145 QPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF----VYVFRGDEGILALHILTAQLIRLAANLQSK---GLV  216 (371)
T ss_dssp             SCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH----SCCCCHHHHHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred             CCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc----ccchhhhhhhhhHHHHHHHHHHHHHHHHHC---CCc
Confidence                            34899999999 899999975421    2344455      77889999999999954   599


Q ss_pred             ecCCCCCCeEECCCCCeEEccCCcccccCCC---ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCC
Q 006559          458 HGHLSSSNIVVDQLGNACISDIGVHQLFHTP---FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM  534 (640)
Q Consensus       458 Hrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~  534 (640)
                      ||||||+|||++.++.+||+|||+++.....   ...+..|+|||++..     ....++.++|||||||++|||+||+.
T Consensus       217 HrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~-----~~~~~~~~~DiwSlG~il~elltg~~  291 (371)
T 3q60_A          217 HGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNA-----STATFTHALNAWQLGLSIYRVWCLFL  291 (371)
T ss_dssp             ETTCSGGGEEECTTSCEEECCGGGEEETTCEEEGGGSCGGGCCHHHHTC-----SEEECCHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCcCCHHHEEECCCCCEEEEecceeeecCCCccCccCCcCCcChhhccC-----CCCCcCccccHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999876542   345789999997521     12457889999999999999999999


Q ss_pred             CCCCCCcchHH-HHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhh
Q 006559          535 AKGDGELGIVK-WVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDIR  606 (640)
Q Consensus       535 p~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i~  606 (640)
                      ||......... |...     ............+ ........+.+++.+||+.||++|||+.++++  .++++.
T Consensus       292 Pf~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~  360 (371)
T 3q60_A          292 PFGLVTPGIKGSWKRP-----SLRVPGTDSLAFG-SCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQLQ  360 (371)
T ss_dssp             STTBCCTTCTTCCCBC-----CTTSCCCCSCCCT-TSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHHHH
T ss_pred             CCCCcCcccccchhhh-----hhhhccccccchh-hccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHHHH
Confidence            99754221110 0000     0000000011000 00112335667888899999999999999964  444443

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=9.7e-37  Score=322.04  Aligned_cols=248  Identities=17%  Similarity=0.303  Sum_probs=186.1

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcC-----CeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGK-----DELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~-----~~~~lV~E  407 (640)
                      ..+.||+|+||.||+|+.. ++..||||++....   ..+.+.+|++++++++||||+++++++...     ...|+|||
T Consensus        31 ~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~iv~e  110 (364)
T 3qyz_A           31 NLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQD  110 (364)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEE
T ss_pred             EEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceEEEEEc
Confidence            3578999999999999854 67889999997542   235678899999999999999999999764     36899999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      |++ |+|.+++...      .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....
T Consensus       111 ~~~-~~L~~~l~~~------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~  180 (364)
T 3qyz_A          111 LME-TDLYKLLKTQ------HLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVADP  180 (364)
T ss_dssp             CCS-EEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCG
T ss_pred             ccC-cCHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCcceEecCC
Confidence            997 5999998753      488999999999999999999954   599999999999999999999999999976542


Q ss_pred             ---------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHHHH-HHhhcccc-
Q 006559          488 ---------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVKWV-QMMGQDES-  555 (640)
Q Consensus       488 ---------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~~~-~~~~~~~~-  555 (640)
                               ...+|..|+|||++.      ....++.++|||||||++|||+||+.||..... .....+ ........ 
T Consensus       181 ~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~  254 (364)
T 3qyz_A          181 DHDHTGFLTEYVATRWYRAPEIML------NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE  254 (364)
T ss_dssp             GGCBCCTTCCCCSCGGGCCHHHHH------TBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHH
T ss_pred             CCCccccccccccccCCCCCHHhc------CCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHH
Confidence                     235688999999752      234467899999999999999999999975432 221111 11111100 


Q ss_pred             -cccccch-------hhc----c--ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          556 -AWEVFDF-------ELI----M--DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       556 -~~~~~d~-------~~~----~--~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       .....+.       ...    .  .........++.+++.+||+.||++|||+.|+++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  313 (364)
T 3qyz_A          255 DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA  313 (364)
T ss_dssp             HHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence             0000000       000    0  0000112245778888999999999999999875

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=1.4e-36  Score=321.71  Aligned_cols=244  Identities=17%  Similarity=0.259  Sum_probs=179.1

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCC------eEEEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKD------ELFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~------~~~lV~  406 (640)
                      .+.||+|+||.||+|+. .+++.||||++...    ...+.+.+|+.+++.++||||+++++++...+      ..|+||
T Consensus        30 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~lv~  109 (371)
T 2xrw_A           30 LKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVM  109 (371)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCEEEEEE
T ss_pred             eeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccceEEEE
Confidence            56899999999999985 46888999998753    22355778999999999999999999997654      789999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||++ |+|.+++..       .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus       110 e~~~-~~l~~~~~~-------~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~  178 (371)
T 2xrw_A          110 ELMD-ANLCQVIQM-------ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  178 (371)
T ss_dssp             ECCS-EEHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCC-----
T ss_pred             EcCC-CCHHHHHhh-------ccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEeecccccc
Confidence            9997 578888863       378899999999999999999954   59999999999999999999999999998764


Q ss_pred             C-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccc----cc
Q 006559          487 T-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDES----AW  557 (640)
Q Consensus       487 ~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~----~~  557 (640)
                      .     ...+|..|+|||++.       ...++.++|||||||++|||+||+.||..... ...+.........    ..
T Consensus       179 ~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-~~~~~~i~~~~~~~~~~~~  250 (371)
T 2xrw_A          179 TSFMMTPYVVTRYYRAPEVIL-------GMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH-IDQWNKVIEQLGTPCPEFM  250 (371)
T ss_dssp             -----------CTTCCHHHHT-------TCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHC-CCCCCHHHH
T ss_pred             cccccCCceecCCccCHHHhc-------CCCCCchHhHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHHH
Confidence            3     245688999999753       34577899999999999999999999975432 1112111110000    00


Q ss_pred             ccc-----------------c-----hhh--cc-ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          558 EVF-----------------D-----FEL--IM-DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       558 ~~~-----------------d-----~~~--~~-~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ...                 .     +..  .. .........++.+++.+||+.||++|||+.|+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~  318 (371)
T 2xrw_A          251 KKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ  318 (371)
T ss_dssp             TTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             HHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence            000                 0     000  00 0111223456888999999999999999999975

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=9.5e-37  Score=316.82  Aligned_cols=244  Identities=18%  Similarity=0.320  Sum_probs=184.1

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc-cchHHHHHHHHHHhcc-CCCcccceeEEEEc------CCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER-KKKREVDEWLRVIGGL-RHSNIVSIRAYCNG------KDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~------~~~~~lV~E  407 (640)
                      ..+.||+|+||.||+|+. .+++.||||.+... ...+.+.+|+.+++++ +||||+++++++..      .+..++|||
T Consensus        28 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e  107 (326)
T 2x7f_A           28 LVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVME  107 (326)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCEEEEEEE
T ss_pred             EEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccceEEEEEE
Confidence            357899999999999996 46889999998755 3456788999999998 79999999999976      468999999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      |+++|+|.+++....   ...+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++.....
T Consensus       108 ~~~~~~L~~~l~~~~---~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~  181 (326)
T 2x7f_A          108 FCGAGSVTDLIKNTK---GNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDR  181 (326)
T ss_dssp             CCTTEEHHHHHHHSG---GGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCTTTC----
T ss_pred             cCCCCcHHHHHHhcc---cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCCCEEEeeCcCceecCc
Confidence            999999999997542   12588899999999999999999954   599999999999999999999999999876542


Q ss_pred             ------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccc
Q 006559          488 ------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFD  561 (640)
Q Consensus       488 ------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  561 (640)
                            ...++..|+|||++....  .....++.++|||||||++|||+||+.||.........+  .......      
T Consensus       182 ~~~~~~~~~~~~~y~aPE~~~~~~--~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~--~~~~~~~------  251 (326)
T 2x7f_A          182 TVGRRNTFIGTPYWMAPEVIACDE--NPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALF--LIPRNPA------  251 (326)
T ss_dssp             ---------CCGGGCCHHHHC----------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH--HHHHSCC------
T ss_pred             CccccccccCCccccChhhhcccc--ccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHH--HhhcCcc------
Confidence                  234688999999764221  113457789999999999999999999997533211111  1111100      


Q ss_pred             hhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       562 ~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      +.. .....   ...+.+++..||+.||++||++.++++
T Consensus       252 ~~~-~~~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~  286 (326)
T 2x7f_A          252 PRL-KSKKW---SKKFQSFIESCLVKNHSQRPATEQLMK  286 (326)
T ss_dssp             CCC-SCSCS---CHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             ccC-Ccccc---CHHHHHHHHHHhccChhhCCCHHHHhh
Confidence            000 00111   234667788899999999999999975

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=5.9e-37  Score=346.73  Aligned_cols=244  Identities=19%  Similarity=0.288  Sum_probs=191.5

Q ss_pred             hhccccccCcceEEEEEeCC----CcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLDG----GDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~----~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ..+.||+|+||.||+|+...    +..||||.++...   ..+.+.+|+.++++++||||+++++++. .+..|+||||+
T Consensus       394 i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~lv~E~~  472 (656)
T 2j0j_A          394 LGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELC  472 (656)
T ss_dssp             EEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECC
T ss_pred             EeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceEEEEEcC
Confidence            35679999999999998643    4569999987542   2366888999999999999999999985 46789999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-  488 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-  488 (640)
                      ++|+|.+++....    ..+++..++.++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++..... 
T Consensus       473 ~~g~L~~~l~~~~----~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~  545 (656)
T 2j0j_A          473 TLGELRSFLQVRK----FSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST  545 (656)
T ss_dssp             TTCBHHHHHHHTT----TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC--
T ss_pred             CCCcHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEEecCCCeecCCCc
Confidence            9999999997543    2588999999999999999999954   5999999999999999999999999999876432 


Q ss_pred             ------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccc
Q 006559          489 ------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFD  561 (640)
Q Consensus       489 ------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  561 (640)
                            ..++..|+|||++       ....++.++|||||||++|||++ |+.||.+....  ...........      
T Consensus       546 ~~~~~~~~~t~~y~aPE~~-------~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~--~~~~~i~~~~~------  610 (656)
T 2j0j_A          546 YYKASKGKLPIKWMAPESI-------NFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN--DVIGRIENGER------  610 (656)
T ss_dssp             --------CCGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHHTCC------
T ss_pred             ceeccCCCCCcceeCHHHh-------cCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHH--HHHHHHHcCCC------
Confidence                  2235689999964       34567889999999999999997 99999753321  11111111100      


Q ss_pred             hhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       562 ~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                        ...+.   .....+.+++..||+.||++||++.++++.|+++..+
T Consensus       611 --~~~~~---~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~  652 (656)
T 2j0j_A          611 --LPMPP---NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE  652 (656)
T ss_dssp             --CCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             --CCCCc---cccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence              00111   1223567788889999999999999999999998643

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=1.5e-36  Score=320.47  Aligned_cols=247  Identities=18%  Similarity=0.281  Sum_probs=170.2

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcC------CeEEEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGK------DELFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------~~~~lV~  406 (640)
                      .+.||+|+||.||+|+. .+|+.||||++...    ...+.+.+|+++++.++||||+++++++...      ...|+|+
T Consensus        34 ~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~~~lv~  113 (367)
T 2fst_X           34 LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVT  113 (367)
T ss_dssp             EEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEE
T ss_pred             eeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCeEEEEe
Confidence            56899999999999985 56889999998653    2345677899999999999999999999754      5689999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||+ +++|.+++...      .+++..+..++.|+++||+|||+   .+|+||||||+|||++.++.+||+|||+++...
T Consensus       114 e~~-~~~L~~~~~~~------~l~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~  183 (367)
T 2fst_X          114 HLM-GADLNNIVKCQ------KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTA  183 (367)
T ss_dssp             ECC-CEECC-----C------CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECC--------
T ss_pred             ccc-CCCHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHhhEEECCCCCEEEeecccccccc
Confidence            999 68999988642      48899999999999999999995   459999999999999999999999999998764


Q ss_pred             C---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHH-HHHHhhcccc-cc-cc
Q 006559          487 T---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVK-WVQMMGQDES-AW-EV  559 (640)
Q Consensus       487 ~---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~-~~~~~~~~~~-~~-~~  559 (640)
                      .   ...+|..|+|||++.+      ...++.++|||||||++|||+||+.||.+... .... ..+..+.... .. .+
T Consensus       184 ~~~~~~~~t~~y~aPE~~~~------~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~  257 (367)
T 2fst_X          184 DEMTGYVATRWYRAPEIMLN------WMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKI  257 (367)
T ss_dssp             -------CCCTTCCHHHHTT------CCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHTTC
T ss_pred             ccCCCcCcCcCccChHHHcC------CcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHh
Confidence            3   3456889999997532      24577899999999999999999999975432 1111 1111111100 00 00


Q ss_pred             cch-------hhc--cChHH----HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 FDF-------ELI--MDKEM----EEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 ~d~-------~~~--~~~~~----~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ...       .+.  .....    ......+.+++.+||..||++|||+.++++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~  311 (367)
T 2fst_X          258 SSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  311 (367)
T ss_dssp             CCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence            000       000  00000    011235678888999999999999999875

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=2.9e-36  Score=311.91  Aligned_cols=245  Identities=19%  Similarity=0.289  Sum_probs=177.6

Q ss_pred             hccccccCcceEEEEEeCC-CcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEE--------------cCC
Q 006559          338 AELLGKGCVGATYKVVLDG-GDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCN--------------GKD  400 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~--------------~~~  400 (640)
                      .+.||+|+||.||+|+... ++.||||++...  ...+.+.+|++++++++||||+++++++.              ...
T Consensus        16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~   95 (320)
T 2i6l_A           16 LKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELN   95 (320)
T ss_dssp             EEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----CCSCS
T ss_pred             EEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccccccccC
Confidence            5679999999999999764 889999998754  23466788999999999999999999874              346


Q ss_pred             eEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC-CCCCeEEccC
Q 006559          401 ELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDI  479 (640)
Q Consensus       401 ~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~-~~~~~kl~Df  479 (640)
                      ..++||||++ |+|.+++...      ++++..+..++.|++.||+|||+.   +|+||||||+|||++ +++.+||+||
T Consensus        96 ~~~lv~e~~~-~~L~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl~Df  165 (320)
T 2i6l_A           96 SVYIVQEYME-TDLANVLEQG------PLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDLVLKIGDF  165 (320)
T ss_dssp             EEEEEEECCS-EEHHHHHTTC------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTTEEEECCC
T ss_pred             ceeEEeeccC-CCHHHHhhcC------CccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCeEEEccC
Confidence            7899999998 6999999643      478899999999999999999954   599999999999997 5679999999


Q ss_pred             CcccccCC---------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHh
Q 006559          480 GVHQLFHT---------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMM  550 (640)
Q Consensus       480 Gl~~~~~~---------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~  550 (640)
                      |+++....         ...++..|+|||++.      ....++.++|||||||++|||+||+.||......  ...+..
T Consensus       166 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~------~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~--~~~~~~  237 (320)
T 2i6l_A          166 GLARIMDPHYSHKGHLSEGLVTKWYRSPRLLL------SPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHEL--EQMQLI  237 (320)
T ss_dssp             TTCBCC--------CCCGGGSCCTTCCHHHHH------CTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHH
T ss_pred             ccccccCCCcccccccccccccccccCcHHhc------CcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHH--HHHHHH
Confidence            99986532         123477899999753      2245778999999999999999999999754321  111111


Q ss_pred             hcc-ccc-----ccc-------cchhhccC-----hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          551 GQD-ESA-----WEV-------FDFELIMD-----KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       551 ~~~-~~~-----~~~-------~d~~~~~~-----~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ... ...     .+.       ........     ........++.+++.+||+.||++|||+.|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (320)
T 2i6l_A          238 LESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS  305 (320)
T ss_dssp             HHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             HHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence            100 000     000       00000000     000112345778889999999999999999965

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=1.9e-36  Score=310.66  Aligned_cols=238  Identities=21%  Similarity=0.357  Sum_probs=179.6

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEc-------------CCeE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNG-------------KDEL  402 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~-------------~~~~  402 (640)
                      .+.||+|+||.||+|+. .+++.||||.+... ...+.+.+|++++++++||||+++++++..             .+..
T Consensus        11 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (303)
T 1zy4_A           11 IAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTL   90 (303)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC------CEEEE
T ss_pred             hheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcccccCCce
Confidence            56899999999999996 47889999999754 334668889999999999999999998864             3578


Q ss_pred             EEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcc
Q 006559          403 FLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVH  482 (640)
Q Consensus       403 ~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~  482 (640)
                      |+||||+++|+|.+++....    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||++
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~  163 (303)
T 1zy4_A           91 FIQMEYCENGTLYDLIHSEN----LNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVKIGDFGLA  163 (303)
T ss_dssp             EEEEECCCSCBHHHHHHHSC----GGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCCC
T ss_pred             EEEEecCCCCCHHHhhhccc----cccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCCEEEeeCcch
Confidence            99999999999999997543    2578889999999999999999954   5999999999999999999999999998


Q ss_pred             cccCC--------------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc
Q 006559          483 QLFHT--------------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG  542 (640)
Q Consensus       483 ~~~~~--------------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~  542 (640)
                      +....                    ...++..|+|||++.+      ...++.++|||||||++|||++   ||.... .
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~~Di~slG~il~~l~~---p~~~~~-~  233 (303)
T 1zy4_A          164 KNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDG------TGHYNEKIDMYSLGIIFFEMIY---PFSTGM-E  233 (303)
T ss_dssp             SCTTC-------------------------CTTSCHHHHTS------CSCCCTHHHHHHHHHHHHHHHS---CCSSHH-H
T ss_pred             hhcccccchhccccccccccccccccCCCcccccCcccccC------CCCCcchhhHHHHHHHHHHHHh---ccCCch-h
Confidence            76531                    1235778999997532      2357789999999999999998   553211 1


Q ss_pred             hHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          543 IVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .....+.......   .+...  ..   ......+.+++.+||+.||++|||+.++++
T Consensus       234 ~~~~~~~~~~~~~---~~~~~--~~---~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  283 (303)
T 1zy4_A          234 RVNILKKLRSVSI---EFPPD--FD---DNKMKVEKKIIRLLIDHDPNKRPGARTLLN  283 (303)
T ss_dssp             HHHHHHHHHSTTC---CCCTT--CC---TTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHhcccccc---ccCcc--cc---ccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence            1111111111100   00000  11   122234667888899999999999999975

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=3.2e-36  Score=314.01  Aligned_cols=250  Identities=20%  Similarity=0.276  Sum_probs=188.1

Q ss_pred             hhccccccCcceEEEEEe--CCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCc------ccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVL--DGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSN------IVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~--~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~n------iv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||.||+|..  .++..||||+++.. ...+.+.+|+++++.++|+|      ++++++++...+..++|||
T Consensus        18 ~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~lv~e   97 (339)
T 1z57_A           18 IVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFE   97 (339)
T ss_dssp             EEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEEEEEEE
T ss_pred             EEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcEEEEEc
Confidence            356799999999999986  36788999999765 33456778888888887665      9999999999999999999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC-----------------
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ-----------------  470 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~-----------------  470 (640)
                      |+ +++|.+++....   ..++++..+..++.|++.||+|||+.   +|+||||||+|||++.                 
T Consensus        98 ~~-~~~l~~~l~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~  170 (339)
T 1z57_A           98 LL-GLSTYDFIKENG---FLPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEAYNPKIKRDERT  170 (339)
T ss_dssp             CC-CCBHHHHHHHTT---TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEEEEC----CEEEE
T ss_pred             CC-CCCHHHHHHhcC---CCCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccccccccCCcccccccc
Confidence            99 889999997653   23588999999999999999999954   5999999999999987                 


Q ss_pred             --CCCeEEccCCcccccCC---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcch-H
Q 006559          471 --LGNACISDIGVHQLFHT---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGI-V  544 (640)
Q Consensus       471 --~~~~kl~DfGl~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~-~  544 (640)
                        ++.+||+|||+++....   ...+|..|+|||++.       ...++.++|||||||++|||+||+.||....... .
T Consensus       171 ~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~  243 (339)
T 1z57_A          171 LINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVIL-------ALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHL  243 (339)
T ss_dssp             ESCCCEEECCCSSCEETTSCCCSSCSCGGGCCHHHHT-------TSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHH
T ss_pred             ccCCCceEeeCcccccCccccccccCCccccChHHhh-------CCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHH
Confidence              67899999999987543   345688999999753       3457789999999999999999999997543221 1


Q ss_pred             HHHHHhhc-ccc-c----------------cccc-----------chhhccChHHHHHHHHHHHHHHHccCCCCCCCCCH
Q 006559          545 KWVQMMGQ-DES-A----------------WEVF-----------DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNM  595 (640)
Q Consensus       545 ~~~~~~~~-~~~-~----------------~~~~-----------d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~  595 (640)
                      ..+..... ... .                |...           .+.............++.+++.+||+.||++|||+
T Consensus       244 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~  323 (339)
T 1z57_A          244 AMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITL  323 (339)
T ss_dssp             HHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCH
T ss_pred             HHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCH
Confidence            11111110 000 0                0000           00000000011334568889999999999999999


Q ss_pred             HHHHH
Q 006559          596 SIVHR  600 (640)
Q Consensus       596 ~~v~~  600 (640)
                      .|+++
T Consensus       324 ~ell~  328 (339)
T 1z57_A          324 REALK  328 (339)
T ss_dssp             HHHTT
T ss_pred             HHHhc
Confidence            99874

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=1e-36  Score=325.23  Aligned_cols=257  Identities=18%  Similarity=0.327  Sum_probs=183.2

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcCC------eEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGKD------ELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~------~~~lV~Ey~~  410 (640)
                      ..++||+|+||.||+|+...+..||+|++.....  ...+|+++++.++||||+++++++...+      ..++||||++
T Consensus        44 ~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~--~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~~  121 (394)
T 4e7w_A           44 NCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR--FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVP  121 (394)
T ss_dssp             EEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT--SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEECCS
T ss_pred             EeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc--hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEeeccC
Confidence            3578999999999999987777799998865421  2236889999999999999999996543      3889999998


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC-CCCCeEEccCCcccccCC--
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIGVHQLFHT--  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~-~~~~~kl~DfGl~~~~~~--  487 (640)
                      ++.+........  ....+++..+..++.|+++||+|||+.   +|+||||||+|||++ .++.+||+|||+++....  
T Consensus       122 ~~l~~~~~~~~~--~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~  196 (394)
T 4e7w_A          122 ETVYRASRHYAK--LKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGE  196 (394)
T ss_dssp             EEHHHHHHHHHH--TTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTC
T ss_pred             ccHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCC
Confidence            754443332111  112588999999999999999999954   599999999999999 799999999999987532  


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc--hHHHHHHhhccccc-ccccc
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG--IVKWVQMMGQDESA-WEVFD  561 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~--~~~~~~~~~~~~~~-~~~~d  561 (640)
                         ...+|..|+|||++.+      ...++.++|||||||++|||++|+.||.+....  +...++..+..... ....+
T Consensus       197 ~~~~~~~t~~y~aPE~~~~------~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~  270 (394)
T 4e7w_A          197 PNVSYICSRYYRAPELIFG------ATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMN  270 (394)
T ss_dssp             CCCSSCSCGGGCCHHHHTT------CSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHC
T ss_pred             CCcccccCcCccCHHHHcC------CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhC
Confidence               3456889999997532      235778999999999999999999999754321  22222222111000 00000


Q ss_pred             hhh-------ccChHHH-----HHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhh
Q 006559          562 FEL-------IMDKEME-----EEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDIR  606 (640)
Q Consensus       562 ~~~-------~~~~~~~-----~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i~  606 (640)
                      +..       .......     ....++.+++.+||+.||++|||+.|+++  .+++++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~  329 (394)
T 4e7w_A          271 PNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFFDELR  329 (394)
T ss_dssp             GGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGSTTT
T ss_pred             hhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcChhhhhhc
Confidence            000       0000000     12245778888999999999999999975  344444

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=1.8e-36  Score=319.32  Aligned_cols=261  Identities=17%  Similarity=0.295  Sum_probs=175.6

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCe-------EEEEEec
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDE-------LFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~-------~~lV~Ey  408 (640)
                      .+.||+|+||.||+|+.. ++..||||++... .......++++.++.++||||+++++++...+.       .++||||
T Consensus        28 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~~lv~e~  107 (360)
T 3e3p_A           28 ERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEY  107 (360)
T ss_dssp             C----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCTTCEEEEEEEEC
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCCcccHHHhhhccccccccceeEEEEeec
Confidence            567999999999999974 6889999988654 334456677888888999999999999975433       8899999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC-CCCeEEccCCcccccCC
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ-LGNACISDIGVHQLFHT  487 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~-~~~~kl~DfGl~~~~~~  487 (640)
                      +++ +|.+.+..... ....+++..+..++.|++.||.|||.. ..+|+||||||+|||++. ++.+||+|||+++....
T Consensus       108 ~~~-~l~~~~~~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~-~~~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~  184 (360)
T 3e3p_A          108 VPD-TLHRCCRNYYR-RQVAPPPILIKVFLFQLIRSIGCLHLP-SVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSP  184 (360)
T ss_dssp             CSC-BHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHTST-TTCCBCSCCCGGGEEEETTTTEEEECCCTTCBCCCT
T ss_pred             ccc-cHHHHHHHHhh-cccCCCHHHHHHHHHHHHHHHHHHhCC-CCCeecCcCCHHHEEEeCCCCcEEEeeCCCceecCC
Confidence            986 55444331100 112578889999999999999999932 345999999999999996 89999999999987643


Q ss_pred             -----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc--hHHHHHHhhcccc-cccc
Q 006559          488 -----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG--IVKWVQMMGQDES-AWEV  559 (640)
Q Consensus       488 -----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~--~~~~~~~~~~~~~-~~~~  559 (640)
                           ...+|..|+|||++.      ....++.++|||||||++|||+||+.||......  ....++....... .+..
T Consensus       185 ~~~~~~~~gt~~y~aPE~~~------~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (360)
T 3e3p_A          185 SEPNVAYICSRYYRAPELIF------GNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLRK  258 (360)
T ss_dssp             TSCCCSTTSCGGGCCHHHHT------TCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHH
T ss_pred             CCCcccccCCcceeCHHHHc------CCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcCCCCHHHHHh
Confidence                 234588999999753      2334678999999999999999999999754321  1111221111100 0000


Q ss_pred             cch-----hh----------ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhhc
Q 006559          560 FDF-----EL----------IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDIRT  607 (640)
Q Consensus       560 ~d~-----~~----------~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i~~  607 (640)
                      .++     ..          ...........++.+++.+||+.||++|||+.|+++  .++++..
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~  323 (360)
T 3e3p_A          259 LNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYFDELHD  323 (360)
T ss_dssp             HCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSGGGGGGGC
T ss_pred             cccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcCccccccCC
Confidence            000     00          000000112456788889999999999999999975  4555543

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=3.2e-36  Score=309.73  Aligned_cols=237  Identities=20%  Similarity=0.303  Sum_probs=182.3

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc------cchHHHHHHHHHHhccCCCcccceeEEEE--cCCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER------KKKREVDEWLRVIGGLRHSNIVSIRAYCN--GKDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~------~~~~~~~~e~~~l~~l~H~niv~l~~~~~--~~~~~~lV~Ey  408 (640)
                      .+.||+|+||.||++.. .++..||||.+...      ...+.+.+|++++++++||||+++++++.  .....++||||
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~   89 (305)
T 2wtk_C           10 GDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEY   89 (305)
T ss_dssp             CCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEEEEEEC
T ss_pred             eeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEEEEehh
Confidence            56899999999999996 46789999999754      23456889999999999999999999985  34589999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-  487 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-  487 (640)
                      +++| |.+++.....   ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++..... 
T Consensus        90 ~~~~-l~~~~~~~~~---~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~  162 (305)
T 2wtk_C           90 CVCG-MQEMLDSVPE---KRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALGVAEALHPF  162 (305)
T ss_dssp             CSEE-HHHHHHHSTT---CSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECCTT
T ss_pred             ccCC-HHHHHHhCcc---cccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeeccccccccCcc
Confidence            9877 7777764321   2588999999999999999999954   599999999999999999999999999876532 


Q ss_pred             -------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccccc
Q 006559          488 -------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVF  560 (640)
Q Consensus       488 -------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  560 (640)
                             ...++..|+|||++...     ...++.++|||||||++|||+||+.||....  .....+......      
T Consensus       163 ~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~~~i~~~~------  229 (305)
T 2wtk_C          163 AADDTCRTSQGSPAFQPPEIANGL-----DTFSGFKVDIWSAGVTLYNITTGLYPFEGDN--IYKLFENIGKGS------  229 (305)
T ss_dssp             CSSCEECCCCSCGGGCCHHHHTCC-----SCEESHHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHCC------
T ss_pred             ccccccccCCCCCCCcChhhccCc-----ccCCcchhhHHHHHHHHHHHHhCCCCCCCch--HHHHHHHHhcCC------
Confidence                   23458899999976321     1223578999999999999999999997543  222222221111      


Q ss_pred             chhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          561 DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       561 d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                         ......   ....+.+++.+||+.||++|||+.++++
T Consensus       230 ---~~~~~~---~~~~l~~li~~~l~~dp~~Rps~~~ll~  263 (305)
T 2wtk_C          230 ---YAIPGD---CGPPLSDLLKGMLEYEPAKRFSIRQIRQ  263 (305)
T ss_dssp             ---CCCCSS---SCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             ---CCCCCc---cCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence               001111   1234567788899999999999999985

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=2.7e-36  Score=309.15  Aligned_cols=244  Identities=18%  Similarity=0.240  Sum_probs=188.8

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc-----------chHHHHHHHHHHhccC-CCcccceeEEEEcCCeEEE
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-----------KKREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELFL  404 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-----------~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~l  404 (640)
                      .+.||+|+||.||+|+.. +++.||||.+....           ..+.+.+|+++++++. ||||+++++++...+..++
T Consensus        22 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~l  101 (298)
T 1phk_A           22 KEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFL  101 (298)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             eeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeeccCCeEEE
Confidence            568999999999999975 57899999986431           1345678899999995 9999999999999999999


Q ss_pred             EEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          405 VYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      ||||+++|+|.+++....     .+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.+||+|||++..
T Consensus       102 v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~  173 (298)
T 1phk_A          102 VFDLMKKGELFDYLTEKV-----TLSEKETRKIMRALLEVICALHK---LNIVHRDLKPENILLDDDMNIKLTDFGFSCQ  173 (298)
T ss_dssp             EEECCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEeccCCCcHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEEcCCCcEEEecccchhh
Confidence            999999999999997542     58899999999999999999995   4599999999999999999999999999877


Q ss_pred             cCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccc
Q 006559          485 FHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       485 ~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  559 (640)
                      ...     ...++..|+|||++..... .....++.++|||||||++|||++|+.||......  ...+........  .
T Consensus       174 ~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~~~~~--~  248 (298)
T 1phk_A          174 LDPGEKLREVCGTPSYLAPEIIECSMN-DNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQM--LMLRMIMSGNYQ--F  248 (298)
T ss_dssp             CCTTCCBCCCCSCGGGCCHHHHHHHHC-TTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHTCCC--C
T ss_pred             cCCCcccccccCCccccCHHHhccccc-cccccCCcccccHhHHHHHHHHHHCCCCCcCccHH--HHHHHHhcCCcc--c
Confidence            543     2345889999997532110 12345778999999999999999999999753321  111111111000  0


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..      +........+.+++.+||+.||++|||+.++++
T Consensus       249 ~~------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (298)
T 1phk_A          249 GS------PEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA  283 (298)
T ss_dssp             CT------TTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             Cc------ccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence            00      011122335677888899999999999999864

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=2.3e-36  Score=322.46  Aligned_cols=251  Identities=17%  Similarity=0.227  Sum_probs=185.3

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc-cchHHHHHHHHHHhccC--------CCcccceeEEEE----cCCeE
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER-KKKREVDEWLRVIGGLR--------HSNIVSIRAYCN----GKDEL  402 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~--------H~niv~l~~~~~----~~~~~  402 (640)
                      ..+.||+|+||.||+|+. .+++.||||+++.. ...+.+.+|+++++.++        |+||+++++++.    .....
T Consensus        41 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~  120 (397)
T 1wak_A           41 VIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHI  120 (397)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEE
T ss_pred             EEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCceE
Confidence            356899999999999985 56788999999765 33466788999888885        888999999987    55689


Q ss_pred             EEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC----------
Q 006559          403 FLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG----------  472 (640)
Q Consensus       403 ~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~----------  472 (640)
                      ++||||+ +|+|.+++....   ...+++..+..++.|++.||+|||+.+  +|+||||||+|||++.++          
T Consensus       121 ~lv~e~~-~~~l~~~~~~~~---~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~~~~~~~  194 (397)
T 1wak_A          121 CMVFEVL-GHHLLKWIIKSN---YQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIRRLAAEA  194 (397)
T ss_dssp             EEEECCC-CCBHHHHHHHTT---TSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHHHHHHHH
T ss_pred             EEEEecc-CccHHHHHHhcc---cCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhhhhhhhh
Confidence            9999999 566666665432   125889999999999999999999641  699999999999999775          


Q ss_pred             ---------------------------------------CeEEccCCcccccCC---CccccccccCCccccCCCCcccc
Q 006559          473 ---------------------------------------NACISDIGVHQLFHT---PFFINDAYNAPELKFNNNNNYSQ  510 (640)
Q Consensus       473 ---------------------------------------~~kl~DfGl~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~  510 (640)
                                                             .+||+|||+++....   ...+|..|+|||++.       .
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~-------~  267 (397)
T 1wak_A          195 TEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLI-------G  267 (397)
T ss_dssp             C---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGGGCCHHHHH-------T
T ss_pred             HHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccCccCCCCCcccCChhhc-------C
Confidence                                                   899999999987643   345688999999753       3


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCcc--------hHHHHHHhhcccc--------cccccch----------h-
Q 006559          511 RKFWQRCDVYSFGVVLLEILTGKMAKGDGELG--------IVKWVQMMGQDES--------AWEVFDF----------E-  563 (640)
Q Consensus       511 ~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~--------~~~~~~~~~~~~~--------~~~~~d~----------~-  563 (640)
                      ..++.++|||||||++|||+||+.||......        +....+.......        ....+..          . 
T Consensus       268 ~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (397)
T 1wak_A          268 SGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKP  347 (397)
T ss_dssp             SCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCC
T ss_pred             CCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCC
Confidence            45778999999999999999999999743211        0111111111000        0000000          0 


Q ss_pred             -------hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          564 -------LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       564 -------~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                             ........+....+.+++.+||+.||++|||+.|+++
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  391 (397)
T 1wak_A          348 WGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR  391 (397)
T ss_dssp             CCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred             cchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence                   0000011344567888999999999999999999875

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.1e-36  Score=323.89  Aligned_cols=255  Identities=21%  Similarity=0.321  Sum_probs=184.6

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcC----------------
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGK----------------  399 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~----------------  399 (640)
                      ..+.||+|+||.||+|+. .+|+.||||++....  +...+|+++++.++|||||++++++...                
T Consensus        11 ~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~--~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~~~~~~~   88 (383)
T 3eb0_A           11 LGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP--RYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQPPDDHNK   88 (383)
T ss_dssp             EEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT--TSCCHHHHHHTTCCCTTBCCEEEEEEEC----------------
T ss_pred             EEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc--chHHHHHHHHHHcCCCCccchhheeeecCccccccccccccccc
Confidence            357899999999999985 578999999986542  2234689999999999999999998543                


Q ss_pred             ----------------------CeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCce
Q 006559          400 ----------------------DELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLF  457 (640)
Q Consensus       400 ----------------------~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iv  457 (640)
                                            ...++||||++ |+|.+.+..... ....+++..+..++.|+++||+|||+   .+|+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~-~~~~l~~~~~~~i~~qi~~aL~~LH~---~gi~  163 (383)
T 3eb0_A           89 LGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIR-SGRSIPMNLISIYIYQLFRAVGFIHS---LGIC  163 (383)
T ss_dssp             ---------------------CCEEEEEECCCS-EEHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHHT---TTEE
T ss_pred             ccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHH---CcCc
Confidence                                  34889999998 588777653111 11258899999999999999999994   5699


Q ss_pred             ecCCCCCCeEEC-CCCCeEEccCCcccccCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh
Q 006559          458 HGHLSSSNIVVD-QLGNACISDIGVHQLFHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT  531 (640)
Q Consensus       458 Hrdlk~~NILl~-~~~~~kl~DfGl~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t  531 (640)
                      ||||||+|||++ .++.+||+|||+++....     ...++..|+|||++.+      ...++.++||||+||++|||++
T Consensus       164 H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~------~~~~~~~~DiwslG~il~ell~  237 (383)
T 3eb0_A          164 HRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLG------ATEYTPSIDLWSIGCVFGELIL  237 (383)
T ss_dssp             CSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHHHTT------CSSCCTHHHHHHHHHHHHHHHH
T ss_pred             cCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCcccCCCccCHHHhcC------CCCCCcchhhhhHHHHHHHHHh
Confidence            999999999998 689999999999986532     2355888999997532      2347789999999999999999


Q ss_pred             CCCCCCCCCcc--hHHHHHHhhccccc---------ccc-------cchhhccChHHHHHHHHHHHHHHHccCCCCCCCC
Q 006559          532 GKMAKGDGELG--IVKWVQMMGQDESA---------WEV-------FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRP  593 (640)
Q Consensus       532 g~~p~~~~~~~--~~~~~~~~~~~~~~---------~~~-------~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RP  593 (640)
                      |+.||......  +...++..+.....         ...       .+.....+.   ....++.+++.+||+.||++||
T Consensus       238 g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~L~~dP~~R~  314 (383)
T 3eb0_A          238 GKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPE---GTPSLAIDLLEQILRYEPDLRI  314 (383)
T ss_dssp             SSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCT---TCCHHHHHHHHHHCCSSGGGSC
T ss_pred             CCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCC---CCCHHHHHHHHHHccCChhhCC
Confidence            99999753321  12222222111000         000       000000111   1223577888899999999999


Q ss_pred             CHHHHHH--HHHHhhc
Q 006559          594 NMSIVHR--MIEDIRT  607 (640)
Q Consensus       594 s~~~v~~--~L~~i~~  607 (640)
                      |+.|+++  .+++++.
T Consensus       315 t~~e~l~hp~f~~~~~  330 (383)
T 3eb0_A          315 NPYEAMAHPFFDHLRN  330 (383)
T ss_dssp             CHHHHHTSGGGHHHHH
T ss_pred             CHHHHhcCHHHHHHHh
Confidence            9999973  5555544

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=6e-36  Score=318.06  Aligned_cols=191  Identities=24%  Similarity=0.321  Sum_probs=158.7

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc-chHHHHHHHHHHhccC-CC-----cccceeEEEEcCCeEEEEEec
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-KKREVDEWLRVIGGLR-HS-----NIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-~~~~~~~e~~~l~~l~-H~-----niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      ..+.||+|+||.||+|+.. +++.||||+++... ...++..|+++++.++ |+     +|+++.+++...+..++||||
T Consensus        58 ~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~  137 (382)
T 2vx3_A           58 IDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEM  137 (382)
T ss_dssp             EEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEEEEEEEC
T ss_pred             EEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCceEEEEec
Confidence            3578999999999999865 57889999997653 3455667777777664 44     499999999999999999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC--CCCCeEEccCCcccccC
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD--QLGNACISDIGVHQLFH  486 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~--~~~~~kl~DfGl~~~~~  486 (640)
                      ++ |+|.+++.....   ..+++..+..++.|++.||+|||+. +.+|+||||||+|||++  .++.+||+|||+++...
T Consensus       138 ~~-~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~  212 (382)
T 2vx3_A          138 LS-YNLYDLLRNTNF---RGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLG  212 (382)
T ss_dssp             CC-CBHHHHHHHTTT---SCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETT
T ss_pred             CC-CCHHHHHhhcCc---CCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccCceecc
Confidence            96 599999976531   2488999999999999999999963 35799999999999994  57889999999998765


Q ss_pred             C---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 006559          487 T---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDG  539 (640)
Q Consensus       487 ~---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~  539 (640)
                      .   ...+|..|+|||++.       ...++.++|||||||++|||+||+.||...
T Consensus       213 ~~~~~~~~t~~y~aPE~~~-------~~~~~~~~DiwSlG~il~elltg~~pf~~~  261 (382)
T 2vx3_A          213 QRIYQYIQSRFYRSPEVLL-------GMPYDLAIDMWSLGCILVEMHTGEPLFSGA  261 (382)
T ss_dssp             CCCCSSCSCGGGCCHHHHT-------TCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cccccccCCccccChHHHc-------CCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            3   345688999999753       345778999999999999999999999853

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=2.5e-36  Score=317.27  Aligned_cols=248  Identities=17%  Similarity=0.291  Sum_probs=185.6

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcC-----CeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGK-----DELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~-----~~~~lV~E  407 (640)
                      ..+.||+|+||.||+|+.. +|+.||||++....   ....+.+|++++++++||||+++++++...     ...++|||
T Consensus        15 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e   94 (353)
T 2b9h_A           15 LKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQE   94 (353)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCEEEEEC
T ss_pred             EeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceEEEEEe
Confidence            3568999999999999965 68899999997542   235577899999999999999999998754     67999999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      |++ |+|.+++...      .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....
T Consensus        95 ~~~-~~L~~~~~~~------~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~  164 (353)
T 2b9h_A           95 LMQ-TDLHRVISTQ------MLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLARIIDE  164 (353)
T ss_dssp             CCS-EEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECC-
T ss_pred             ccC-ccHHHHHhhc------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEeccccccccc
Confidence            997 6999998753      488999999999999999999954   599999999999999999999999999886532


Q ss_pred             ----------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcch-HH-HHHH
Q 006559          488 ----------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGI-VK-WVQM  549 (640)
Q Consensus       488 ----------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~-~~-~~~~  549 (640)
                                      ...+|..|+|||++.      ....++.++|||||||++|||++|+.||....... .. ....
T Consensus       165 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~  238 (353)
T 2b9h_A          165 SAADNSEPTGQQSGMVEFVATRWYRAPEVML------TSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGI  238 (353)
T ss_dssp             ---------------CCCCCCGGGCCHHHHH------SCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             ccccccCccccccchhhccccccccCCeeec------cCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHH
Confidence                            124578899999752      23457789999999999999999999997543211 11 1111


Q ss_pred             hhccc--cccccc-ch-------hhc---cC---hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          550 MGQDE--SAWEVF-DF-------ELI---MD---KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       550 ~~~~~--~~~~~~-d~-------~~~---~~---~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .....  ...... ..       .+.   ..   ........++.+++.+||+.||++|||+.|+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (353)
T 2b9h_A          239 IGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE  305 (353)
T ss_dssp             HCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence            11100  000000 00       000   00   000122345678888999999999999999875

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=5.7e-36  Score=316.91  Aligned_cols=246  Identities=18%  Similarity=0.265  Sum_probs=182.0

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeE------EEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDEL------FLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~------~lV~  406 (640)
                      .+.||+|+||.||+|+. .+|+.||||++....    ..+.+.+|+.+++.++||||+++++++...+..      ++||
T Consensus        47 ~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~  126 (371)
T 4exu_A           47 PTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVM  126 (371)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCCCEEEE
T ss_pred             EeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccceeEEEEE
Confidence            56799999999999985 468899999997542    235677899999999999999999999876654      9999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||++ |+|.+++..       .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus       127 e~~~-~~l~~~~~~-------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~  195 (371)
T 4exu_A          127 PFMQ-TDLQKIMGM-------EFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLARHAD  195 (371)
T ss_dssp             ECCC-EEHHHHTTS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECSTTCC----
T ss_pred             cccc-ccHHHHhhc-------CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEecCcccccc
Confidence            9997 689888742       378999999999999999999954   59999999999999999999999999998764


Q ss_pred             C---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-h-HHHHHHhhcccc-ccccc
Q 006559          487 T---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-I-VKWVQMMGQDES-AWEVF  560 (640)
Q Consensus       487 ~---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~-~~~~~~~~~~~~-~~~~~  560 (640)
                      .   ...+|..|+|||++..      ...++.++|||||||++|||+||+.||...... . ....+....... .....
T Consensus       196 ~~~~~~~~t~~y~aPE~~~~------~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  269 (371)
T 4exu_A          196 AEMTGYVVTRWYRAPEVILS------WMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKL  269 (371)
T ss_dssp             ----CTTCCCTTSCHHHHSC------CSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTC
T ss_pred             cCcCCcccCccccCHHHhcC------CCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHHHh
Confidence            3   3456889999997532      245778999999999999999999999754321 1 111111111000 00000


Q ss_pred             c-h-------hhc--cChH----HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          561 D-F-------ELI--MDKE----MEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       561 d-~-------~~~--~~~~----~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      + .       ...  ....    .......+.+++.+||+.||++|||+.|+++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  323 (371)
T 4exu_A          270 NDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT  323 (371)
T ss_dssp             SCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             hhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence            0 0       000  0000    0112346778888999999999999999864

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=1.2e-36  Score=327.21  Aligned_cols=257  Identities=21%  Similarity=0.305  Sum_probs=183.4

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcC------CeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGK------DELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------~~~~lV~Ey~  409 (640)
                      ..++||+|+||.||+|+.. +++.||||++....  +...+|++++++++|||||+++++|...      ...++||||+
T Consensus        58 ~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~  135 (420)
T 1j1b_A           58 DTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK--RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV  135 (420)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT--TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEECC
T ss_pred             eeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc--hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeehhcc
Confidence            3568999999999999975 58999999986542  2234689999999999999999998542      2367999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC-CCeEEccCCcccccCC-
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL-GNACISDIGVHQLFHT-  487 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~-~~~kl~DfGl~~~~~~-  487 (640)
                      ++ ++.+.+..... ....+++..+..++.|+++||+|||+   .+|+||||||+|||++.+ +.+||+|||+++.... 
T Consensus       136 ~~-~l~~~~~~~~~-~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~  210 (420)
T 1j1b_A          136 PE-TVYRVARHYSR-AKQTLPVIYVKLYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG  210 (420)
T ss_dssp             CE-EHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred             cc-cHHHHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChhhEEEeCCCCeEEeccchhhhhcccC
Confidence            86 66665542110 11258899999999999999999994   569999999999999965 5789999999986532 


Q ss_pred             ----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc--chHHHHHHhhcccc------
Q 006559          488 ----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL--GIVKWVQMMGQDES------  555 (640)
Q Consensus       488 ----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~--~~~~~~~~~~~~~~------  555 (640)
                          ...+|..|+|||++.+      ...++.++|||||||++|||++|+.||.+...  .+...++..+....      
T Consensus       211 ~~~~~~~~t~~y~aPE~~~~------~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~  284 (420)
T 1j1b_A          211 EPNVSYICSRYYRAPELIFG------ATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREM  284 (420)
T ss_dssp             CCCCSCCSCTTSCCHHHHTT------CSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred             CCceeeeeCCCcCCHHHHcC------CCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhh
Confidence                3456889999997532      23577899999999999999999999975432  12222222221100      


Q ss_pred             ---cccccchhhccChH----HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhh
Q 006559          556 ---AWEVFDFELIMDKE----MEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDIR  606 (640)
Q Consensus       556 ---~~~~~d~~~~~~~~----~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i~  606 (640)
                         ..+..-+.+.....    ......++.+++.+||+.||++||++.|+++  .+++++
T Consensus       285 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~hp~f~~~~  344 (420)
T 1j1b_A          285 NPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELR  344 (420)
T ss_dssp             CSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGG
T ss_pred             ChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCCHhhcccc
Confidence               00000000000000    0011245778888999999999999999974  455554

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=8.1e-36  Score=304.14  Aligned_cols=242  Identities=19%  Similarity=0.273  Sum_probs=189.2

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|+.. +++.||||.+...    ...+.+.+|++++++++||||+++++++...+..++||||++++
T Consensus        27 ~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~  106 (287)
T 2wei_A           27 VCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGG  106 (287)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             eEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEEEccCCC
Confidence            568999999999999975 6889999998654    23567889999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC---CCeEEccCCcccccCCC-
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL---GNACISDIGVHQLFHTP-  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~---~~~kl~DfGl~~~~~~~-  488 (640)
                      +|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+||+++.+   +.+||+|||+++..... 
T Consensus       107 ~L~~~l~~~~-----~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~  178 (287)
T 2wei_A          107 ELFDEIIKRK-----RFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNT  178 (287)
T ss_dssp             BHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCS
T ss_pred             CHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEeccCcceeecCCC
Confidence            9999886543     588999999999999999999954   59999999999999754   47999999998865432 


Q ss_pred             ----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          489 ----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       489 ----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                          ..++..|+|||++.        ..++.++||||||+++|||+||+.||.....  ....+.........   +  .
T Consensus       179 ~~~~~~~~~~y~aPE~~~--------~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~~~~~~~~~~~~~~---~--~  243 (287)
T 2wei_A          179 KMKDRIGTAYYIAPEVLR--------GTYDEKCDVWSAGVILYILLSGTPPFYGKNE--YDILKRVETGKYAF---D--L  243 (287)
T ss_dssp             SCSCHHHHHTTCCHHHHT--------TCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCCCCC---C--S
T ss_pred             ccccccCcccccChHHhc--------CCCCCchhhHhHHHHHHHHHhCCCCCCCCCH--HHHHHHHHcCCCCC---C--c
Confidence                23477899999753        2367899999999999999999999975432  12222221111000   0  0


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHh
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDI  605 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i  605 (640)
                         +.......++.+++..||+.||++|||+.++++  .+++.
T Consensus       244 ---~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~hp~~~~~  283 (287)
T 2wei_A          244 ---PQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKY  283 (287)
T ss_dssp             ---GGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHHH
T ss_pred             ---hhhhhcCHHHHHHHHHHcccChhhCcCHHHHhcCHHHhcc
Confidence               001112234677888899999999999999986  44443

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=6e-36  Score=310.72  Aligned_cols=250  Identities=22%  Similarity=0.337  Sum_probs=182.8

Q ss_pred             hhccccccCcceEEEEEe--CCCcEEEEEEecccc----chHHHHHHHHHHhcc---CCCcccceeEEEE-----cCCeE
Q 006559          337 SAELLGKGCVGATYKVVL--DGGDVVVVKRIRERK----KKREVDEWLRVIGGL---RHSNIVSIRAYCN-----GKDEL  402 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~--~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l---~H~niv~l~~~~~-----~~~~~  402 (640)
                      ..+.||+|+||.||+|+.  .+++.||||++....    ....+.+|+.+++.+   +||||+++++++.     .....
T Consensus        15 ~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~   94 (326)
T 1blx_A           15 CVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKL   94 (326)
T ss_dssp             EEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEE
T ss_pred             eeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCCCceE
Confidence            356899999999999997  467889999987542    123455666666555   8999999999987     45679


Q ss_pred             EEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcc
Q 006559          403 FLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVH  482 (640)
Q Consensus       403 ~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~  482 (640)
                      ++||||++ |+|.+++.....   ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++
T Consensus        95 ~lv~e~~~-~~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~kl~Dfg~~  167 (326)
T 1blx_A           95 TLVFEHVD-QDLTTYLDKVPE---PGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLA  167 (326)
T ss_dssp             EEEEECCS-CBHHHHHHHSCT---TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECSCCSC
T ss_pred             EEEEecCC-CCHHHHHHhccc---CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCEEEecCccc
Confidence            99999998 699999976532   2488999999999999999999954   5999999999999999999999999998


Q ss_pred             cccCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHH-HHHHhhccc-
Q 006559          483 QLFHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVK-WVQMMGQDE-  554 (640)
Q Consensus       483 ~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~-~~~~~~~~~-  554 (640)
                      +....     ...++..|+|||++.       ...++.++|||||||++|||+||+.||...... ... .+....... 
T Consensus       168 ~~~~~~~~~~~~~~~~~y~aPE~~~-------~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~  240 (326)
T 1blx_A          168 RIYSFQMALTSVVVTLWYRAPEVLL-------QSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGE  240 (326)
T ss_dssp             CCCCGGGGGCCCCCCCTTCCHHHHT-------TCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCG
T ss_pred             ccccCCCCccccccccceeCHHHHh-------cCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCc
Confidence            76542     234588999999753       345778999999999999999999999754321 111 111111100 


Q ss_pred             cccc--------ccchh--hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          555 SAWE--------VFDFE--LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       555 ~~~~--------~~d~~--~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..+.        .+...  .............+.+++.+||+.||++||++.++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  296 (326)
T 1blx_A          241 EDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  296 (326)
T ss_dssp             GGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             ccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            0000        00000  0000000112234667888899999999999999874

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=5.1e-36  Score=312.87  Aligned_cols=240  Identities=18%  Similarity=0.244  Sum_probs=163.5

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEc----CCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNG----KDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~----~~~~~lV~Ey~~~g  412 (640)
                      .++||+|+||.||+|+.. +++.||||++....  +...+....++.++||||+++++++..    ....++||||+++|
T Consensus        34 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg  111 (336)
T 3fhr_A           34 KQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP--KARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGG  111 (336)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEESSH--HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCTTE
T ss_pred             ceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH--HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEEEEEeccCCC
Confidence            457999999999999975 68899999987542  222223344566799999999999876    44589999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC---CCCeEEccCCcccccCC--
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ---LGNACISDIGVHQLFHT--  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~---~~~~kl~DfGl~~~~~~--  487 (640)
                      +|.+++.....   ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.   ++.+||+|||+++....  
T Consensus       112 ~L~~~l~~~~~---~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~  185 (336)
T 3fhr_A          112 ELFSRIQERGD---QAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNA  185 (336)
T ss_dssp             EHHHHHHTC-C---CCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC----
T ss_pred             CHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEeccccceeccccc
Confidence            99999986532   3589999999999999999999954   5999999999999986   45699999999986543  


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHH--HHHHhhcccccccccchh
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVK--WVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~--~~~~~~~~~~~~~~~d~~  563 (640)
                        ...++..|+|||++       ....++.++|||||||++|||+||+.||.........  ..+.....       ...
T Consensus       186 ~~~~~~t~~y~aPE~~-------~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~-------~~~  251 (336)
T 3fhr_A          186 LQTPCYTPYYVAPEVL-------GPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLG-------QYG  251 (336)
T ss_dssp             -------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC----------------------------C
T ss_pred             cccCCCCcCccChhhh-------CCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhcc-------ccc
Confidence              23458899999964       3345678999999999999999999999743221110  00000000       000


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .. .+.......++.+++..||+.||++|||+.|+++
T Consensus       252 ~~-~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  287 (336)
T 3fhr_A          252 FP-NPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMN  287 (336)
T ss_dssp             CC-TTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             cC-chhhccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            00 0001122334667888899999999999999986

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=3.7e-36  Score=310.62  Aligned_cols=243  Identities=17%  Similarity=0.231  Sum_probs=183.6

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEecccc----chHHHHHHHHHHhccC--CCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERK----KKREVDEWLRVIGGLR--HSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~--H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..+.||+|+||.||+++..+++.||||.+....    ..+.+.+|++++++++  ||||+++++++...+..++||| +.
T Consensus        32 ~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e-~~  110 (313)
T 3cek_A           32 ILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CG  110 (313)
T ss_dssp             EEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEEEC-CC
T ss_pred             EEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEEEe-cC
Confidence            356899999999999998889999999986542    2356788999999997  4999999999999999999999 56


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                      +|+|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||+++ +.+||+|||+++....   
T Consensus       111 ~~~L~~~l~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~~~~  181 (313)
T 3cek_A          111 NIDLNSWLKKKK-----SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDTT  181 (313)
T ss_dssp             SEEHHHHHHHCS-----SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEET-TEEEECCCSSSCC------
T ss_pred             CCcHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEEC-CeEEEeeccccccccCccc
Confidence            889999998643     588999999999999999999954   5999999999999964 8999999999986532   


Q ss_pred             -----CccccccccCCccccCCCCc----cccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccc
Q 006559          488 -----PFFINDAYNAPELKFNNNNN----YSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE  558 (640)
Q Consensus       488 -----~~~~~~~y~aPE~~~~~~~~----~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  558 (640)
                           ...++..|+|||++......    .....++.++|||||||++|||+||+.||................. ... 
T Consensus       182 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~-~~~-  259 (313)
T 3cek_A          182 SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPN-HEI-  259 (313)
T ss_dssp             --------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTT-SCC-
T ss_pred             cccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcc-ccc-
Confidence                 22458899999986432111    1124678899999999999999999999975332222211111111 000 


Q ss_pred             ccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       559 ~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                            ..+...   ..++.+++.+||+.||++||++.|+++
T Consensus       260 ------~~~~~~---~~~l~~li~~~l~~dp~~Rps~~ell~  292 (313)
T 3cek_A          260 ------EFPDIP---EKDLQDVLKCCLKRDPKQRISIPELLA  292 (313)
T ss_dssp             ------CCCCCS---CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ------CCcccc---hHHHHHHHHHHccCCcccCcCHHHHhc
Confidence                  001111   234667788899999999999999975

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=2.9e-36  Score=313.50  Aligned_cols=255  Identities=20%  Similarity=0.251  Sum_probs=170.0

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccccc---hHHHHHHHH-HHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERKK---KREVDEWLR-VIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~---~~~~~~e~~-~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|+.. +++.||||++.....   ..++..|+. +++.++||||+++++++...+..++||||+++ 
T Consensus        27 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e~~~~-  105 (327)
T 3aln_A           27 LGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMST-  105 (327)
T ss_dssp             -CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEECCCSE-
T ss_pred             hheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEeecCC-
Confidence            567999999999999974 688999999976522   233444444 77888999999999999999999999999985 


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|.+++..........+++..+..++.|++.||.|||+.  .+|+||||||+|||++.++.+||+|||+++.....    
T Consensus       106 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~  183 (327)
T 3aln_A          106 SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKT  183 (327)
T ss_dssp             EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHH--HSCCCSCCCGGGEEEETTTEEEECCCSSSCC--------
T ss_pred             ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhcc--CCEeECCCCHHHEEEcCCCCEEEccCCCceecccccccc
Confidence            887776531111122588999999999999999999953  15999999999999999999999999999775432    


Q ss_pred             -ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          489 -FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       489 -~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                       ..++..|+|||++...   .....++.++|||||||++|||+||+.||....... ..........      .+.+.. 
T Consensus       184 ~~~gt~~y~aPE~~~~~---~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~------~~~~~~-  252 (327)
T 3aln_A          184 RDAGCRPYMAPERIDPS---ASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVF-DQLTQVVKGD------PPQLSN-  252 (327)
T ss_dssp             -------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC--------CCCCCSC------CCCCCC-
T ss_pred             cCCCCccccCceeeccc---cCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHH-HHHHHHhcCC------CCCCCC-
Confidence             2467889999975221   123457889999999999999999999997432111 1111100000      000000 


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhh
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDIR  606 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i~  606 (640)
                      ........++.+++..||+.||++||++.++++  .+.+..
T Consensus       253 ~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~~~~~~  293 (327)
T 3aln_A          253 SEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILMYE  293 (327)
T ss_dssp             CSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHhhCChhhCcCHHHHHhChHHHHhH
Confidence            000112235677888899999999999999975  444443

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=6e-36  Score=322.55  Aligned_cols=239  Identities=18%  Similarity=0.218  Sum_probs=176.2

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ..++||+|+||+||.....+++.||||++..... ..+.+|+++++++ +|||||++++++.+....|+|||||+ |+|.
T Consensus        28 ~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~-~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~-g~L~  105 (432)
T 3p23_A           28 PKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF-SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA-ATLQ  105 (432)
T ss_dssp             EEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE-EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCS-EEHH
T ss_pred             cCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH-HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCC-CCHH
Confidence            3578999999997665567789999999865422 2356788899988 79999999999999999999999996 6999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC-----CCCeEEccCCcccccCC---
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ-----LGNACISDIGVHQLFHT---  487 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~-----~~~~kl~DfGl~~~~~~---  487 (640)
                      +++.....    .+.+.....++.|++.||+|||+.   +|+||||||+|||++.     ...+||+|||+++....   
T Consensus       106 ~~l~~~~~----~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~  178 (432)
T 3p23_A          106 EYVEQKDF----AHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRH  178 (432)
T ss_dssp             HHHHSSSC----CCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC-----
T ss_pred             HHHHhcCC----CccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCc
Confidence            99976542    233445678999999999999954   5999999999999953     34688999999986542   


Q ss_pred             ------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhccccccccc
Q 006559          488 ------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVF  560 (640)
Q Consensus       488 ------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  560 (640)
                            ...+|..|+|||++...    ....++.++|||||||++|||+| |+.||...........   .... .....
T Consensus       179 ~~~~~~~~~gt~~y~APE~l~~~----~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~~~---~~~~-~~~~~  250 (432)
T 3p23_A          179 SFSRRSGVPGTEGWIAPEMLSED----CKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANIL---LGAC-SLDCL  250 (432)
T ss_dssp             -------CCSCTTSCCGGGTSCC-------CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHHHH---TTCC-CCTTS
T ss_pred             ceeeccccCCCcCccChhhhhcc----cccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHHHH---hccC-Ccccc
Confidence                  23468999999976321    13456779999999999999999 8999965432222111   1100 00000


Q ss_pred             chhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 006559          561 DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVH  599 (640)
Q Consensus       561 d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~  599 (640)
                      .    ...   .....+.+++.+||+.||++|||+.+|+
T Consensus       251 ~----~~~---~~~~~~~~li~~~L~~dP~~Rps~~evl  282 (432)
T 3p23_A          251 H----PEK---HEDVIARELIEKMIAMDPQKRPSAKHVL  282 (432)
T ss_dssp             C----TTC---HHHHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred             C----ccc---cccHHHHHHHHHHHhCCHhhCCCHHHHH
Confidence            0    111   2223456788889999999999999998

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=6.4e-36  Score=314.37  Aligned_cols=246  Identities=17%  Similarity=0.249  Sum_probs=181.7

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCe------EEEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDE------LFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~------~~lV~  406 (640)
                      .+.||+|+||.||+|+. .+|+.||||++....    ..+.+.+|+.++++++||||+++++++...+.      .|+||
T Consensus        29 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~  108 (353)
T 3coi_A           29 PTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVM  108 (353)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEE
T ss_pred             eeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccceeEEEEe
Confidence            56799999999999996 468899999997542    23567789999999999999999999987643      59999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||++ |+|.+++..       .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus       109 e~~~-~~l~~~~~~-------~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~  177 (353)
T 3coi_A          109 PFMQ-TDLQKIMGL-------KFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLARHAD  177 (353)
T ss_dssp             ECCS-EEGGGTTTS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECSTTCTTC--
T ss_pred             cccc-CCHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeecccccCCC
Confidence            9997 688887742       378999999999999999999954   59999999999999999999999999998764


Q ss_pred             C---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHH-HHHHhhcccc-c-ccc
Q 006559          487 T---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVK-WVQMMGQDES-A-WEV  559 (640)
Q Consensus       487 ~---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~-~~~~~~~~~~-~-~~~  559 (640)
                      .   ...++..|+|||++..      ...++.++|||||||++|||+||+.||...... ... ..+..+.... . ..+
T Consensus       178 ~~~~~~~~t~~y~aPE~~~~------~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  251 (353)
T 3coi_A          178 AEMTGYVVTRWYRAPEVILS------WMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKL  251 (353)
T ss_dssp             ------CCSBCCSCHHHHSC------CSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHTTC
T ss_pred             CCccccccCcCcCCHHHHhC------cCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3   2356889999997532      245678999999999999999999999754321 111 1111111000 0 000


Q ss_pred             cch-------------hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 FDF-------------ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 ~d~-------------~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .+.             .............++.+++.+||+.||++|||+.++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~  305 (353)
T 3coi_A          252 NDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT  305 (353)
T ss_dssp             SCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             hhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            000             00000000122345777888899999999999999864

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=1.7e-35  Score=310.68  Aligned_cols=250  Identities=19%  Similarity=0.230  Sum_probs=185.3

Q ss_pred             hhccccccCcceEEEEEeC-C-CcEEEEEEeccc-cchHHHHHHHHHHhccCCCc------ccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVLD-G-GDVVVVKRIRER-KKKREVDEWLRVIGGLRHSN------IVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~-~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~n------iv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||.||+|+.. + +..||||.++.. ...+.+.+|++++++++|++      ++.+.+++...+..++|||
T Consensus        23 ~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~lv~e  102 (355)
T 2eu9_A           23 IVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFE  102 (355)
T ss_dssp             EEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEEEEEEE
T ss_pred             EEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeEEEEEe
Confidence            3568999999999999864 3 368999999765 33556778898888888766      8999999999999999999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE-------------------
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV-------------------  468 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl-------------------  468 (640)
                      |+ +|++.+++.....   .++++..+..++.|++.||+|||+   .+|+||||||+|||+                   
T Consensus       103 ~~-~~~l~~~l~~~~~---~~~~~~~~~~i~~qi~~~L~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~  175 (355)
T 2eu9_A          103 LL-GKNTFEFLKENNF---QPYPLPHVRHMAYQLCHALRFLHE---NQLTHTDLKPENILFVNSEFETLYNEHKSCEEKS  175 (355)
T ss_dssp             CC-CCBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEESCCCEEEEECCC-CCCEEE
T ss_pred             cc-CCChHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEecccccccccccccccccc
Confidence            99 6677777765431   258899999999999999999994   569999999999999                   


Q ss_pred             CCCCCeEEccCCcccccCC---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hH
Q 006559          469 DQLGNACISDIGVHQLFHT---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IV  544 (640)
Q Consensus       469 ~~~~~~kl~DfGl~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~  544 (640)
                      +.++.+||+|||+++....   ...+|..|+|||++.       ...++.++|||||||++|||+||+.||...... ..
T Consensus       176 ~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~  248 (355)
T 2eu9_A          176 VKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVIL-------ELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHL  248 (355)
T ss_dssp             ESCCCEEECCCTTCEETTSCCCSSCSCGGGCCHHHHT-------TCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH
T ss_pred             cCCCcEEEeecCccccccccccCCcCCCcccCCeeee-------cCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence            5678999999999987543   345688999999753       345778999999999999999999999754321 11


Q ss_pred             HHHHHhh-ccccc--------ccccchhhc--------------------cChHHHHHHHHHHHHHHHccCCCCCCCCCH
Q 006559          545 KWVQMMG-QDESA--------WEVFDFELI--------------------MDKEMEEEMRALLQVALLCLAPLPKDRPNM  595 (640)
Q Consensus       545 ~~~~~~~-~~~~~--------~~~~d~~~~--------------------~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~  595 (640)
                      ..+.... .....        .........                    ..........++.+++.+||+.||++|||+
T Consensus       249 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~  328 (355)
T 2eu9_A          249 VMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITL  328 (355)
T ss_dssp             HHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCH
T ss_pred             HHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCH
Confidence            1111111 00000        000000000                    000011234467889999999999999999


Q ss_pred             HHHHH
Q 006559          596 SIVHR  600 (640)
Q Consensus       596 ~~v~~  600 (640)
                      .|+++
T Consensus       329 ~e~l~  333 (355)
T 2eu9_A          329 AEALL  333 (355)
T ss_dssp             HHHTT
T ss_pred             HHHhc
Confidence            99864

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=306.60  Aligned_cols=249  Identities=20%  Similarity=0.260  Sum_probs=171.4

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccccc----hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERKK----KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~----~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|+.. +|+.||||++.....    .+.+.++..+++.++||||+++++++...+..++||||+ ++
T Consensus        30 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~  108 (318)
T 2dyl_A           30 LGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELM-GT  108 (318)
T ss_dssp             EEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCC-SE
T ss_pred             cceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEEecc-CC
Confidence            567999999999999975 688999999976522    223444556788899999999999999999999999999 45


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                      .+..+.....    ..+++..+..++.|++.||+|||+.  .+|+||||||+||+++.++.+||+|||+++....     
T Consensus       109 ~~~~l~~~~~----~~~~~~~~~~~~~~i~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~  182 (318)
T 2dyl_A          109 CAEKLKKRMQ----GPIPERILGKMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKD  182 (318)
T ss_dssp             EHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCGGGEEECTTSCEEECCCTTC----------
T ss_pred             cHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHHhh--CCEEeCCCCHHHEEECCCCCEEEEECCCchhccCCcccc
Confidence            5555544322    2588999999999999999999952  2599999999999999999999999999876532     


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                      ...++..|+|||++...  ......++.++|||||||++|||+||+.||.........+.........       .....
T Consensus       183 ~~~~~~~y~aPE~~~~~--~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~-------~~~~~  253 (318)
T 2dyl_A          183 RSAGCAAYMAPERIDPP--DPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEPP-------LLPGH  253 (318)
T ss_dssp             ----CCTTCCHHHHC----------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCCC-------CCCSS
T ss_pred             ccCCCccccChhhcccc--cccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccCCC-------CCCcc
Confidence            23468899999976321  1123457789999999999999999999997533222222211111100       00000


Q ss_pred             hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHh
Q 006559          568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDI  605 (640)
Q Consensus       568 ~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i  605 (640)
                      .   ....++.+++..||+.||++||++.++++  .+++.
T Consensus       254 ~---~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~  290 (318)
T 2dyl_A          254 M---GFSGDFQSFVKDCLTKDHRKRPKYNKLLEHSFIKRY  290 (318)
T ss_dssp             S---CCCHHHHHHHHHHTCSCTTTSCCHHHHTTSHHHHHH
T ss_pred             C---CCCHHHHHHHHHHccCChhHCcCHHHHhhCHHHHhc
Confidence            1   11234667788899999999999999975  44443

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=1e-35  Score=314.94  Aligned_cols=248  Identities=16%  Similarity=0.258  Sum_probs=184.5

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc-cchHHHHHHHHHHhccC-----------CCcccceeEEEEcCC---
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER-KKKREVDEWLRVIGGLR-----------HSNIVSIRAYCNGKD---  400 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~-----------H~niv~l~~~~~~~~---  400 (640)
                      ..+.||+|+||.||+|+. .+++.||||++... ...+.+.+|++++++++           ||||+++++++...+   
T Consensus        23 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  102 (373)
T 1q8y_A           23 LVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNG  102 (373)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTE
T ss_pred             EEEeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCCCC
Confidence            357899999999999995 56889999999755 33456778888888776           899999999998654   


Q ss_pred             -eEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC------CCCC
Q 006559          401 -ELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD------QLGN  473 (640)
Q Consensus       401 -~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~------~~~~  473 (640)
                       ..++||||+ +++|.+++.....   ..+++..+..++.|++.||+|||+.  .+|+||||||+|||++      ..+.
T Consensus       103 ~~~~lv~e~~-~~~L~~~~~~~~~---~~~~~~~~~~i~~qi~~aL~~lH~~--~~ivH~Dikp~NIll~~~~~~~~~~~  176 (373)
T 1q8y_A          103 VHVVMVFEVL-GENLLALIKKYEH---RGIPLIYVKQISKQLLLGLDYMHRR--CGIIHTDIKPENVLMEIVDSPENLIQ  176 (373)
T ss_dssp             EEEEEEECCC-CEEHHHHHHHTTT---SCCCHHHHHHHHHHHHHHHHHHHHT--TCEECSCCSGGGEEEEEEETTTTEEE
T ss_pred             ceEEEEEecC-CCCHHHHHHHhhc---cCCcHHHHHHHHHHHHHHHHHHHhc--CCEEecCCChHHeEEeccCCCcCcce
Confidence             789999999 8999999976432   2488999999999999999999964  1599999999999994      4458


Q ss_pred             eEEccCCcccccCC---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc--------
Q 006559          474 ACISDIGVHQLFHT---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG--------  542 (640)
Q Consensus       474 ~kl~DfGl~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~--------  542 (640)
                      +||+|||+++....   ...+|..|+|||++.       ...++.++|||||||++|||+||+.||......        
T Consensus       177 ~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~-------~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~  249 (373)
T 1q8y_A          177 IKIADLGNACWYDEHYTNSIQTREYRSPEVLL-------GAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDH  249 (373)
T ss_dssp             EEECCCTTCEETTBCCCSCCSCGGGCCHHHHH-------TCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHH
T ss_pred             EEEcccccccccCCCCCCCCCCccccCcHHHh-------CCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHH
Confidence            99999999987653   345688999999753       345778999999999999999999999743211        


Q ss_pred             hHHHHHHhhcccc-----------------cc------------cccchhhccChHHHHHHHHHHHHHHHccCCCCCCCC
Q 006559          543 IVKWVQMMGQDES-----------------AW------------EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRP  593 (640)
Q Consensus       543 ~~~~~~~~~~~~~-----------------~~------------~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RP  593 (640)
                      +....+.......                 ..            .+.......   ......++.+++..||+.||++||
T Consensus       250 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~L~~dP~~Rp  326 (373)
T 1q8y_A          250 IAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKF---SKDEAKEISDFLSPMLQLDPRKRA  326 (373)
T ss_dssp             HHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCC---CHHHHHHHHHHHGGGGCSSTTTCB
T ss_pred             HHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccC---CcchHHHHHHHHHHHhccCccccC
Confidence            1111111111000                 00            000000001   124456788899999999999999


Q ss_pred             CHHHHHH
Q 006559          594 NMSIVHR  600 (640)
Q Consensus       594 s~~~v~~  600 (640)
                      |+.|+++
T Consensus       327 t~~ell~  333 (373)
T 1q8y_A          327 DAGGLVN  333 (373)
T ss_dssp             CHHHHHT
T ss_pred             CHHHHhh
Confidence            9999975

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=4.8e-35  Score=298.25  Aligned_cols=225  Identities=10%  Similarity=0.008  Sum_probs=172.5

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccccc-----hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERKK-----KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~-----~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+.. +++.||||.+.....     .+.+.+|++.+.+++||||+++++++...+..|+||||+++
T Consensus        36 ~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g  115 (286)
T 3uqc_A           36 LIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAEWIRG  115 (286)
T ss_dssp             EEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCCE
T ss_pred             EEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEEEecCC
Confidence            468999999999999975 488999999976522     25678899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCccc
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFI  491 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~~~  491 (640)
                      ++|.+++...       ....+..+++.|++.||+|||+.   +|+||||||+|||++.++.+||+++|           
T Consensus       116 ~~L~~~l~~~-------~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~-----------  174 (286)
T 3uqc_A          116 GSLQEVADTS-------PSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPA-----------  174 (286)
T ss_dssp             EEHHHHHTTC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCC-----------
T ss_pred             CCHHHHHhcC-------CChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEecc-----------
Confidence            9999999532       23446788999999999999954   59999999999999999999998543           


Q ss_pred             cccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcch-HHHHHHhhcccccccccchhhccC-hH
Q 006559          492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGI-VKWVQMMGQDESAWEVFDFELIMD-KE  569 (640)
Q Consensus       492 ~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~-~~  569 (640)
                         |++|              ++.++|||||||++|||+||+.||....... ..         ............. ..
T Consensus       175 ---~~~~--------------~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~---------~~~~~~~~~~~~~~~~  228 (286)
T 3uqc_A          175 ---TMPD--------------ANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLA---------PAERDTAGQPIEPADI  228 (286)
T ss_dssp             ---CCTT--------------CCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSE---------ECCBCTTSCBCCHHHH
T ss_pred             ---ccCC--------------CCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhH---------HHHHHhccCCCChhhc
Confidence               3332              3578999999999999999999997533210 00         0000000000000 00


Q ss_pred             HHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 006559          570 MEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGS  610 (640)
Q Consensus       570 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~  610 (640)
                      ......++.+++.+||+.||++| |+.|+++.|+++.....
T Consensus       229 ~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~~  268 (286)
T 3uqc_A          229 DRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAVAD  268 (286)
T ss_dssp             CTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC---
T ss_pred             ccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccCC
Confidence            01122346778888999999999 99999999999886543

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=5.9e-36  Score=310.27  Aligned_cols=230  Identities=17%  Similarity=0.326  Sum_probs=181.9

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEecccc--------chHHHHHHHHHHhccC--CCcccceeEEEEcCCeEEEE
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERK--------KKREVDEWLRVIGGLR--HSNIVSIRAYCNGKDELFLV  405 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~--------~~~~~~~e~~~l~~l~--H~niv~l~~~~~~~~~~~lV  405 (640)
                      ..+.||+|+||.||+|+. .+++.||||.+....        ..+.+..|+.++++++  |+||+++++++...+..++|
T Consensus        47 ~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~~~~lv  126 (320)
T 3a99_A           47 VGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLI  126 (320)
T ss_dssp             EEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEEE
T ss_pred             EEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCCcEEEE
Confidence            357899999999999985 568889999987542        1234567888888886  59999999999999999999


Q ss_pred             EeccCC-CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC-CCCCeEEccCCccc
Q 006559          406 YDYLPH-GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIGVHQ  483 (640)
Q Consensus       406 ~Ey~~~-gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~-~~~~~kl~DfGl~~  483 (640)
                      |||+.. ++|.+++....     .+++..+..++.|++.||+|||+   .+|+||||||+|||++ +++.+||+|||+++
T Consensus       127 ~e~~~~~~~L~~~l~~~~-----~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~  198 (320)
T 3a99_A          127 LERPEPVQDLFDFITERG-----ALQEELARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGA  198 (320)
T ss_dssp             EECCSSEEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             EEcCCCCccHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHH---CCcEeCCCCHHHEEEeCCCCCEEEeeCcccc
Confidence            999976 89999997543     58899999999999999999995   4599999999999999 78999999999988


Q ss_pred             ccCCC----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccc
Q 006559          484 LFHTP----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       484 ~~~~~----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  559 (640)
                      .....    ..++..|+|||++...      ..++.++|||||||++|||+||+.||....    ....   ..      
T Consensus       199 ~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~~Di~slG~il~el~~g~~pf~~~~----~~~~---~~------  259 (320)
T 3a99_A          199 LLKDTVYTDFDGTRVYSPPEWIRYH------RYHGRSAAVWSLGILLYDMVCGDIPFEHDE----EIIR---GQ------  259 (320)
T ss_dssp             ECCSSCBCCCCSCGGGSCHHHHHHS------CBCHHHHHHHHHHHHHHHHHHSSCSCCSHH----HHHH---CC------
T ss_pred             ccccccccCCCCCccCCChHHhccC------CCCCccchHHhHHHHHHHHHHCCCCCCChh----hhhc---cc------
Confidence            76532    3468899999975321      223578999999999999999999996421    1000   00      


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                          .......   ..++.+++.+||+.||++|||+.++++
T Consensus       260 ----~~~~~~~---~~~~~~li~~~l~~dp~~Rps~~~ll~  293 (320)
T 3a99_A          260 ----VFFRQRV---SSECQHLIRWCLALRPSDRPTFEEIQN  293 (320)
T ss_dssp             ----CCCSSCC---CHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ----ccccccC---CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                0001111   124667788899999999999999875

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=7.1e-35  Score=299.07  Aligned_cols=223  Identities=15%  Similarity=0.204  Sum_probs=169.3

Q ss_pred             ccccccCcceEEEEEe-CCCcEEEEEEeccccchHHHHHHHHHH-hccCCCcccceeEEEEc----CCeEEEEEeccCCC
Q 006559          339 ELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVI-GGLRHSNIVSIRAYCNG----KDELFLVYDYLPHG  412 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~~~~~e~~~l-~~l~H~niv~l~~~~~~----~~~~~lV~Ey~~~g  412 (640)
                      ++||+|+||.||+++. .+++.||||.++..   ..+.+|+.++ +.++||||+++++++..    ....++||||+++|
T Consensus        24 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~  100 (299)
T 3m2w_A           24 QVLGLGINGKVLQIFNKRTQEKFALKMLQDC---PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGG  100 (299)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECS---HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEECCCCSC
T ss_pred             cccccCCCeEEEEEEEcCCCcEEEEEEeccc---HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEeecCCC
Confidence            6799999999999996 56889999998643   4456677766 56699999999999876    66799999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC---CCCeEEccCCcccccCCCc
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ---LGNACISDIGVHQLFHTPF  489 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~---~~~~kl~DfGl~~~~~~~~  489 (640)
                      +|.+++.....   ..+++..+..++.|++.||+|||+   .+|+||||||+|||++.   ++.+||+|||+++....  
T Consensus       101 ~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~--  172 (299)
T 3m2w_A          101 ELFSRIQDRGD---QAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTG--  172 (299)
T ss_dssp             BHHHHHHHCTT---CCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECTT--
T ss_pred             cHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEecCCCCCcEEEecccccccccc--
Confidence            99999986532   258999999999999999999995   45999999999999998   78999999999865431  


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC-h
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD-K  568 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~  568 (640)
                                           ..++.++|||||||++|||+||+.||.........  .     .....+........ .
T Consensus       173 ---------------------~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~--~-----~~~~~~~~~~~~~~~~  224 (299)
T 3m2w_A          173 ---------------------EKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS--P-----GMKTRIRMGQYEFPNP  224 (299)
T ss_dssp             ---------------------CGGGGHHHHHHHHHHHHHHHHSSCSCCC---------C-----CSCCSSCTTCCSSCHH
T ss_pred             ---------------------ccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhh--H-----HHHHHHhhccccCCch
Confidence                                 23457899999999999999999999743211100  0     00000000000011 0


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .......++.+++..||+.||++|||+.|+++
T Consensus       225 ~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~  256 (299)
T 3m2w_A          225 EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN  256 (299)
T ss_dssp             HHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             hcccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence            11122345777888899999999999999986

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=306.39  Aligned_cols=230  Identities=20%  Similarity=0.324  Sum_probs=176.3

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccccc--------hHHHHHHHHHHhcc----CCCcccceeEEEEcCCeEE
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERKK--------KREVDEWLRVIGGL----RHSNIVSIRAYCNGKDELF  403 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~--------~~~~~~e~~~l~~l----~H~niv~l~~~~~~~~~~~  403 (640)
                      ..+.||+|+||.||+|+. .+++.||||.+.....        ...+..|+.++.++    +||||+++++++...+..+
T Consensus        35 ~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~~~~~~  114 (312)
T 2iwi_A           35 LGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQEGFM  114 (312)
T ss_dssp             EEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-----CE
T ss_pred             EeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEecCCeEE
Confidence            357899999999999985 5688999999965421        12344677777777    8999999999999889999


Q ss_pred             EEEec-cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC-CCCCeEEccCCc
Q 006559          404 LVYDY-LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIGV  481 (640)
Q Consensus       404 lV~Ey-~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~-~~~~~kl~DfGl  481 (640)
                      +|||| +++++|.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+||+++ .++.+||+|||+
T Consensus       115 ~v~e~~~~~~~L~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl~dfg~  186 (312)
T 2iwi_A          115 LVLERPLPAQDLFDYITEKG-----PLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILIDLRRGCAKLIDFGS  186 (312)
T ss_dssp             EEEECCSSEEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEEETTTTEEEECCCSS
T ss_pred             EEEEecCCCCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEEeCCCCeEEEEEcch
Confidence            99999 78999999997643     589999999999999999999954   599999999999999 889999999999


Q ss_pred             ccccCC----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccc
Q 006559          482 HQLFHT----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAW  557 (640)
Q Consensus       482 ~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  557 (640)
                      ++....    ...++..|+|||++..      ....+.++|||||||++|||+||+.||....    ....   .     
T Consensus       187 ~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~~Di~slG~il~~l~~g~~pf~~~~----~~~~---~-----  248 (312)
T 2iwi_A          187 GALLHDEPYTDFDGTRVYSPPEWISR------HQYHALPATVWSLGILLYDMVCGDIPFERDQ----EILE---A-----  248 (312)
T ss_dssp             CEECCSSCBCCCCSCTTTSCHHHHHH------SCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH----HHHH---T-----
T ss_pred             hhhcccCcccccCCcccccCceeeec------CCCCCccchHHHHHHHHHHHHHCCCCCCChH----HHhh---h-----
Confidence            887643    2345788999997532      1222458999999999999999999996421    1100   0     


Q ss_pred             cccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       558 ~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                           ........   ..++.+++.+||+.||++||++.|+++
T Consensus       249 -----~~~~~~~~---~~~~~~li~~~l~~~p~~Rps~~e~l~  283 (312)
T 2iwi_A          249 -----ELHFPAHV---SPDCCALIRRCLAPKPSSRPSLEEILL  283 (312)
T ss_dssp             -----CCCCCTTS---CHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             -----ccCCcccC---CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                 00011111   224667788899999999999999975

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=3.1e-35  Score=327.48  Aligned_cols=259  Identities=24%  Similarity=0.289  Sum_probs=190.2

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEc------CCeEEEEE
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNG------KDELFLVY  406 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~------~~~~~lV~  406 (640)
                      ..+.||+|+||.||+|.. .+|..||||++...   ...+.+.+|++++++++||||+++++++..      .+..++||
T Consensus        18 i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~~LVm   97 (676)
T 3qa8_A           18 MKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAM   97 (676)
T ss_dssp             CCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSCCCEE
T ss_pred             EEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeEEEEE
Confidence            357899999999999986 46889999998754   234567889999999999999999998765      66789999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC---eEEccCCccc
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN---ACISDIGVHQ  483 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~---~kl~DfGl~~  483 (640)
                      ||+++|+|.+++.....  ...+++..+..++.|++.||+|||+   .+|+||||||+||+++.++.   +||+|||+++
T Consensus        98 Ey~~ggsL~~~L~~~~~--~~~lse~~i~~I~~QLl~aL~yLHs---~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~  172 (676)
T 3qa8_A           98 EYCEGGDLRKYLNQFEN--CCGLKEGPIRTLLSDISSALRYLHE---NRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAK  172 (676)
T ss_dssp             ECCSSCBHHHHHHSSSC--TTCCCSSHHHHHHHHHHHHHHHHHH---TTBCCCCCCSTTEEEECCSSSCEEEECSCCCCC
T ss_pred             EeCCCCCHHHHHHhccc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHeEeecCCCceeEEEccccccc
Confidence            99999999999986432  2247888899999999999999995   45999999999999997665   9999999998


Q ss_pred             ccCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccc--
Q 006559          484 LFHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESA--  556 (640)
Q Consensus       484 ~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~--  556 (640)
                      ....     ...++..|+|||++       ....++.++|||||||++|||+||+.||.... ....|..........  
T Consensus       173 ~~~~~~~~~~~~gt~~Y~APE~l-------~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~-~~~~~~~~i~~~~~~~~  244 (676)
T 3qa8_A          173 ELDQGELCTEFVGTLQYLAPELL-------EQKKYTVTVDYWSFGTLAFECITGFRPFLPNW-QPVQWHGKVREKSNEHI  244 (676)
T ss_dssp             BTTSCCCCCCCCSCCTTCSSCSS-------CCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSC-HHHHSSTTCC------C
T ss_pred             ccccccccccccCCcccCChHHh-------ccCCCCchhHHHHHHHHHHHHHHCCCCCCccc-chhhhhhhhhcccchhh
Confidence            7643     23568899999964       34567889999999999999999999996432 222222211111000  


Q ss_pred             --ccc------cchhhccCh-HHHHHHHHHHHHHHHccCCCCCCCCCHHH-----HHHHHHHhhcc
Q 006559          557 --WEV------FDFELIMDK-EMEEEMRALLQVALLCLAPLPKDRPNMSI-----VHRMIEDIRTK  608 (640)
Q Consensus       557 --~~~------~d~~~~~~~-~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~-----v~~~L~~i~~~  608 (640)
                        ...      +........ ........+.+++..||+.||++|||+.+     ..+.++++...
T Consensus       245 ~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~iL~~  310 (676)
T 3qa8_A          245 VVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSILSL  310 (676)
T ss_dssp             CSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHHHCC
T ss_pred             hhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHHHhc
Confidence              000      000000000 01123345777888899999999999988     45667776654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.9e-34  Score=329.04  Aligned_cols=230  Identities=16%  Similarity=0.217  Sum_probs=180.3

Q ss_pred             hccccccCcceEEEEEeC--CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCe-----EEEEEe
Q 006559          338 AELLGKGCVGATYKVVLD--GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDE-----LFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~--~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~-----~~lV~E  407 (640)
                      .+.||+|+||.||+|+..  +++.||||.+....   ....+.+|++++++++||||+++++++...+.     .|+|||
T Consensus        85 ~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~~lv~E  164 (681)
T 2pzi_A           85 KGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVME  164 (681)
T ss_dssp             EEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEEEEEEE
T ss_pred             EEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCceeEEEEE
Confidence            567999999999999975  58899999986542   23467789999999999999999999987654     799999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      |+++++|.+++..       .++|..++.++.||+.||+|||+.   +||||||||+|||++.+ .+||+|||+++....
T Consensus       165 ~~~g~~L~~~~~~-------~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~  233 (681)
T 2pzi_A          165 YVGGQSLKRSKGQ-------KLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAVSRINS  233 (681)
T ss_dssp             CCCCEECC----C-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTTCEETTC
T ss_pred             eCCCCcHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEecccchhccc
Confidence            9999999987753       489999999999999999999954   59999999999999985 899999999987654


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                        ...+|..|+|||++..        ..+.++|||||||++|||++|..|+......           .    +.     
T Consensus       234 ~~~~~gt~~y~aPE~~~~--------~~~~~sDi~slG~~l~~l~~g~~~~~~~~~~-----------~----~~-----  285 (681)
T 2pzi_A          234 FGYLYGTPGFQAPEIVRT--------GPTVATDIYTVGRTLAALTLDLPTRNGRYVD-----------G----LP-----  285 (681)
T ss_dssp             CSCCCCCTTTSCTTHHHH--------CSCHHHHHHHHHHHHHHHHSCCCEETTEECS-----------S----CC-----
T ss_pred             CCccCCCccccCHHHHcC--------CCCCceehhhhHHHHHHHHhCCCCCcccccc-----------c----cc-----
Confidence              3457899999997532        2367999999999999999999887532100           0    00     


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCC-HHHHHHHHHHhh
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPN-MSIVHRMIEDIR  606 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs-~~~v~~~L~~i~  606 (640)
                      ...........+.+++.+||+.||++||+ +.++...+..+.
T Consensus       286 ~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~  327 (681)
T 2pzi_A          286 EDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVL  327 (681)
T ss_dssp             TTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             ccccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHH
Confidence            00011122345777888999999999995 666666666653

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=2.3e-33  Score=301.02  Aligned_cols=239  Identities=16%  Similarity=0.089  Sum_probs=168.8

Q ss_pred             hccccccCcceEEEEE-eCCCcEEEEEEeccc-----cchHHHHHHHHHHhccCC-Ccccce---------eEE------
Q 006559          338 AELLGKGCVGATYKVV-LDGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRH-SNIVSI---------RAY------  395 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H-~niv~l---------~~~------  395 (640)
                      .++||+|+||+||+|+ ..+|+.||||++...     ...+.+.+|+.+++.++| +|....         ...      
T Consensus        83 ~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (413)
T 3dzo_A           83 GTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQK  162 (413)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEEECCC-
T ss_pred             ecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhcccCCC
Confidence            5689999999999999 456899999998733     224668889999998887 322111         111      


Q ss_pred             ------EEc-----CCeEEEEEeccCCCCHHHhhccCC--CCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCC
Q 006559          396 ------CNG-----KDELFLVYDYLPHGSLHSLLHGSR--GPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLS  462 (640)
Q Consensus       396 ------~~~-----~~~~~lV~Ey~~~gsL~~~l~~~~--~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk  462 (640)
                            +..     ....+++|+++ .++|.+++....  .....++++..++.++.|+++||+|||+   .+|||||||
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~iiHrDiK  238 (413)
T 3dzo_A          163 KKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH---YGLVHTYLR  238 (413)
T ss_dssp             --------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH---TTEECSCCC
T ss_pred             CccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcc
Confidence                  111     22467777765 689999884110  0112358899999999999999999995   459999999


Q ss_pred             CCCeEECCCCCeEEccCCcccccCC---CccccccccCCccccCCC--Ccc-ccCCCCCccchHHHHHHHHHHHhCCCCC
Q 006559          463 SSNIVVDQLGNACISDIGVHQLFHT---PFFINDAYNAPELKFNNN--NNY-SQRKFWQRCDVYSFGVVLLEILTGKMAK  536 (640)
Q Consensus       463 ~~NILl~~~~~~kl~DfGl~~~~~~---~~~~~~~y~aPE~~~~~~--~~~-~~~~~~~k~DV~SfGvvl~el~tg~~p~  536 (640)
                      |+|||++.++.+||+|||+++....   ...+ ..|+|||++....  ... ....++.++|||||||++|||+||+.||
T Consensus       239 p~NILl~~~~~~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf  317 (413)
T 3dzo_A          239 PVDIVLDQRGGVFLTGFEHLVRDGASAVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPN  317 (413)
T ss_dssp             GGGEEECTTCCEEECCGGGCEETTEEECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cceEEEecCCeEEEEeccceeecCCccccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCC
Confidence            9999999999999999999876543   2345 8999999763211  000 3345778999999999999999999999


Q ss_pred             CCCCcchHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 006559          537 GDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVH  599 (640)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~  599 (640)
                      ......           .....++...    ...   ..++.+++..||+.||++||++.+++
T Consensus       318 ~~~~~~-----------~~~~~~~~~~----~~~---~~~~~~li~~~l~~dP~~Rpt~~~~l  362 (413)
T 3dzo_A          318 TDDAAL-----------GGSEWIFRSC----KNI---PQPVRALLEGFLRYPKEDRLLPLQAM  362 (413)
T ss_dssp             CTTGGG-----------SCSGGGGSSC----CCC---CHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred             CCcchh-----------hhHHHHHhhc----ccC---CHHHHHHHHHHccCChhhCcCHHHHH
Confidence            753211           0001111100    111   13467778889999999999977764

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.98  E-value=2.9e-33  Score=292.04  Aligned_cols=234  Identities=13%  Similarity=0.121  Sum_probs=171.6

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEecccc----------chHHHHHHHHHHhccC---------CCcccceeEEEE
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERK----------KKREVDEWLRVIGGLR---------HSNIVSIRAYCN  397 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~----------~~~~~~~e~~~l~~l~---------H~niv~l~~~~~  397 (640)
                      ..+.||+|+||+||+|+. +|+.||||++....          ..+.+.+|+++++.++         |||||++.+++.
T Consensus        24 ~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~~~~~  102 (336)
T 2vuw_A           24 RCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHC  102 (336)
T ss_dssp             TCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEEEEEE
T ss_pred             heeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhcceeE
Confidence            467899999999999998 67999999997542          1267888888888775         777777666542


Q ss_pred             -----------------c-------------CCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHH
Q 006559          398 -----------------G-------------KDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAF  447 (640)
Q Consensus       398 -----------------~-------------~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~y  447 (640)
                                       .             .+..|+||||+++|++.+.+...      .+++..+..++.|++.||+|
T Consensus       103 ~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~------~~~~~~~~~i~~qi~~aL~~  176 (336)
T 2vuw_A          103 VQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTK------LSSLATAKSILHQLTASLAV  176 (336)
T ss_dssp             EESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTT------CCCHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhc------CCCHHHHHHHHHHHHHHHHH
Confidence                             2             67899999999999777666432      47899999999999999999


Q ss_pred             hh-cCCCCCceecCCCCCCeEECCCC--------------------CeEEccCCcccccCCC-ccccccccCCccccCCC
Q 006559          448 LH-GYNKAHLFHGHLSSSNIVVDQLG--------------------NACISDIGVHQLFHTP-FFINDAYNAPELKFNNN  505 (640)
Q Consensus       448 LH-~~~~~~ivHrdlk~~NILl~~~~--------------------~~kl~DfGl~~~~~~~-~~~~~~y~aPE~~~~~~  505 (640)
                      || +.+   |+||||||+|||++.++                    .+||+|||+++..... ..+|..|+|||++.+. 
T Consensus       177 lH~~~~---ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~~~~gt~~y~aPE~~~g~-  252 (336)
T 2vuw_A          177 AEASLR---FEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGD-  252 (336)
T ss_dssp             HHHHHC---CBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETTEEECCCCTTCSGGGCCC-
T ss_pred             HHHhCC---EeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCCcEEEeecccChhhhcCC-
Confidence            99 655   99999999999999887                    8999999999877543 4578999999976432 


Q ss_pred             CccccCCCCCccchHHHHHH-HHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHc
Q 006559          506 NNYSQRKFWQRCDVYSFGVV-LLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLC  584 (640)
Q Consensus       506 ~~~~~~~~~~k~DV~SfGvv-l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~C  584 (640)
                             .+.++||||++++ .+++++|..||..     ..|........ ....................++.+++.+|
T Consensus       253 -------~~~~~Diwsl~~~~~~~~~~g~~p~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~dli~~~  319 (336)
T 2vuw_A          253 -------GDYQFDIYRLMKKENNNRWGEYHPYSN-----VLWLHYLTDKM-LKQMTFKTKCNTPAMKQIKRKIQEFHRTM  319 (336)
T ss_dssp             -------SSHHHHHHHHHHHHHTTCTTSCCTHHH-----HHHHHHHHHHH-HHTCCCSSCCCSHHHHHHHHHHHHHHHHG
T ss_pred             -------CccceehhhhhCCCCcccccccCCCcc-----hhhhhHHHHhh-hhhhccCcccchhhhhhcCHHHHHHHHHH
Confidence                   2578999998777 7788899999842     22322111100 00000000001122234556678888899


Q ss_pred             cCCCCCCCCCHHHHH
Q 006559          585 LAPLPKDRPNMSIVH  599 (640)
Q Consensus       585 l~~~P~~RPs~~~v~  599 (640)
                      |+.|     |+.|++
T Consensus       320 L~~d-----sa~e~l  329 (336)
T 2vuw_A          320 LNFS-----SATDLL  329 (336)
T ss_dssp             GGSS-----SHHHHH
T ss_pred             hccC-----CHHHHH
Confidence            9976     888776

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.94  E-value=4.4e-28  Score=269.22  Aligned_cols=176  Identities=17%  Similarity=0.067  Sum_probs=123.9

Q ss_pred             cccccCcceEEEEE-eCCCcEEEEEEeccc------------cchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEE
Q 006559          340 LLGKGCVGATYKVV-LDGGDVVVVKRIRER------------KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLV  405 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~-~~~~~~vavK~l~~~------------~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV  405 (640)
                      ..+.|++|.++.++ .--|+.++||.+...            ...+++.+|+++|+++ .|+||+++++++.+++..|||
T Consensus       241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV  320 (569)
T 4azs_A          241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV  320 (569)
T ss_dssp             C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred             ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence            46677777766654 345888999998643            1235688999999999 699999999999999999999


Q ss_pred             EeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccccc
Q 006559          406 YDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF  485 (640)
Q Consensus       406 ~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~  485 (640)
                      |||++||+|.++|....     +++..   +|+.||+.||+|+|+   .+||||||||+|||++++|.+||+|||+++..
T Consensus       321 MEyv~G~~L~d~i~~~~-----~l~~~---~I~~QIl~AL~ylH~---~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~  389 (569)
T 4azs_A          321 MEKLPGRLLSDMLAAGE-----EIDRE---KILGSLLRSLAALEK---QGFWHDDVRPWNVMVDARQHARLIDFGSIVTT  389 (569)
T ss_dssp             EECCCSEEHHHHHHTTC-----CCCHH---HHHHHHHHHHHHHHH---TTCEESCCCGGGEEECTTSCEEECCCTTEESC
T ss_pred             EecCCCCcHHHHHHhCC-----CCCHH---HHHHHHHHHHHHHHH---CCceeccCchHhEEECCCCCEEEeecccCeeC
Confidence            99999999999998653     45543   488999999999995   45999999999999999999999999999876


Q ss_pred             CCC------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCC
Q 006559          486 HTP------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM  534 (640)
Q Consensus       486 ~~~------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~  534 (640)
                      ...      .++|+.|+|||++.+        .+..++|+||+|++++++.++..
T Consensus       390 ~~~~~~~~t~vGTp~YmAPE~l~g--------~~~~~~d~~s~g~~~~~l~~~~~  436 (569)
T 4azs_A          390 PQDCSWPTNLVQSFFVFVNELFAE--------NKSWNGFWRSAPVHPFNLPQPWS  436 (569)
T ss_dssp             C---CCSHHHHHHHHHHHHHHC-------------------------CCCCTTHH
T ss_pred             CCCCccccCceechhhccHHHhCC--------CCCCcccccccccchhhhccccc
Confidence            432      346889999997532        34567999999999888766543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=6.1e-27  Score=241.56  Aligned_cols=188  Identities=30%  Similarity=0.526  Sum_probs=168.0

Q ss_pred             CChhhHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCceEecCCC--CcEEEEEeCCCCCCC---CchhccCCCCCCEE
Q 006559           22 SPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPST--HRVIKLVLEDLDLTG---PAEVLSRLTQLRLL   96 (640)
Q Consensus        22 ~~~~~~~~ll~~k~~~~~~~~~~~sW~~~~~~c~~~w~gv~C~~~~--~~v~~l~l~~~~l~g---~~~~l~~l~~L~~L   96 (640)
                      +...|.+||++||+++.++. .+.+|+.+.+||.+.|.||+|+..+  ++|+.|+|.++.++|   .++.+.++++|++|
T Consensus         3 c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L   81 (313)
T 1ogq_A            3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL   81 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEE
T ss_pred             CCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCee
Confidence            45689999999999996554 5678976677774459999998765  799999999999998   34789999999999


Q ss_pred             eCCC-CcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCc
Q 006559           97 SLKN-NLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNR  174 (640)
Q Consensus        97 ~Ls~-N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~  174 (640)
                      +|++ |.+.+..| .+..+++|++|+|++|.+++.+|..|.++++|++|+|++|.+++.+| ..+..+++|++|+|++|+
T Consensus        82 ~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~  160 (313)
T 1ogq_A           82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC-GGGGGCTTCCEEECCSSC
T ss_pred             eCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC-hHHhcCCCCCeEECcCCc
Confidence            9995 99987655 79999999999999999999999999999999999999999999898 789999999999999999


Q ss_pred             ceecccCCcCCCC-CCcEEEcccCcCcccCCcccCCCC
Q 006559          175 FTGTLYSVNSSSR-SILDFNVSNNQLSGQIPAWMSPFG  211 (640)
Q Consensus       175 l~g~~~~~~~~~~-~L~~l~ls~N~l~g~ip~~~~~~~  211 (640)
                      ++|.+|..+..+. +|+.|++++|+++|.+|..+..+.
T Consensus       161 l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~  198 (313)
T 1ogq_A          161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN  198 (313)
T ss_dssp             CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred             ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence            9999999998888 999999999999999998876553

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.92  E-value=1.3e-25  Score=247.97  Aligned_cols=175  Identities=15%  Similarity=0.181  Sum_probs=137.2

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEecccc----------chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERK----------KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~----------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      .++||+|+||.||+|... +..+++|+...+.          ..+.+.+|++++++++||||+++..++...+..|+|||
T Consensus       341 ~~~LG~G~fg~Vy~~~~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVmE  419 (540)
T 3en9_A          341 EHLIGKGAEADIKRDSYL-DFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMMS  419 (540)
T ss_dssp             -------CCEEEEEEECS-SCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEEE
T ss_pred             CCEEeeCCCEEEEEEEEC-CCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEEE
Confidence            568999999999999544 5778888764331          12347889999999999999977777777778899999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      |+++|+|.+++..             +..++.|+++||+|||+   .+|+||||||+|||++.  .+||+|||+++....
T Consensus       420 ~~~ggsL~~~l~~-------------~~~i~~qi~~aL~~LH~---~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~  481 (540)
T 3en9_A          420 YINGKLAKDVIED-------------NLDIAYKIGEIVGKLHK---NDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNL  481 (540)
T ss_dssp             CCCSEEHHHHSTT-------------CTHHHHHHHHHHHHHHH---TTEECTTCCTTSEEESS--SEEECCCTTCEECCC
T ss_pred             CCCCCCHHHHHHH-------------HHHHHHHHHHHHHHHHH---CcCccCCCCHHHEEECC--eEEEEECccCEECCC
Confidence            9999999999874             35799999999999995   45999999999999999  999999999988754


Q ss_pred             -------------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCC
Q 006559          488 -------------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAK  536 (640)
Q Consensus       488 -------------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~  536 (640)
                                   ...+|..|+|||++..     ....|+.++|+||..+-..+-+.++.+|
T Consensus       482 ~~~~~~~~~~~~~~~~GT~~y~APEv~~~-----~~~~Y~~~~d~ws~vl~~l~~v~~r~rY  538 (540)
T 3en9_A          482 DEDKAVDLIVFKKAVLSTHHEKFDEIWER-----FLEGYKSVYDRWEIILELMKDVERRARY  538 (540)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGHHHHHHH-----HHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred             ccccccchhhhhhhhcCCCCcCCHHHHHH-----HHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence                         2345889999997632     1234667889999999988888877665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=2.4e-23  Score=240.76  Aligned_cols=177  Identities=28%  Similarity=0.376  Sum_probs=110.5

Q ss_pred             CCChhhHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCceEecCCCCcEEEEEeCCCCCCCC----chhccC-------
Q 006559           21 NSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGP----AEVLSR-------   89 (640)
Q Consensus        21 ~~~~~~~~~ll~~k~~~~~~~~~~~sW~~~~~~c~~~w~gv~C~~~~~~v~~l~l~~~~l~g~----~~~l~~-------   89 (640)
                      +....|++||++||+++.++. .+++|+.++|||  +|.||+|+  +++|+.|+|++.++.|.    .+.+.+       
T Consensus         8 ~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C--~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l   82 (768)
T 3rgz_A            8 QSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPC--TFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL   82 (768)
T ss_dssp             CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGG--GSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred             cCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCc--CCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccccc
Confidence            345789999999999997666 778997566655  89999999  58999999999999885    233444       


Q ss_pred             ----------------CCCCCEEeCCCCcCCCCCC---CCCCCCCCcEEEcccccccccCCccC-CCCCCCCEEEcccCC
Q 006559           90 ----------------LTQLRLLSLKNNLLSSSNL---NLSSWPHLKHLYLSHNRFTGTFPSGV-SSLRHLRRVDLSHNA  149 (640)
Q Consensus        90 ----------------l~~L~~L~Ls~N~l~~~~~---~~~~l~~L~~L~Ls~N~l~g~~p~~~-~~l~~L~~L~Ls~N~  149 (640)
                                      +++|++|+|++|.++|..+   .++++++|++|+|++|.+++.+|..+ .++++|++|||++|+
T Consensus        83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  162 (768)
T 3rgz_A           83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS  162 (768)
T ss_dssp             ECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred             CCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence                            4555555555555544222   34445555555555555554444433 445555555555555


Q ss_pred             CCCCCCchh---cCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCc
Q 006559          150 YEGEIPMTE---LTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPA  205 (640)
Q Consensus       150 l~g~~p~~~---~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~  205 (640)
                      +++..| ..   +.++++|++|+|++|.+++.++.  ..+++|+.|++++|++++.+|.
T Consensus       163 l~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~  218 (768)
T 3rgz_A          163 ISGANV-VGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF  218 (768)
T ss_dssp             CEEETH-HHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB
T ss_pred             cCCcCC-hhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc
Confidence            554433 22   44555555555555555554443  4466677777777777766665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.88  E-value=2.5e-23  Score=240.33  Aligned_cols=181  Identities=23%  Similarity=0.349  Sum_probs=153.3

Q ss_pred             hhhHHHHHHhhhcCCCCCCCCCCCCCCC-----CCCCCCC------------CceEecCCCCcEEEEEeCCCCCCCCc-h
Q 006559           24 YSDISTLLSFKASVTGSSDSLSSWVNST-----DPCFDSW------------RGVTCNPSTHRVIKLVLEDLDLTGPA-E   85 (640)
Q Consensus        24 ~~~~~~ll~~k~~~~~~~~~~~sW~~~~-----~~c~~~w------------~gv~C~~~~~~v~~l~l~~~~l~g~~-~   85 (640)
                      ..|..||++||+++.++     +|+.+.     +||+|+|            .||+|+. .+||+.|+|++++++|.. +
T Consensus       268 ~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~  341 (876)
T 4ecn_A          268 IKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPD  341 (876)
T ss_dssp             HHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECG
T ss_pred             hHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCch
Confidence            56999999999999654     675443     5655699            9999987 489999999999999875 7


Q ss_pred             hccCCCCCCEEeC-CCCcCCCC----------------------------------------------------------
Q 006559           86 VLSRLTQLRLLSL-KNNLLSSS----------------------------------------------------------  106 (640)
Q Consensus        86 ~l~~l~~L~~L~L-s~N~l~~~----------------------------------------------------------  106 (640)
                      .+++|++|+.|+| ++|.++|.                                                          
T Consensus       342 ~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~  421 (876)
T 4ecn_A          342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS  421 (876)
T ss_dssp             GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCC
T ss_pred             HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccc
Confidence            8999999999999 88865432                                                          


Q ss_pred             -------------------CCCCCCCCCCcEEEcccccccc-----------------cCCccCC--CCCCCCEEEcccC
Q 006559          107 -------------------NLNLSSWPHLKHLYLSHNRFTG-----------------TFPSGVS--SLRHLRRVDLSHN  148 (640)
Q Consensus       107 -------------------~~~~~~l~~L~~L~Ls~N~l~g-----------------~~p~~~~--~l~~L~~L~Ls~N  148 (640)
                                         |..++++++|++|+|++|.|+|                 .+|..++  ++++|+.|+|++|
T Consensus       422 ~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N  501 (876)
T 4ecn_A          422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC  501 (876)
T ss_dssp             CCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC
T ss_pred             ccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC
Confidence                               2357788999999999999999                 4999988  9999999999999


Q ss_pred             CCCCCCCchhcCCCCCCcEEEccCCc-cee-cccCCcCC-------CCCCcEEEcccCcCcccCCc--ccCCCCC
Q 006559          149 AYEGEIPMTELTRLPNLLTLRLEDNR-FTG-TLYSVNSS-------SRSILDFNVSNNQLSGQIPA--WMSPFGG  212 (640)
Q Consensus       149 ~l~g~~p~~~~~~l~~L~~L~L~~N~-l~g-~~~~~~~~-------~~~L~~l~ls~N~l~g~ip~--~~~~~~~  212 (640)
                      ++.|.+| ..+.++++|+.|+|++|+ |+| .+|..+..       +++|+.|+|++|+|+ .+|.  .+..+..
T Consensus       502 ~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~  574 (876)
T 4ecn_A          502 PNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK  574 (876)
T ss_dssp             TTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred             CCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence            9999999 789999999999999998 998 78865544       449999999999999 8888  6765543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.87  E-value=6.6e-23  Score=231.88  Aligned_cols=184  Identities=21%  Similarity=0.334  Sum_probs=155.7

Q ss_pred             hhhHHHHHHhhhcCCCCCCC--------CCCCCCCCCCCCCCC---CceEecCCCCcEEEEEeCCCCCCCCc-hhccCCC
Q 006559           24 YSDISTLLSFKASVTGSSDS--------LSSWVNSTDPCFDSW---RGVTCNPSTHRVIKLVLEDLDLTGPA-EVLSRLT   91 (640)
Q Consensus        24 ~~~~~~ll~~k~~~~~~~~~--------~~sW~~~~~~c~~~w---~gv~C~~~~~~v~~l~l~~~~l~g~~-~~l~~l~   91 (640)
                      ..|+.||.+++.++.++.+.        ..+|+.+.++|  .|   .||+|+.. +||+.|+|++++++|.. +.+++|+
T Consensus        29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c--~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~  105 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELD--MWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT  105 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGG--GTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcc--cccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence            46899999999998654332        23797666665  89   99999876 89999999999999865 7899999


Q ss_pred             CCCEEeCCCCcC--------------------------------------------------------------------
Q 006559           92 QLRLLSLKNNLL--------------------------------------------------------------------  103 (640)
Q Consensus        92 ~L~~L~Ls~N~l--------------------------------------------------------------------  103 (640)
                      +|+.|+|++|.+                                                                    
T Consensus       106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~  185 (636)
T 4eco_A          106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD  185 (636)
T ss_dssp             TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred             cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence            999999999954                                                                    


Q ss_pred             ----------CCCCCCCCCCCCCcEEEccccccccc-----------------CCccCC--CCCCCCEEEcccCCCCCCC
Q 006559          104 ----------SSSNLNLSSWPHLKHLYLSHNRFTGT-----------------FPSGVS--SLRHLRRVDLSHNAYEGEI  154 (640)
Q Consensus       104 ----------~~~~~~~~~l~~L~~L~Ls~N~l~g~-----------------~p~~~~--~l~~L~~L~Ls~N~l~g~~  154 (640)
                                ++.|..++++++|++|+|++|.|+|.                 +|..++  ++++|++|+|++|++.|.+
T Consensus       186 l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~  265 (636)
T 4eco_A          186 TQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL  265 (636)
T ss_dssp             TTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSC
T ss_pred             hhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccC
Confidence                      23334578899999999999999996                 999999  9999999999999999999


Q ss_pred             CchhcCCCCCCcEEEccCCc-cee-cccCCcCCC------CCCcEEEcccCcCcccCCc--ccCCCCC
Q 006559          155 PMTELTRLPNLLTLRLEDNR-FTG-TLYSVNSSS------RSILDFNVSNNQLSGQIPA--WMSPFGG  212 (640)
Q Consensus       155 p~~~~~~l~~L~~L~L~~N~-l~g-~~~~~~~~~------~~L~~l~ls~N~l~g~ip~--~~~~~~~  212 (640)
                      | ..++++++|++|+|++|+ ++| .+|..+..+      ++|+.|++++|+++ .+|.  .+..+..
T Consensus       266 p-~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~  331 (636)
T 4eco_A          266 P-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKK  331 (636)
T ss_dssp             C-TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTT
T ss_pred             h-HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCC
Confidence            9 789999999999999998 999 888877665      89999999999999 8888  6765543

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.85  E-value=1.3e-21  Score=198.19  Aligned_cols=137  Identities=15%  Similarity=0.134  Sum_probs=111.1

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEecccc--------------------chHHHHHHHHHHhccCCCcccceeEEEE
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERK--------------------KKREVDEWLRVIGGLRHSNIVSIRAYCN  397 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~--------------------~~~~~~~e~~~l~~l~H~niv~l~~~~~  397 (640)
                      .+.||+|+||.||+|+..+|+.||||.++...                    ....+.+|++++++++  | +++.+++.
T Consensus        95 ~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-~~v~~~~~  171 (282)
T 1zar_A           95 GKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-LAVPKVYA  171 (282)
T ss_dssp             EEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-SSSCCEEE
T ss_pred             cCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-CCcCeEEe
Confidence            37899999999999999779999999996431                    2345788999999998  5 66666554


Q ss_pred             cCCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEc
Q 006559          398 GKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACIS  477 (640)
Q Consensus       398 ~~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~  477 (640)
                      . +..|+||||+++|+|.+ +...           ....++.|++.||+|||+   .+|+||||||+|||++ ++.+||+
T Consensus       172 ~-~~~~lvmE~~~g~~L~~-l~~~-----------~~~~i~~qi~~~l~~lH~---~giiHrDlkp~NILl~-~~~vkl~  234 (282)
T 1zar_A          172 W-EGNAVLMELIDAKELYR-VRVE-----------NPDEVLDMILEEVAKFYH---RGIVHGDLSQYNVLVS-EEGIWII  234 (282)
T ss_dssp             E-ETTEEEEECCCCEEGGG-CCCS-----------CHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEE-TTEEEEC
T ss_pred             c-cceEEEEEecCCCcHHH-cchh-----------hHHHHHHHHHHHHHHHHH---CCCEeCCCCHHHEEEE-CCcEEEE
Confidence            3 55699999999999998 5321           234699999999999995   4599999999999999 9999999


Q ss_pred             cCCcccccCCCccccccccCCccc
Q 006559          478 DIGVHQLFHTPFFINDAYNAPELK  501 (640)
Q Consensus       478 DfGl~~~~~~~~~~~~~y~aPE~~  501 (640)
                      |||+++..       ..++|||++
T Consensus       235 DFG~a~~~-------~~~~a~e~l  251 (282)
T 1zar_A          235 DFPQSVEV-------GEEGWREIL  251 (282)
T ss_dssp             CCTTCEET-------TSTTHHHHH
T ss_pred             ECCCCeEC-------CCCCHHHHH
Confidence            99999754       346788864

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.84  E-value=1.9e-21  Score=224.78  Aligned_cols=120  Identities=33%  Similarity=0.550  Sum_probs=110.2

Q ss_pred             CCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCc
Q 006559          111 SSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSIL  190 (640)
Q Consensus       111 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~  190 (640)
                      ..+++|+.|||++|+|+|.+|..|+++++|+.|+|++|+++|.+| ..++++++|+.|||++|+++|.+|..+..+++|+
T Consensus       629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~  707 (768)
T 3rgz_A          629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP-DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT  707 (768)
T ss_dssp             SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred             hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC-hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence            345778999999999999999999999999999999999999999 7899999999999999999999999999999999


Q ss_pred             EEEcccCcCcccCCcc--cCCCCCCCCCCCcccCCCCCCCCCCC
Q 006559          191 DFNVSNNQLSGQIPAW--MSPFGGSSFAGNKNLCGRPLPSDCSN  232 (640)
Q Consensus       191 ~l~ls~N~l~g~ip~~--~~~~~~~~~~gn~~lcg~~~~~~c~~  232 (640)
                      .|||++|+|+|.||..  +.++...+|.||+++||.|++ .|..
T Consensus       708 ~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~  750 (768)
T 3rgz_A          708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDP  750 (768)
T ss_dssp             EEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCS
T ss_pred             EEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCC
Confidence            9999999999999974  677888899999999999987 5854

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.84  E-value=1.5e-21  Score=202.48  Aligned_cols=184  Identities=19%  Similarity=0.259  Sum_probs=151.4

Q ss_pred             CChhhHHHHHHhhhcCC-CCCCCCCCCC----CCCCCCCCCCCceEecC--------CCCcEEEEEeCCCCCCCCchhcc
Q 006559           22 SPYSDISTLLSFKASVT-GSSDSLSSWV----NSTDPCFDSWRGVTCNP--------STHRVIKLVLEDLDLTGPAEVLS   88 (640)
Q Consensus        22 ~~~~~~~~ll~~k~~~~-~~~~~~~sW~----~~~~~c~~~w~gv~C~~--------~~~~v~~l~l~~~~l~g~~~~l~   88 (640)
                      ...+|..+|++||..+. ++.....+|.    ...++|  .|.|+.|+.        ...+|+.|+|+++.++..++.+.
T Consensus        24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~--~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l~  101 (328)
T 4fcg_A           24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE--TRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAF  101 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSC--CSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCCSCGG
T ss_pred             cCchHHHHHHHHHHhccCCchhhhhhhccccccccccc--ccCCcchhhhHHHHhcccccceeEEEccCCCchhcChhhh
Confidence            34678999999999883 4433345783    233344  899999952        34689999999999997777788


Q ss_pred             CCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcC--------
Q 006559           89 RLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELT--------  160 (640)
Q Consensus        89 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~--------  160 (640)
                      .+++|++|+|++|.++..+..+..+++|++|+|++|.|+ .+|..++++++|++|+|++|++.+.+| ..+.        
T Consensus       102 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p-~~~~~~~~~~~~  179 (328)
T 4fcg_A          102 RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP-EPLASTDASGEH  179 (328)
T ss_dssp             GGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCC-SCSEEEC-CCCE
T ss_pred             hCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccC-hhHhhccchhhh
Confidence            899999999999999966667999999999999999999 789999999999999999999999998 4444        


Q ss_pred             -CCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCC
Q 006559          161 -RLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFG  211 (640)
Q Consensus       161 -~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~  211 (640)
                       ++++|++|+|++|+++ .+|..+..+++|+.|+|++|++++ +|..+..++
T Consensus       180 ~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~  229 (328)
T 4fcg_A          180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLP  229 (328)
T ss_dssp             EESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCT
T ss_pred             ccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCC
Confidence             4899999999999998 778888889999999999999986 555555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=6.8e-19  Score=169.86  Aligned_cols=152  Identities=24%  Similarity=0.262  Sum_probs=128.5

Q ss_pred             CCCCCCCCceEecCC---------CCcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCCC-CCCCCCCcEEE
Q 006559           52 DPCFDSWRGVTCNPS---------THRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLY  120 (640)
Q Consensus        52 ~~c~~~w~gv~C~~~---------~~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~  120 (640)
                      +.|.|+|++|.|...         ..+++.|+|+++.+++.. ..+..+++|+.|+|++|.+++.++. +..+++|++|+
T Consensus         3 ~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   82 (208)
T 2o6s_A            3 SRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN   82 (208)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence            356679999999753         236888999999998765 4578999999999999999987664 68899999999


Q ss_pred             cccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCc
Q 006559          121 LSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS  200 (640)
Q Consensus       121 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~  200 (640)
                      |++|.+++..+..|.++++|+.|+|++|++++ +|...+..+++|++|+|++|++++..+..+..+++|+.|++++|.+.
T Consensus        83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCCCcCCccCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            99999997777778999999999999999985 45466888999999999999999877777888899999999999887


Q ss_pred             ccCC
Q 006559          201 GQIP  204 (640)
Q Consensus       201 g~ip  204 (640)
                      +..|
T Consensus       162 ~~~~  165 (208)
T 2o6s_A          162 CTCP  165 (208)
T ss_dssp             CCTT
T ss_pred             cCCC
Confidence            7666

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=9.8e-19  Score=171.49  Aligned_cols=154  Identities=23%  Similarity=0.257  Sum_probs=101.3

Q ss_pred             CCCCCCCCCCCCCceEecCC---------CCcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCC
Q 006559           47 WVNSTDPCFDSWRGVTCNPS---------THRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPH  115 (640)
Q Consensus        47 W~~~~~~c~~~w~gv~C~~~---------~~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~  115 (640)
                      |+.+...|  +|++|.|...         ...+..|+|+++.+++.. ..+..+++|+.|+|++|.|+..++ .+..+++
T Consensus        12 ~~~~~~~C--s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~   89 (229)
T 3e6j_A           12 ACPSQCSC--SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ   89 (229)
T ss_dssp             CCCTTCEE--ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCCCCCEE--eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC
Confidence            33344444  8999999753         124566677777766653 456667777777777777766554 3566777


Q ss_pred             CcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcc
Q 006559          116 LKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVS  195 (640)
Q Consensus       116 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls  195 (640)
                      |++|+|++|+|++..+..|..+++|+.|+|++|+|+ .+| ..+..+++|++|+|++|+|++..+..+..+++|+.|+|+
T Consensus        90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  167 (229)
T 3e6j_A           90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF  167 (229)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccC-cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence            777777777776655555666777777777777776 566 456666777777777777776555566666777777777


Q ss_pred             cCcCcccCC
Q 006559          196 NNQLSGQIP  204 (640)
Q Consensus       196 ~N~l~g~ip  204 (640)
                      +|.+++..+
T Consensus       168 ~N~~~c~c~  176 (229)
T 3e6j_A          168 GNPWDCECR  176 (229)
T ss_dssp             TSCBCTTBG
T ss_pred             CCCccCCcc
Confidence            777665544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.78  E-value=2e-18  Score=171.75  Aligned_cols=153  Identities=23%  Similarity=0.282  Sum_probs=122.4

Q ss_pred             cEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcc
Q 006559           69 RVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS  146 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  146 (640)
                      .+..|+|.++.+++.. ..+..+++|+.|+|++|.|++.++ .+..+++|++|+|++|.|++..|..|.++++|+.|+|+
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            5677888888888765 468889999999999999988766 47888999999999999988777788889999999999


Q ss_pred             cCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCC---CCCCCCCcccC
Q 006559          147 HNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFG---GSSFAGNKNLC  222 (640)
Q Consensus       147 ~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~---~~~~~gn~~lc  222 (640)
                      +|++++ +|...+..+++|++|+|++|+|++..+..+..+++|+.|+|++|+|++..|..+..+.   ...+.+|+..|
T Consensus       116 ~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          116 GNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             SSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CCcCCC-cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            999985 5546678889999999999999887777788888999999999999877776665443   33445555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=6.5e-19  Score=171.66  Aligned_cols=152  Identities=18%  Similarity=0.224  Sum_probs=90.1

Q ss_pred             CCCCCCCCceEecCCC---------CcEEEEEeCCCCCCCCc--hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEE
Q 006559           52 DPCFDSWRGVTCNPST---------HRVIKLVLEDLDLTGPA--EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHL  119 (640)
Q Consensus        52 ~~c~~~w~gv~C~~~~---------~~v~~l~l~~~~l~g~~--~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L  119 (640)
                      +.|.|.|+.+.|....         ..+..|+|++|.+++..  ..+..+++|+.|+|++|.|++.++ .+..+++|++|
T Consensus         7 ~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L   86 (220)
T 2v70_A            7 EKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI   86 (220)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEE
Confidence            3465678877776421         23445666666665542  335566666666666666665544 45666666666


Q ss_pred             EcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcC
Q 006559          120 YLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQL  199 (640)
Q Consensus       120 ~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l  199 (640)
                      +|++|.|++..|..|.++++|+.|+|++|++++..| ..|..+++|++|+|++|+|++..|..+..+++|+.|+|++|.|
T Consensus        87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            666666665555556666666666666666665434 4556666666666666666665566666666666666666666


Q ss_pred             cccCC
Q 006559          200 SGQIP  204 (640)
Q Consensus       200 ~g~ip  204 (640)
                      ++..+
T Consensus       166 ~c~c~  170 (220)
T 2v70_A          166 NCNCY  170 (220)
T ss_dssp             ECSGG
T ss_pred             cCCCc
Confidence            55443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=3.2e-18  Score=166.72  Aligned_cols=156  Identities=22%  Similarity=0.274  Sum_probs=110.2

Q ss_pred             CCCCCCCCceEecCCCCcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccC
Q 006559           52 DPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTF  130 (640)
Q Consensus        52 ~~c~~~w~gv~C~~~~~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~  130 (640)
                      ..|.|.|..|.|..            ++++..+..+.  ++|+.|+|++|.|++.++ .+..+++|++|+|++|.+++..
T Consensus         7 ~~C~C~~~~v~c~~------------~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~   72 (220)
T 2v9t_B            7 AACTCSNNIVDCRG------------KGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA   72 (220)
T ss_dssp             TTSEEETTEEECTT------------SCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCEECCCEEEcCC------------CCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC
Confidence            34656788888864            33333332222  577888888888877655 5777888888888888888777


Q ss_pred             CccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCC
Q 006559          131 PSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPF  210 (640)
Q Consensus       131 p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~  210 (640)
                      |..|.++++|+.|+|++|+++ .+|...|..+++|++|+|++|+|++..|..+..+++|+.|+|++|+|++..|..+..+
T Consensus        73 ~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  151 (220)
T 2v9t_B           73 PDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL  151 (220)
T ss_dssp             TTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             HHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCC
Confidence            778888888888888888887 4564667778888888888888887777777778888888888888887666655544


Q ss_pred             CC---CCCCCCcccC
Q 006559          211 GG---SSFAGNKNLC  222 (640)
Q Consensus       211 ~~---~~~~gn~~lc  222 (640)
                      ..   ..+.+|+..|
T Consensus       152 ~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          152 RAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTCCEEECCSSCEEC
T ss_pred             CCCCEEEeCCCCcCC
Confidence            32   3445665554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=7.6e-18  Score=160.40  Aligned_cols=158  Identities=23%  Similarity=0.352  Sum_probs=126.2

Q ss_pred             CCCCCCCceEecCCCCcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCC--CCCCCCCcEEEcccccccccC
Q 006559           53 PCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLN--LSSWPHLKHLYLSHNRFTGTF  130 (640)
Q Consensus        53 ~c~~~w~gv~C~~~~~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~g~~  130 (640)
                      .|.|.|+.+.|.            +++++..+..+.  .+|+.|+|++|.|++.++.  +..+++|++|+|++|.|++..
T Consensus         5 ~C~C~~~~l~~s------------~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~   70 (192)
T 1w8a_A            5 MCHCEGTTVDCT------------GRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE   70 (192)
T ss_dssp             TSEEETTEEECT------------TSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC
T ss_pred             CCEECCCEEEcC------------CCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC
Confidence            455567666664            445554443332  3899999999999988764  889999999999999999999


Q ss_pred             CccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCc-ccCC
Q 006559          131 PSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPA-WMSP  209 (640)
Q Consensus       131 p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~-~~~~  209 (640)
                      |..|.++++|+.|+|++|++++..| ..|..+++|++|+|++|+|++.+|..+..+++|+.|+|++|.|++..+- |+..
T Consensus        71 ~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~  149 (192)
T 1w8a_A           71 PNAFEGASHIQELQLGENKIKEISN-KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE  149 (192)
T ss_dssp             TTTTTTCTTCCEEECCSCCCCEECS-SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred             HhHcCCcccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH
Confidence            9999999999999999999997555 7789999999999999999999999999999999999999999998763 2211


Q ss_pred             -CCCCCCCCCcccCCCC
Q 006559          210 -FGGSSFAGNKNLCGRP  225 (640)
Q Consensus       210 -~~~~~~~gn~~lcg~~  225 (640)
                       +....+.++...|+.|
T Consensus       150 ~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          150 WLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             HHHHHCCSGGGCBBCSS
T ss_pred             HHHHcCCCCCCCCCCCC
Confidence             1112334555567665

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.75  E-value=1.6e-18  Score=173.11  Aligned_cols=132  Identities=15%  Similarity=0.142  Sum_probs=101.9

Q ss_pred             hccccccCcceEEEEEe-CCCcE--EEEEEecccc-c-------------------------hHHHHHHHHHHhccCCCc
Q 006559          338 AELLGKGCVGATYKVVL-DGGDV--VVVKRIRERK-K-------------------------KREVDEWLRVIGGLRHSN  388 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~--vavK~l~~~~-~-------------------------~~~~~~e~~~l~~l~H~n  388 (640)
                      .+.||+|+||.||+|.. .+|..  ||||.++... .                         ...+.+|++.+.+++|++
T Consensus        52 ~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~  131 (258)
T 1zth_A           52 GGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAG  131 (258)
T ss_dssp             EEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHHhCC
Confidence            46799999999999997 67888  9999875431 0                         125678899999999886


Q ss_pred             c--cceeEEEEcCCeEEEEEeccCC-C----CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhh-cCCCCCceecC
Q 006559          389 I--VSIRAYCNGKDELFLVYDYLPH-G----SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH-GYNKAHLFHGH  460 (640)
Q Consensus       389 i--v~l~~~~~~~~~~~lV~Ey~~~-g----sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH-~~~~~~ivHrd  460 (640)
                      +  ...+++    +..+|||||+.+ |    +|.++...        .++.....++.|++.||.||| +.+   |+|||
T Consensus       132 i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~--------~~~~~~~~i~~qi~~~l~~lH~~~g---ivHrD  196 (258)
T 1zth_A          132 VSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE--------LKELDVEGIFNDVVENVKRLYQEAE---LVHAD  196 (258)
T ss_dssp             CCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG--------GGGSCHHHHHHHHHHHHHHHHHTSC---EECSS
T ss_pred             CCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc--------cChHHHHHHHHHHHHHHHHHHHHCC---EEeCC
Confidence            5  333332    356899999942 4    67766432        123356789999999999999 654   99999


Q ss_pred             CCCCCeEECCCCCeEEccCCcccccC
Q 006559          461 LSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       461 lk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      |||+|||++.  .++|+|||++....
T Consensus       197 lkp~NILl~~--~~~liDFG~a~~~~  220 (258)
T 1zth_A          197 LSEYNIMYID--KVYFIDMGQAVTLR  220 (258)
T ss_dssp             CSTTSEEESS--SEEECCCTTCEETT
T ss_pred             CCHHHEEEcC--cEEEEECcccccCC
Confidence            9999999998  99999999997653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.75  E-value=1.4e-18  Score=178.92  Aligned_cols=159  Identities=28%  Similarity=0.409  Sum_probs=112.5

Q ss_pred             cEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCC-CCc-----------------------EEEcc
Q 006559           69 RVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWP-HLK-----------------------HLYLS  122 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-~L~-----------------------~L~Ls  122 (640)
                      ++..|+|++|.+++.. ..+..+++|++|+|++|.+++..+ .+..++ +|+                       .|+|+
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls  205 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS  205 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECC
T ss_pred             CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECc
Confidence            5666777777666533 456666666666666666664322 344444 444                       45555


Q ss_pred             cccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCccc
Q 006559          123 HNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQ  202 (640)
Q Consensus       123 ~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~  202 (640)
                      +|.+++.+|..|.++++|+.|+|++|.+++.+| . +..+++|++|+|++|++++.+|..+..+++|+.|+|++|+|+|.
T Consensus       206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  283 (313)
T 1ogq_A          206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-K-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-G-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             CCcccCcCCHHHhcCCCCCEEECCCCceeeecC-c-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence            555555555566667777777777777776555 2 67788888888888999888888888899999999999999999


Q ss_pred             CCcc--cCCCCCCCCCCCcccCCCCCCCCC
Q 006559          203 IPAW--MSPFGGSSFAGNKNLCGRPLPSDC  230 (640)
Q Consensus       203 ip~~--~~~~~~~~~~gn~~lcg~~~~~~c  230 (640)
                      +|..  +..+....+.+|+.+||.|++. |
T Consensus       284 ip~~~~l~~L~~l~l~~N~~lc~~p~~~-C  312 (313)
T 1ogq_A          284 IPQGGNLQRFDVSAYANNKCLCGSPLPA-C  312 (313)
T ss_dssp             CCCSTTGGGSCGGGTCSSSEEESTTSSC-C
T ss_pred             CCCCccccccChHHhcCCCCccCCCCCC-C
Confidence            9875  3345566788999999988774 6

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.72  E-value=4.3e-17  Score=152.97  Aligned_cols=138  Identities=21%  Similarity=0.246  Sum_probs=116.7

Q ss_pred             CCCCCCCCceEecCCCCcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccC
Q 006559           52 DPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTF  130 (640)
Q Consensus        52 ~~c~~~w~gv~C~~~~~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~  130 (640)
                      +.|.|+|++|.|...            +++..+.  ...++|+.|+|++|.+++.++ .+..+++|++|+|++|.|++..
T Consensus         3 ~~C~C~~~~l~~~~~------------~l~~~p~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~   68 (177)
T 2o6r_A            3 SRCSCSGTEIRCNSK------------GLTSVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP   68 (177)
T ss_dssp             TTCEEETTEEECCSS------------CCSSCCT--TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred             CCCEeCCCEEEecCC------------CCccCCC--CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC
Confidence            356679999999753            3333222  224789999999999998776 4789999999999999999877


Q ss_pred             CccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCC
Q 006559          131 PSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP  204 (640)
Q Consensus       131 p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip  204 (640)
                      +..|.++++|+.|+|++|++++ +|...+..+++|++|+|++|+|++..+..+..+++|+.|+|++|.+++..|
T Consensus        69 ~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           69 DGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhHccCCCccCEEECCCCCccc-cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            7778999999999999999996 454678899999999999999998777777889999999999999998876

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.72  E-value=1.3e-16  Score=160.64  Aligned_cols=153  Identities=24%  Similarity=0.262  Sum_probs=131.9

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCC-CCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS  146 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  146 (640)
                      .++..|+|+++.+++. +.+..+++|++|+|++|.+++.++. +..+++|++|+|++|++++..|..|.++++|+.|+|+
T Consensus        63 ~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  141 (272)
T 3rfs_A           63 PNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA  141 (272)
T ss_dssp             TTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC
Confidence            4688999999999885 5789999999999999999988764 7899999999999999998888889999999999999


Q ss_pred             cCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCCC---CCCCCCcccC
Q 006559          147 HNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGG---SSFAGNKNLC  222 (640)
Q Consensus       147 ~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~~---~~~~gn~~lc  222 (640)
                      +|++++ +|...+..+++|+.|+|++|++++..+..+..+++|+.|++++|+|++..|..+..+..   ..+.+|+..|
T Consensus       142 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  219 (272)
T 3rfs_A          142 HNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  219 (272)
T ss_dssp             SSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccCc-cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence            999996 45467889999999999999999888888888999999999999999988876655443   3445665544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.71  E-value=9.6e-17  Score=161.42  Aligned_cols=139  Identities=24%  Similarity=0.278  Sum_probs=91.9

Q ss_pred             cEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCCC-CCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcc
Q 006559           69 RVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS  146 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  146 (640)
                      .+..|+|+++.+++.. ..+..+++|++|+|++|.++..++. +..+++|++|+|++|.+++..+..|.++++|+.|+|+
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            3556666666666544 3566777777777777777665553 4667777777777777776555566777777777777


Q ss_pred             cCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccC
Q 006559          147 HNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMS  208 (640)
Q Consensus       147 ~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~  208 (640)
                      +|++++. |...+..+++|++|+|++|.+++..+..+..+++|+.|+|++|++++..|..+.
T Consensus       118 ~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  178 (270)
T 2o6q_A          118 RNQLKSL-PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD  178 (270)
T ss_dssp             SSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             CCccCee-CHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhc
Confidence            7777643 335566777777777777777766555566667777777777777665554443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=8.9e-17  Score=156.46  Aligned_cols=135  Identities=22%  Similarity=0.196  Sum_probs=122.1

Q ss_pred             CcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEc
Q 006559           68 HRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDL  145 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  145 (640)
                      ..++.|+|++|.+++.. ..+..+++|+.|+|++|.+++..+ .+..+++|++|+|++|.|+...+..|.++++|+.|+|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            46899999999998765 478999999999999999998755 7999999999999999999766667899999999999


Q ss_pred             ccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccC
Q 006559          146 SHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQI  203 (640)
Q Consensus       146 s~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~i  203 (640)
                      ++|++++..| ..|..+++|++|+|++|+|++..+..+..+++|+.|+|++|.|...-
T Consensus       112 ~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B          112 NANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             CSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             CCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence            9999997655 78999999999999999999988888999999999999999998643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=1.2e-16  Score=155.57  Aligned_cols=156  Identities=19%  Similarity=0.215  Sum_probs=131.6

Q ss_pred             CceEecCCCCcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCC--CCCCCCCCcEEEcccccccccCCccCCC
Q 006559           59 RGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNL--NLSSWPHLKHLYLSHNRFTGTFPSGVSS  136 (640)
Q Consensus        59 ~gv~C~~~~~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~g~~p~~~~~  136 (640)
                      .+-+|..     ..++++++.++..+..+  ...++.|+|++|.|++.++  .+..+++|++|+|++|.|++..|..|.+
T Consensus         7 ~~C~C~~-----~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~   79 (220)
T 2v70_A            7 EKCRCEG-----TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG   79 (220)
T ss_dssp             TTCEEET-----TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CCCEECC-----CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC
Confidence            4556753     26889999998766544  3457899999999998754  3889999999999999999988889999


Q ss_pred             CCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCCC---C
Q 006559          137 LRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGG---S  213 (640)
Q Consensus       137 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~~---~  213 (640)
                      +++|+.|+|++|++++ +|...|..+++|++|+|++|+|++..|..+..+++|+.|+|++|+|++..|..+..+..   .
T Consensus        80 l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  158 (220)
T 2v70_A           80 ASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL  158 (220)
T ss_dssp             CTTCCEEECCSSCCCC-CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCc-cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence            9999999999999996 45477999999999999999999999999999999999999999999998988776543   3


Q ss_pred             CCCCCcccC
Q 006559          214 SFAGNKNLC  222 (640)
Q Consensus       214 ~~~gn~~lc  222 (640)
                      .+.+|+..|
T Consensus       159 ~L~~N~l~c  167 (220)
T 2v70_A          159 NLLANPFNC  167 (220)
T ss_dssp             ECCSCCEEC
T ss_pred             EecCcCCcC
Confidence            445665544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.71  E-value=1.4e-17  Score=174.85  Aligned_cols=171  Identities=20%  Similarity=0.182  Sum_probs=139.3

Q ss_pred             CCCCCCCCceEecCC---------CCcEEEEEeCCCCCCCCc-hhcc-CCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEE
Q 006559           52 DPCFDSWRGVTCNPS---------THRVIKLVLEDLDLTGPA-EVLS-RLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHL  119 (640)
Q Consensus        52 ~~c~~~w~gv~C~~~---------~~~v~~l~l~~~~l~g~~-~~l~-~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L  119 (640)
                      ..|.|.+..|.|...         ...+..|+|++|.+++.. ..+. .+++|+.|+|++|.|++.++ .+..+++|++|
T Consensus        14 ~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L   93 (361)
T 2xot_A           14 ANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL   93 (361)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence            346678899999652         234778999999998865 4465 89999999999999998776 58999999999


Q ss_pred             EcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCc---CCCCCCcEEEccc
Q 006559          120 YLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVN---SSSRSILDFNVSN  196 (640)
Q Consensus       120 ~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~---~~~~~L~~l~ls~  196 (640)
                      +|++|+|++..+..|.++++|+.|+|++|++++..| ..|..+++|+.|+|++|+|++..+..+   ..+++|+.|+|++
T Consensus        94 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~  172 (361)
T 2xot_A           94 DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS  172 (361)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred             ECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH-HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence            999999998888889999999999999999996555 789999999999999999998666555   5689999999999


Q ss_pred             CcCcccCCcccCCCC-----CCCCCCCcccCC
Q 006559          197 NQLSGQIPAWMSPFG-----GSSFAGNKNLCG  223 (640)
Q Consensus       197 N~l~g~ip~~~~~~~-----~~~~~gn~~lcg  223 (640)
                      |+|++..+..+..++     ...+.+|+..|.
T Consensus       173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             SCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             CCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence            999965544554443     345677777664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.69  E-value=1.2e-16  Score=158.96  Aligned_cols=135  Identities=25%  Similarity=0.315  Sum_probs=122.9

Q ss_pred             CcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEc
Q 006559           68 HRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDL  145 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  145 (640)
                      .++..|+|++|.+++.. ..+..+++|+.|+|++|.|++.++ .+..+++|++|+|++|+|++..+..|.++++|+.|+|
T Consensus        59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  138 (251)
T 3m19_A           59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL  138 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEEC
Confidence            47899999999999865 558999999999999999998876 5789999999999999999877778899999999999


Q ss_pred             ccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccC
Q 006559          146 SHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQI  203 (640)
Q Consensus       146 s~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~i  203 (640)
                      ++|++++ +|...+..+++|++|+|++|+|++..+..+..+++|+.|+|++|.|++..
T Consensus       139 s~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          139 NTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             CSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred             cCCcCCc-cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence            9999995 55467999999999999999999988888999999999999999999873

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.69  E-value=3e-16  Score=159.47  Aligned_cols=131  Identities=24%  Similarity=0.299  Sum_probs=75.3

Q ss_pred             cEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           69 RVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .+..|+|++|.+++.. ..+..+++|+.|+|++|.|++.++. ..+++|++|+|++|.|+ .+|..+.++++|+.|+|++
T Consensus        32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~  109 (290)
T 1p9a_G           32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF  109 (290)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCS
T ss_pred             CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCC
Confidence            5666777777766543 4566666666666666666554322 45555666666666555 4555555555666666666


Q ss_pred             CCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCccc
Q 006559          148 NAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQ  202 (640)
Q Consensus       148 N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~  202 (640)
                      |++++ +|+..|..+++|++|+|++|+|++..+..+..+++|+.|+|++|+|++.
T Consensus       110 N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G          110 NRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             SCCCC-CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             CcCcc-cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence            66553 3324455555566666666655555555555555555555555555533

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.68  E-value=6.6e-16  Score=155.28  Aligned_cols=154  Identities=21%  Similarity=0.254  Sum_probs=132.0

Q ss_pred             CcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEc
Q 006559           68 HRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDL  145 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  145 (640)
                      .++..|+|+++.++... ..+..+++|++|+|++|.+++.++ .+..+++|++|+|++|.+++..|..|.++++|+.|+|
T Consensus        61 ~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  140 (270)
T 2o6q_A           61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL  140 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEEC
Confidence            46889999999998765 456899999999999999998876 5789999999999999999988888999999999999


Q ss_pred             ccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCC---CCCCCCCcccC
Q 006559          146 SHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFG---GSSFAGNKNLC  222 (640)
Q Consensus       146 s~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~---~~~~~gn~~lc  222 (640)
                      ++|.+++ +|...+..+++|+.|+|++|++++..+..+..+++|+.|+|++|+|++..+..+..+.   ...+.+|+..|
T Consensus       141 s~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          141 GYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCcCCc-cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            9999995 5646789999999999999999998888888899999999999999976665555443   33455665544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.67  E-value=8.9e-16  Score=150.35  Aligned_cols=156  Identities=21%  Similarity=0.218  Sum_probs=127.3

Q ss_pred             CCceEecCCCCcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCC
Q 006559           58 WRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSS  136 (640)
Q Consensus        58 w~gv~C~~~~~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~  136 (640)
                      |..-.|..     ..++..+++++..+..+  .++|+.|+|++|.|++.++ .+..+++|++|+|++|+|++..+..|.+
T Consensus        14 ~~~~~Cs~-----~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~   86 (229)
T 3e6j_A           14 PSQCSCSG-----TTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS   86 (229)
T ss_dssp             CTTCEEET-----TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCEEeC-----CEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc
Confidence            55666753     24778888887765433  3899999999999999865 6899999999999999998766677899


Q ss_pred             CCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCCC---C
Q 006559          137 LRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGG---S  213 (640)
Q Consensus       137 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~~---~  213 (640)
                      +++|+.|+|++|++++ +|...|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|+|++..+..+..+..   .
T Consensus        87 l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  164 (229)
T 3e6j_A           87 LTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA  164 (229)
T ss_dssp             CTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcCEEECCCCcCCc-cChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence            9999999999999995 55477899999999999999999 67888889999999999999999776665654433   3


Q ss_pred             CCCCCcccC
Q 006559          214 SFAGNKNLC  222 (640)
Q Consensus       214 ~~~gn~~lc  222 (640)
                      .+.+|+..|
T Consensus       165 ~l~~N~~~c  173 (229)
T 3e6j_A          165 YLFGNPWDC  173 (229)
T ss_dssp             ECTTSCBCT
T ss_pred             EeeCCCccC
Confidence            445665444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.67  E-value=1.6e-16  Score=162.83  Aligned_cols=158  Identities=23%  Similarity=0.277  Sum_probs=110.9

Q ss_pred             CCCCCCCCceEecCCC---------CcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCC---CCCCCCCCCCcE
Q 006559           52 DPCFDSWRGVTCNPST---------HRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSS---NLNLSSWPHLKH  118 (640)
Q Consensus        52 ~~c~~~w~gv~C~~~~---------~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~---~~~~~~l~~L~~  118 (640)
                      +.|.|.|++|.|+...         ..++.|+|+++.++..+ ..+..+++|+.|+|++|.++..   +..+..+++|++
T Consensus         3 ~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~   82 (306)
T 2z66_A            3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY   82 (306)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred             CCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence            3566799999997532         47899999999998765 4578999999999999998754   224455677777


Q ss_pred             EEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCc
Q 006559          119 LYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQ  198 (640)
Q Consensus       119 L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~  198 (640)
                      |+|++|.+++ +|..+.++++|+.|+|++|++++..+...+..+++|++|+|++|.+++..+..+..+++|+.|++++|.
T Consensus        83 L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  161 (306)
T 2z66_A           83 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS  161 (306)
T ss_dssp             EECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred             EECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence            7777777763 555566777777777777777643332456666777777777777776666666666777777777777


Q ss_pred             Ccc-cCCcccCCC
Q 006559          199 LSG-QIPAWMSPF  210 (640)
Q Consensus       199 l~g-~ip~~~~~~  210 (640)
                      +++ .+|..+..+
T Consensus       162 l~~~~~~~~~~~l  174 (306)
T 2z66_A          162 FQENFLPDIFTEL  174 (306)
T ss_dssp             EGGGEECSCCTTC
T ss_pred             cccccchhHHhhC
Confidence            765 455555443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.66  E-value=8.7e-16  Score=154.57  Aligned_cols=137  Identities=25%  Similarity=0.296  Sum_probs=124.0

Q ss_pred             CcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCCC-CCCCCCCcEEEcccccccccCCccCCCCCCCCEEEc
Q 006559           68 HRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNLN-LSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDL  145 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  145 (640)
                      .++..|+|+++.+++.. ..+..+++|+.|+|++|.+++.++. +..+++|++|+|++|.+++..|..+.++++|+.|+|
T Consensus        85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A           85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL  164 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence            47899999999999866 4579999999999999999988774 789999999999999999888888899999999999


Q ss_pred             ccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCc
Q 006559          146 SHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPA  205 (640)
Q Consensus       146 s~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~  205 (640)
                      ++|++++ +|...+..+++|++|+|++|++++.++..+..+++|+.|++++|.+.|..|.
T Consensus       165 ~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          165 SYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             CSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCCcCc-cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence            9999996 4447789999999999999999998888889999999999999999888773

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.66  E-value=1.4e-16  Score=164.88  Aligned_cols=142  Identities=15%  Similarity=0.204  Sum_probs=122.4

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCC-CCC---------CCCCCcEEEcccccccccCCccCCCC
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNL-NLS---------SWPHLKHLYLSHNRFTGTFPSGVSSL  137 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~---------~l~~L~~L~Ls~N~l~g~~p~~~~~l  137 (640)
                      .++..|+|++|.++..+..+..+++|+.|+|++|.+.+..| .+.         .+++|++|+|++|.|+ .+|..++++
T Consensus       127 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l  205 (328)
T 4fcg_A          127 AGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL  205 (328)
T ss_dssp             TTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC
T ss_pred             CCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC
Confidence            36888999999998767789999999999999987777554 444         4899999999999998 788889999


Q ss_pred             CCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCCC
Q 006559          138 RHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGG  212 (640)
Q Consensus       138 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~~  212 (640)
                      ++|+.|+|++|++++ +| ..+..+++|++|+|++|++.+.+|..+..+++|+.|+|++|++.+.+|.++..+..
T Consensus       206 ~~L~~L~L~~N~l~~-l~-~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~  278 (328)
T 4fcg_A          206 QNLKSLKIRNSPLSA-LG-PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ  278 (328)
T ss_dssp             TTCCEEEEESSCCCC-CC-GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred             CCCCEEEccCCCCCc-Cc-hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCC
Confidence            999999999999985 66 46889999999999999999999999989999999999999999999987765543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=4.6e-16  Score=148.10  Aligned_cols=126  Identities=20%  Similarity=0.182  Sum_probs=108.0

Q ss_pred             eCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCC
Q 006559           75 LEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEI  154 (640)
Q Consensus        75 l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~  154 (640)
                      +++++++..+..+  .++|+.|+|++|.|+..+..+..+++|+.|+|++|.|++..|..|.++++|+.|+|++|++++..
T Consensus        17 ~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~   94 (193)
T 2wfh_A           17 CSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP   94 (193)
T ss_dssp             CTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             cCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC
Confidence            3344555443323  35899999999999987778999999999999999999988889999999999999999999654


Q ss_pred             CchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccC
Q 006559          155 PMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQI  203 (640)
Q Consensus       155 p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~i  203 (640)
                      | ..|..+++|++|+|++|+|++..+..+..+++|+.|+|++|.+.+.-
T Consensus        95 ~-~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           95 P-RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             T-TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             H-HHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence            4 78999999999999999999877778888999999999999998643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.65  E-value=2.7e-16  Score=164.51  Aligned_cols=155  Identities=23%  Similarity=0.253  Sum_probs=119.7

Q ss_pred             CCCCCCceEecCC-----------CCcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEE
Q 006559           54 CFDSWRGVTCNPS-----------THRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLY  120 (640)
Q Consensus        54 c~~~w~gv~C~~~-----------~~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~  120 (640)
                      |.|.|.|+ |+..           ..++..|+|+++.+++.. ..+..+++|+.|+|++|.+++.++ .+..+++|++|+
T Consensus        28 ~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           28 LSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             CEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            33489988 7642           136778888888887755 368888888888888888887655 588888888888


Q ss_pred             cccccccccCCccCCCCCCCCEEEcccCCCCCCCCc-hhcCCCCCCcEEEccCC-cceecccCCcCCCCCCcEEEcccCc
Q 006559          121 LSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPM-TELTRLPNLLTLRLEDN-RFTGTLYSVNSSSRSILDFNVSNNQ  198 (640)
Q Consensus       121 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~-~~~~~l~~L~~L~L~~N-~l~g~~~~~~~~~~~L~~l~ls~N~  198 (640)
                      |++|.+++..+..|.++++|++|+|++|+++ .+|. ..+..+++|++|++++| .+++..+..+..+++|+.|++++|+
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            8888888655555888888888888888888 4664 46788888888888888 4666667778888888888888888


Q ss_pred             CcccCCcccCCC
Q 006559          199 LSGQIPAWMSPF  210 (640)
Q Consensus       199 l~g~ip~~~~~~  210 (640)
                      +++..|..+..+
T Consensus       186 l~~~~~~~l~~l  197 (353)
T 2z80_A          186 LQSYEPKSLKSI  197 (353)
T ss_dssp             CCEECTTTTTTC
T ss_pred             cCccCHHHHhcc
Confidence            888777766543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.65  E-value=2.6e-16  Score=170.49  Aligned_cols=158  Identities=17%  Similarity=0.149  Sum_probs=134.8

Q ss_pred             CCCCCCCceEecCCC--------CcEEEEEeCCCCCCCC-chhccCCCCCCEEeCCCCcCCCCC--CCCCCCCCCcEEEc
Q 006559           53 PCFDSWRGVTCNPST--------HRVIKLVLEDLDLTGP-AEVLSRLTQLRLLSLKNNLLSSSN--LNLSSWPHLKHLYL  121 (640)
Q Consensus        53 ~c~~~w~gv~C~~~~--------~~v~~l~l~~~~l~g~-~~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~l~~L~~L~L  121 (640)
                      .|.|.+..|.|....        .++..|+|+++.+++. +..+.++++|++|+|++|.+.+..  ..+..+++|++|+|
T Consensus         7 ~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A            7 ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL   86 (455)
T ss_dssp             CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred             eeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence            343334447786532        4689999999999886 467999999999999999998643  36899999999999


Q ss_pred             ccccccccCCccCCCCCCCCEEEcccCCCCCCCCc-hhcCCCCCCcEEEccCCcceecccCC-cCCCCCCcEEEcccCcC
Q 006559          122 SHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPM-TELTRLPNLLTLRLEDNRFTGTLYSV-NSSSRSILDFNVSNNQL  199 (640)
Q Consensus       122 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~-~~~~~l~~L~~L~L~~N~l~g~~~~~-~~~~~~L~~l~ls~N~l  199 (640)
                      ++|.+++..|..|+++++|++|+|++|++++.+|. ..+..+++|++|+|++|++++..|.. +..+++|+.|++++|++
T Consensus        87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            99999999999999999999999999999986552 23889999999999999999988876 78899999999999999


Q ss_pred             cccCCcccCCC
Q 006559          200 SGQIPAWMSPF  210 (640)
Q Consensus       200 ~g~ip~~~~~~  210 (640)
                      ++..|..+..+
T Consensus       167 ~~~~~~~l~~l  177 (455)
T 3v47_A          167 KSICEEDLLNF  177 (455)
T ss_dssp             SCCCTTTSGGG
T ss_pred             cccChhhhhcc
Confidence            99998877654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.65  E-value=1.1e-15  Score=154.95  Aligned_cols=143  Identities=22%  Similarity=0.232  Sum_probs=115.7

Q ss_pred             CcEEEEEeCCCCCCCC-chhccCCCCCCEEeCCCCc-CCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEE
Q 006559           68 HRVIKLVLEDLDLTGP-AEVLSRLTQLRLLSLKNNL-LSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVD  144 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~-~~~l~~l~~L~~L~Ls~N~-l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  144 (640)
                      .++..|+|+++.+++. ...+..+++|+.|+|++|. +...++ .+..+++|++|+|++|.+++..|..+.++++|+.|+
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  135 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY  135 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence            4688888888888775 4678888889999998887 776644 678888888899988888887788888888888888


Q ss_pred             cccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCC
Q 006559          145 LSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFG  211 (640)
Q Consensus       145 Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~  211 (640)
                      |++|.+++ +|...+..+++|++|+|++|++++..+..+..+++|+.|++++|++++..|..+..++
T Consensus       136 l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  201 (285)
T 1ozn_A          136 LQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG  201 (285)
T ss_dssp             CCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CCCCcccc-cCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcc
Confidence            88888885 4446678888888888888888877777788888888888888888888887776544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.65  E-value=5.1e-16  Score=156.52  Aligned_cols=140  Identities=16%  Similarity=0.126  Sum_probs=124.2

Q ss_pred             CcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEc
Q 006559           68 HRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDL  145 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  145 (640)
                      ..+..|+|+++.+++.. ..+..+++|+.|+|++|.+++.++ .+..+++|++|+|++|.+++..|..|.++++|+.|+|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            35889999999998765 478999999999999999998766 6899999999999999999988899999999999999


Q ss_pred             ccCCCCCCCCchhcCCCCCCcEEEccCCcceec-ccCCcCCCCCCcEEEcccCcCcccCCcccC
Q 006559          146 SHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGT-LYSVNSSSRSILDFNVSNNQLSGQIPAWMS  208 (640)
Q Consensus       146 s~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~-~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~  208 (640)
                      ++|.+++..+ ..+..+++|++|+|++|++++. +|..+..+++|+.|++++|++++..+..+.
T Consensus       108 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  170 (276)
T 2z62_A          108 VETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  170 (276)
T ss_dssp             TTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             CCCCccccCc-hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence            9999996444 5689999999999999999874 688899999999999999999987766554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.64  E-value=2.8e-16  Score=174.41  Aligned_cols=153  Identities=22%  Similarity=0.230  Sum_probs=133.1

Q ss_pred             CCCceEecCC-----------CCcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEccc
Q 006559           57 SWRGVTCNPS-----------THRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSH  123 (640)
Q Consensus        57 ~w~gv~C~~~-----------~~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~  123 (640)
                      .|.|+ |+..           ..+++.|+|+++.+++.. ..+..+++|++|+|++|.+++.++ .+..+++|++|+|++
T Consensus         5 ~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~   83 (549)
T 2z81_A            5 DASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD   83 (549)
T ss_dssp             CTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence            78888 8643           237899999999998864 678999999999999999998775 699999999999999


Q ss_pred             ccccccCCccCCCCCCCCEEEcccCCCCC-CCCchhcCCCCCCcEEEccCCcceeccc-CCcCCCCCCcEEEcccCcCcc
Q 006559          124 NRFTGTFPSGVSSLRHLRRVDLSHNAYEG-EIPMTELTRLPNLLTLRLEDNRFTGTLY-SVNSSSRSILDFNVSNNQLSG  201 (640)
Q Consensus       124 N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g-~~p~~~~~~l~~L~~L~L~~N~l~g~~~-~~~~~~~~L~~l~ls~N~l~g  201 (640)
                      |.+++..|..|+++++|++|+|++|.+++ .+| ..+.++++|++|+|++|.+.+.+| ..+..+++|+.|++++|++++
T Consensus        84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A           84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT-SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS-CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CccCccCHHHhccCCCCcEEECCCCcccccchh-hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            99998888889999999999999999986 345 678999999999999999655565 578889999999999999999


Q ss_pred             cCCcccCCCC
Q 006559          202 QIPAWMSPFG  211 (640)
Q Consensus       202 ~ip~~~~~~~  211 (640)
                      .+|..+..+.
T Consensus       163 ~~~~~l~~l~  172 (549)
T 2z81_A          163 YQSQSLKSIR  172 (549)
T ss_dssp             ECTTTTTTCS
T ss_pred             cChhhhhccc
Confidence            9998876654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=4.6e-16  Score=174.58  Aligned_cols=149  Identities=15%  Similarity=0.212  Sum_probs=126.0

Q ss_pred             cEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcc
Q 006559           69 RVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS  146 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  146 (640)
                      .+..+++.++.++..+ ..+..+++|+.|+|++|.+++.++ .+..+++|++|+|++|.|++..|..|+++++|++|+|+
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  131 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  131 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence            3456677777776644 557889999999999999999776 79999999999999999999888899999999999999


Q ss_pred             cCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCCCCCCCCC
Q 006559          147 HNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGN  218 (640)
Q Consensus       147 ~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~gn  218 (640)
                      +|.++ .+|...|.++++|++|+|++|.+++.+|..+..+++|+.|+|++|.|++..+..+..+....+.+|
T Consensus       132 ~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          132 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN  202 (597)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSS
T ss_pred             CCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccC
Confidence            99999 466566799999999999999999999999999999999999999999865555544433333333

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.64  E-value=5.3e-15  Score=142.45  Aligned_cols=148  Identities=20%  Similarity=0.185  Sum_probs=122.5

Q ss_pred             EEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCC
Q 006559           72 KLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAY  150 (640)
Q Consensus        72 ~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l  150 (640)
                      .++..+++++..+..  ..++|+.|+|++|.+++.++ .+..+++|++|+|++|++++..+..|.++++|++|+|++|++
T Consensus        11 ~v~c~~~~l~~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           11 TVECYSQGRTSVPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             EEECCSSCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEecCCCccCCCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            567777777765533  35689999999999998776 478999999999999999977777789999999999999999


Q ss_pred             CCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCC---CCCCCCCcccC
Q 006559          151 EGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFG---GSSFAGNKNLC  222 (640)
Q Consensus       151 ~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~---~~~~~gn~~lc  222 (640)
                      ++ +|...+..+++|++|+|++|++++..+..+..+++|+.|++++|+|++..+..+..+.   ...+.+|+..|
T Consensus        89 ~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A           89 QS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             Cc-cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence            95 5546789999999999999999988888888999999999999999977665555443   33455665544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.64  E-value=7.3e-16  Score=157.81  Aligned_cols=141  Identities=20%  Similarity=0.140  Sum_probs=101.5

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCC--CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNL--NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDL  145 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  145 (640)
                      .++..|+|+++.++..+..+..+++|+.|+|++|.+++.++  .+..+++|++|+|++|.+++..|..+.++++|+.|+|
T Consensus        78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  157 (306)
T 2z66_A           78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  157 (306)
T ss_dssp             SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred             cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence            35777788887777655567777788888888887776553  5677777777777777777777777777777777777


Q ss_pred             ccCCCCC-CCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCC
Q 006559          146 SHNAYEG-EIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSP  209 (640)
Q Consensus       146 s~N~l~g-~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~  209 (640)
                      ++|.+++ .+| ..+..+++|++|+|++|++++..|..+..+++|+.|+|++|++++..+..+..
T Consensus       158 ~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  221 (306)
T 2z66_A          158 AGNSFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC  221 (306)
T ss_dssp             TTCEEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred             CCCccccccch-hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence            7777765 344 56777777777777777777776777777777777777777777655544443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.63  E-value=2.5e-15  Score=152.25  Aligned_cols=143  Identities=17%  Similarity=0.186  Sum_probs=125.3

Q ss_pred             CcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEccccc-ccccCCccCCCCCCCCEEE
Q 006559           68 HRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNR-FTGTFPSGVSSLRHLRRVD  144 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~L~  144 (640)
                      ..+..|+|+++.+++.. ..+..+++|+.|+|++|.+++..+ .+..+++|++|+|++|. +....|..|.++++|+.|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            46889999999998765 568999999999999999998754 68999999999999998 7776788999999999999


Q ss_pred             cccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCC
Q 006559          145 LSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFG  211 (640)
Q Consensus       145 Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~  211 (640)
                      |++|.+++..| ..+.++++|++|+|++|++++..+..+..+++|+.|+|++|+|++..+..+..+.
T Consensus       112 l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  177 (285)
T 1ozn_A          112 LDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH  177 (285)
T ss_dssp             CTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CCCCcCCEECH-hHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence            99999997555 7789999999999999999988888888899999999999999977666665443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.63  E-value=1.9e-15  Score=163.61  Aligned_cols=152  Identities=22%  Similarity=0.225  Sum_probs=89.4

Q ss_pred             CCCceEecCC---------CCcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEccccc
Q 006559           57 SWRGVTCNPS---------THRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNR  125 (640)
Q Consensus        57 ~w~gv~C~~~---------~~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~  125 (640)
                      .|..|.|...         ...+..|+|+++.+++.. ..|.++++|+.|+|++|.+++.++ .+..+++|++|+|++|+
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            3678888643         236788889888887643 456666667777776666665443 45555555555555555


Q ss_pred             ccccCCccCCCCCCCCEEEcccCCCCCCCCch-----------------------------------------------h
Q 006559          126 FTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMT-----------------------------------------------E  158 (640)
Q Consensus       126 l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~-----------------------------------------------~  158 (640)
                      |++..+..|.++++|+.|+|++|++++ +|..                                               .
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~  213 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN  213 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC
T ss_pred             CCccChhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc
Confidence            554444444455555555555544431 1111                                               1


Q ss_pred             cCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCC
Q 006559          159 LTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSP  209 (640)
Q Consensus       159 ~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~  209 (640)
                      +..+++|+.|+|++|+|++..|..+..+++|+.|+|++|++++..|..+..
T Consensus       214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  264 (452)
T 3zyi_A          214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG  264 (452)
T ss_dssp             CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC
Confidence            333445555666666666666666666677777777777776666655443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.63  E-value=5.5e-16  Score=164.51  Aligned_cols=141  Identities=16%  Similarity=0.232  Sum_probs=120.7

Q ss_pred             cEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcc
Q 006559           69 RVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS  146 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  146 (640)
                      .+..+++.++.++..+ ..+..+++|++|+|++|.+++.++ .+..+++|++|+|++|.+++..|..|+++++|++|+|+
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  125 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  125 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence            4556777777776544 457889999999999999998766 78999999999999999999888889999999999999


Q ss_pred             cCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCC
Q 006559          147 HNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPF  210 (640)
Q Consensus       147 ~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~  210 (640)
                      +|.++ .+|...+.++++|++|+|++|.+++..+..+..+++|+.|++++|++++.-...+..+
T Consensus       126 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L  188 (390)
T 3o6n_A          126 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL  188 (390)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTC
T ss_pred             CCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccccccccc
Confidence            99998 5775667899999999999999999888889999999999999999987543444333

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=4.8e-16  Score=144.39  Aligned_cols=136  Identities=26%  Similarity=0.257  Sum_probs=115.2

Q ss_pred             CcEEEEEeCCCCCC--CCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEc
Q 006559           68 HRVIKLVLEDLDLT--GPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDL  145 (640)
Q Consensus        68 ~~v~~l~l~~~~l~--g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  145 (640)
                      .++..|+|+++.++  ..+..+..+++|+.|+|++|.+++. ..+..+++|++|+|++|.+++.+|..+.++++|+.|+|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            46888999999988  4445678899999999999999887 77889999999999999999888888888999999999


Q ss_pred             ccCCCCCCCCchhcCCCCCCcEEEccCCcceeccc---CCcCCCCCCcEEEcccCcCcccCCc
Q 006559          146 SHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLY---SVNSSSRSILDFNVSNNQLSGQIPA  205 (640)
Q Consensus       146 s~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~---~~~~~~~~L~~l~ls~N~l~g~ip~  205 (640)
                      ++|++++..+...+..+++|++|+|++|.+++..+   ..+..+++|+.|++++|.+. .+|.
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            99999863222578899999999999999997665   46788999999999999986 3443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=1.4e-16  Score=182.22  Aligned_cols=178  Identities=22%  Similarity=0.227  Sum_probs=118.6

Q ss_pred             hhhHHHHHHhhhcCCCCC-CCCCCCCCCCCCCCCCCCceEecCCCCcEEEEEeCCCCCCC--------------------
Q 006559           24 YSDISTLLSFKASVTGSS-DSLSSWVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTG--------------------   82 (640)
Q Consensus        24 ~~~~~~ll~~k~~~~~~~-~~~~sW~~~~~~c~~~w~gv~C~~~~~~v~~l~l~~~~l~g--------------------   82 (640)
                      ..+.++|+++........ .....|.....++ ..|.++++..  .+++.|+|.++++..                    
T Consensus       131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~  207 (727)
T 4b8c_D          131 DCTKQALMEMADTLTDSKTAKKQQPTGDSTPS-GTATNSAVST--PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDD  207 (727)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred             ccchhhhhhhhhhcccccCcccCCCcCCCCcc-ccCCCceecC--CccceEEeeCCCCCcchhhHhhcCccCcccccCcc
Confidence            456778888887763211 1122563333333 2798888875  356666664443322                    


Q ss_pred             --------CchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCC
Q 006559           83 --------PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEI  154 (640)
Q Consensus        83 --------~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~  154 (640)
                              +...+..++.|+.|+|++|.+...+..+..+++|++|+|++|.|+ .+|..|++|++|+.|||++|.|+ .+
T Consensus       208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~l  285 (727)
T 4b8c_D          208 DIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SL  285 (727)
T ss_dssp             --------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SC
T ss_pred             ccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-cc
Confidence                    234577889999999999999977777889999999999999999 89999999999999999999999 78


Q ss_pred             CchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccC
Q 006559          155 PMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMS  208 (640)
Q Consensus       155 p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~  208 (640)
                      | ..+++|++|++|+|++|.|+ .+|..+..+++|+.|+|++|.|+|.+|..+.
T Consensus       286 p-~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          286 P-AELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             C-SSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred             C-hhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence            8 67999999999999999997 7788899999999999999999999987663

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.61  E-value=3.2e-15  Score=151.82  Aligned_cols=152  Identities=27%  Similarity=0.269  Sum_probs=130.0

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .++..|+|+++.+++... ...+++|+.|+|++|.|+..+..+..+++|++|+|++|+|++..|..|.++++|+.|+|++
T Consensus        55 ~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~  133 (290)
T 1p9a_G           55 TRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG  133 (290)
T ss_dssp             TTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT
T ss_pred             CCCCEEECCCCccCcccC-CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC
Confidence            478899999999987554 3889999999999999998877889999999999999999988888899999999999999


Q ss_pred             CCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCC---CCCCCCCcccC
Q 006559          148 NAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFG---GSSFAGNKNLC  222 (640)
Q Consensus       148 N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~---~~~~~gn~~lc  222 (640)
                      |++++ +|...|..+++|+.|+|++|+|++..+..+..+++|+.|+|++|+|+ .+|..+....   ...+.+|+..|
T Consensus       134 N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          134 NELKT-LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             SCCCC-CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCCCc-cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            99995 56577889999999999999999877777888999999999999999 6777665433   23345666555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.61  E-value=1.6e-15  Score=171.12  Aligned_cols=141  Identities=16%  Similarity=0.142  Sum_probs=125.7

Q ss_pred             CcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEc
Q 006559           68 HRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDL  145 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  145 (640)
                      ..++.|+|++|.+++.. ..|.++++|++|+|++|.|++.++ .|.++++|++|+|++|+|++..|..|.++++|++|+|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            36899999999999865 679999999999999999998776 5899999999999999999887788999999999999


Q ss_pred             ccCCCCCCCCchhcCCCCCCcEEEccCCccee-cccCCcCCCCCCcEEEcccCcCcccCCcccCC
Q 006559          146 SHNAYEGEIPMTELTRLPNLLTLRLEDNRFTG-TLYSVNSSSRSILDFNVSNNQLSGQIPAWMSP  209 (640)
Q Consensus       146 s~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g-~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~  209 (640)
                      ++|++++ +|...|+++++|++|+|++|.+++ .+|..+..+++|+.|++++|+|++..|..+..
T Consensus       132 s~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~  195 (635)
T 4g8a_A          132 VETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV  195 (635)
T ss_dssp             TTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred             CCCcCCC-CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccc
Confidence            9999996 554679999999999999999986 46777888999999999999999988876643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.61  E-value=2e-15  Score=164.70  Aligned_cols=153  Identities=20%  Similarity=0.193  Sum_probs=131.3

Q ss_pred             CCCceEecCC---------CCcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEccccc
Q 006559           57 SWRGVTCNPS---------THRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNR  125 (640)
Q Consensus        57 ~w~gv~C~~~---------~~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~  125 (640)
                      .|..|.|...         ...+..|+|+++.+++.. ..|..+++|+.|+|++|.+++..+ .+.++++|++|+|++|.
T Consensus        12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            5788999743         236788999999998864 678999999999999999998755 68999999999999999


Q ss_pred             ccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCc
Q 006559          126 FTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPA  205 (640)
Q Consensus       126 l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~  205 (640)
                      +++..+..|.++++|+.|+|++|++++..| ..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+.
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCCh-hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            997766778999999999999999997666 7789999999999999999998888899999999999999999876555


Q ss_pred             ccCCC
Q 006559          206 WMSPF  210 (640)
Q Consensus       206 ~~~~~  210 (640)
                      .+..+
T Consensus       171 ~l~~l  175 (477)
T 2id5_A          171 ALSHL  175 (477)
T ss_dssp             HHTTC
T ss_pred             Hhccc
Confidence            55443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.60  E-value=3.6e-16  Score=182.56  Aligned_cols=134  Identities=27%  Similarity=0.312  Sum_probs=115.9

Q ss_pred             ccCCCCCCEEeCCCCcCCCCCC--CCCCCCCCcEEEccccccc-----ccCCccCCCCCCCCEEEcccCCCCCCCCchhc
Q 006559           87 LSRLTQLRLLSLKNNLLSSSNL--NLSSWPHLKHLYLSHNRFT-----GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTEL  159 (640)
Q Consensus        87 l~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~-----g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~  159 (640)
                      +..+++|+.|+|++|.+++.++  .+..+++|+.|+|++|.++     +..|..|.++++|+.|+|++|++++..| ..+
T Consensus       422 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~  500 (844)
T 3j0a_A          422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP-GVF  500 (844)
T ss_dssp             HTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCT-TSS
T ss_pred             hhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccCh-hHc
Confidence            5588999999999999987654  3667899999999999997     4455678899999999999999997555 778


Q ss_pred             CCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCCCCCCCCCcccCC
Q 006559          160 TRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCG  223 (640)
Q Consensus       160 ~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~gn~~lcg  223 (640)
                      ..+++|+.|+|++|+|++.++..+.  ++|+.|+|++|+|+|.+|..+..+....+.+|+..|.
T Consensus       501 ~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~  562 (844)
T 3j0a_A          501 SHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICE  562 (844)
T ss_dssp             SSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCS
T ss_pred             cchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCEEEecCCCcccc
Confidence            9999999999999999987777764  8999999999999999999888877777888888873

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.60  E-value=4.1e-15  Score=167.18  Aligned_cols=141  Identities=16%  Similarity=0.117  Sum_probs=128.0

Q ss_pred             CcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEc
Q 006559           68 HRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDL  145 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  145 (640)
                      .+++.|+|+++.+++.. ..+.++++|++|+|++|.+++.++ .+.++++|++|+|++|.+++..|..|+++++|++|+|
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            57899999999998865 489999999999999999998766 6899999999999999999998999999999999999


Q ss_pred             ccCCCCCCCCchhcCCCCCCcEEEccCCccee-cccCCcCCCCCCcEEEcccCcCcccCCcccCC
Q 006559          146 SHNAYEGEIPMTELTRLPNLLTLRLEDNRFTG-TLYSVNSSSRSILDFNVSNNQLSGQIPAWMSP  209 (640)
Q Consensus       146 s~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g-~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~  209 (640)
                      ++|.+++..| ..++++++|++|+|++|.+++ .+|..+..+++|+.|++++|++++..|..+..
T Consensus       112 ~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  175 (606)
T 3vq2_A          112 VETKLASLES-FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF  175 (606)
T ss_dssp             TTSCCCCSSS-SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH
T ss_pred             cCCccccccc-cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh
Confidence            9999996544 679999999999999999987 67999999999999999999999988876543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.59  E-value=1.8e-15  Score=149.05  Aligned_cols=150  Identities=15%  Similarity=0.224  Sum_probs=127.1

Q ss_pred             CCCCC-CCceE--ecC------CCCcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCc-CCCCCC-CCCCCCCCcEEE
Q 006559           53 PCFDS-WRGVT--CNP------STHRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNL-LSSSNL-NLSSWPHLKHLY  120 (640)
Q Consensus        53 ~c~~~-w~gv~--C~~------~~~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~-l~~~~~-~~~~l~~L~~L~  120 (640)
                      .|.|. |.++.  |..      -...+..|+|.++.+++.. ..+..+++|+.|+|++|. +++.++ .+..+++|++|+
T Consensus         7 ~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~   86 (239)
T 2xwt_C            7 PCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE   86 (239)
T ss_dssp             SCSEEECSTTEEEECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEE
T ss_pred             CCeeCCCCcceeEccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEE
Confidence            45443 36555  854      1236889999999998865 478999999999999997 887766 688999999999


Q ss_pred             ccc-ccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCc---EEEccCC-cceecccCCcCCCCCCc-EEEc
Q 006559          121 LSH-NRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLL---TLRLEDN-RFTGTLYSVNSSSRSIL-DFNV  194 (640)
Q Consensus       121 Ls~-N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~---~L~L~~N-~l~g~~~~~~~~~~~L~-~l~l  194 (640)
                      |++ |.+++..+..|.++++|+.|+|++|++++ +| . +..+++|+   +|++++| ++++..+..+..+++|+ .|++
T Consensus        87 l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l  163 (239)
T 2xwt_C           87 IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL  163 (239)
T ss_dssp             EEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred             CCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-cc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence            999 99998777889999999999999999996 77 3 88888888   9999999 99988888899999999 9999


Q ss_pred             ccCcCcccCCcc
Q 006559          195 SNNQLSGQIPAW  206 (640)
Q Consensus       195 s~N~l~g~ip~~  206 (640)
                      ++|+++ .+|..
T Consensus       164 ~~n~l~-~i~~~  174 (239)
T 2xwt_C          164 YNNGFT-SVQGY  174 (239)
T ss_dssp             CSCCCC-EECTT
T ss_pred             CCCCCc-ccCHh
Confidence            999998 66654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.59  E-value=6.6e-15  Score=158.82  Aligned_cols=149  Identities=20%  Similarity=0.213  Sum_probs=82.0

Q ss_pred             CCCceEecCC---------CCcEEEEEeCCCCCCCCc-------------------------hhccCCCCCCEEeCCCCc
Q 006559           57 SWRGVTCNPS---------THRVIKLVLEDLDLTGPA-------------------------EVLSRLTQLRLLSLKNNL  102 (640)
Q Consensus        57 ~w~gv~C~~~---------~~~v~~l~l~~~~l~g~~-------------------------~~l~~l~~L~~L~Ls~N~  102 (640)
                      .|..|.|...         ...+..|+|+++.+++..                         ..|..+++|+.|+|++|.
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            4678888642         124556666666655422                         345556666666666666


Q ss_pred             CCCCCC-CCCCCCCCcEEEcccccccccCCccCC-------------------------CCCCCCEEEcccCCCCCCCCc
Q 006559          103 LSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVS-------------------------SLRHLRRVDLSHNAYEGEIPM  156 (640)
Q Consensus       103 l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~-------------------------~l~~L~~L~Ls~N~l~g~~p~  156 (640)
                      |++.++ .+..+++|++|+|++|.++...+..|.                         ++++|+.|+|++|+++ .+| 
T Consensus       124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-  201 (440)
T 3zyj_A          124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-  201 (440)
T ss_dssp             CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-
T ss_pred             CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-
Confidence            665544 366667777777777766544332333                         3333333333333333 222 


Q ss_pred             hhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccC
Q 006559          157 TELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMS  208 (640)
Q Consensus       157 ~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~  208 (640)
                       .+..+++|+.|+|++|++++..|..+..+++|+.|+|++|+|++..|..+.
T Consensus       202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  252 (440)
T 3zyj_A          202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD  252 (440)
T ss_dssp             -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST
T ss_pred             -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhc
Confidence             234445556666666666666566666666666666666666655554443

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.59  E-value=5.3e-16  Score=161.30  Aligned_cols=132  Identities=14%  Similarity=0.090  Sum_probs=91.5

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEecccc----------------chHHH--------HHHHHHHhccCCCccccee
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERK----------------KKREV--------DEWLRVIGGLRHSNIVSIR  393 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~----------------~~~~~--------~~e~~~l~~l~H~niv~l~  393 (640)
                      ...||+|+||.||+|...+|+.||||+++...                .....        ..|.+.|.++.+.++....
T Consensus       100 ~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~vp~  179 (397)
T 4gyi_A          100 GSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFPVPE  179 (397)
T ss_dssp             EEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCC
T ss_pred             cCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCCCCe
Confidence            46799999999999999899999999875320                00111        2344445555433332111


Q ss_pred             EEEEcCCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCC
Q 006559          394 AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGN  473 (640)
Q Consensus       394 ~~~~~~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~  473 (640)
                      -+..  ...+|||||++++.|.++....           ....++.|++.+|.|||.   .+||||||||.|||+++++.
T Consensus       180 p~~~--~~~~LVME~i~G~~L~~l~~~~-----------~~~~l~~qll~~l~~lH~---~gIVHrDLKp~NILl~~dgd  243 (397)
T 4gyi_A          180 PIAQ--SRHTIVMSLVDALPMRQVSSVP-----------DPASLYADLIALILRLAK---HGLIHGDFNEFNILIREEKD  243 (397)
T ss_dssp             EEEE--ETTEEEEECCSCEEGGGCCCCS-----------CHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEEEEEC
T ss_pred             eeec--cCceEEEEecCCccHhhhcccH-----------HHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHEEEeCCCC
Confidence            1111  1237999999998887654311           234578999999999995   45999999999999987763


Q ss_pred             ----------eEEccCCccccc
Q 006559          474 ----------ACISDIGVHQLF  485 (640)
Q Consensus       474 ----------~kl~DfGl~~~~  485 (640)
                                +.|+||+-+-..
T Consensus       244 ~~d~~~~~~~~~iID~~Q~V~~  265 (397)
T 4gyi_A          244 AEDPSSITLTPIIIXFPQMVSM  265 (397)
T ss_dssp             SSCTTSEEEEEEECCCTTCEET
T ss_pred             cccccccccceEEEEeCCcccC
Confidence                      889999865443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.59  E-value=3.8e-15  Score=161.27  Aligned_cols=140  Identities=16%  Similarity=0.164  Sum_probs=87.7

Q ss_pred             CcEEEEEeCCCCCCCCch-----------hcc--CCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCcc
Q 006559           68 HRVIKLVLEDLDLTGPAE-----------VLS--RLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSG  133 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~-----------~l~--~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~  133 (640)
                      .++..+++.++.+.+...           .+.  ..++|+.|+|++|.+.+.++ .+..+++|++|+|++|.+++..|..
T Consensus       239 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  318 (455)
T 3v47_A          239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA  318 (455)
T ss_dssp             CCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred             cceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH
Confidence            466777776664443210           111  22567777777777766544 4666677777777777777666666


Q ss_pred             CCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccC
Q 006559          134 VSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMS  208 (640)
Q Consensus       134 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~  208 (640)
                      |.++++|+.|+|++|.+++..| ..+..+++|++|+|++|++++..|..+..+++|+.|+|++|+|++..+..+.
T Consensus       319 ~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  392 (455)
T 3v47_A          319 FWGLTHLLKLNLSQNFLGSIDS-RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD  392 (455)
T ss_dssp             TTTCTTCCEEECCSSCCCEECG-GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             hcCcccCCEEECCCCccCCcCh-hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc
Confidence            6777777777777777764333 5566677777777777777766666666667777777777777654444433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.59  E-value=3.2e-15  Score=168.01  Aligned_cols=139  Identities=17%  Similarity=0.134  Sum_probs=71.1

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCC--CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcc
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNL--NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS  146 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  146 (640)
                      ++..|+|+++.+++.+..+..+++|+.|+|++|.+.+.++  .+..+++|++|+|++|.+++.+|..+.++++|+.|+|+
T Consensus       377 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  456 (606)
T 3vq2_A          377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA  456 (606)
T ss_dssp             CCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred             cccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence            4556666666655544445555555555555555554433  34455555555555555555555555555555555555


Q ss_pred             cCCCCCC-CCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccC
Q 006559          147 HNAYEGE-IPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMS  208 (640)
Q Consensus       147 ~N~l~g~-~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~  208 (640)
                      +|.+++. +| ..+..+++|+.|+|++|++++.+|..+..+++|+.|++++|++++.+|..+.
T Consensus       457 ~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  518 (606)
T 3vq2_A          457 GNSFKDNTLS-NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN  518 (606)
T ss_dssp             TCEEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT
T ss_pred             CCcCCCcchH-HhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc
Confidence            5555442 23 3444455555555555555554444444455555555555555544444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.58  E-value=1.3e-14  Score=137.95  Aligned_cols=126  Identities=18%  Similarity=0.261  Sum_probs=108.6

Q ss_pred             CEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCc-cCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccC
Q 006559           94 RLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPS-GVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLED  172 (640)
Q Consensus        94 ~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~  172 (640)
                      +.|++++|.|+..+..+..  +|++|+|++|+|++..+. .|.++++|+.|+|++|++++..| ..|..+++|++|+|++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-NAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH-hHcCCcccCCEEECCC
Confidence            6899999999887665543  899999999999987775 48999999999999999998767 7899999999999999


Q ss_pred             CcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCCCC---CCCCCcccC
Q 006559          173 NRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGS---SFAGNKNLC  222 (640)
Q Consensus       173 N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~~~---~~~gn~~lc  222 (640)
                      |+|++..+..+..+++|+.|+|++|+|++.+|..+..++..   .+.+|+..|
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            99999999989999999999999999999999887765443   345565443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=9.9e-16  Score=139.22  Aligned_cols=126  Identities=25%  Similarity=0.232  Sum_probs=70.2

Q ss_pred             cEEEEEeCCCCCC--CCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcc
Q 006559           69 RVIKLVLEDLDLT--GPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS  146 (640)
Q Consensus        69 ~v~~l~l~~~~l~--g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  146 (640)
                      ++..|+++++.++  ..+..+..+++|+.|+|++|.+++. ..+..+++|++|+|++|.+++.+|..+.++++|+.|+|+
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls   96 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS   96 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence            4555566666555  2234445566666666666666555 455556666666666666665555555556666666666


Q ss_pred             cCCCCCCCCchhcCCCCCCcEEEccCCcceeccc---CCcCCCCCCcEEEcc
Q 006559          147 HNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLY---SVNSSSRSILDFNVS  195 (640)
Q Consensus       147 ~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~---~~~~~~~~L~~l~ls  195 (640)
                      +|.+++......+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            6666542111345556666666666666655443   344555566665554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.57  E-value=4.6e-15  Score=141.63  Aligned_cols=129  Identities=17%  Similarity=0.240  Sum_probs=106.5

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccC
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN  148 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  148 (640)
                      ++..|+++++.++... .+..+++|+.|+|++|.+... +.+..+++|++|+|++|.+++..|..+.++++|+.|+|++|
T Consensus        45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n  122 (197)
T 4ezg_A           45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS  122 (197)
T ss_dssp             TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred             CccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence            5778888888887533 688889999999999976554 36788899999999999998888888999999999999999


Q ss_pred             CCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcc
Q 006559          149 AYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSG  201 (640)
Q Consensus       149 ~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g  201 (640)
                      ++++..| ..+..+++|++|+|++|.+.+.+| .+..+++|+.|++++|++++
T Consensus       123 ~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          123 AHDDSIL-TKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             BCBGGGH-HHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred             ccCcHhH-HHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC
Confidence            9987666 678889999999999998444455 57778899999999999886

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.56  E-value=1.5e-14  Score=163.01  Aligned_cols=134  Identities=19%  Similarity=0.256  Sum_probs=114.8

Q ss_pred             eCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCC
Q 006559           75 LEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGE  153 (640)
Q Consensus        75 l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~  153 (640)
                      -.+.+|+..+..+-  ++++.|||++|.|++.++ .|.++++|++|+|++|+|++..|..|.+|++|++|+|++|+|++ 
T Consensus        38 c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-  114 (635)
T 4g8a_A           38 CMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-  114 (635)
T ss_dssp             CTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-
T ss_pred             CCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-
Confidence            34456665443331  479999999999999876 69999999999999999999888899999999999999999995 


Q ss_pred             CCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcc-cCCcccCCCC
Q 006559          154 IPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSG-QIPAWMSPFG  211 (640)
Q Consensus       154 ~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g-~ip~~~~~~~  211 (640)
                      +|...|.++++|++|+|++|++++..+..+..+++|+.|+|++|+|++ .+|..+..+.
T Consensus       115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~  173 (635)
T 4g8a_A          115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT  173 (635)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred             CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccch
Confidence            665789999999999999999999888889999999999999999976 4677665443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.55  E-value=9.7e-15  Score=166.46  Aligned_cols=139  Identities=22%  Similarity=0.246  Sum_probs=114.5

Q ss_pred             CcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEc
Q 006559           68 HRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDL  145 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  145 (640)
                      .+++.|+|+++.+++.. ..+.++++|++|+|++|.+++.++ .+.++++|++|+|++|.+++..+..|+++++|++|+|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            47889999999988866 468889999999999999888765 4778888999999999888655557888899999999


Q ss_pred             ccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCccc
Q 006559          146 SHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWM  207 (640)
Q Consensus       146 s~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~  207 (640)
                      ++|++++ +|+..+.++++|++|+|++|.+++..|..+..+++|+.|++++|++++..|..+
T Consensus       105 ~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  165 (680)
T 1ziw_A          105 MSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL  165 (680)
T ss_dssp             CSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred             CCCccCc-cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHh
Confidence            9998875 444678888899999999998888888888888888888888888887766543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.55  E-value=1.1e-14  Score=170.08  Aligned_cols=151  Identities=19%  Similarity=0.161  Sum_probs=130.7

Q ss_pred             CCCCceEecCCCCcEEEEEeCCCCCCCC-chhccCCCCCCEEeCCCCcCCCC--CCCCCCCCCCcEEEcccccccccCCc
Q 006559           56 DSWRGVTCNPSTHRVIKLVLEDLDLTGP-AEVLSRLTQLRLLSLKNNLLSSS--NLNLSSWPHLKHLYLSHNRFTGTFPS  132 (640)
Q Consensus        56 ~~w~gv~C~~~~~~v~~l~l~~~~l~g~-~~~l~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~Ls~N~l~g~~p~  132 (640)
                      ++|+.|-+  ...++..|+|++|.+++. +..+.++++|++|+|++|.+.+.  +..+.++++|++|+|++|.+++..|.
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            47888877  335899999999999875 46799999999999999977654  33699999999999999999999999


Q ss_pred             cCCCCCCCCEEEcccCCCCCCCCc-hhcCCCCCCcEEEccCCcceeccc-CCcCCCCCCcEEEcccCcCcccCCcccC
Q 006559          133 GVSSLRHLRRVDLSHNAYEGEIPM-TELTRLPNLLTLRLEDNRFTGTLY-SVNSSSRSILDFNVSNNQLSGQIPAWMS  208 (640)
Q Consensus       133 ~~~~l~~L~~L~Ls~N~l~g~~p~-~~~~~l~~L~~L~L~~N~l~g~~~-~~~~~~~~L~~l~ls~N~l~g~ip~~~~  208 (640)
                      .|.++++|++|+|++|.+++.+|. ..+.++++|++|+|++|.+++..+ ..+.++++|+.|+|++|.+++..|..+.
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~  169 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE  169 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence            999999999999999999987762 238899999999999999998765 5688999999999999999998887654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.55  E-value=1.9e-14  Score=145.04  Aligned_cols=136  Identities=19%  Similarity=0.261  Sum_probs=95.3

Q ss_pred             CcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEc
Q 006559           68 HRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDL  145 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  145 (640)
                      .++..|+|+++.+++.. ..+..+++|+.|+|++|.+++.++ .+..+++|++|+|++|++++..+..+.++++|+.|+|
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  131 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  131 (276)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred             cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence            35777788887777644 467778888888888888877654 5777788888888888887766667777888888888


Q ss_pred             ccCCCCC-CCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCc----EEEcccCcCcccCC
Q 006559          146 SHNAYEG-EIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSIL----DFNVSNNQLSGQIP  204 (640)
Q Consensus       146 s~N~l~g-~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~----~l~ls~N~l~g~ip  204 (640)
                      ++|.+++ .+| ..+..+++|++|+|++|++++..+..+..+.+|+    .|++++|++++..+
T Consensus       132 ~~n~l~~~~l~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~  194 (276)
T 2z62_A          132 AHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP  194 (276)
T ss_dssp             CSSCCCCCCCC-GGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT
T ss_pred             cCCccceecCc-hhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc
Confidence            8888775 245 5677778888888888877776555544444443    55566665554443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.54  E-value=1.3e-14  Score=161.72  Aligned_cols=139  Identities=21%  Similarity=0.186  Sum_probs=81.6

Q ss_pred             EEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCC--CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccC
Q 006559           71 IKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNL--NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN  148 (640)
Q Consensus        71 ~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  148 (640)
                      ..|+|+++.+.+....+..+++|+.|+|++|.+.+.++  .+..+++|++|+|++|.+.+.+|..+.++++|+.|+|++|
T Consensus       376 ~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  455 (570)
T 2z63_A          376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN  455 (570)
T ss_dssp             CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             CEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence            33344444333333335555566666666665555433  3556666666666666666666666666666666666666


Q ss_pred             CCC-CCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCC
Q 006559          149 AYE-GEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPF  210 (640)
Q Consensus       149 ~l~-g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~  210 (640)
                      .++ +.+| ..+..+++|+.|+|++|++++..|..+..+++|+.|++++|++++..|..+..+
T Consensus       456 ~l~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  517 (570)
T 2z63_A          456 SFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL  517 (570)
T ss_dssp             EEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             cCccccch-hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence            665 3455 556666666666666666666666666666666666666666666555544433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.54  E-value=1e-14  Score=163.86  Aligned_cols=154  Identities=16%  Similarity=0.101  Sum_probs=132.1

Q ss_pred             CCceEecCC---------CCcEEEEEeCCCCCCCC-chhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccc
Q 006559           58 WRGVTCNPS---------THRVIKLVLEDLDLTGP-AEVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRF  126 (640)
Q Consensus        58 w~gv~C~~~---------~~~v~~l~l~~~~l~g~-~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l  126 (640)
                      +..|.|...         ...++.|+|+++.+++. +..+.++++|++|+|++|.+.+..+ .|.++++|++|+|++|.+
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   93 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL   93 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence            566778542         24789999999999986 4689999999999999999998755 699999999999999999


Q ss_pred             cccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcc
Q 006559          127 TGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAW  206 (640)
Q Consensus       127 ~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~  206 (640)
                      ++..|..|+++++|++|+|++|.+++..| ..+.++++|++|+|++|++++..++.+..+++|+.|++++|++++..|..
T Consensus        94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  172 (606)
T 3t6q_A           94 IFMAETALSGPKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED  172 (606)
T ss_dssp             SEECTTTTSSCTTCCEEECTTSCCSCGGG-SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred             cccChhhhcccccccEeeccccCcccCCc-chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence            99999999999999999999999996434 66899999999999999999855444445999999999999999888876


Q ss_pred             cCCCCC
Q 006559          207 MSPFGG  212 (640)
Q Consensus       207 ~~~~~~  212 (640)
                      ++.+..
T Consensus       173 ~~~l~~  178 (606)
T 3t6q_A          173 MSSLQQ  178 (606)
T ss_dssp             HHTTTT
T ss_pred             hhhhcc
Confidence            665543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.54  E-value=5.2e-15  Score=152.02  Aligned_cols=135  Identities=24%  Similarity=0.340  Sum_probs=67.5

Q ss_pred             cEEEEEeCCCCCCCCc-hhc--cCCCCCCEEeCCCCcCCCCCCCCCCC-----CCCcEEEcccccccccCCccCCCCCCC
Q 006559           69 RVIKLVLEDLDLTGPA-EVL--SRLTQLRLLSLKNNLLSSSNLNLSSW-----PHLKHLYLSHNRFTGTFPSGVSSLRHL  140 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~-~~l--~~l~~L~~L~Ls~N~l~~~~~~~~~l-----~~L~~L~Ls~N~l~g~~p~~~~~l~~L  140 (640)
                      ++..|+|+++.+++.. ..+  ..+++|+.|+|++|.+++.+..+..+     ++|++|+|++|++++..|..|+++++|
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L  175 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL  175 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence            4555555555555432 212  55555555555555555553333333     555555555555555555555555555


Q ss_pred             CEEEcccCCCCCCCCc-hhc--CCCCCCcEEEccCCccee--ccc-CCcCCCCCCcEEEcccCcCcccC
Q 006559          141 RRVDLSHNAYEGEIPM-TEL--TRLPNLLTLRLEDNRFTG--TLY-SVNSSSRSILDFNVSNNQLSGQI  203 (640)
Q Consensus       141 ~~L~Ls~N~l~g~~p~-~~~--~~l~~L~~L~L~~N~l~g--~~~-~~~~~~~~L~~l~ls~N~l~g~i  203 (640)
                      +.|+|++|++.|.++. ..+  ..+++|++|+|++|+|++  .++ ..+..+++|+.|+|++|+|++.+
T Consensus       176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence            5555555555543210 122  455555555555555552  111 22234455555555555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.54  E-value=3.9e-14  Score=131.77  Aligned_cols=106  Identities=23%  Similarity=0.274  Sum_probs=59.7

Q ss_pred             EEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCc
Q 006559           95 LLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNR  174 (640)
Q Consensus        95 ~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~  174 (640)
                      .|++++|.|+..+..+  .++|++|+|++|+|++..|..|.++++|+.|+|++|+|++ +|...|..+++|++|+|++|+
T Consensus        13 ~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           13 TVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCCCc
Confidence            3444444444443333  2455666666666665555556666666666666666653 333445566666666666666


Q ss_pred             ceecccCCcCCCCCCcEEEcccCcCcccC
Q 006559          175 FTGTLYSVNSSSRSILDFNVSNNQLSGQI  203 (640)
Q Consensus       175 l~g~~~~~~~~~~~L~~l~ls~N~l~g~i  203 (640)
                      |++..+..+..+++|+.|+|++|.|++..
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            66555555555666666666666665543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.53  E-value=7.2e-15  Score=160.43  Aligned_cols=115  Identities=18%  Similarity=0.095  Sum_probs=67.7

Q ss_pred             CCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCC-CCCCCCEEEcccCCCCCCCCchhcCCCCCCc
Q 006559           89 RLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVS-SLRHLRRVDLSHNAYEGEIPMTELTRLPNLL  166 (640)
Q Consensus        89 ~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~  166 (640)
                      .+++|+.|+|++|.|++.++ .++.+++|++|+|++|.|++.+|..+. ++++|+.|+|++|.+++. |  .+..+++|+
T Consensus       118 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~--~~~~l~~L~  194 (487)
T 3oja_A          118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K--GQVVFAKLK  194 (487)
T ss_dssp             CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E--CCCCCTTCC
T ss_pred             ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c--ccccCCCCC
Confidence            34556666666666665533 455666666666666666666555554 566666666666666643 2  133466666


Q ss_pred             EEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccC
Q 006559          167 TLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMS  208 (640)
Q Consensus       167 ~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~  208 (640)
                      .|+|++|.|++.+|. +..+++|+.|+|++|+|++ +|.++.
T Consensus       195 ~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~  234 (487)
T 3oja_A          195 TLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALR  234 (487)
T ss_dssp             EEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCC
T ss_pred             EEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhc
Confidence            666666666654433 5556666666666666664 454443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.53  E-value=2.8e-15  Score=169.32  Aligned_cols=137  Identities=19%  Similarity=0.285  Sum_probs=86.3

Q ss_pred             cEEEEEeCCCCCCC------------------Cchhcc--CCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEccccc-c
Q 006559           69 RVIKLVLEDLDLTG------------------PAEVLS--RLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNR-F  126 (640)
Q Consensus        69 ~v~~l~l~~~~l~g------------------~~~~l~--~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~-l  126 (640)
                      ++..|+|+++.++|                  .++.++  ++++|++|+|++|.+.+..| .++++++|++|+|++|+ |
T Consensus       207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l  286 (636)
T 4eco_A          207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI  286 (636)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence            45566666666666                  445555  66666666666666665443 46666666666666666 6


Q ss_pred             cc-cCCccCCCC------CCCCEEEcccCCCCCCCCch--hcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccC
Q 006559          127 TG-TFPSGVSSL------RHLRRVDLSHNAYEGEIPMT--ELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNN  197 (640)
Q Consensus       127 ~g-~~p~~~~~l------~~L~~L~Ls~N~l~g~~p~~--~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N  197 (640)
                      +| .+|..++++      ++|+.|+|++|+++ .+| .  .++++++|++|+|++|+++|.+| .+..+++|+.|++++|
T Consensus       287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip-~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N  363 (636)
T 4eco_A          287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFP-VETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN  363 (636)
T ss_dssp             CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCC-CHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS
T ss_pred             ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccC-chhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC
Confidence            66 666665554      66666666666666 566 3  56666666666666666666666 5556666666666666


Q ss_pred             cCcccCCcccCC
Q 006559          198 QLSGQIPAWMSP  209 (640)
Q Consensus       198 ~l~g~ip~~~~~  209 (640)
                      +++ .+|.++..
T Consensus       364 ~l~-~lp~~l~~  374 (636)
T 4eco_A          364 QIT-EIPANFCG  374 (636)
T ss_dssp             EEE-ECCTTSEE
T ss_pred             ccc-cccHhhhh
Confidence            666 56655443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.53  E-value=1.3e-14  Score=160.36  Aligned_cols=139  Identities=24%  Similarity=0.320  Sum_probs=110.1

Q ss_pred             CCCCCCCCCCC---CCCce-EecCCCCcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEc
Q 006559           46 SWVNSTDPCFD---SWRGV-TCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYL  121 (640)
Q Consensus        46 sW~~~~~~c~~---~w~gv-~C~~~~~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L  121 (640)
                      +|....++|..   .|.|+ .|..  .+++.|+|+++++++.+..+  +++|+.|+|++|.|+..+   ..+++|++|+|
T Consensus        35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~L  107 (571)
T 3cvr_A           35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDA  107 (571)
T ss_dssp             HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEEC
T ss_pred             HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEc
Confidence            56545556643   59999 7875  47999999999999866544  378999999999998655   56789999999


Q ss_pred             ccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcc
Q 006559          122 SHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSG  201 (640)
Q Consensus       122 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g  201 (640)
                      ++|+|++ +|. +.+  +|+.|+|++|+|++ +|.    .+++|+.|+|++|+|++ +|.   .+++|+.|+|++|+|++
T Consensus       108 s~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~  174 (571)
T 3cvr_A          108 CDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF  174 (571)
T ss_dssp             CSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             cCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence            9999987 777 665  89999999999986 773    57888888998888887 554   46788888888888887


Q ss_pred             cCCc
Q 006559          202 QIPA  205 (640)
Q Consensus       202 ~ip~  205 (640)
                       +|.
T Consensus       175 -lp~  177 (571)
T 3cvr_A          175 -LPE  177 (571)
T ss_dssp             -CCC
T ss_pred             -cch
Confidence             666

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.53  E-value=4.9e-14  Score=145.81  Aligned_cols=149  Identities=19%  Similarity=0.297  Sum_probs=120.8

Q ss_pred             CCCCCCCceEecCC---------CCcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEc
Q 006559           53 PCFDSWRGVTCNPS---------THRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYL  121 (640)
Q Consensus        53 ~c~~~w~gv~C~~~---------~~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L  121 (640)
                      .|.|+|+.+.|...         ...+..|+|+++.+++.. ..+.++++|++|+|++|.+++..+ .+..+++|++|+|
T Consensus        28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            45568999999742         236788999999998865 478999999999999999998744 7899999999999


Q ss_pred             ccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCccee--cccCCcCCCCCCcEEEcccCcC
Q 006559          122 SHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTG--TLYSVNSSSRSILDFNVSNNQL  199 (640)
Q Consensus       122 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g--~~~~~~~~~~~L~~l~ls~N~l  199 (640)
                      ++|.++ .+|..+.  ++|+.|+|++|.+++ ++...+.++++|+.|+|++|.++.  ..+..+..+++|+.|++++|++
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            999998 5666554  789999999999985 454778889999999999998863  6667777888888888888888


Q ss_pred             cccCCcc
Q 006559          200 SGQIPAW  206 (640)
Q Consensus       200 ~g~ip~~  206 (640)
                      +. +|..
T Consensus       184 ~~-l~~~  189 (330)
T 1xku_A          184 TT-IPQG  189 (330)
T ss_dssp             CS-CCSS
T ss_pred             cc-CCcc
Confidence            74 5543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.53  E-value=1.7e-14  Score=137.69  Aligned_cols=129  Identities=21%  Similarity=0.276  Sum_probs=110.1

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCC-CCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSS-NLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS  146 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  146 (640)
                      .++..|++.++.++.. +.+..+++|+.|+|++|.+++. +..+..+++|++|+|++|.+++..|..++.+++|+.|+|+
T Consensus        66 ~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~  144 (197)
T 4ezg_A           66 HNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS  144 (197)
T ss_dssp             TTCSEEEEESCCCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECC
T ss_pred             CCCCEEEccCCCCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEcc
Confidence            3688899999977654 4788999999999999999874 4579999999999999999999889999999999999999


Q ss_pred             cCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcc
Q 006559          147 HNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSG  201 (640)
Q Consensus       147 ~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g  201 (640)
                      +|.+.+.+|  .+..+++|+.|++++|++++..  .+..+++|+.|++++|++.+
T Consensus       145 ~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          145 YNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred             CCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence            998444666  5889999999999999999743  67779999999999999875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.52  E-value=5.2e-14  Score=145.80  Aligned_cols=148  Identities=22%  Similarity=0.330  Sum_probs=108.9

Q ss_pred             CCCCCCCceEecCC---------CCcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEc
Q 006559           53 PCFDSWRGVTCNPS---------THRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYL  121 (640)
Q Consensus        53 ~c~~~w~gv~C~~~---------~~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L  121 (640)
                      .|.|.|+.+.|...         ..++..|+|+++.+++.. ..+..+++|+.|+|++|.+++..+ .+..+++|++|+|
T Consensus        30 ~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           30 GCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             SCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             CCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            45568999999642         135777888888877653 467888888888888888887644 5788888888888


Q ss_pred             ccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcce--ecccCCcCCCCCCcEEEcccCcC
Q 006559          122 SHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT--GTLYSVNSSSRSILDFNVSNNQL  199 (640)
Q Consensus       122 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~--g~~~~~~~~~~~L~~l~ls~N~l  199 (640)
                      ++|.++ .+|..+.  ++|++|+|++|++++ +|...+..+++|+.|++++|.++  +..+..+..+ +|+.|++++|++
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            888887 5665554  788888888888874 55466788888888888888885  3556666666 777888888887


Q ss_pred             cccCCcc
Q 006559          200 SGQIPAW  206 (640)
Q Consensus       200 ~g~ip~~  206 (640)
                      ++ +|..
T Consensus       185 ~~-l~~~  190 (332)
T 2ft3_A          185 TG-IPKD  190 (332)
T ss_dssp             SS-CCSS
T ss_pred             Cc-cCcc
Confidence            75 4543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.52  E-value=1.2e-14  Score=131.87  Aligned_cols=113  Identities=17%  Similarity=0.227  Sum_probs=100.4

Q ss_pred             CCCCCCEEeCCCCcCC-C-CCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCc
Q 006559           89 RLTQLRLLSLKNNLLS-S-SNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLL  166 (640)
Q Consensus        89 ~l~~L~~L~Ls~N~l~-~-~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~  166 (640)
                      ..++|+.|+|++|.++ + .+..+..+++|++|+|++|.+++.  ..+.++++|+.|+|++|.+++.+| ..+..+++|+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~   91 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLE-VLAEKCPNLT   91 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTH-HHHHHCTTCC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHH-HHhhhCCCCC
Confidence            4578999999999998 4 445679999999999999999976  778999999999999999998777 6777899999


Q ss_pred             EEEccCCcceec-ccCCcCCCCCCcEEEcccCcCcccCC
Q 006559          167 TLRLEDNRFTGT-LYSVNSSSRSILDFNVSNNQLSGQIP  204 (640)
Q Consensus       167 ~L~L~~N~l~g~-~~~~~~~~~~L~~l~ls~N~l~g~ip  204 (640)
                      +|+|++|++++. .+..+..+++|+.|++++|++++..+
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            999999999984 45778889999999999999998765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.52  E-value=1e-13  Score=131.77  Aligned_cols=125  Identities=22%  Similarity=0.304  Sum_probs=106.2

Q ss_pred             CEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCC
Q 006559           94 RLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDN  173 (640)
Q Consensus        94 ~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N  173 (640)
                      +.+++++|.++..+..+.  ++|++|+|++|.|+ .+|..|.++++|+.|+|++|++++ ++...|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCE-eCHhHccCCCCCCEEECCCC
Confidence            578999999998766543  68999999999998 788999999999999999999996 44478999999999999999


Q ss_pred             cceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCC---CCCCCCCcccC
Q 006559          174 RFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFG---GSSFAGNKNLC  222 (640)
Q Consensus       174 ~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~---~~~~~gn~~lc  222 (640)
                      +|++..+..+..+++|+.|+|++|+|++..+..+..+.   ...+.+|+..|
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            99999988999999999999999999976665555443   34456676655

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.52  E-value=6.8e-14  Score=146.75  Aligned_cols=138  Identities=22%  Similarity=0.217  Sum_probs=118.6

Q ss_pred             CceEecCCCCcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCC-CC-CCCCCcEEEcccccccccCCccCCC
Q 006559           59 RGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLN-LS-SWPHLKHLYLSHNRFTGTFPSGVSS  136 (640)
Q Consensus        59 ~gv~C~~~~~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~-~~-~l~~L~~L~Ls~N~l~g~~p~~~~~  136 (640)
                      ..=.|..   +  .+++.+++|+..+..+.  ..|+.|+|++|.|++.++. +. .+++|+.|+|++|+|++..|..|.+
T Consensus        14 ~~C~C~~---~--~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~   86 (361)
T 2xot_A           14 ANCLCAS---N--ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP   86 (361)
T ss_dssp             TTCEEET---T--EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CCCEECC---C--EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC
Confidence            3556753   2  47888888887665443  4689999999999997764 55 8999999999999999988889999


Q ss_pred             CCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCC
Q 006559          137 LRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP  204 (640)
Q Consensus       137 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip  204 (640)
                      +++|+.|+|++|+|++ +|...|..+++|+.|+|++|+|++..|..+..+++|+.|+|++|+|++..+
T Consensus        87 l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  153 (361)
T 2xot_A           87 VPNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV  153 (361)
T ss_dssp             CTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred             CCCCCEEECCCCcCCc-CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH
Confidence            9999999999999985 554779999999999999999999999999999999999999999996433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.51  E-value=9.9e-15  Score=149.75  Aligned_cols=138  Identities=17%  Similarity=0.155  Sum_probs=97.0

Q ss_pred             CcEEEEEeCCCCCCCCc-----hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEccccccccc--C--CccCCCC
Q 006559           68 HRVIKLVLEDLDLTGPA-----EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGT--F--PSGVSSL  137 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-----~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~--~--p~~~~~l  137 (640)
                      .++..|+|++|.+++..     ..+..+++|+.|+|++|.+.+.++ .+..+++|++|+|++|++.+.  +  +..++++
T Consensus       117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  196 (310)
T 4glp_A          117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF  196 (310)
T ss_dssp             BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred             CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence            35677788888877632     233467888888888888877665 577888888888888887652  2  2234677


Q ss_pred             CCCCEEEcccCCCCCCCCc---hhcCCCCCCcEEEccCCcceecccCCcCCC---CCCcEEEcccCcCcccCCccc
Q 006559          138 RHLRRVDLSHNAYEGEIPM---TELTRLPNLLTLRLEDNRFTGTLYSVNSSS---RSILDFNVSNNQLSGQIPAWM  207 (640)
Q Consensus       138 ~~L~~L~Ls~N~l~g~~p~---~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~---~~L~~l~ls~N~l~g~ip~~~  207 (640)
                      ++|++|+|++|+++. +|.   ..+..+++|++|+|++|++++..|..+..+   ++|+.|+|++|+|+ .+|..+
T Consensus       197 ~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~  270 (310)
T 4glp_A          197 PAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL  270 (310)
T ss_dssp             CCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC
T ss_pred             CCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh
Confidence            888888888888862 331   124667788888888888887766665555   57888888888887 666654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.51  E-value=8.4e-14  Score=130.02  Aligned_cols=105  Identities=22%  Similarity=0.309  Sum_probs=62.9

Q ss_pred             EEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCc
Q 006559           95 LLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNR  174 (640)
Q Consensus        95 ~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~  174 (640)
                      .+++++|.|+..+..+.  ++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++ +|...|.++++|++|+|++|+
T Consensus        16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCCc
Confidence            45555555554444332  556666666666666666666666666666666666664 443445666666666666666


Q ss_pred             ceecccCCcCCCCCCcEEEcccCcCccc
Q 006559          175 FTGTLYSVNSSSRSILDFNVSNNQLSGQ  202 (640)
Q Consensus       175 l~g~~~~~~~~~~~L~~l~ls~N~l~g~  202 (640)
                      |++..+..+..+++|+.|+|++|.|...
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             cceeCHHHhccccCCCEEEeCCCCcccc
Confidence            6655555566666666666666666543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.51  E-value=4.7e-14  Score=153.71  Aligned_cols=143  Identities=17%  Similarity=0.165  Sum_probs=126.0

Q ss_pred             CcEEEEEeCCCCCCCC-chhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEc
Q 006559           68 HRVIKLVLEDLDLTGP-AEVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDL  145 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~-~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  145 (640)
                      .++..|+|+++.+++. +..+.++++|+.|+|++|.+++.++ .+..+++|++|+|++|.+++..|..|.++++|+.|+|
T Consensus        56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l  135 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV  135 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred             CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence            4788999999999876 4678999999999999999998876 4789999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCC
Q 006559          146 SHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFG  211 (640)
Q Consensus       146 s~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~  211 (640)
                      ++|.+++..| ..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+.
T Consensus       136 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~  200 (477)
T 2id5_A          136 GDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY  200 (477)
T ss_dssp             CCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCT
T ss_pred             CCCccceeCh-hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCc
Confidence            9999987555 7789999999999999999987777788899999999999999987776665443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.51  E-value=8e-14  Score=158.84  Aligned_cols=138  Identities=24%  Similarity=0.294  Sum_probs=111.7

Q ss_pred             hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccC----C----ccCCCCCCCCEEEcccCCCCCCCC
Q 006559           85 EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTF----P----SGVSSLRHLRRVDLSHNAYEGEIP  155 (640)
Q Consensus        85 ~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~----p----~~~~~l~~L~~L~Ls~N~l~g~~p  155 (640)
                      ..+..+++|+.|+|++|.+++.++ .+..+++|++|+|++|.+++..    |    ..|.++++|+.|+|++|+++ .+|
T Consensus       474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~  552 (680)
T 1ziw_A          474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIP  552 (680)
T ss_dssp             CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCC
T ss_pred             cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCC
Confidence            557788889999999999888766 4788899999999999988642    2    23788899999999999998 677


Q ss_pred             chhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcc----cCCCCCCCCCCCcccCC
Q 006559          156 MTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAW----MSPFGGSSFAGNKNLCG  223 (640)
Q Consensus       156 ~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~----~~~~~~~~~~gn~~lcg  223 (640)
                      ...|.++++|+.|+|++|++++..+..+..+++|+.|+|++|+|++..|..    +..+....+.+|+..|.
T Consensus       553 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred             HHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence            667889999999999999999877777888899999999999999877764    34555566778887774

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.51  E-value=7.9e-15  Score=150.63  Aligned_cols=110  Identities=19%  Similarity=0.204  Sum_probs=71.5

Q ss_pred             CCCCCCEEeCCCCcCCCCCC-CC--CCCCCCcEEEcccccccccCCccCCCC-----CCCCEEEcccCCCCCCCCchhcC
Q 006559           89 RLTQLRLLSLKNNLLSSSNL-NL--SSWPHLKHLYLSHNRFTGTFPSGVSSL-----RHLRRVDLSHNAYEGEIPMTELT  160 (640)
Q Consensus        89 ~l~~L~~L~Ls~N~l~~~~~-~~--~~l~~L~~L~Ls~N~l~g~~p~~~~~l-----~~L~~L~Ls~N~l~g~~p~~~~~  160 (640)
                      .+++|++|+|++|.+++..+ .+  ..+++|++|+|++|.+++. |..++++     ++|++|+|++|++++..| ..+.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~-~~~~  170 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSC-EQVR  170 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCT-TTCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchH-HHhc
Confidence            56777777777777765443 33  6677777777777777765 6655555     677777777777765443 5666


Q ss_pred             CCCCCcEEEccCCcceecc--cCCc--CCCCCCcEEEcccCcCc
Q 006559          161 RLPNLLTLRLEDNRFTGTL--YSVN--SSSRSILDFNVSNNQLS  200 (640)
Q Consensus       161 ~l~~L~~L~L~~N~l~g~~--~~~~--~~~~~L~~l~ls~N~l~  200 (640)
                      .+++|++|+|++|+++|.+  +..+  ..+++|+.|+|++|+|+
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~  214 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME  214 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence            7777777777777766542  2222  55667777777777776

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.51  E-value=1.3e-13  Score=153.44  Aligned_cols=138  Identities=21%  Similarity=0.223  Sum_probs=93.2

Q ss_pred             CcEEEEEeCCCCCCCC-chhccCCCCCCEEeCCCCcCCCCCC---CCCCCCCCcEEEcccccccccCCc-cCCCCCCCCE
Q 006559           68 HRVIKLVLEDLDLTGP-AEVLSRLTQLRLLSLKNNLLSSSNL---NLSSWPHLKHLYLSHNRFTGTFPS-GVSSLRHLRR  142 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~-~~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~l~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~  142 (640)
                      ..+..|+|+++.+++. +..+..+++|+.|+|++|.+++.+.   .+..+++|++|+|++|.+++.+|. .+..+++|+.
T Consensus       353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~  432 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV  432 (562)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred             CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence            4567777777777763 3566777777777777777776432   467777777777777777775554 3667777777


Q ss_pred             EEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcc-cCCC
Q 006559          143 VDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAW-MSPF  210 (640)
Q Consensus       143 L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~-~~~~  210 (640)
                      |+|++|++++.+| ..+.  ++|+.|+|++|+++ .+|..+..+++|+.|+|++|+|+ .+|.. +..+
T Consensus       433 L~l~~n~l~~~~~-~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l  496 (562)
T 3a79_B          433 LNLSSNMLTGSVF-RCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRL  496 (562)
T ss_dssp             EECCSSCCCGGGG-SSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTC
T ss_pred             EECCCCCCCcchh-hhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcC
Confidence            7777777776555 2222  57777777777777 45555556777777777777777 45554 4433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.50  E-value=1.3e-13  Score=142.73  Aligned_cols=138  Identities=20%  Similarity=0.289  Sum_probs=94.5

Q ss_pred             CcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCC--C-CCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEE
Q 006559           68 HRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSS--S-NLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRV  143 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~--~-~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L  143 (640)
                      ..+..|++.++.+++.. ..+..+++|+.|+|++|.+..  . +..+..+++|++|++++|.++. +|..+.  ++|+.|
T Consensus       121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L  197 (330)
T 1xku_A          121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTEL  197 (330)
T ss_dssp             TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEE
T ss_pred             ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEE
Confidence            35778888888887654 457888888888888888863  2 2246677777777777777764 454443  667777


Q ss_pred             EcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCC
Q 006559          144 DLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPF  210 (640)
Q Consensus       144 ~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~  210 (640)
                      +|++|++++..| ..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|+|+ .+|.++..+
T Consensus       198 ~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l  262 (330)
T 1xku_A          198 HLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH  262 (330)
T ss_dssp             ECTTSCCCEECT-GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             ECCCCcCCccCH-HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence            777777765444 56677777777777777777666666666777777777777776 566655443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.50  E-value=3.2e-14  Score=140.06  Aligned_cols=139  Identities=17%  Similarity=0.206  Sum_probs=106.5

Q ss_pred             CcEEEEEeCCCC-CCCCc-hhccCCCCCCEEeCCC-CcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCC--
Q 006559           68 HRVIKLVLEDLD-LTGPA-EVLSRLTQLRLLSLKN-NLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLR--  141 (640)
Q Consensus        68 ~~v~~l~l~~~~-l~g~~-~~l~~l~~L~~L~Ls~-N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~--  141 (640)
                      .++..|+|+++. ++... ..+..+++|+.|+|++ |.+++.++ .+..+++|++|+|++|.+++ +|. |..+++|+  
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L  132 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF  132 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence            468888888886 76644 4688889999999988 88887665 57788889999999998886 666 88888888  


Q ss_pred             -EEEcccC-CCCCCCCchhcCCCCCCc-EEEccCCcceecccCCcCCCCCCcEEEcccCc-CcccCCcccCCC
Q 006559          142 -RVDLSHN-AYEGEIPMTELTRLPNLL-TLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQ-LSGQIPAWMSPF  210 (640)
Q Consensus       142 -~L~Ls~N-~l~g~~p~~~~~~l~~L~-~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~-l~g~ip~~~~~~  210 (640)
                       .|+|++| .+++ +|...|..+++|+ .|+|++|+++...+..+.. .+|+.|++++|+ +++..|..+..+
T Consensus       133 ~~L~l~~N~~l~~-i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l  203 (239)
T 2xwt_C          133 FILEITDNPYMTS-IPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGV  203 (239)
T ss_dssp             EEEEEESCTTCCE-ECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTC
T ss_pred             cEEECCCCcchhh-cCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhcc
Confidence             8999988 8874 5546688888888 8999888888433334443 788888888884 886555555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.50  E-value=1e-13  Score=155.51  Aligned_cols=110  Identities=20%  Similarity=0.176  Sum_probs=96.5

Q ss_pred             cEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcc
Q 006559           69 RVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS  146 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  146 (640)
                      ++..|+|+++.+++.. ..++.+++|+.|+|++|.+++.++ .++.+++|++|+|++|.|++..+..|+++++|++|+|+
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls  155 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  155 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence            6788999999998865 488999999999999999999877 47899999999999999997666667999999999999


Q ss_pred             cCCCCCCCCchhcCCCCCCcEEEccCCcceecc
Q 006559          147 HNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTL  179 (640)
Q Consensus       147 ~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~  179 (640)
                      +|.+++..| ..+..+++|++|+|++|.+++..
T Consensus       156 ~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~  187 (597)
T 3oja_B          156 NNNLERIED-DTFQATTSLQNLQLSSNRLTHVD  187 (597)
T ss_dssp             SSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCC
T ss_pred             CCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcC
Confidence            999997655 77899999999999999998753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.50  E-value=3.2e-15  Score=170.87  Aligned_cols=140  Identities=23%  Similarity=0.250  Sum_probs=121.2

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      ..+..|+|++|.+...+..+..+++|+.|+|++|.|+..+..+..|++|++|+|++|.|+ .+|..|++|++|+.|+|++
T Consensus       224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~  302 (727)
T 4b8c_D          224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFD  302 (727)
T ss_dssp             CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCS
T ss_pred             CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCC
Confidence            468889999999987777778999999999999999976668999999999999999999 7899999999999999999


Q ss_pred             CCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCC-CcEEEcccCcCcccCCcccCCC
Q 006559          148 NAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRS-ILDFNVSNNQLSGQIPAWMSPF  210 (640)
Q Consensus       148 N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~-L~~l~ls~N~l~g~ip~~~~~~  210 (640)
                      |.|+ .+| ..|+++++|+.|+|++|.|++.+|..+..+.. +..|+|++|.++|.+|..+..+
T Consensus       303 N~l~-~lp-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l  364 (727)
T 4b8c_D          303 NMVT-TLP-WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFI  364 (727)
T ss_dssp             SCCC-CCC-SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----
T ss_pred             CCCC-ccC-hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccccee
Confidence            9997 788 56999999999999999999999887654322 2347899999999999877644

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.49  E-value=1.2e-14  Score=167.84  Aligned_cols=141  Identities=21%  Similarity=0.270  Sum_probs=123.8

Q ss_pred             CcEEEEEeCCCCCCC------------------Cchhcc--CCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEccccc-
Q 006559           68 HRVIKLVLEDLDLTG------------------PAEVLS--RLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNR-  125 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g------------------~~~~l~--~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~-  125 (640)
                      .++..|+|++|.++|                  .++.++  ++++|+.|+|++|.+.+..| .+.++++|+.|+|++|+ 
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~  527 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG  527 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence            468899999999999                  566766  99999999999999988766 69999999999999998 


Q ss_pred             ccc-cCCccCCCCC-------CCCEEEcccCCCCCCCCc-hhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEccc
Q 006559          126 FTG-TFPSGVSSLR-------HLRRVDLSHNAYEGEIPM-TELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSN  196 (640)
Q Consensus       126 l~g-~~p~~~~~l~-------~L~~L~Ls~N~l~g~~p~-~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~  196 (640)
                      |+| .+|..+++++       +|+.|+|++|+++ .+|. ..+.++++|+.|+|++|+++ .+| .+..+++|+.|+|++
T Consensus       528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~  604 (876)
T 4ecn_A          528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDY  604 (876)
T ss_dssp             SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCS
T ss_pred             cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcC
Confidence            999 8887666554       9999999999999 8993 27999999999999999999 788 888899999999999


Q ss_pred             CcCcccCCcccCCCCC
Q 006559          197 NQLSGQIPAWMSPFGG  212 (640)
Q Consensus       197 N~l~g~ip~~~~~~~~  212 (640)
                      |+|+ .+|.++..+..
T Consensus       605 N~l~-~lp~~l~~l~~  619 (876)
T 4ecn_A          605 NQIE-EIPEDFCAFTD  619 (876)
T ss_dssp             SCCS-CCCTTSCEECT
T ss_pred             Cccc-cchHHHhhccc
Confidence            9999 89987765443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=2.1e-14  Score=134.41  Aligned_cols=128  Identities=19%  Similarity=0.144  Sum_probs=101.8

Q ss_pred             cEEEEEeCCCCCCCCchhccCCC-CCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLT-QLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .+..|+|+++.++... .+..+. +|+.|+|++|.|++. +.+..+++|++|+|++|.|++..|..+..+++|+.|+|++
T Consensus        20 ~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~   97 (176)
T 1a9n_A           20 RDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   97 (176)
T ss_dssp             SCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             CceEEEeeCCCCchhH-HhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence            6788889988888653 344444 899999999998876 6788889999999999999876555568889999999999


Q ss_pred             CCCCCCCCc-hhcCCCCCCcEEEccCCcceecccC----CcCCCCCCcEEEcccCcCc
Q 006559          148 NAYEGEIPM-TELTRLPNLLTLRLEDNRFTGTLYS----VNSSSRSILDFNVSNNQLS  200 (640)
Q Consensus       148 N~l~g~~p~-~~~~~l~~L~~L~L~~N~l~g~~~~----~~~~~~~L~~l~ls~N~l~  200 (640)
                      |+++ .+|. ..+..+++|+.|+|++|.++. +|.    .+..+++|+.||+++|.+.
T Consensus        98 N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           98 NSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9986 5662 367888999999999999874 444    3677888999999888765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.49  E-value=5.6e-14  Score=130.33  Aligned_cols=121  Identities=18%  Similarity=0.214  Sum_probs=103.2

Q ss_pred             cCCCCCCEEeCCCCcCC-C-CCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCC
Q 006559           88 SRLTQLRLLSLKNNLLS-S-SNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNL  165 (640)
Q Consensus        88 ~~l~~L~~L~Ls~N~l~-~-~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L  165 (640)
                      ...++|+.|+|++|.++ + .+..+..+++|++|+|++|.+++.  ..+..+++|+.|+|++|++++.+| ..+..+++|
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L   97 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD-MLAEKLPNL   97 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC-HHHHHCTTC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH-HHHhhCCCC
Confidence            34588999999999998 4 444678999999999999999976  789999999999999999998777 677789999


Q ss_pred             cEEEccCCcceecc-cCCcCCCCCCcEEEcccCcCcccCC---cccCCCC
Q 006559          166 LTLRLEDNRFTGTL-YSVNSSSRSILDFNVSNNQLSGQIP---AWMSPFG  211 (640)
Q Consensus       166 ~~L~L~~N~l~g~~-~~~~~~~~~L~~l~ls~N~l~g~ip---~~~~~~~  211 (640)
                      ++|+|++|++++.. +..+..+++|+.|++++|.+++..+   ..+..++
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~  147 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP  147 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc
Confidence            99999999999853 3678889999999999999997655   3454443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.49  E-value=6.4e-14  Score=156.08  Aligned_cols=136  Identities=20%  Similarity=0.250  Sum_probs=123.9

Q ss_pred             cEEEEEeCCCCCCCCc--hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEccccccc-ccCCccCCCCCCCCEEE
Q 006559           69 RVIKLVLEDLDLTGPA--EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFT-GTFPSGVSSLRHLRRVD  144 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~--~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~  144 (640)
                      .+..|++.++.+.+..  ..+..+++|+.|+|++|.+.+..+ .+..+++|++|+|++|.++ +.+|..+..+++|+.|+
T Consensus       397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~  476 (570)
T 2z63_A          397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  476 (570)
T ss_dssp             TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence            5778888888887654  478999999999999999988765 6889999999999999998 68999999999999999


Q ss_pred             cccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCc
Q 006559          145 LSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPA  205 (640)
Q Consensus       145 Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~  205 (640)
                      |++|++++..| ..+..+++|++|+|++|++++.++..+..+++|+.|++++|.++|.+|.
T Consensus       477 l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          477 LSQCQLEQLSP-TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCCccccCCh-hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            99999998667 7899999999999999999999888899999999999999999999884

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.49  E-value=2.9e-14  Score=155.60  Aligned_cols=148  Identities=20%  Similarity=0.233  Sum_probs=125.4

Q ss_pred             CCCceEecCCCCcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCC-CCCCCcEEEcccccccccCCcc
Q 006559           57 SWRGVTCNPSTHRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLS-SWPHLKHLYLSHNRFTGTFPSG  133 (640)
Q Consensus        57 ~w~gv~C~~~~~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~-~l~~L~~L~Ls~N~l~g~~p~~  133 (640)
                      .+.++.|..- ..+..|+|++|.+++.. ..++.+++|+.|+|++|.|++.++ .+. .+++|++|+|++|.|++..+  
T Consensus       110 ~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--  186 (487)
T 3oja_A          110 NISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--  186 (487)
T ss_dssp             CCCCEEECCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--
T ss_pred             cCCCCCcccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--
Confidence            5777777643 57899999999999875 578899999999999999998655 454 79999999999999998733  


Q ss_pred             CCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCc-ccCCcccCCC
Q 006559          134 VSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS-GQIPAWMSPF  210 (640)
Q Consensus       134 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~-g~ip~~~~~~  210 (640)
                      +..+++|+.|+|++|.+++ +| ..+..+++|+.|+|++|.|++ +|..+..+++|+.|++++|.+. +.+|.++..+
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~-~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l  261 (487)
T 3oja_A          187 QVVFAKLKTLDLSSNKLAF-MG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN  261 (487)
T ss_dssp             CCCCTTCCEEECCSSCCCE-EC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred             cccCCCCCEEECCCCCCCC-CC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence            4469999999999999996 55 348899999999999999997 6777888999999999999998 7777766543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=1.4e-13  Score=127.99  Aligned_cols=105  Identities=19%  Similarity=0.222  Sum_probs=88.7

Q ss_pred             EEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCC
Q 006559           73 LVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYE  151 (640)
Q Consensus        73 l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~  151 (640)
                      ++++++.++..+..+  .++|+.|+|++|.|++.++ .+..+++|++|+|++|+|++..|..|.++++|+.|+|++|+|+
T Consensus        14 l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~   91 (170)
T 3g39_A           14 VDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK   91 (170)
T ss_dssp             EECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC
Confidence            344455666655434  3889999999999999866 6899999999999999999877778899999999999999999


Q ss_pred             CCCCchhcCCCCCCcEEEccCCcceeccc
Q 006559          152 GEIPMTELTRLPNLLTLRLEDNRFTGTLY  180 (640)
Q Consensus       152 g~~p~~~~~~l~~L~~L~L~~N~l~g~~~  180 (640)
                      + +|...|..+++|++|+|++|.++...+
T Consensus        92 ~-~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           92 S-IPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             C-CCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             E-eCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            6 554679999999999999999987543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.48  E-value=2.3e-13  Score=152.90  Aligned_cols=144  Identities=19%  Similarity=0.161  Sum_probs=130.7

Q ss_pred             cEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           69 RVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .+..|++.++.+++.. ..+..+++|+.|+|++|.++..+..+..+++|++|+|++|.+++..|..+.++++|+.|+|++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  334 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG  334 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence            6899999999998866 558999999999999999998877899999999999999999998898999999999999999


Q ss_pred             CCCCCCCCchhcCCCCCCcEEEccCCcceecc--cCCcCCCCCCcEEEcccCcCcccCCcccCCCCC
Q 006559          148 NAYEGEIPMTELTRLPNLLTLRLEDNRFTGTL--YSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGG  212 (640)
Q Consensus       148 N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~--~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~~  212 (640)
                      |.+.+.+|...+..+++|++|+|++|.+++..  +..+..+++|+.|++++|++++..|..+..++.
T Consensus       335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  401 (606)
T 3t6q_A          335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ  401 (606)
T ss_dssp             CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred             CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence            99999998777999999999999999999876  778888999999999999999988887765543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.48  E-value=7.7e-14  Score=153.74  Aligned_cols=136  Identities=18%  Similarity=0.302  Sum_probs=87.2

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCC-CCCCCCCCCcEEEcccccccc--cCCccCCCCCCCCEEEc
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSN-LNLSSWPHLKHLYLSHNRFTG--TFPSGVSSLRHLRRVDL  145 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~L  145 (640)
                      .+..|+++++.+.... ....+++|+.|+|++|.+++.. ..+..+++|++|+|++|++++  .+|..+.++++|+.|+|
T Consensus       303 ~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L  381 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI  381 (520)
T ss_dssp             CCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred             ceeEEEcCCCcccccc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence            3666666666655432 1256667777777777776633 356667777777777777765  45566667777777777


Q ss_pred             ccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccC
Q 006559          146 SHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMS  208 (640)
Q Consensus       146 s~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~  208 (640)
                      ++|.+++.+|...+..+++|+.|+|++|++++.+|..+.  ++|+.|++++|+|+ .+|.++.
T Consensus       382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~  441 (520)
T 2z7x_B          382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV  441 (520)
T ss_dssp             CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG
T ss_pred             CCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh
Confidence            777776656644466667777777777777666665542  56667777777766 5665543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.47  E-value=5.8e-13  Score=124.58  Aligned_cols=127  Identities=17%  Similarity=0.187  Sum_probs=104.6

Q ss_pred             CCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccC
Q 006559           93 LRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLED  172 (640)
Q Consensus        93 L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~  172 (640)
                      .+.+++++|.++..+..+  .++|+.|+|++|++++..+..|.++++|++|+|++|++++ +|...+..+++|++|+|++
T Consensus         9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE-eChhHccCCCccCEEECCC
Confidence            578999999998876544  3789999999999998777788999999999999999995 5547789999999999999


Q ss_pred             CcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCC---CCCCCCCcccC
Q 006559          173 NRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFG---GSSFAGNKNLC  222 (640)
Q Consensus       173 N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~---~~~~~gn~~lc  222 (640)
                      |+|++..+..+..+++|+.|++++|+|++..+..+..+.   ...+.+|+..|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            999988888888899999999999999966555444443   33445565433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.47  E-value=3.8e-13  Score=134.48  Aligned_cols=124  Identities=20%  Similarity=0.261  Sum_probs=87.0

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccC
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN  148 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  148 (640)
                      ++..|+++++.++... .+..+++|+.|+|++|.+++.++ +..+++|++|+|++|++++ +|... . ++|+.|+|++|
T Consensus        42 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N  116 (263)
T 1xeu_A           42 GVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNN  116 (263)
T ss_dssp             TCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSS
T ss_pred             cCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEccCC
Confidence            5666777777776543 56777777777777777777655 7777777777777777775 33322 2 77777777777


Q ss_pred             CCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCccc
Q 006559          149 AYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQ  202 (640)
Q Consensus       149 ~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~  202 (640)
                      ++++ +|  .+..+++|+.|+|++|++++. + .+..+++|+.|+|++|+|++.
T Consensus       117 ~l~~-~~--~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          117 ELRD-TD--SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CCSB-SG--GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred             ccCC-Ch--hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence            7775 33  467777777777777777764 2 456677777777777777765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.47  E-value=2.2e-13  Score=138.35  Aligned_cols=124  Identities=31%  Similarity=0.379  Sum_probs=87.4

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccC
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN  148 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  148 (640)
                      ++..|+|+++.+++..+ +..+++|+.|+|++|.+++. +.+..+++|++|+|++|.+++.  +.+..+++|+.|+|++|
T Consensus        69 ~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n  144 (291)
T 1h6t_A           69 NVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNN  144 (291)
T ss_dssp             TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCG-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSS
T ss_pred             CCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCC-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCC
Confidence            56777777777776555 77777777777777777664 3467777777777777777653  45667777777777777


Q ss_pred             CCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcc
Q 006559          149 AYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSG  201 (640)
Q Consensus       149 ~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g  201 (640)
                      ++++.   ..+..+++|+.|+|++|++++..+  +..+++|+.|++++|+|++
T Consensus       145 ~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          145 KITDI---TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             CCCCC---GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             cCCcc---hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            77753   346677777777777777776554  6667777777777777765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.46  E-value=3.9e-13  Score=142.47  Aligned_cols=110  Identities=20%  Similarity=0.190  Sum_probs=92.7

Q ss_pred             CcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEc
Q 006559           68 HRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDL  145 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  145 (640)
                      .++..|+|+++.+++.. ..+..+++|+.|+|++|.+++.++ .+..+++|++|+|++|.++...+..|.++++|++|+|
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  148 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  148 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence            36778899999888754 578999999999999999998876 4789999999999999998554555789999999999


Q ss_pred             ccCCCCCCCCchhcCCCCCCcEEEccCCcceec
Q 006559          146 SHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGT  178 (640)
Q Consensus       146 s~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~  178 (640)
                      ++|.+++..| ..+..+++|++|+|++|++++.
T Consensus       149 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          149 SNNNLERIED-DTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBC
T ss_pred             CCCccCccCh-hhccCCCCCCEEECCCCcCCcc
Confidence            9999986544 6788899999999999998864

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.46  E-value=2e-14  Score=147.40  Aligned_cols=142  Identities=21%  Similarity=0.228  Sum_probs=111.0

Q ss_pred             cEEEEEeCCCCCCCCc-hhc--cCCCCCCEEeCCCCcCCCCCC-----CCCCCCCCcEEEcccccccccCCccCCCCCCC
Q 006559           69 RVIKLVLEDLDLTGPA-EVL--SRLTQLRLLSLKNNLLSSSNL-----NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHL  140 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~-~~l--~~l~~L~~L~Ls~N~l~~~~~-----~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L  140 (640)
                      ++..|+|.++.+++.. ..+  ..+++|+.|+|++|.+++..+     .+..+++|++|+|++|.+++..|..|+++++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            3788888888888754 334  889999999999999987543     24578899999999999988888889999999


Q ss_pred             CEEEcccCCCCCC--CC-chhcCCCCCCcEEEccCCcceeccc--C-CcCCCCCCcEEEcccCcCcccCCcccCCC
Q 006559          141 RRVDLSHNAYEGE--IP-MTELTRLPNLLTLRLEDNRFTGTLY--S-VNSSSRSILDFNVSNNQLSGQIPAWMSPF  210 (640)
Q Consensus       141 ~~L~Ls~N~l~g~--~p-~~~~~~l~~L~~L~L~~N~l~g~~~--~-~~~~~~~L~~l~ls~N~l~g~ip~~~~~~  210 (640)
                      ++|||++|++.+.  ++ ...+..+++|++|+|++|+++...+  . .+..+++|+.|+|++|+|++.+|..+..+
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  247 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC  247 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence            9999999998753  22 1234678899999999999973221  1 24567899999999999999888766544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.46  E-value=1.3e-13  Score=152.94  Aligned_cols=109  Identities=28%  Similarity=0.391  Sum_probs=100.4

Q ss_pred             CCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEcc
Q 006559           92 QLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLE  171 (640)
Q Consensus        92 ~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~  171 (640)
                      .|+.|+|++|.|++.+ .++.+++|+.|+|++|.|+ .+|..|+++++|+.|+|++|+|++ +|  .++.+++|+.|+|+
T Consensus       442 ~L~~L~Ls~n~l~~lp-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCCCc-CccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc--ccCCCCCCcEEECC
Confidence            5889999999999865 4999999999999999999 889999999999999999999997 66  68999999999999


Q ss_pred             CCcceecc-cCCcCCCCCCcEEEcccCcCcccCCc
Q 006559          172 DNRFTGTL-YSVNSSSRSILDFNVSNNQLSGQIPA  205 (640)
Q Consensus       172 ~N~l~g~~-~~~~~~~~~L~~l~ls~N~l~g~ip~  205 (640)
                      +|+|++.+ |..+..+++|+.|+|++|+|++.+|.
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            99999987 88999999999999999999987663

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.45  E-value=3.3e-13  Score=138.21  Aligned_cols=128  Identities=23%  Similarity=0.320  Sum_probs=106.0

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .++..|+|+++.+++... +..+++|+.|+|++|.+++. +.+..+++|++|+|++|.+++. |. +..+++|+.|+|++
T Consensus        63 ~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~  138 (308)
T 1h6u_A           63 NNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDL  138 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC-GGGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCS
T ss_pred             CCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc-hhhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCC
Confidence            468889999998888766 88999999999999998875 4688889999999999999863 43 88899999999999


Q ss_pred             CCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCC
Q 006559          148 NAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP  204 (640)
Q Consensus       148 N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip  204 (640)
                      |.+++ ++  .+..+++|+.|+|++|++++..+  +..+++|+.|++++|++++..|
T Consensus       139 n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          139 NQITN-IS--PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP  190 (308)
T ss_dssp             SCCCC-CG--GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred             CccCc-Cc--cccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh
Confidence            99985 44  27888899999999999987554  7778899999999999886544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.45  E-value=3.8e-13  Score=136.59  Aligned_cols=128  Identities=25%  Similarity=0.421  Sum_probs=113.1

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .++..|+++++.+... +.+..+++|+.|+|++|.+++.++ +..+++|++|+|++|.+++ + +.+..+++|+.|+|++
T Consensus        46 ~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEH  121 (291)
T ss_dssp             HTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTT
T ss_pred             CcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCC
Confidence            3588899999988765 458899999999999999999776 9999999999999999987 3 3489999999999999


Q ss_pred             CCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCC
Q 006559          148 NAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP  204 (640)
Q Consensus       148 N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip  204 (640)
                      |++++ ++  .+..+++|+.|+|++|++++.  ..+..+++|+.|++++|++++..|
T Consensus       122 n~i~~-~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          122 NGISD-IN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             SCCCC-CG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             CcCCC-Ch--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence            99986 43  588999999999999999985  567789999999999999998655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.45  E-value=1.4e-13  Score=152.68  Aligned_cols=122  Identities=25%  Similarity=0.228  Sum_probs=108.4

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccC
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN  148 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  148 (640)
                      .+..|+|++|.+++.+. ++.+++|+.|+|++|.|+..|..++.+++|+.|+|++|.|++ +| .++++++|+.|+|++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC
Confidence            36679999999999765 999999999999999999777789999999999999999997 67 8999999999999999


Q ss_pred             CCCCCC-CchhcCCCCCCcEEEccCCcceecccCC---cCCCCCCcEEEc
Q 006559          149 AYEGEI-PMTELTRLPNLLTLRLEDNRFTGTLYSV---NSSSRSILDFNV  194 (640)
Q Consensus       149 ~l~g~~-p~~~~~~l~~L~~L~L~~N~l~g~~~~~---~~~~~~L~~l~l  194 (640)
                      +|++.+ | ..+..+++|+.|+|++|+|++.+|..   ...+++|+.|++
T Consensus       519 ~l~~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          519 RLQQSAAI-QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCCSSSTT-GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCc-HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999876 7 78999999999999999999887643   234788888865

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.44  E-value=4.9e-13  Score=133.62  Aligned_cols=125  Identities=23%  Similarity=0.304  Sum_probs=111.2

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .++..|+|++|.+++..+ +..+++|+.|+|++|.+++.+. +.. ++|++|+|++|++++.  +.+..+++|+.|+|++
T Consensus        63 ~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~  137 (263)
T 1xeu_A           63 TNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRN  137 (263)
T ss_dssp             TTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTT
T ss_pred             CCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCC
Confidence            478999999999998776 9999999999999999998654 333 9999999999999974  3689999999999999


Q ss_pred             CCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCccc
Q 006559          148 NAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQ  202 (640)
Q Consensus       148 N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~  202 (640)
                      |++++ +|  .+..+++|+.|+|++|++++.  ..+..+++|+.|++++|.+++.
T Consensus       138 N~i~~-~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          138 NKLKS-IV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             SCCCB-CG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CcCCC-Ch--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            99996 44  588999999999999999987  6678899999999999999866

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.44  E-value=3.9e-13  Score=144.93  Aligned_cols=153  Identities=20%  Similarity=0.251  Sum_probs=129.1

Q ss_pred             CcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCc-CCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEE
Q 006559           68 HRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNL-LSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVD  144 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~-l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  144 (640)
                      .++..|+|++|.++... ..+..+++|+.|+|++|. +...++ .+..+++|++|+|++|+++ .+| .+..+++|+.|+
T Consensus       136 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~  213 (440)
T 3zyj_A          136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELD  213 (440)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEE
T ss_pred             ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEE
Confidence            46889999999998754 578999999999999854 444444 5889999999999999998 455 488999999999


Q ss_pred             cccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCC---CCCCCCCccc
Q 006559          145 LSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFG---GSSFAGNKNL  221 (640)
Q Consensus       145 Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~---~~~~~gn~~l  221 (640)
                      |++|++++..| ..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|+|++..+..+..+.   ...+.+|+..
T Consensus       214 Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          214 LSGNHLSAIRP-GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCCccCccCh-hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            99999997656 7899999999999999999999999999999999999999999977776665443   4456788777


Q ss_pred             CC
Q 006559          222 CG  223 (640)
Q Consensus       222 cg  223 (640)
                      |.
T Consensus       293 Cd  294 (440)
T 3zyj_A          293 CN  294 (440)
T ss_dssp             CS
T ss_pred             CC
Confidence            64

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.44  E-value=3.5e-13  Score=145.79  Aligned_cols=153  Identities=18%  Similarity=0.227  Sum_probs=128.8

Q ss_pred             CcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCC-cCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEE
Q 006559           68 HRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNN-LLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVD  144 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N-~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  144 (640)
                      .++..|+|++|.++... ..+..+++|+.|+|++| .+...++ .+..+++|++|+|++|++++. | .+..+++|+.|+
T Consensus       147 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~  224 (452)
T 3zyi_A          147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELE  224 (452)
T ss_dssp             TTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEE
T ss_pred             CCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEE
Confidence            46889999999998754 57899999999999984 5554444 588999999999999999864 4 588999999999


Q ss_pred             cccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCC---CCCCCCCccc
Q 006559          145 LSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFG---GSSFAGNKNL  221 (640)
Q Consensus       145 Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~---~~~~~gn~~l  221 (640)
                      |++|.+++..| ..|.++++|+.|+|++|++++..+..+..+++|+.|+|++|+|++..+..+..+.   ...+.+|+..
T Consensus       225 Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          225 MSGNHFPEIRP-GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CTTSCCSEECG-GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CcCCcCcccCc-ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            99999997555 7899999999999999999999999999999999999999999977776665444   3456778766


Q ss_pred             CC
Q 006559          222 CG  223 (640)
Q Consensus       222 cg  223 (640)
                      |.
T Consensus       304 Cd  305 (452)
T 3zyi_A          304 CD  305 (452)
T ss_dssp             CS
T ss_pred             CC
Confidence            64

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.44  E-value=3.6e-13  Score=137.90  Aligned_cols=125  Identities=22%  Similarity=0.266  Sum_probs=77.1

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccC
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN  148 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  148 (640)
                      ++..|++.++.++... .+..+++|+.|+|++|.+.+.++ +..+++|++|+|++|.+++.  +.+..+++|+.|+|++|
T Consensus        42 ~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n  117 (308)
T 1h6u_A           42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST  117 (308)
T ss_dssp             TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTS
T ss_pred             CcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCC
Confidence            4556666666655432 45666666666666666666554 66666666666666666642  24666666666666666


Q ss_pred             CCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCccc
Q 006559          149 AYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQ  202 (640)
Q Consensus       149 ~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~  202 (640)
                      ++++ +|  .+..+++|++|+|++|++++..+  +..+++|+.|++++|++++.
T Consensus       118 ~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~  166 (308)
T 1h6u_A          118 QITD-VT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL  166 (308)
T ss_dssp             CCCC-CG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             CCCC-ch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC
Confidence            6664 33  25666666666666666665443  55566666666666666653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.44  E-value=9.4e-14  Score=153.02  Aligned_cols=137  Identities=18%  Similarity=0.239  Sum_probs=114.4

Q ss_pred             CcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEc
Q 006559           68 HRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDL  145 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  145 (640)
                      .+++.|+|+++.+++.. ..+..+++|++|+|++|.+++..+ .+..+++|++|+|++|+++ .+|..  .+++|++|+|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            47888999999998866 678999999999999999988754 6889999999999999998 46665  7899999999


Q ss_pred             ccCCCCC-CCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCC--cEEEcccCcC--cccCCcccCCCC
Q 006559          146 SHNAYEG-EIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSI--LDFNVSNNQL--SGQIPAWMSPFG  211 (640)
Q Consensus       146 s~N~l~g-~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L--~~l~ls~N~l--~g~ip~~~~~~~  211 (640)
                      ++|.+++ .+| ..++++++|++|+|++|++++.   .+..+++|  +.|++++|++  ++.+|..+..+.
T Consensus        98 ~~N~l~~~~~p-~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~  164 (520)
T 2z7x_B           98 SFNAFDALPIC-KEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN  164 (520)
T ss_dssp             CSSCCSSCCCC-GGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred             cCCccccccch-hhhccCCcceEEEecCcccchh---hccccccceeeEEEeecccccccccccccccccc
Confidence            9999987 466 6788999999999999999873   34456667  9999999999  888888776654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.44  E-value=6.4e-13  Score=148.24  Aligned_cols=126  Identities=30%  Similarity=0.370  Sum_probs=109.8

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .++..|+|+++.+++..+ +..+++|+.|+|++|.|++. +.+..+++|+.|+|++|.|++.  +.+..|++|+.|+|++
T Consensus        65 ~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~  140 (605)
T 1m9s_A           65 PNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGN  140 (605)
T ss_dssp             TTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCS
T ss_pred             CCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCC-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCC
Confidence            468899999999988766 88999999999999999875 4788999999999999999863  4688999999999999


Q ss_pred             CCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCccc
Q 006559          148 NAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQ  202 (640)
Q Consensus       148 N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~  202 (640)
                      |.+++.   ..+..+++|+.|+|++|+|++..|  +..+++|+.|+|++|+|++.
T Consensus       141 N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          141 NKITDI---TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL  190 (605)
T ss_dssp             SCCCCC---GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             CccCCc---hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence            999864   468899999999999999998777  77899999999999999874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.43  E-value=3.2e-13  Score=139.86  Aligned_cols=138  Identities=18%  Similarity=0.221  Sum_probs=87.5

Q ss_pred             CcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCC--CCC-CCCCC--------------------CCCcEEEccc
Q 006559           68 HRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSS--SNL-NLSSW--------------------PHLKHLYLSH  123 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~--~~~-~~~~l--------------------~~L~~L~Ls~  123 (640)
                      ..+..|+++++.+++.. ..+..+++|+.|+|++|.++.  ..+ .+..+                    ++|++|+|++
T Consensus       123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~  202 (332)
T 2ft3_A          123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDH  202 (332)
T ss_dssp             TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCS
T ss_pred             ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCC
Confidence            36888999999988765 458889999999999998853  222 33333                    3455555555


Q ss_pred             ccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccC
Q 006559          124 NRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQI  203 (640)
Q Consensus       124 N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~i  203 (640)
                      |.+++..|..+.++++|+.|+|++|++++..| ..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+|++..
T Consensus       203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~  280 (332)
T 2ft3_A          203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG  280 (332)
T ss_dssp             SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccC
Confidence            55555555556666666666666666664333 45566666666666666666 45555555666666666666666544


Q ss_pred             Cccc
Q 006559          204 PAWM  207 (640)
Q Consensus       204 p~~~  207 (640)
                      +..+
T Consensus       281 ~~~~  284 (332)
T 2ft3_A          281 VNDF  284 (332)
T ss_dssp             TTSS
T ss_pred             hhHc
Confidence            4433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.43  E-value=3.5e-13  Score=150.06  Aligned_cols=133  Identities=23%  Similarity=0.250  Sum_probs=63.9

Q ss_pred             cEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcc
Q 006559           69 RVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS  146 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  146 (640)
                      +++.|+|++|.+++.. ..+..+++|++|+|++|.+++..+ .+..+++|++|+|++|+|+ .+|..  .+++|++|+|+
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS  129 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred             CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence            4445555555555443 345555555555555555554433 3455555555555555554 33433  45555555555


Q ss_pred             cCCCCC-CCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCC--cEEEcccCcC--cccCCcccC
Q 006559          147 HNAYEG-EIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSI--LDFNVSNNQL--SGQIPAWMS  208 (640)
Q Consensus       147 ~N~l~g-~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L--~~l~ls~N~l--~g~ip~~~~  208 (640)
                      +|++++ .+| ..+.++++|++|+|++|++++..   +..+.+|  +.|++++|++  ++..|..+.
T Consensus       130 ~N~l~~l~~p-~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~  192 (562)
T 3a79_B          130 FNDFDVLPVC-KEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQ  192 (562)
T ss_dssp             SSCCSBCCCC-GGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEE
T ss_pred             CCCccccCch-HhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccccccccCccccc
Confidence            555543 122 34555555555555555554321   2222233  5555555555  454454443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.43  E-value=9e-13  Score=137.66  Aligned_cols=146  Identities=20%  Similarity=0.182  Sum_probs=121.3

Q ss_pred             CCceEecCCCCcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCC
Q 006559           58 WRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSS  136 (640)
Q Consensus        58 w~gv~C~~~~~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~  136 (640)
                      -....|...  .+  .++++++++..+..+.  ++|+.|+|++|.+++.++ .+..+++|++|+|++|.+++..|..|.+
T Consensus        25 ~~~~~C~~~--~~--c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (353)
T 2z80_A           25 QASLSCDRN--GI--CKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS   98 (353)
T ss_dssp             --CCEECTT--SE--EECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             ccCCCCCCC--eE--eeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC
Confidence            357788653  33  7888888887665443  589999999999998776 6999999999999999999988999999


Q ss_pred             CCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceeccc-CCcCCCCCCcEEEcccCc-CcccCCcccCCC
Q 006559          137 LRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLY-SVNSSSRSILDFNVSNNQ-LSGQIPAWMSPF  210 (640)
Q Consensus       137 l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~-~~~~~~~~L~~l~ls~N~-l~g~ip~~~~~~  210 (640)
                      +++|++|+|++|++++ +|...+.++++|++|+|++|++++..+ ..+..+++|+.|++++|+ +++..|..+..+
T Consensus        99 l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l  173 (353)
T 2z80_A           99 LGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL  173 (353)
T ss_dssp             CTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred             CCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC
Confidence            9999999999999995 675668999999999999999996554 478889999999999995 665555555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.42  E-value=8e-13  Score=146.51  Aligned_cols=142  Identities=20%  Similarity=0.213  Sum_probs=120.9

Q ss_pred             EecCCCCcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCC
Q 006559           62 TCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHL  140 (640)
Q Consensus        62 ~C~~~~~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L  140 (640)
                      .|...  .+  .++.+++++..+..+.  ++|+.|+|++|.+++.++ .+..+++|++|+|++|++++..|..|+++++|
T Consensus         3 ~C~~~--~~--c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   76 (549)
T 2z81_A            3 SCDAS--GV--CDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL   76 (549)
T ss_dssp             EECTT--SE--EECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             cCCCC--ce--EECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccC
Confidence            57542  34  6888888887665443  799999999999998765 79999999999999999999999999999999


Q ss_pred             CEEEcccCCCCCCCCchhcCCCCCCcEEEccCCccee-cccCCcCCCCCCcEEEcccCcCcccCC-cccCCC
Q 006559          141 RRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTG-TLYSVNSSSRSILDFNVSNNQLSGQIP-AWMSPF  210 (640)
Q Consensus       141 ~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g-~~~~~~~~~~~L~~l~ls~N~l~g~ip-~~~~~~  210 (640)
                      ++|||++|.+++. |+..++++++|++|+|++|++++ .+|..+..+++|+.|++++|++.+.+| ..+..+
T Consensus        77 ~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l  147 (549)
T 2z81_A           77 EHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL  147 (549)
T ss_dssp             CEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred             CEEECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence            9999999999964 43779999999999999999997 467788999999999999999777776 455544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.42  E-value=5.8e-13  Score=138.65  Aligned_cols=131  Identities=20%  Similarity=0.288  Sum_probs=77.8

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccC
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN  148 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  148 (640)
                      .+..|+++++.+.+... +..+++|+.|++++|.+.+..+ +..+++|++|+|++|.+++..+  +..+++|+.|+|++|
T Consensus       178 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n  253 (347)
T 4fmz_A          178 DLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN  253 (347)
T ss_dssp             TCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCC
Confidence            56777777777766443 5666666666666666665443 5556666666666666654332  556666666666666


Q ss_pred             CCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccC
Q 006559          149 AYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMS  208 (640)
Q Consensus       149 ~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~  208 (640)
                      .+++ +  ..+..+++|+.|++++|++++.  +.+..+++|+.|++++|++++..|..+.
T Consensus       254 ~l~~-~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~  308 (347)
T 4fmz_A          254 QISD-I--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG  308 (347)
T ss_dssp             CCCC-C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred             ccCC-C--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh
Confidence            6654 2  2355566666666666666553  2344556666666666666655554443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.42  E-value=1.9e-13  Score=140.70  Aligned_cols=114  Identities=18%  Similarity=0.090  Sum_probs=68.6

Q ss_pred             CCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccC-CCCCCCCEEEcccCCCCCCCCchhcCCCCCCcE
Q 006559           90 LTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGV-SSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLT  167 (640)
Q Consensus        90 l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~-~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~  167 (640)
                      +++|+.|+|++|.+++.++ .+..+++|++|+|++|.+++..|..+ ..+++|+.|+|++|.+++. |  ....+++|++
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~l~~L~~  195 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K--GQVVFAKLKT  195 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E--CCCCCTTCCE
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c--cccccccCCE
Confidence            5566666666666666544 45666666666666666666555554 3566666666666666642 3  1234666666


Q ss_pred             EEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccC
Q 006559          168 LRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMS  208 (640)
Q Consensus       168 L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~  208 (640)
                      |+|++|++++..+. +..+++|+.|+|++|+|+ .+|..+.
T Consensus       196 L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~  234 (317)
T 3o53_A          196 LDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALR  234 (317)
T ss_dssp             EECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred             EECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhh
Confidence            66666666654333 555666666777766666 3454443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.40  E-value=1.9e-13  Score=140.67  Aligned_cols=138  Identities=20%  Similarity=0.241  Sum_probs=116.2

Q ss_pred             CcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CC-CCCCCCcEEEcccccccccCCccCCCCCCCCEEE
Q 006559           68 HRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NL-SSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVD  144 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~-~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  144 (640)
                      ..+..|+|++|.+++.. ..+..+++|+.|+|++|.+++.++ .+ ..+++|++|+|++|.+++. | ....+++|+.|+
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~  197 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLD  197 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEE
Confidence            35777888888888764 467889999999999999998654 34 4789999999999999876 3 334599999999


Q ss_pred             cccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCc-ccCCcccCCC
Q 006559          145 LSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS-GQIPAWMSPF  210 (640)
Q Consensus       145 Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~-g~ip~~~~~~  210 (640)
                      |++|++++ +| ..+..+++|+.|+|++|++++ +|..+..+++|+.|++++|.++ +.+|.++..+
T Consensus       198 Ls~N~l~~-l~-~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~  261 (317)
T 3o53_A          198 LSSNKLAF-MG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN  261 (317)
T ss_dssp             CCSSCCCE-EC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred             CCCCcCCc-ch-hhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence            99999995 66 458899999999999999995 6777888999999999999999 7777776554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.39  E-value=9.3e-13  Score=146.93  Aligned_cols=128  Identities=23%  Similarity=0.320  Sum_probs=114.1

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .++..|+|+++.+++.. .+..+++|+.|+|++|.|.+. +.+..+++|+.|+|++|.|++.  ..+..+++|+.|+|++
T Consensus        87 ~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~  162 (605)
T 1m9s_A           87 KNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED  162 (605)
T ss_dssp             TTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCS
T ss_pred             CCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcC
Confidence            46889999999999864 789999999999999999985 5688999999999999999975  6789999999999999


Q ss_pred             CCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCC
Q 006559          148 NAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP  204 (640)
Q Consensus       148 N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip  204 (640)
                      |.+++..|   +..+++|+.|+|++|+|++.  +.+..+++|+.|+|++|++++...
T Consensus       163 N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          163 NQISDIVP---LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             SCCCCCGG---GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred             CcCCCchh---hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence            99997544   88999999999999999985  357789999999999999987533

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.39  E-value=9.1e-13  Score=143.13  Aligned_cols=128  Identities=27%  Similarity=0.333  Sum_probs=111.6

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .++..|+++++.+++..+ +..+++|+.|+|++|.+++.++ +..+++|+.|+|++|++++..|  +..+++|+.|+|++
T Consensus       243 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~  318 (466)
T 1o6v_A          243 TNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF  318 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCS
T ss_pred             CCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcC
Confidence            468889999999988765 8899999999999999998765 8889999999999999987544  78899999999999


Q ss_pred             CCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCC
Q 006559          148 NAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP  204 (640)
Q Consensus       148 N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip  204 (640)
                      |++++..|   +..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++.+|
T Consensus       319 n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          319 NNISDISP---VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             SCCSCCGG---GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             CcCCCchh---hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence            99997544   67889999999999999985  467778999999999999998887

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=2.1e-12  Score=120.49  Aligned_cols=106  Identities=21%  Similarity=0.301  Sum_probs=91.2

Q ss_pred             EEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCC
Q 006559           71 IKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNA  149 (640)
Q Consensus        71 ~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~  149 (640)
                      ..++++++.++..+..+.  ++|+.|+|++|.|++.++ .+..+++|++|+|++|+|++..+..|.++++|+.|+|++|+
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            356778888876555443  899999999999999866 68999999999999999998766678999999999999999


Q ss_pred             CCCCCCchhcCCCCCCcEEEccCCcceecc
Q 006559          150 YEGEIPMTELTRLPNLLTLRLEDNRFTGTL  179 (640)
Q Consensus       150 l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~  179 (640)
                      |++ +|...|..+++|++|+|++|.|....
T Consensus        93 l~~-l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           93 LKS-IPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCC-CCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             cce-eCHHHhccccCCCEEEeCCCCccccc
Confidence            995 66466999999999999999998654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.38  E-value=1.2e-12  Score=136.30  Aligned_cols=111  Identities=23%  Similarity=0.314  Sum_probs=85.6

Q ss_pred             CC-CCCCCceEecCCCCcEEEEEeCCCCCCCCchhccCCCCCCEEeCCC-CcCCCCCC-CCCCCCCCcEEEccccccccc
Q 006559           53 PC-FDSWRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKN-NLLSSSNL-NLSSWPHLKHLYLSHNRFTGT  129 (640)
Q Consensus        53 ~c-~~~w~gv~C~~~~~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~-N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~  129 (640)
                      .| .|.|..|.|...           ++|+..+. +..+++|+.|+|++ |.|++.++ .|..+++|+.|+|++|+|++.
T Consensus         4 ~c~~C~~~~v~~~~~-----------n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~   71 (347)
T 2ifg_A            4 ACCPHGSSGLRCTRD-----------GALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV   71 (347)
T ss_dssp             SSCCSSSSCEECCSS-----------CCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE
T ss_pred             cCccccCCEEEcCCC-----------CCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee
Confidence            35 458888888642           25666556 88888888888886 88888765 588888888888888888888


Q ss_pred             CCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCccee
Q 006559          130 FPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTG  177 (640)
Q Consensus       130 ~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g  177 (640)
                      .|..|.+|++|+.|||++|+|++ +|...+..++ |+.|+|.+|.|..
T Consensus        72 ~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           72 APDAFHFTPRLSRLNLSFNALES-LSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CTTGGGSCSCCCEEECCSSCCSC-CCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CHHHhcCCcCCCEEeCCCCccce-eCHHHcccCC-ceEEEeeCCCccC
Confidence            88888888888888888888884 5545555555 8888888888774

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.38  E-value=1.4e-12  Score=141.67  Aligned_cols=126  Identities=29%  Similarity=0.310  Sum_probs=112.4

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .++..|++.++.+++. +.+..+++|+.|+|++|.+++.++ +..+++|+.|+|++|.+++..|  +..+++|+.|+|++
T Consensus       221 ~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~  296 (466)
T 1o6v_A          221 TNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNE  296 (466)
T ss_dssp             TTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred             CCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCC
Confidence            4688999999998875 568899999999999999998765 8899999999999999997544  88999999999999


Q ss_pred             CCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCccc
Q 006559          148 NAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQ  202 (640)
Q Consensus       148 N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~  202 (640)
                      |++++..|   +..+++|+.|+|++|++++..|  +..+++|+.|++++|++++.
T Consensus       297 n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          297 NQLEDISP---ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             SCCSCCGG---GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             CcccCchh---hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence            99997433   7889999999999999999876  66799999999999999986

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.38  E-value=8.7e-13  Score=137.29  Aligned_cols=144  Identities=20%  Similarity=0.289  Sum_probs=122.1

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      ..+..+++.++.+.+... +..+++|+.|+|++|.+++.++ +..+++|++|+|++|.+++.  +.+..+++|+.|+|++
T Consensus       199 ~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~  274 (347)
T 4fmz_A          199 TSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGS  274 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCS
T ss_pred             CccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccC
Confidence            467889999998887655 8899999999999999998766 88999999999999999874  5689999999999999


Q ss_pred             CCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCC-cccCCCCCCCCCCC
Q 006559          148 NAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP-AWMSPFGGSSFAGN  218 (640)
Q Consensus       148 N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip-~~~~~~~~~~~~gn  218 (640)
                      |++++ +|  .+..+++|+.|+|++|++++..+..+..+++|+.|++++|++++..| ..+..+....+.+|
T Consensus       275 n~l~~-~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          275 NQISD-IS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQ  343 (347)
T ss_dssp             SCCCC-CG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC
T ss_pred             CccCC-Ch--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhh
Confidence            99986 44  57889999999999999999998888899999999999999998877 22333333444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.37  E-value=7.8e-13  Score=146.02  Aligned_cols=124  Identities=21%  Similarity=0.225  Sum_probs=92.1

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .++..|+|++|.+++.+. +..  +|+.|+|++|.|++.+.   .+++|+.|+|++|.|++ +|.   .+++|+.|+|++
T Consensus       100 ~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~  169 (571)
T 3cvr_A          100 ASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRN  169 (571)
T ss_dssp             TTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred             CCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCC
Confidence            467778888888887544 544  88899999998888554   67888888888888886 665   578888888888


Q ss_pred             CCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCC-------cEEEcccCcCcccCCcccCCCC
Q 006559          148 NAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSI-------LDFNVSNNQLSGQIPAWMSPFG  211 (640)
Q Consensus       148 N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L-------~~l~ls~N~l~g~ip~~~~~~~  211 (640)
                      |+|++ +|.  +.  ++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|+ .||..+..+.
T Consensus       170 N~L~~-lp~--l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~  230 (571)
T 3cvr_A          170 NQLTF-LPE--LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLD  230 (571)
T ss_dssp             SCCSC-CCC--CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSC
T ss_pred             CCCCC-cch--hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCC
Confidence            88886 773  54  78888888888888 5555 432  66       88888888888 5777665443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.37  E-value=9.3e-13  Score=123.08  Aligned_cols=115  Identities=20%  Similarity=0.194  Sum_probs=98.2

Q ss_pred             hhccCCCCCCEEeCCCCcCCCCCCCCCCCC-CCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCC
Q 006559           85 EVLSRLTQLRLLSLKNNLLSSSNLNLSSWP-HLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLP  163 (640)
Q Consensus        85 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~-~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~  163 (640)
                      ..+.++++|+.|+|++|.++.. +.+..+. +|++|+|++|.|++.  ..+..+++|+.|+|++|.+++ +|+..+..++
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~   88 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLDQALP   88 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCT
T ss_pred             HhcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchhhcCC
Confidence            3467789999999999999976 5566665 999999999999986  679999999999999999995 5645568999


Q ss_pred             CCcEEEccCCcceecccC--CcCCCCCCcEEEcccCcCcccCCc
Q 006559          164 NLLTLRLEDNRFTGTLYS--VNSSSRSILDFNVSNNQLSGQIPA  205 (640)
Q Consensus       164 ~L~~L~L~~N~l~g~~~~--~~~~~~~L~~l~ls~N~l~g~ip~  205 (640)
                      +|++|+|++|+++. +|.  .+..+++|+.|++++|.++ .+|.
T Consensus        89 ~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~  130 (176)
T 1a9n_A           89 DLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKH  130 (176)
T ss_dssp             TCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTT
T ss_pred             CCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHh
Confidence            99999999999964 554  6778999999999999998 4555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.37  E-value=1.8e-12  Score=140.12  Aligned_cols=126  Identities=20%  Similarity=0.119  Sum_probs=87.5

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccC
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN  148 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  148 (640)
                      .+..|++.++...+.. .+..+++|+.|+|++|.+++.+  +..+++|+.|++++|++++.   .++.+++|+.|+|++|
T Consensus       149 ~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N  222 (457)
T 3bz5_A          149 QLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSN  222 (457)
T ss_dssp             TCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSS
T ss_pred             cCCEEECCCCCccccc-ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCC
Confidence            5677777777555544 4677788888888888887753  67777788888888887764   3777778888888888


Q ss_pred             CCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCC-------CCcEEEcccCcCcccCC
Q 006559          149 AYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSR-------SILDFNVSNNQLSGQIP  204 (640)
Q Consensus       149 ~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~-------~L~~l~ls~N~l~g~ip  204 (640)
                      ++++ +|   +..+++|+.|++++|+|++..+..+..+.       +|+.|++++|.+.|.+|
T Consensus       223 ~l~~-ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~  281 (457)
T 3bz5_A          223 KLTE-ID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ  281 (457)
T ss_dssp             CCSC-CC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred             cccc-cC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc
Confidence            8776 55   56777788888888877776544443333       44555566666666655

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.36  E-value=1.8e-15  Score=144.53  Aligned_cols=131  Identities=21%  Similarity=0.236  Sum_probs=109.4

Q ss_pred             EEEEEeCCCCCCCCc-------hhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCE
Q 006559           70 VIKLVLEDLDLTGPA-------EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRR  142 (640)
Q Consensus        70 v~~l~l~~~~l~g~~-------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~  142 (640)
                      ++.+++..+.++|..       ..+..+++|+.|+|++|.+++.+ .+..+++|++|+|++|.++ .+|..+..+++|+.
T Consensus        20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~   97 (198)
T 1ds9_A           20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEE   97 (198)
T ss_dssp             CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSE
T ss_pred             ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCE
Confidence            444444444555432       37889999999999999999865 8889999999999999998 68888888899999


Q ss_pred             EEcccCCCCCCCCchhcCCCCCCcEEEccCCcceeccc-CCcCCCCCCcEEEcccCcCcccCCc
Q 006559          143 VDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLY-SVNSSSRSILDFNVSNNQLSGQIPA  205 (640)
Q Consensus       143 L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~-~~~~~~~~L~~l~ls~N~l~g~ip~  205 (640)
                      |+|++|++++ +|  .+..+++|++|+|++|++++..+ ..+..+++|+.|++++|.+++.+|.
T Consensus        98 L~L~~N~l~~-l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           98 LWISYNQIAS-LS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             EEEEEEECCC-HH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             EECcCCcCCc-CC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            9999999996 55  57889999999999999997443 4677899999999999999988775

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.35  E-value=2e-12  Score=134.59  Aligned_cols=106  Identities=18%  Similarity=0.209  Sum_probs=95.0

Q ss_pred             EEeCCCC-cCCCCCCCCCCCCCCcEEEccc-ccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccC
Q 006559           95 LLSLKNN-LLSSSNLNLSSWPHLKHLYLSH-NRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLED  172 (640)
Q Consensus        95 ~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~  172 (640)
                      .+++++| .|++.|. +..+++|+.|+|++ |.|++..|..|++|++|+.|+|++|+|++..| ..|.+|++|+.|+|++
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH-HHhcCCcCCCEEeCCC
Confidence            4688888 8999877 99999999999996 99999888999999999999999999998655 7899999999999999


Q ss_pred             CcceecccCCcCCCCCCcEEEcccCcCcccC
Q 006559          173 NRFTGTLYSVNSSSRSILDFNVSNNQLSGQI  203 (640)
Q Consensus       173 N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~i  203 (640)
                      |+|++.++..+..+. |+.|+|++|.|...-
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHCSC  119 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccCCC
Confidence            999987777776665 999999999998653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.34  E-value=7.8e-12  Score=135.18  Aligned_cols=123  Identities=20%  Similarity=0.190  Sum_probs=91.3

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .++..|+|+++.+++..  ++.+++|+.|+|++|.+++.  .++.+++|++|++++|.+.+.+  .++.+++|+.|+|++
T Consensus       106 ~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF  179 (457)
T ss_dssp             TTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred             CcCCEEECCCCcCCeec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence            46788999999988853  88899999999999999885  3777778888888888666665  366777777777777


Q ss_pred             CCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCC
Q 006559          148 NAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP  204 (640)
Q Consensus       148 N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip  204 (640)
                      |++++ +|   +..+++|+.|++++|++++.   .+..+++|+.|++++|+|++ +|
T Consensus       180 n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip  228 (457)
T 3bz5_A          180 NKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID  228 (457)
T ss_dssp             SCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC
T ss_pred             Cccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC
Confidence            77775 44   56667777777777777764   25556777777777777776 44

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.32  E-value=1.3e-11  Score=133.31  Aligned_cols=120  Identities=23%  Similarity=0.357  Sum_probs=73.2

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccC
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN  148 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  148 (640)
                      .+..|+++++.+++....   .++|++|+|++|.+++.+ .+..+++|++|++++|++++ +|..+   .+|+.|+|++|
T Consensus       112 ~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n  183 (454)
T 1jl5_A          112 SLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNN  183 (454)
T ss_dssp             TCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSS
T ss_pred             CCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCC
Confidence            455556666555542211   156777777777777643 57777777777777777765 45432   46677777777


Q ss_pred             CCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCC
Q 006559          149 AYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP  204 (640)
Q Consensus       149 ~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip  204 (640)
                      ++++ +|  .+.++++|++|++++|++++ +|..   ..+|+.|++++|+++ .+|
T Consensus       184 ~l~~-l~--~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp  231 (454)
T 1jl5_A          184 QLEE-LP--ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP  231 (454)
T ss_dssp             CCSS-CC--CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC
T ss_pred             cCCc-Cc--cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc
Confidence            7765 45  36666777777777776665 3322   235666666666666 455

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.31  E-value=3.4e-12  Score=133.12  Aligned_cols=147  Identities=16%  Similarity=0.135  Sum_probs=105.7

Q ss_pred             CCCCCCceEecCC---------CCcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC--CCCCCCCCcE-EE
Q 006559           54 CFDSWRGVTCNPS---------THRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL--NLSSWPHLKH-LY  120 (640)
Q Consensus        54 c~~~w~gv~C~~~---------~~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~-L~  120 (640)
                      |.|+|+.|.|+..         ...++.|+|++|.++..+ ..|.+|++|+.|+|++|.+.+..+  .|.++++|.. ++
T Consensus         7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X            7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            6679999999753         135788899998888755 568889999999999998866433  4778887764 66


Q ss_pred             cccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccC-CcceecccCCcCCCC-CCcEEEcccCc
Q 006559          121 LSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLED-NRFTGTLYSVNSSSR-SILDFNVSNNQ  198 (640)
Q Consensus       121 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~-N~l~g~~~~~~~~~~-~L~~l~ls~N~  198 (640)
                      +++|+++...|..|.++++|+.|+|++|++++ +|...+....++..|++.+ |++....+..+..+. .++.|+|++|+
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~  165 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  165 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             ccCCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence            77788888888888899999999999998885 4434455555666777654 455544444444443 46667777777


Q ss_pred             Ccc
Q 006559          199 LSG  201 (640)
Q Consensus       199 l~g  201 (640)
                      |+.
T Consensus       166 i~~  168 (350)
T 4ay9_X          166 IQE  168 (350)
T ss_dssp             CCE
T ss_pred             ccC
Confidence            763

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.30  E-value=1.5e-13  Score=142.47  Aligned_cols=145  Identities=19%  Similarity=0.211  Sum_probs=110.8

Q ss_pred             CCCceEecCCCCcEEEEEeCCCCCCCCchhccCC--CCCCEEeCCCCcCCCCCCCCCCCCCCcEEEccccccccc-CCcc
Q 006559           57 SWRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRL--TQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGT-FPSG  133 (640)
Q Consensus        57 ~w~gv~C~~~~~~v~~l~l~~~~l~g~~~~l~~l--~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~-~p~~  133 (640)
                      .|.++.|++.  .+..++++++.+.  ...+..+  ++|+.|+|++|.+.+..+.+..+++|++|+|++|.+++. +|..
T Consensus        38 ~W~~~~~~~~--~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~  113 (336)
T 2ast_B           38 RWYRLASDES--LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI  113 (336)
T ss_dssp             HHHHHHTCST--TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred             HHHHHhcCch--hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH
Confidence            7888888753  4667788877766  3445556  788888888888888777777788888888888888766 7777


Q ss_pred             CCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCC-cceec-ccCCcCCCCCCcEEEcccC-cCccc-CCcc
Q 006559          134 VSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDN-RFTGT-LYSVNSSSRSILDFNVSNN-QLSGQ-IPAW  206 (640)
Q Consensus       134 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N-~l~g~-~~~~~~~~~~L~~l~ls~N-~l~g~-ip~~  206 (640)
                      +..+++|+.|+|++|.+++..| ..+..+++|++|+|++| .+++. ++..+..+++|+.|++++| ++++. +|..
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  189 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIV-NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA  189 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHH-HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred             HhhCCCCCEEeCcCcccCHHHH-HHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence            8888888888888888876666 56778888888888888 67763 5666667788888888888 88754 4443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.28  E-value=2.4e-11  Score=131.17  Aligned_cols=135  Identities=21%  Similarity=0.222  Sum_probs=101.0

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .++..|+++++.+++.+.   .+++|+.|+|++|.+++.+..   .++|++|+|++|.+++ +| .|+++++|++|+|++
T Consensus        91 ~~L~~L~l~~n~l~~lp~---~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~  162 (454)
T 1jl5_A           91 PHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDN  162 (454)
T ss_dssp             TTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred             CCCCEEEccCCcCCcccc---ccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCC
Confidence            367788888888887443   247888888888888775321   1689999999999987 77 588999999999999


Q ss_pred             CCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCCCCCCCCC
Q 006559          148 NAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGN  218 (640)
Q Consensus       148 N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~gn  218 (640)
                      |++++ +| ..   .++|++|+|++|++++ +| .+..+++|+.|++++|++++ +|.....+....+.+|
T Consensus       163 N~l~~-lp-~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n  225 (454)
T 1jl5_A          163 NSLKK-LP-DL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNN  225 (454)
T ss_dssp             SCCSC-CC-CC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSS
T ss_pred             CcCcc-cC-CC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCC
Confidence            99985 66 32   3589999999999987 45 57788999999999999986 5554444433333344

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.26  E-value=1.2e-11  Score=138.11  Aligned_cols=64  Identities=25%  Similarity=0.362  Sum_probs=40.6

Q ss_pred             CCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCC
Q 006559          138 RHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFG  211 (640)
Q Consensus       138 ~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~  211 (640)
                      ++|+.|+|++|++++ +|    ..+++|+.|+|++|+|+. +|.   .+++|+.|+|++|+|+ .+|..+..++
T Consensus       221 ~~L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~  284 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP----VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLS  284 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSC
T ss_pred             CCCCEEEccCCccCc-CC----CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhcc
Confidence            566777777777764 55    345667777777777763 333   3566777777777777 5666554443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.25  E-value=4.1e-12  Score=141.96  Aligned_cols=137  Identities=23%  Similarity=0.287  Sum_probs=86.6

Q ss_pred             CCCCCCCCCCCCCCCceEec------CCCCcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcE
Q 006559           45 SSWVNSTDPCFDSWRGVTCN------PSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKH  118 (640)
Q Consensus        45 ~sW~~~~~~c~~~w~gv~C~------~~~~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~  118 (640)
                      .+|....++|  .|+|..|.      .....+..|++++++++..+..+.  ++|+.|+|++|.|+..+.   .+++|++
T Consensus        13 ~~W~~~~~~~--~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~   85 (622)
T 3g06_A           13 SAWRRAAPAE--ESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRT   85 (622)
T ss_dssp             HHHHHTCCGG--GHHHHHHHHHHHHHHHHHCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCE
T ss_pred             HHHHhcCCcc--hhccccccCcccccccCCCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCE
Confidence            3574344444  78664321      111246778888888775544343  678888888888776544   4677788


Q ss_pred             EEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCc
Q 006559          119 LYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQ  198 (640)
Q Consensus       119 L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~  198 (640)
                      |+|++|+|++ +|.   .+++|++|+|++|++++ +|.    .+++|+.|+|++|++++ +|..   +++|+.|+|++|+
T Consensus        86 L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~  152 (622)
T 3g06_A           86 LEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQ  152 (622)
T ss_dssp             EEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSC
T ss_pred             EEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCc
Confidence            8888887764 554   56777777777777774 552    45667777777777665 3332   3566666777766


Q ss_pred             Ccc
Q 006559          199 LSG  201 (640)
Q Consensus       199 l~g  201 (640)
                      |++
T Consensus       153 l~~  155 (622)
T 3g06_A          153 LAS  155 (622)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.21  E-value=1.9e-12  Score=137.01  Aligned_cols=139  Identities=20%  Similarity=0.279  Sum_probs=109.8

Q ss_pred             CcEEEEEeCCCCCCCC-----chhccCC---------CCCCEEeCCCCcCCC-CCC----CCCCCCCCcEEEccccccc-
Q 006559           68 HRVIKLVLEDLDLTGP-----AEVLSRL---------TQLRLLSLKNNLLSS-SNL----NLSSWPHLKHLYLSHNRFT-  127 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~-----~~~l~~l---------~~L~~L~Ls~N~l~~-~~~----~~~~l~~L~~L~Ls~N~l~-  127 (640)
                      .++..|+|++|.++..     ...+..+         ++|+.|+|++|.++. ..+    .+..+++|++|+|++|.++ 
T Consensus       122 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  201 (386)
T 2ca6_A          122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP  201 (386)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH
T ss_pred             CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCH
Confidence            4688899999998642     2445555         899999999999973 222    3567889999999999997 


Q ss_pred             -c---cCCccCCCCCCCCEEEcccCCCC----CCCCchhcCCCCCCcEEEccCCcceec----ccCCc--CCCCCCcEEE
Q 006559          128 -G---TFPSGVSSLRHLRRVDLSHNAYE----GEIPMTELTRLPNLLTLRLEDNRFTGT----LYSVN--SSSRSILDFN  193 (640)
Q Consensus       128 -g---~~p~~~~~l~~L~~L~Ls~N~l~----g~~p~~~~~~l~~L~~L~L~~N~l~g~----~~~~~--~~~~~L~~l~  193 (640)
                       |   .+|..+..+++|+.|+|++|.++    +.+| ..+..+++|++|+|++|.+++.    ++..+  ..+++|+.|+
T Consensus       202 ~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~  280 (386)
T 2ca6_A          202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR  280 (386)
T ss_dssp             HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEE
T ss_pred             hHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH-HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEE
Confidence             3   45557888999999999999996    5666 5788899999999999999876    45555  3388899999


Q ss_pred             cccCcCcc----cCCccc
Q 006559          194 VSNNQLSG----QIPAWM  207 (640)
Q Consensus       194 ls~N~l~g----~ip~~~  207 (640)
                      |++|.|++    .+|..+
T Consensus       281 L~~n~i~~~g~~~l~~~l  298 (386)
T 2ca6_A          281 LQYNEIELDAVRTLKTVI  298 (386)
T ss_dssp             CCSSCCBHHHHHHHHHHH
T ss_pred             CcCCcCCHHHHHHHHHHH
Confidence            99999998    577655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.20  E-value=4.5e-13  Score=138.73  Aligned_cols=137  Identities=20%  Similarity=0.210  Sum_probs=95.0

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCC--CCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSS--NLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDL  145 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  145 (640)
                      ..+..+++.++.+++....+..+++|+.|+|++|.+++.  +..+..+++|++|+|++|.+++..|..++++++|++|+|
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            357777888887777766667778888888888877653  224667778888888888877777777777788888888


Q ss_pred             ccC-CCCCC-CCchhcCCCCCCcEEEccCC-cceec-ccCCcCCCC-CCcEEEcccC--cCc-ccCCc
Q 006559          146 SHN-AYEGE-IPMTELTRLPNLLTLRLEDN-RFTGT-LYSVNSSSR-SILDFNVSNN--QLS-GQIPA  205 (640)
Q Consensus       146 s~N-~l~g~-~p~~~~~~l~~L~~L~L~~N-~l~g~-~~~~~~~~~-~L~~l~ls~N--~l~-g~ip~  205 (640)
                      ++| .+++. +| ..+.++++|++|+|++| .+++. ++..+..++ +|+.|++++|  .++ +.+|.
T Consensus       150 ~~~~~l~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~  216 (336)
T 2ast_B          150 SGCSGFSEFALQ-TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST  216 (336)
T ss_dssp             TTCBSCCHHHHH-HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred             CCCCCCCHHHHH-HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence            877 56642 44 44666777777777777 77654 455555566 7777777777  444 34443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.17  E-value=1.3e-13  Score=131.52  Aligned_cols=127  Identities=21%  Similarity=0.253  Sum_probs=108.3

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .++..|+|+++.+++.+ .+..+++|+.|+|++|.++..+..+..+++|++|+|++|.+++ +| .+..+++|+.|+|++
T Consensus        48 ~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~  124 (198)
T 1ds9_A           48 KACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSN  124 (198)
T ss_dssp             TTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESE
T ss_pred             CCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCC
Confidence            36889999999998855 8899999999999999999766556677999999999999997 45 688999999999999


Q ss_pred             CCCCCCCCc-hhcCCCCCCcEEEccCCcceecccCC----------cCCCCCCcEEEcccCcCc
Q 006559          148 NAYEGEIPM-TELTRLPNLLTLRLEDNRFTGTLYSV----------NSSSRSILDFNVSNNQLS  200 (640)
Q Consensus       148 N~l~g~~p~-~~~~~l~~L~~L~L~~N~l~g~~~~~----------~~~~~~L~~l~ls~N~l~  200 (640)
                      |++++ +|. ..+..+++|++|++++|.+++.+|..          +..+++|+.||  +|.++
T Consensus       125 N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          125 NKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CcCCc-hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            99985 332 46899999999999999999987763          66788999887  66665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.13  E-value=1.4e-12  Score=137.90  Aligned_cols=133  Identities=26%  Similarity=0.338  Sum_probs=67.6

Q ss_pred             cEEEEEeCCCCCCCC-----chhccCCCCCCEEeCCCCcCCCCCC-C----CCCC---------CCCcEEEccccccc-c
Q 006559           69 RVIKLVLEDLDLTGP-----AEVLSRLTQLRLLSLKNNLLSSSNL-N----LSSW---------PHLKHLYLSHNRFT-G  128 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~-----~~~l~~l~~L~~L~Ls~N~l~~~~~-~----~~~l---------~~L~~L~Ls~N~l~-g  128 (640)
                      ++..|+|++|.+++.     +..+..+++|+.|+|++|.+++..+ .    +..+         ++|++|+|++|+++ +
T Consensus        95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~  174 (386)
T 2ca6_A           95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG  174 (386)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence            455555555555542     2344555555555555555543211 1    1222         55566666666554 2


Q ss_pred             cCC---ccCCCCCCCCEEEcccCCCC--C---CCCchhcCCCCCCcEEEccCCcce----ecccCCcCCCCCCcEEEccc
Q 006559          129 TFP---SGVSSLRHLRRVDLSHNAYE--G---EIPMTELTRLPNLLTLRLEDNRFT----GTLYSVNSSSRSILDFNVSN  196 (640)
Q Consensus       129 ~~p---~~~~~l~~L~~L~Ls~N~l~--g---~~p~~~~~~l~~L~~L~L~~N~l~----g~~~~~~~~~~~L~~l~ls~  196 (640)
                      .+|   ..+..+++|+.|+|++|.++  |   .+| ..+..+++|+.|+|++|.++    +.+|..+..+++|+.|+|++
T Consensus       175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~-~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~  253 (386)
T 2ca6_A          175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL-EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  253 (386)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHH-TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHH-HHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence            333   23445556666666666554  1   111 24455556666666666654    44555555555666666666


Q ss_pred             CcCccc
Q 006559          197 NQLSGQ  202 (640)
Q Consensus       197 N~l~g~  202 (640)
                      |.|++.
T Consensus       254 n~i~~~  259 (386)
T 2ca6_A          254 CLLSAR  259 (386)
T ss_dssp             CCCCHH
T ss_pred             CCCchh
Confidence            665544

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.12  E-value=2.6e-10  Score=113.51  Aligned_cols=134  Identities=15%  Similarity=0.098  Sum_probs=103.4

Q ss_pred             ccccccCcceEEEEEeCCCcEEEEEEeccc--cchHHHHHHHHHHhccC-CCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          339 ELLGKGCVGATYKVVLDGGDVVVVKRIRER--KKKREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ..++.|+++.||++... +..+++|.....  .....+.+|+++++.+. |..+.++++++...+..|+||||+++.+|.
T Consensus        20 ~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~   98 (263)
T 3tm0_A           20 KDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCS   98 (263)
T ss_dssp             ECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSSEEHH
T ss_pred             eeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEecCCeehh
Confidence            45677778899998754 678999998753  22345778888888774 677888999998888999999999999998


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCC-------------------------------------------
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN-------------------------------------------  452 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-------------------------------------------  452 (640)
                      +.+...          .....++.+++++|..||+..                                           
T Consensus        99 ~~~~~~----------~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (263)
T 3tm0_A           99 EEYEDE----------QSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPR  168 (263)
T ss_dssp             HHCCTT----------TCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHH
T ss_pred             hccCCc----------ccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccccCCCHH
Confidence            764211          123467889999999999711                                           


Q ss_pred             -------------CCCceecCCCCCCeEECCCCCeEEccCCccc
Q 006559          453 -------------KAHLFHGHLSSSNIVVDQLGNACISDIGVHQ  483 (640)
Q Consensus       453 -------------~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~  483 (640)
                                   ...++|+|+++.|||++++..+.|+||+.+.
T Consensus       169 ~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T 3tm0_A          169 ELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             HHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred             HHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence                         1448999999999999876666799998764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.10  E-value=5.4e-12  Score=132.24  Aligned_cols=136  Identities=19%  Similarity=0.229  Sum_probs=88.9

Q ss_pred             cEEEEEeCCCCCCCCc-----hhccCCC-CCCEEeCCCCcCCCCCC-CCCCC-----CCCcEEEcccccccccCCccCC-
Q 006559           69 RVIKLVLEDLDLTGPA-----EVLSRLT-QLRLLSLKNNLLSSSNL-NLSSW-----PHLKHLYLSHNRFTGTFPSGVS-  135 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~-----~~l~~l~-~L~~L~Ls~N~l~~~~~-~~~~l-----~~L~~L~Ls~N~l~g~~p~~~~-  135 (640)
                      .++.|+|+++.+++..     ..+..++ +|+.|+|++|.+++..+ .+..+     ++|++|+|++|.+++..+..+. 
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            4777888887777653     5567777 78888888887776543 23332     7788888888888766655433 


Q ss_pred             ---CC-CCCCEEEcccCCCCCCCCchh----cCC-CCCCcEEEccCCcceec----ccCCcCCCC-CCcEEEcccCcCcc
Q 006559          136 ---SL-RHLRRVDLSHNAYEGEIPMTE----LTR-LPNLLTLRLEDNRFTGT----LYSVNSSSR-SILDFNVSNNQLSG  201 (640)
Q Consensus       136 ---~l-~~L~~L~Ls~N~l~g~~p~~~----~~~-l~~L~~L~L~~N~l~g~----~~~~~~~~~-~L~~l~ls~N~l~g  201 (640)
                         .+ ++|+.|+|++|.+++..+ ..    +.. .++|++|+|++|++++.    ++..+.... +|+.|+|++|+|++
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSS-SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCH-HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHhCCCCccEEECcCCcCCcHHH-HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence               33 778888888888764332 33    233 25788888888887743    223333343 78888888888776


Q ss_pred             cCCc
Q 006559          202 QIPA  205 (640)
Q Consensus       202 ~ip~  205 (640)
                      ..+.
T Consensus       182 ~~~~  185 (362)
T 3goz_A          182 KNCA  185 (362)
T ss_dssp             SCHH
T ss_pred             hhHH
Confidence            6554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.10  E-value=6.9e-12  Score=131.42  Aligned_cols=131  Identities=22%  Similarity=0.186  Sum_probs=104.8

Q ss_pred             EEeCCCCCCCCchhccC-CCCCCEEeCCCCcCCCCCC-----CCCCCC-CCcEEEcccccccccCCccCCCC-----CCC
Q 006559           73 LVLEDLDLTGPAEVLSR-LTQLRLLSLKNNLLSSSNL-----NLSSWP-HLKHLYLSHNRFTGTFPSGVSSL-----RHL  140 (640)
Q Consensus        73 l~l~~~~l~g~~~~l~~-l~~L~~L~Ls~N~l~~~~~-----~~~~l~-~L~~L~Ls~N~l~g~~p~~~~~l-----~~L  140 (640)
                      .+|+.++++|+.+.+.. .++|+.|+|++|.+++..+     .+..++ +|++|+|++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            56788899998755544 4559999999999988764     466788 89999999999998888777665     999


Q ss_pred             CEEEcccCCCCCCCCchh----cCCC-CCCcEEEccCCcceecccCCc----CC-CCCCcEEEcccCcCcccCC
Q 006559          141 RRVDLSHNAYEGEIPMTE----LTRL-PNLLTLRLEDNRFTGTLYSVN----SS-SRSILDFNVSNNQLSGQIP  204 (640)
Q Consensus       141 ~~L~Ls~N~l~g~~p~~~----~~~l-~~L~~L~L~~N~l~g~~~~~~----~~-~~~L~~l~ls~N~l~g~ip  204 (640)
                      +.|+|++|.+++..+ ..    +..+ ++|++|+|++|++++..+..+    .. ..+|+.|+|++|+|++..+
T Consensus        83 ~~L~Ls~n~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  155 (362)
T 3goz_A           83 TSLNLSGNFLSYKSS-DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS  155 (362)
T ss_dssp             CEEECCSSCGGGSCH-HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH
T ss_pred             cEEECcCCcCChHHH-HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH
Confidence            999999999986554 43    3444 899999999999987665443    23 3699999999999996443

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.09  E-value=3.1e-10  Score=112.64  Aligned_cols=129  Identities=16%  Similarity=0.134  Sum_probs=96.2

Q ss_pred             cccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhccCCCc--ccceeEEEEcCCeEEEEEeccCCCCHHHhhc
Q 006559          342 GKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSN--IVSIRAYCNGKDELFLVYDYLPHGSLHSLLH  419 (640)
Q Consensus       342 G~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~n--iv~l~~~~~~~~~~~lV~Ey~~~gsL~~~l~  419 (640)
                      +.|..+.||++...+|..+++|..... ....+..|+++++.+.+.+  +.+++++....+..++||||+++.+|.  ..
T Consensus        29 ~gg~~~~v~~~~~~~g~~~vlK~~~~~-~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~--~~  105 (264)
T 1nd4_A           29 IGCSDAAVFRLSAQGRPVLFVKTDLSG-ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLL--SS  105 (264)
T ss_dssp             CTTSSCEEEEEECTTSCCEEEEEECSC-TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETT--TS
T ss_pred             cCCCCceEEEEecCCCCeEEEEeCCcc-cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcccC--cC
Confidence            355568999998877888999987654 3345677888888776544  456888888878899999999998884  22


Q ss_pred             cCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCC-----------------------------------------------
Q 006559          420 GSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN-----------------------------------------------  452 (640)
Q Consensus       420 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----------------------------------------------  452 (640)
                      .        .+   ...++.++++.|..||...                                               
T Consensus       106 ~--------~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  174 (264)
T 1nd4_A          106 H--------LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARL  174 (264)
T ss_dssp             C--------CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHH
T ss_pred             c--------CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHHH
Confidence            1        11   2256778888888888642                                               


Q ss_pred             --------CCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          453 --------KAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       453 --------~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                              ...++|+|++|.|||+++++.+.|+|||.+..
T Consensus       175 ~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~  214 (264)
T 1nd4_A          175 KARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV  214 (264)
T ss_dssp             HHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             HHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence                    12299999999999998876677999998753

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.99  E-value=9.5e-10  Score=114.51  Aligned_cols=126  Identities=15%  Similarity=0.097  Sum_probs=100.1

Q ss_pred             EEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCc-cCCCCCCCCE-EEcccCC
Q 006559           73 LVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPS-GVSSLRHLRR-VDLSHNA  149 (640)
Q Consensus        73 l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~-L~Ls~N~  149 (640)
                      ++.++++|+..+..+  .++|+.|+|++|+|+..++ .|.++++|++|+|++|++.+.+|. .|.++++|+. +++++|+
T Consensus        14 v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~   91 (350)
T 4ay9_X           14 FLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   91 (350)
T ss_dssp             EEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred             EEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence            466777887655444  3689999999999998776 589999999999999998877765 6788988775 6677899


Q ss_pred             CCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEccc-CcCcc
Q 006559          150 YEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSN-NQLSG  201 (640)
Q Consensus       150 l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~-N~l~g  201 (640)
                      ++. +|+..|..+++|++|++++|++++..+..+....++..|++++ |++..
T Consensus        92 l~~-l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~  143 (350)
T 4ay9_X           92 LLY-INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT  143 (350)
T ss_dssp             CCE-ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE
T ss_pred             ccc-cCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc
Confidence            985 5547889999999999999999987777776677788888876 45553

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.97  E-value=1.8e-09  Score=112.70  Aligned_cols=138  Identities=17%  Similarity=0.291  Sum_probs=102.9

Q ss_pred             ccccccCcceEEEEEeCCCcEEEEEEec--ccc---chHHHHHHHHHHhccC--CCcccceeEEEEcC---CeEEEEEec
Q 006559          339 ELLGKGCVGATYKVVLDGGDVVVVKRIR--ERK---KKREVDEWLRVIGGLR--HSNIVSIRAYCNGK---DELFLVYDY  408 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~~~vavK~l~--~~~---~~~~~~~e~~~l~~l~--H~niv~l~~~~~~~---~~~~lV~Ey  408 (640)
                      +.|+.|.++.||+....+ ..+++|+..  ...   ....+.+|.++++.+.  +..+.++++++.+.   +..|+||||
T Consensus        44 ~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme~  122 (359)
T 3dxp_A           44 EQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIMEF  122 (359)
T ss_dssp             EECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEEC
T ss_pred             EEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEEe
Confidence            458899999999998765 567788776  331   2345778888888876  45578889888766   458999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCC------------------------------------
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN------------------------------------  452 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~------------------------------------  452 (640)
                      +++..+.+...       ..++...+..++.++++.|..||...                                    
T Consensus       123 v~G~~l~~~~~-------~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (359)
T 3dxp_A          123 VSGRVLWDQSL-------PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIP  195 (359)
T ss_dssp             CCCBCCCCTTC-------TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCH
T ss_pred             cCCeecCCCcc-------ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCCh
Confidence            99877743211       13567788889999999999999731                                    


Q ss_pred             -------------------CCCceecCCCCCCeEECCCCC--eEEccCCcccc
Q 006559          453 -------------------KAHLFHGHLSSSNIVVDQLGN--ACISDIGVHQL  484 (640)
Q Consensus       453 -------------------~~~ivHrdlk~~NILl~~~~~--~kl~DfGl~~~  484 (640)
                                         ...++|+|+++.|||++.++.  +.|.||+.+..
T Consensus       196 ~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          196 AMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             HHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             HHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence                               256999999999999997753  68999998765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.94  E-value=1.7e-11  Score=132.61  Aligned_cols=138  Identities=16%  Similarity=0.137  Sum_probs=80.9

Q ss_pred             cEEEEEeCCCCCCCCc------hhccCCCCCCEEeCCCCcCCCC-----CCCCCCCCCCcEEEcccccccccCCccCC--
Q 006559           69 RVIKLVLEDLDLTGPA------EVLSRLTQLRLLSLKNNLLSSS-----NLNLSSWPHLKHLYLSHNRFTGTFPSGVS--  135 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~------~~l~~l~~L~~L~Ls~N~l~~~-----~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--  135 (640)
                      .+..|+|+++.++...      ..+..+++|+.|+|++|.+++.     +..+..+++|++|+|++|.+++..+..+.  
T Consensus       228 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~  307 (461)
T 1z7x_W          228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET  307 (461)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred             CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH
Confidence            5667777777665421      1223567777777777777652     22345567777777777777543332222  


Q ss_pred             ---CCCCCCEEEcccCCCCCC----CCchhcCCCCCCcEEEccCCcceecccCCcC-----CCCCCcEEEcccCcCcc--
Q 006559          136 ---SLRHLRRVDLSHNAYEGE----IPMTELTRLPNLLTLRLEDNRFTGTLYSVNS-----SSRSILDFNVSNNQLSG--  201 (640)
Q Consensus       136 ---~l~~L~~L~Ls~N~l~g~----~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~-----~~~~L~~l~ls~N~l~g--  201 (640)
                         ..++|+.|+|++|.+++.    +| ..+..+++|++|+|++|.+++..+..+.     ..++|+.|++++|++++  
T Consensus       308 l~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~  386 (461)
T 1z7x_W          308 LLEPGCQLESLWVKSCSFTAACCSHFS-SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS  386 (461)
T ss_dssp             HTSTTCCCCEEECTTSCCBGGGHHHHH-HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred             hccCCccceeeEcCCCCCchHHHHHHH-HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh
Confidence               235677777777776643    23 3445566777777777776654333221     14567777777777765  


Q ss_pred             --cCCccc
Q 006559          202 --QIPAWM  207 (640)
Q Consensus       202 --~ip~~~  207 (640)
                        .+|..+
T Consensus       387 ~~~l~~~l  394 (461)
T 1z7x_W          387 CSSLAATL  394 (461)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence              555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.86  E-value=4.9e-11  Score=128.98  Aligned_cols=133  Identities=17%  Similarity=0.153  Sum_probs=78.4

Q ss_pred             cEEEEEeCCCCCCCCc-hhc-----cCCCCCCEEeCCCCcCCCC-----CCCCCCCCCCcEEEcccccccccC-----Cc
Q 006559           69 RVIKLVLEDLDLTGPA-EVL-----SRLTQLRLLSLKNNLLSSS-----NLNLSSWPHLKHLYLSHNRFTGTF-----PS  132 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~-~~l-----~~l~~L~~L~Ls~N~l~~~-----~~~~~~l~~L~~L~Ls~N~l~g~~-----p~  132 (640)
                      .+..|+|+++.++... ..+     ..+++|+.|+|++|.+++.     +..+..+++|++|+|++|.+++..     +.
T Consensus       171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  250 (461)
T 1z7x_W          171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG  250 (461)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred             CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH
Confidence            5677777777665421 112     1355777777777777653     123455677777777777766432     22


Q ss_pred             cCCCCCCCCEEEcccCCCCCC----CCchhcCCCCCCcEEEccCCcceecccCCc-----CCCCCCcEEEcccCcCccc
Q 006559          133 GVSSLRHLRRVDLSHNAYEGE----IPMTELTRLPNLLTLRLEDNRFTGTLYSVN-----SSSRSILDFNVSNNQLSGQ  202 (640)
Q Consensus       133 ~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~-----~~~~~L~~l~ls~N~l~g~  202 (640)
                      .+..+++|+.|+|++|.+++.    ++ ..+..+++|++|+|++|.+++..+..+     ...++|+.|++++|.+++.
T Consensus       251 ~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  328 (461)
T 1z7x_W          251 LLHPSSRLRTLWIWECGITAKGCGDLC-RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA  328 (461)
T ss_dssp             HTSTTCCCCEEECTTSCCCHHHHHHHH-HHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             HhcCCCCceEEECcCCCCCHHHHHHHH-HHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence            333567777777777777642    34 345556777777777777654332221     1224666777777766654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.83  E-value=2.2e-11  Score=120.64  Aligned_cols=144  Identities=16%  Similarity=0.186  Sum_probs=71.2

Q ss_pred             CCCceEecCCCCcEEEEEeCCC---CCCCCc--hhccCCCCCCEEeCCCCcCCCCC--CCCCCCCCCcE--EEccccc--
Q 006559           57 SWRGVTCNPSTHRVIKLVLEDL---DLTGPA--EVLSRLTQLRLLSLKNNLLSSSN--LNLSSWPHLKH--LYLSHNR--  125 (640)
Q Consensus        57 ~w~gv~C~~~~~~v~~l~l~~~---~l~g~~--~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~l~~L~~--L~Ls~N~--  125 (640)
                      +|.|+.|++...+|+.+...+.   .+.+..  +.+..|+.  .|+..+|..++..  ..+...+.|..  ++++.|.  
T Consensus        79 ~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~  156 (267)
T 3rw6_A           79 AVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRS  156 (267)
T ss_dssp             HTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSHH
T ss_pred             hcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCCHHH
Confidence            7999999987667766666542   222221  22222211  1122222222210  01333344444  5555552  


Q ss_pred             -ccccCCccCCCCCCCCEEEcccCCCCC--CCCchhcCCCCCCcEEEccCCcceecc-cCCcCCCCCCcEEEcccCcCcc
Q 006559          126 -FTGTFPSGVSSLRHLRRVDLSHNAYEG--EIPMTELTRLPNLLTLRLEDNRFTGTL-YSVNSSSRSILDFNVSNNQLSG  201 (640)
Q Consensus       126 -l~g~~p~~~~~l~~L~~L~Ls~N~l~g--~~p~~~~~~l~~L~~L~L~~N~l~g~~-~~~~~~~~~L~~l~ls~N~l~g  201 (640)
                       +.+.++....++++|+.|+|++|+|++  .+| ..+..+++|+.|+|++|+|++.- ...+..+ +|+.|+|++|.+++
T Consensus       157 ~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~-~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          157 CMAATLRIIEENIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD  234 (267)
T ss_dssp             HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGT-THHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred             HHHHHHHHHHhhCCCCCEEECCCCCCCCCccch-hHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence             222222222456666666666666665  333 34456666666666666666541 1112222 66667777777666


Q ss_pred             cCC
Q 006559          202 QIP  204 (640)
Q Consensus       202 ~ip  204 (640)
                      .+|
T Consensus       235 ~~~  237 (267)
T 3rw6_A          235 TFR  237 (267)
T ss_dssp             GCS
T ss_pred             ccC
Confidence            655

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.83  E-value=1.4e-10  Score=121.74  Aligned_cols=133  Identities=22%  Similarity=0.253  Sum_probs=79.5

Q ss_pred             cEEEEEeCCCCCCCCc--hhccCCCCCCEEeCCCCcCCCCCC-CC-----CCCCCCcEEEcccccccc----cCCccCCC
Q 006559           69 RVIKLVLEDLDLTGPA--EVLSRLTQLRLLSLKNNLLSSSNL-NL-----SSWPHLKHLYLSHNRFTG----TFPSGVSS  136 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~--~~l~~l~~L~~L~Ls~N~l~~~~~-~~-----~~l~~L~~L~Ls~N~l~g----~~p~~~~~  136 (640)
                      .+..|+|++|.++...  .....+++|+.|+|++|.|+.... .+     ...++|++|+|++|.|+.    .++..+..
T Consensus       102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~  181 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG  181 (372)
T ss_dssp             CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence            5777777777665321  222344567777777777754321 11     245667777777777754    23344456


Q ss_pred             CCCCCEEEcccCCCCCC----CCchhcCCCCCCcEEEccCCcceec----ccCCcCCCCCCcEEEcccCcCccc
Q 006559          137 LRHLRRVDLSHNAYEGE----IPMTELTRLPNLLTLRLEDNRFTGT----LYSVNSSSRSILDFNVSNNQLSGQ  202 (640)
Q Consensus       137 l~~L~~L~Ls~N~l~g~----~p~~~~~~l~~L~~L~L~~N~l~g~----~~~~~~~~~~L~~l~ls~N~l~g~  202 (640)
                      +++|++|||++|.+++.    ++ ..+...++|+.|+|++|.|+..    ++..+...++|+.|+|++|.|+..
T Consensus       182 ~~~L~~L~Ls~N~l~~~g~~~L~-~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          182 NTSVTHLSLLHTGLGDEGLELLA-AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             CSSCCEEECTTSSCHHHHHHHHH-HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             CCCcCEEeCCCCCCCcHHHHHHH-HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            67777777777777531    11 3345566777777777777643    233334456677777777777644

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.75  E-value=5.2e-09  Score=106.59  Aligned_cols=187  Identities=18%  Similarity=0.154  Sum_probs=115.9

Q ss_pred             ccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhccC-CCc--ccceeEEEEcCC---eEEEEEeccCCC
Q 006559          339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLR-HSN--IVSIRAYCNGKD---ELFLVYDYLPHG  412 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~-H~n--iv~l~~~~~~~~---~~~lV~Ey~~~g  412 (640)
                      +.++.|.+..||++.    ..+++|+.........+..|.++++.+. +..  +.+.+......+   ..|+||||+++.
T Consensus        26 ~~~~~G~~n~v~~v~----~~~vlR~~~~~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G~  101 (304)
T 3sg8_A           26 EISGEGNDCIAYEIN----RDFIFKFPKHSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKGV  101 (304)
T ss_dssp             CEEEECSSEEEEEST----TSEEEEEESSHHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCCCE
T ss_pred             EecCCCCcceEEEEC----CEEEEEecCCcchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccCCe
Confidence            357889999999863    5678888665444566788888888773 333  334444433322   358999999998


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcC-----------------------------------------
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY-----------------------------------------  451 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-----------------------------------------  451 (640)
                      .+.+....       .++..++..++.++++.|..||..                                         
T Consensus       102 ~l~~~~~~-------~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  174 (304)
T 3sg8_A          102 PLTPLLLN-------NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVD  174 (304)
T ss_dssp             ECCHHHHH-------TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred             ECCccccc-------cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHH
Confidence            87653221       245566677777777777777751                                         


Q ss_pred             --------------CCCCceecCCCCCCeEECC--CCCeEEccCCcccccCCCc--cccccc---cCCccccCCCCcccc
Q 006559          452 --------------NKAHLFHGHLSSSNIVVDQ--LGNACISDIGVHQLFHTPF--FINDAY---NAPELKFNNNNNYSQ  510 (640)
Q Consensus       452 --------------~~~~ivHrdlk~~NILl~~--~~~~kl~DfGl~~~~~~~~--~~~~~y---~aPE~~~~~~~~~~~  510 (640)
                                    ..+.++|+|+++.||++++  ...+.|.||+.+.......  .....+   ..|+....-...+..
T Consensus       175 ~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~  254 (304)
T 3sg8_A          175 DFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKH  254 (304)
T ss_dssp             HHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTC
T ss_pred             HHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCC
Confidence                          1235799999999999998  4567899999876543211  000000   111110000000000


Q ss_pred             -------CCCCCccchHHHHHHHHHHHhCCCCC
Q 006559          511 -------RKFWQRCDVYSFGVVLLEILTGKMAK  536 (640)
Q Consensus       511 -------~~~~~k~DV~SfGvvl~el~tg~~p~  536 (640)
                             ....-..+.|++|.++|++.+|..++
T Consensus       255 ~~~~~~~~r~~~~~~~~~l~~~~~~~~~g~~~~  287 (304)
T 3sg8_A          255 KDIPTVLEKYRMKEKYWSFEKIIYGKEYGYMDW  287 (304)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence                   00111258999999999999998765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.67  E-value=5.9e-10  Score=116.88  Aligned_cols=133  Identities=18%  Similarity=0.198  Sum_probs=99.4

Q ss_pred             cEEEEEeCCCCCCCCc-----hhcc-CCCCCCEEeCCCCcCCCCCC-C-CCCCCCCcEEEcccccccccCCccC-----C
Q 006559           69 RVIKLVLEDLDLTGPA-----EVLS-RLTQLRLLSLKNNLLSSSNL-N-LSSWPHLKHLYLSHNRFTGTFPSGV-----S  135 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~-----~~l~-~l~~L~~L~Ls~N~l~~~~~-~-~~~l~~L~~L~Ls~N~l~g~~p~~~-----~  135 (640)
                      .+..|+|+++.++...     ..+. ..++|+.|+|++|.++.... . ...+++|+.|+|++|.|+......+     .
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            5789999999987632     2222 33799999999999975322 2 2346789999999999975433333     3


Q ss_pred             CCCCCCEEEcccCCCCCC----CCchhcCCCCCCcEEEccCCcceec----ccCCcCCCCCCcEEEcccCcCccc
Q 006559          136 SLRHLRRVDLSHNAYEGE----IPMTELTRLPNLLTLRLEDNRFTGT----LYSVNSSSRSILDFNVSNNQLSGQ  202 (640)
Q Consensus       136 ~l~~L~~L~Ls~N~l~g~----~p~~~~~~l~~L~~L~L~~N~l~g~----~~~~~~~~~~L~~l~ls~N~l~g~  202 (640)
                      ..++|+.|+|++|.++..    ++ ..+..+++|++|+|++|.|+..    ++..+...++|+.|+|++|.|+..
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~-~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~  226 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLM-EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT  226 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHH-HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHH-HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence            568999999999999741    22 3346788999999999999853    344556678999999999999853

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.57  E-value=2.2e-07  Score=95.62  Aligned_cols=89  Identities=17%  Similarity=0.162  Sum_probs=67.6

Q ss_pred             CCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCc-EEEccCCcceecccCCcCCCCCCcE
Q 006559          113 WPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLL-TLRLEDNRFTGTLYSVNSSSRSILD  191 (640)
Q Consensus       113 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~-~L~L~~N~l~g~~~~~~~~~~~L~~  191 (640)
                      +++|+.|+|++|+++..-+..|.++++|+.|+|.+| ++ .|+...|.++++|+ .|+|.+ +++..-+..|..+.+|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            667888888888887655667888888888888887 55 56767788888888 888877 676666677888888888


Q ss_pred             EEcccCcCcccCC
Q 006559          192 FNVSNNQLSGQIP  204 (640)
Q Consensus       192 l~ls~N~l~g~ip  204 (640)
                      +++++|+++..-+
T Consensus       302 l~l~~n~i~~I~~  314 (329)
T 3sb4_A          302 VLATGDKITTLGD  314 (329)
T ss_dssp             EEECSSCCCEECT
T ss_pred             EEeCCCccCccch
Confidence            8888888774433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.53  E-value=5.6e-09  Score=116.54  Aligned_cols=89  Identities=17%  Similarity=0.053  Sum_probs=40.0

Q ss_pred             CCCCcEEEcccc--cccccCCccCC-CCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceec-ccCCcCCCCC
Q 006559          113 WPHLKHLYLSHN--RFTGTFPSGVS-SLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGT-LYSVNSSSRS  188 (640)
Q Consensus       113 l~~L~~L~Ls~N--~l~g~~p~~~~-~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~-~~~~~~~~~~  188 (640)
                      +++|++|+|+++  .+++..+..+. .+++|+.|+|++|++++......+..+++|++|+|++|.|++. ++.....+++
T Consensus       435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~  514 (592)
T 3ogk_B          435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS  514 (592)
T ss_dssp             CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSS
T ss_pred             CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCc
Confidence            444555555422  23333222222 2455555555555554311113334555555555555555433 2222233455


Q ss_pred             CcEEEcccCcCcc
Q 006559          189 ILDFNVSNNQLSG  201 (640)
Q Consensus       189 L~~l~ls~N~l~g  201 (640)
                      |+.|+|++|++++
T Consensus       515 L~~L~ls~n~it~  527 (592)
T 3ogk_B          515 LRYLWVQGYRASM  527 (592)
T ss_dssp             CCEEEEESCBCCT
T ss_pred             cCeeECcCCcCCH
Confidence            5555555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.43  E-value=8.9e-08  Score=94.64  Aligned_cols=80  Identities=28%  Similarity=0.391  Sum_probs=59.8

Q ss_pred             CCCCCCcEEEcccccccc--cCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCC--CCcEEEccCCcceecccC-----
Q 006559          111 SSWPHLKHLYLSHNRFTG--TFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLP--NLLTLRLEDNRFTGTLYS-----  181 (640)
Q Consensus       111 ~~l~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~--~L~~L~L~~N~l~g~~~~-----  181 (640)
                      .++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.   ..+..+.  +|+.|+|++|.+++.+|.     
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~---~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE---RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG---GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc---hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            357788888999988887  5566777888999999999998864   2334444  889999999998886653     


Q ss_pred             --CcCCCCCCcEEE
Q 006559          182 --VNSSSRSILDFN  193 (640)
Q Consensus       182 --~~~~~~~L~~l~  193 (640)
                        .+..+++|+.||
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence              245577777764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.40  E-value=2.1e-08  Score=94.18  Aligned_cols=115  Identities=14%  Similarity=0.213  Sum_probs=84.3

Q ss_pred             hhccCCCCCCEEeCCCC-cCCCCC-----CCCCCCCCCcEEEccccccccc----CCccCCCCCCCCEEEcccCCCCCC-
Q 006559           85 EVLSRLTQLRLLSLKNN-LLSSSN-----LNLSSWPHLKHLYLSHNRFTGT----FPSGVSSLRHLRRVDLSHNAYEGE-  153 (640)
Q Consensus        85 ~~l~~l~~L~~L~Ls~N-~l~~~~-----~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g~-  153 (640)
                      ..+...+.|+.|+|++| .++...     ..+...++|++|+|++|.|...    +...+...++|++|+|++|.+... 
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            45677889999999998 886531     1355678899999999998642    334455667899999999998742 


Q ss_pred             ---CCchhcCCCCCCcEEEc--cCCcceec----ccCCcCCCCCCcEEEcccCcCc
Q 006559          154 ---IPMTELTRLPNLLTLRL--EDNRFTGT----LYSVNSSSRSILDFNVSNNQLS  200 (640)
Q Consensus       154 ---~p~~~~~~l~~L~~L~L--~~N~l~g~----~~~~~~~~~~L~~l~ls~N~l~  200 (640)
                         +. ..+...++|++|+|  ++|.|+..    +...+...++|+.|+|++|.+.
T Consensus       110 ~~~l~-~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILALV-EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHH-HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHH-HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               22 34566788999999  88998754    3334455678999999999875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.39  E-value=8e-07  Score=91.34  Aligned_cols=102  Identities=13%  Similarity=0.052  Sum_probs=91.5

Q ss_pred             CCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCC-EEEcccCCCCCCCCchhcCCCCCCcE
Q 006559           90 LTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLR-RVDLSHNAYEGEIPMTELTRLPNLLT  167 (640)
Q Consensus        90 l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~-~L~Ls~N~l~g~~p~~~~~~l~~L~~  167 (640)
                      +++|+.|+|++|.++..+. .|.++++|+.|+|++| +...-+..|.++++|+ .|+|.+ +++ .|+...|.++++|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCE
Confidence            7899999999999988766 6999999999999998 7766677899999999 999988 676 577788999999999


Q ss_pred             EEccCCcceecccCCcCCCCCCcEEEc
Q 006559          168 LRLEDNRFTGTLYSVNSSSRSILDFNV  194 (640)
Q Consensus       168 L~L~~N~l~g~~~~~~~~~~~L~~l~l  194 (640)
                      |+|++|+++...+..|.++++|+.++.
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEeCCCccCccchhhhcCCcchhhhcc
Confidence            999999999888889999999998864

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.35  E-value=2.5e-06  Score=86.66  Aligned_cols=135  Identities=19%  Similarity=0.174  Sum_probs=89.1

Q ss_pred             ccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhccCCC---cccceeEEEE-cCCeEEEEEeccCCCCH
Q 006559          339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHS---NIVSIRAYCN-GKDELFLVYDYLPHGSL  414 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~---niv~l~~~~~-~~~~~~lV~Ey~~~gsL  414 (640)
                      +.++.|....||+.    +..+++|+-........+..|.++++.+.+.   .+.+.+.++. ..+..++||||+++..+
T Consensus        25 ~~l~~G~~n~v~~v----g~~~VlR~~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~~l  100 (306)
T 3tdw_A           25 ESLGEGFRNYAILV----NGDWVFRFPKSQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQIL  100 (306)
T ss_dssp             EEEEECSSEEEEEE----TTTEEEEEESSHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSEEC
T ss_pred             eecCCCcceeEEEE----CCEEEEEecCCchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCeEC
Confidence            34778888899987    5667888754433445678899999888653   2456666664 44568899999999887


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcC-------------------------------------------
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY-------------------------------------------  451 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-------------------------------------------  451 (640)
                      .+....       .++...+..++.++++.|..||..                                           
T Consensus       101 ~~~~~~-------~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~  173 (306)
T 3tdw_A          101 GEDGMA-------VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLT  173 (306)
T ss_dssp             HHHHHT-------TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHH
T ss_pred             chhhhh-------hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence            653211       122333334444444444444421                                           


Q ss_pred             --------------CCCCceecCCCCCCeEECC---CCC-eEEccCCcccc
Q 006559          452 --------------NKAHLFHGHLSSSNIVVDQ---LGN-ACISDIGVHQL  484 (640)
Q Consensus       452 --------------~~~~ivHrdlk~~NILl~~---~~~-~kl~DfGl~~~  484 (640)
                                    ..+.++|+|+++.|||++.   ++. +.|.||+.+..
T Consensus       174 ~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          174 LRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI  224 (306)
T ss_dssp             HHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred             HHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence                          2345799999999999987   455 47999987754

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.19  E-value=6.7e-06  Score=81.71  Aligned_cols=133  Identities=17%  Similarity=0.206  Sum_probs=89.9

Q ss_pred             ccccCcc-eEEEEEeC-CCcEEEEEEeccccchHHHHHHHHHHhccC-CCcccceeEEEEcCCeEEEEEeccCCCCHHHh
Q 006559          341 LGKGCVG-ATYKVVLD-GGDVVVVKRIRERKKKREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELFLVYDYLPHGSLHSL  417 (640)
Q Consensus       341 iG~G~fg-~Vy~~~~~-~~~~vavK~l~~~~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~~  417 (640)
                      +..|..| .||+.... ++..+++|.-... ...++..|.+.|+.+. +--+.++++++...+..|+|||++++.++.+.
T Consensus        32 ~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~-~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~~~~  110 (272)
T 4gkh_A           32 DNVGQSGATIYRLYGKPNAPELFLKHGKGS-VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTAFQV  110 (272)
T ss_dssp             EECSSSSCEEEEEECCTTCCCEEEEEEETH-HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEHHHH
T ss_pred             ccCCCcCCeEEEEEecCCCeEEEEEECCCC-CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCcccccc
Confidence            4556555 58987754 4567888876543 3456777888777664 22356788898888999999999999887665


Q ss_pred             hccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcC----------------------------------------------
Q 006559          418 LHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY----------------------------------------------  451 (640)
Q Consensus       418 l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~----------------------------------------------  451 (640)
                      .....         .....++.+++..|.-||..                                              
T Consensus       111 ~~~~~---------~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (272)
T 4gkh_A          111 LEEYP---------DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWK  181 (272)
T ss_dssp             HHHCG---------GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHH
T ss_pred             ccCCH---------HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHH
Confidence            43211         11223444555555555531                                              


Q ss_pred             ---------CCCCceecCCCCCCeEECCCCCeEEccCCccc
Q 006559          452 ---------NKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ  483 (640)
Q Consensus       452 ---------~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~  483 (640)
                               ..+-++|+|+.+.|||++.++.+-|.||+.+.
T Consensus       182 ~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~  222 (272)
T 4gkh_A          182 EMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG  222 (272)
T ss_dssp             HHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             HHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence                     01237999999999999987777799998864

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.19  E-value=1e-07  Score=106.20  Aligned_cols=109  Identities=14%  Similarity=0.159  Sum_probs=48.3

Q ss_pred             CCCCCEEeCCCCcCCCCCC-CCC-CCCCCcEEEcc--c----cccccc-----CCccCCCCCCCCEEEcccCCCCCCCCc
Q 006559           90 LTQLRLLSLKNNLLSSSNL-NLS-SWPHLKHLYLS--H----NRFTGT-----FPSGVSSLRHLRRVDLSHNAYEGEIPM  156 (640)
Q Consensus        90 l~~L~~L~Ls~N~l~~~~~-~~~-~l~~L~~L~Ls--~----N~l~g~-----~p~~~~~l~~L~~L~Ls~N~l~g~~p~  156 (640)
                      +++|+.|+++.|.+++... .+. .+++|+.|+|+  +    |.+++.     ++..+.++++|+.|+|++ .+++..+ 
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~-  448 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF-  448 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH-
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH-
Confidence            5556666555555544221 121 35555666655  2    333311     111133445555555544 3332222 


Q ss_pred             hhcCC-CCCCcEEEccCCcceecccCCc-CCCCCCcEEEcccCcCc
Q 006559          157 TELTR-LPNLLTLRLEDNRFTGTLYSVN-SSSRSILDFNVSNNQLS  200 (640)
Q Consensus       157 ~~~~~-l~~L~~L~L~~N~l~g~~~~~~-~~~~~L~~l~ls~N~l~  200 (640)
                      ..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.++
T Consensus       449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~  494 (594)
T 2p1m_B          449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG  494 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred             HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence            12222 4555555555555544332222 33455555555555553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.08  E-value=9.2e-07  Score=98.49  Aligned_cols=126  Identities=10%  Similarity=-0.033  Sum_probs=83.9

Q ss_pred             CcEEEEEeCCCCCCCCc-----hhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEccccccc---ccCCccCCCCCC
Q 006559           68 HRVIKLVLEDLDLTGPA-----EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFT---GTFPSGVSSLRH  139 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~---g~~p~~~~~l~~  139 (640)
                      ..+..|+|.++.+++..     ..+.++++|+.|+|++|.+.+.+..+..+++|+.|+++++...   +..+..+..+++
T Consensus       192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~  271 (592)
T 3ogk_B          192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK  271 (592)
T ss_dssp             CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred             CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence            36788899888887432     3456789999999999888775545667777888888753332   233445666777


Q ss_pred             CCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceeccc-CCcCCCCCCcEEEcc
Q 006559          140 LRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLY-SVNSSSRSILDFNVS  195 (640)
Q Consensus       140 L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~-~~~~~~~~L~~l~ls  195 (640)
                      |+.|+++++.. +.+| ..+..+++|++|+|++|.+++... ..+..+++|+.|+++
T Consensus       272 L~~L~l~~~~~-~~l~-~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          272 LCRLGLSYMGP-NEMP-ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             CCEEEETTCCT-TTGG-GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             ccccCccccch-hHHH-HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            77777776533 2455 456667777777777777665433 334556777777777

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=98.02  E-value=7.1e-06  Score=85.14  Aligned_cols=77  Identities=13%  Similarity=0.092  Sum_probs=52.8

Q ss_pred             ccc-cccCcceEEEEEeC-------CCcEEEEEEecccc-----chHHHHHHHHHHhccCC---CcccceeEEEEcC---
Q 006559          339 ELL-GKGCVGATYKVVLD-------GGDVVVVKRIRERK-----KKREVDEWLRVIGGLRH---SNIVSIRAYCNGK---  399 (640)
Q Consensus       339 ~~i-G~G~fg~Vy~~~~~-------~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H---~niv~l~~~~~~~---  399 (640)
                      +.| +.|....+|+....       ++..+++|......     ....+..|.++++.+..   -.+.++++++.+.   
T Consensus        26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~  105 (357)
T 3ats_A           26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL  105 (357)
T ss_dssp             EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred             EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence            346 77888999988764       25678888765432     12456777777776643   2466778877654   


Q ss_pred             CeEEEEEeccCCCCHH
Q 006559          400 DELFLVYDYLPHGSLH  415 (640)
Q Consensus       400 ~~~~lV~Ey~~~gsL~  415 (640)
                      +..|+||||+++..+.
T Consensus       106 g~~~~v~e~l~G~~l~  121 (357)
T 3ats_A          106 GTPFFLMDYVEGVVPP  121 (357)
T ss_dssp             SSCEEEEECCCCBCCC
T ss_pred             CCceEEEEecCCCChh
Confidence            3578999999986654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.01  E-value=4.5e-07  Score=84.96  Aligned_cols=108  Identities=18%  Similarity=0.208  Sum_probs=83.8

Q ss_pred             CcEEEEEeCCC-CCCCC-----chhccCCCCCCEEeCCCCcCCCCCC-----CCCCCCCCcEEEccccccccc----CCc
Q 006559           68 HRVIKLVLEDL-DLTGP-----AEVLSRLTQLRLLSLKNNLLSSSNL-----NLSSWPHLKHLYLSHNRFTGT----FPS  132 (640)
Q Consensus        68 ~~v~~l~l~~~-~l~g~-----~~~l~~l~~L~~L~Ls~N~l~~~~~-----~~~~l~~L~~L~Ls~N~l~g~----~p~  132 (640)
                      ..++.|+|+++ .+...     ...+...++|+.|+|++|.|+....     .+...+.|++|+|++|.|+..    +..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            46889999998 77642     2567778999999999999975321     244567899999999999753    456


Q ss_pred             cCCCCCCCCEEEc--ccCCCCCC----CCchhcCCCCCCcEEEccCCcce
Q 006559          133 GVSSLRHLRRVDL--SHNAYEGE----IPMTELTRLPNLLTLRLEDNRFT  176 (640)
Q Consensus       133 ~~~~l~~L~~L~L--s~N~l~g~----~p~~~~~~l~~L~~L~L~~N~l~  176 (640)
                      .+...++|+.|+|  ++|.+...    +. ..+...++|+.|+|++|.+.
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~-~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNVEMEIA-NMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHH-HHHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCceEEEecCCCCCCCHHHHHHHH-HHHHhCCCcCEEeccCCCCC
Confidence            6777889999999  88999742    11 23455689999999999986

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.96  E-value=1.3e-06  Score=90.80  Aligned_cols=132  Identities=20%  Similarity=0.229  Sum_probs=81.0

Q ss_pred             cEEEEEeCCCCCC----------CCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCC--C
Q 006559           69 RVIKLVLEDLDLT----------GPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVS--S  136 (640)
Q Consensus        69 ~v~~l~l~~~~l~----------g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~  136 (640)
                      ++..|.+.++...          +....+..+++|+.|+|++|.-...+ .+ .+++|+.|+|..|.++......+.  .
T Consensus       140 ~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~-~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~  217 (362)
T 2ra8_A          140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIG-KK-PRPNLKSLEIISGGLPDSVVEDILGSD  217 (362)
T ss_dssp             TCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCC-SC-BCTTCSEEEEECSBCCHHHHHHHHHSB
T ss_pred             hhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceec-cc-cCCCCcEEEEecCCCChHHHHHHHHcc
Confidence            5666666554321          12255677889999999887311112 23 377888888888877543333333  6


Q ss_pred             CCCCCEEEccc--CCCCCCCCc----hhc--CCCCCCcEEEccCCcceecccCCc---CCCCCCcEEEcccCcCccc
Q 006559          137 LRHLRRVDLSH--NAYEGEIPM----TEL--TRLPNLLTLRLEDNRFTGTLYSVN---SSSRSILDFNVSNNQLSGQ  202 (640)
Q Consensus       137 l~~L~~L~Ls~--N~l~g~~p~----~~~--~~l~~L~~L~L~~N~l~g~~~~~~---~~~~~L~~l~ls~N~l~g~  202 (640)
                      +++|+.|+|+.  |...|....    ..+  ..+|+|++|+|.+|.+++..+..+   ..+++|+.|+|+.|.|++.
T Consensus       218 lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~  294 (362)
T 2ra8_A          218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE  294 (362)
T ss_dssp             CTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred             CCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence            88888888853  332222100    112  347888888888888875432221   2467888888888888763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.93  E-value=6.8e-07  Score=99.56  Aligned_cols=125  Identities=18%  Similarity=0.270  Sum_probs=67.7

Q ss_pred             cEEEEEeCCCCCCCCc-hhcc-CCCCCCEEeCCCC-cCCCC-CCC-CCCCCCCcEEEcccccccccCCccC----CCCCC
Q 006559           69 RVIKLVLEDLDLTGPA-EVLS-RLTQLRLLSLKNN-LLSSS-NLN-LSSWPHLKHLYLSHNRFTGTFPSGV----SSLRH  139 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~-~~l~-~l~~L~~L~Ls~N-~l~~~-~~~-~~~l~~L~~L~Ls~N~l~g~~p~~~----~~l~~  139 (640)
                      ++..|+|+++.+++.. ..+. .+++|+.|+|++| .++.. .+. +.++++|++|+|++|.+++..+..+    ..+++
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~  185 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS  185 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred             CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence            4666666666655432 2232 4667777777666 33321 111 2356677777777777665433322    25556


Q ss_pred             CCEEEcccCCCCCCCCchh----cCCCCCCcEEEccCC-cceecccCCcCCCCCCcEEEccc
Q 006559          140 LRRVDLSHNAYEGEIPMTE----LTRLPNLLTLRLEDN-RFTGTLYSVNSSSRSILDFNVSN  196 (640)
Q Consensus       140 L~~L~Ls~N~l~g~~p~~~----~~~l~~L~~L~L~~N-~l~g~~~~~~~~~~~L~~l~ls~  196 (640)
                      |+.|+|++|.  +.++...    +.++++|++|+|++| .+++ ++..+..+++|+.|+++.
T Consensus       186 L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~  244 (594)
T 2p1m_B          186 LVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGG  244 (594)
T ss_dssp             CCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSB
T ss_pred             CcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEccccc
Confidence            7777777665  2222121    233567777777766 3333 555555566666666443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.92  E-value=4.7e-06  Score=86.49  Aligned_cols=37  Identities=11%  Similarity=0.196  Sum_probs=16.9

Q ss_pred             CCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCC
Q 006559          112 SWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYE  151 (640)
Q Consensus       112 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~  151 (640)
                      .+|+|+.|+|++|.-. .+|. + .+++|+.|+|..+.++
T Consensus       170 ~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~  206 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLP  206 (362)
T ss_dssp             TCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCC
T ss_pred             cCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCC
Confidence            3455555555554210 1222 2 2455555555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.83  E-value=6.5e-05  Score=79.16  Aligned_cols=124  Identities=14%  Similarity=0.174  Sum_probs=79.9

Q ss_pred             cEEEEEeCCCCCCC-CchhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcc
Q 006559           69 RVIKLVLEDLDLTG-PAEVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLS  146 (640)
Q Consensus        69 ~v~~l~l~~~~l~g-~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  146 (640)
                      .+..+.|+.+ +.- ....|.++++|+.++|..| +..... .|.+ .+|+.++| .|+++..-+..|.++++|+.++|.
T Consensus       204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~  279 (401)
T 4fdw_A          204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTY  279 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEE
T ss_pred             ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeC
Confidence            3556666543 322 2356788888999998875 333222 3444 57777777 445555556677777888888877


Q ss_pred             cCCCC----CCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccC
Q 006559          147 HNAYE----GEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNN  197 (640)
Q Consensus       147 ~N~l~----g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N  197 (640)
                      +|.+.    ..|+...|.++++|+.++|. |.++..-...|.++.+|+.++|..|
T Consensus       280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          280 GSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             SSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred             CccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence            77664    12555667777778887777 4466555666777777777777544

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.79  E-value=7e-05  Score=76.84  Aligned_cols=141  Identities=18%  Similarity=0.263  Sum_probs=77.6

Q ss_pred             cccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhcc-----CCCccccee-E--EEEcCCeEEEEEeccCC
Q 006559          340 LLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGL-----RHSNIVSIR-A--YCNGKDELFLVYDYLPH  411 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l-----~H~niv~l~-~--~~~~~~~~~lV~Ey~~~  411 (640)
                      .|+.|..+.||++...+|. +++|+....  ...+..|.++++.|     ..|.++... |  +....+..++||||+++
T Consensus        39 ~l~gG~~n~~~~v~~~~~~-~vlk~~~~~--~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~i~G  115 (346)
T 2q83_A           39 VIQGNQMALVWKVHTDSGA-VCLKRIHRP--EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDWIEG  115 (346)
T ss_dssp             ECC----CEEEEEEETTEE-EEEEEECSC--HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEECCCC
T ss_pred             eccccccCcEEEEEeCCCC-EEEEecCCC--HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEeecC
Confidence            4666778899999876654 888988753  22333344444333     234444311 1  12235678999999998


Q ss_pred             CCHH--------------Hhhcc----CCCCC-----CCCcCHHHHH-------------------------------HH
Q 006559          412 GSLH--------------SLLHG----SRGPG-----RMPVDWNKRL-------------------------------KL  437 (640)
Q Consensus       412 gsL~--------------~~l~~----~~~~~-----~~~l~~~~~~-------------------------------~i  437 (640)
                      ..+.              ..+|.    ...+.     ...-.|....                               .+
T Consensus       116 ~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (346)
T 2q83_A          116 RPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEIDGF  195 (346)
T ss_dssp             BCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence            6542              01111    10010     0012343211                               01


Q ss_pred             HHHHHHHHHHhhc----------CCCCCceecCCCCCCeEECCCCCeEEccCCccc
Q 006559          438 ASDSAKGLAFLHG----------YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ  483 (640)
Q Consensus       438 ~~~ia~gL~yLH~----------~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~  483 (640)
                      ...+.+++++|+.          .....++|+|+.+.|||++.++.+.|+||+.+.
T Consensus       196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          196 IEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             HHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            1223445666653          024569999999999999888889999998764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.79  E-value=0.00012  Score=77.17  Aligned_cols=111  Identities=9%  Similarity=0.145  Sum_probs=74.2

Q ss_pred             hhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCC
Q 006559           85 EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPN  164 (640)
Q Consensus        85 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~  164 (640)
                      ..|.++++|+.++|++|.+...+...-.+++|+.+.|..| +...-...|.++++|+.++|..| ++ .|+...|.+ .+
T Consensus       174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~  249 (401)
T 4fdw_A          174 DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SG  249 (401)
T ss_dssp             STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CC
T ss_pred             HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CC
Confidence            4567777777777777777665543222567777777643 55455566777777777777765 43 455555655 67


Q ss_pred             CcEEEccCCcceecccCCcCCCCCCcEEEcccCcCc
Q 006559          165 LLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLS  200 (640)
Q Consensus       165 L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~  200 (640)
                      |+.+.| .|.++..-...|..+.+|+.+++.+|.+.
T Consensus       250 L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~  284 (401)
T 4fdw_A          250 ITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFN  284 (401)
T ss_dssp             CSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred             ccEEEe-CCCccEEChhHhhCCCCCCEEEeCCcccc
Confidence            777777 45566555667777888888888877765

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.57  E-value=0.00027  Score=74.36  Aligned_cols=72  Identities=8%  Similarity=0.066  Sum_probs=45.7

Q ss_pred             ccccccCcceEEEEEeC-CCcEEEEEEecccc---------chHHHHHHHHHHhccCC--Cc-ccceeEEEEcCCeEEEE
Q 006559          339 ELLGKGCVGATYKVVLD-GGDVVVVKRIRERK---------KKREVDEWLRVIGGLRH--SN-IVSIRAYCNGKDELFLV  405 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~---------~~~~~~~e~~~l~~l~H--~n-iv~l~~~~~~~~~~~lV  405 (640)
                      +.||.|.++.||++... ++..++||......         ....+..|.++++.+..  +. +.+++.+  +.+..++|
T Consensus        36 ~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~lv  113 (397)
T 2olc_A           36 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVTV  113 (397)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEEE
T ss_pred             EECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEEE
Confidence            46899999999999754 46789999764321         12334567777766532  33 3455544  34456899


Q ss_pred             EeccCCC
Q 006559          406 YDYLPHG  412 (640)
Q Consensus       406 ~Ey~~~g  412 (640)
                      |||+++.
T Consensus       114 mE~l~g~  120 (397)
T 2olc_A          114 MEDLSHL  120 (397)
T ss_dssp             ECCCTTS
T ss_pred             EEeCCCc
Confidence            9999763

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.53  E-value=0.00045  Score=69.94  Aligned_cols=139  Identities=17%  Similarity=0.168  Sum_probs=89.0

Q ss_pred             ccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhccC---CCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLR---HSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~---H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      +.|+.|.+..+|+.... +..+++|..... ....+..|.+.|+.|.   ...+.+.++++...+..++||||+++..+.
T Consensus        42 ~~l~gG~~n~~y~v~~~-~~~~vlK~~~~~-~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~~~~  119 (312)
T 3jr1_A           42 EKLYSGEMNEIWLINDE-VQTVFVKINERS-YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKSKNK  119 (312)
T ss_dssp             EEECCSSSSEEEEEESS-SCEEEEEEEEGG-GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCCCCC
T ss_pred             EEeCCccceeeeEEEEC-CCeEEEEeCCcc-cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCCCCC
Confidence            45788999999998864 567788876543 3456777877777663   356778888888788999999999987642


Q ss_pred             H-----------hhccCCC-C----------C------CCCcCHHHHH---HHHH----------------HHHHH-HHH
Q 006559          416 S-----------LLHGSRG-P----------G------RMPVDWNKRL---KLAS----------------DSAKG-LAF  447 (640)
Q Consensus       416 ~-----------~l~~~~~-~----------~------~~~l~~~~~~---~i~~----------------~ia~g-L~y  447 (640)
                      .           .||.... +          +      .-.-+|....   ++..                .+... ...
T Consensus       120 ~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~l~~~  199 (312)
T 3jr1_A          120 QSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIVADT  199 (312)
T ss_dssp             TTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            1           2332211 0          0      0012465322   1111                11111 223


Q ss_pred             hhc-CCCCCceecCCCCCCeEECCCCCeEEccCC
Q 006559          448 LHG-YNKAHLFHGHLSSSNIVVDQLGNACISDIG  480 (640)
Q Consensus       448 LH~-~~~~~ivHrdlk~~NILl~~~~~~kl~DfG  480 (640)
                      |.. ..++.+||+|+.+.|++++.++ +.|.|+.
T Consensus       200 L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~  232 (312)
T 3jr1_A          200 LSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA  232 (312)
T ss_dssp             HTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred             hccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence            421 2356799999999999999887 8899973

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.31  E-value=0.0014  Score=65.38  Aligned_cols=72  Identities=14%  Similarity=0.122  Sum_probs=51.5

Q ss_pred             ccccccCcceEEEEEeCCCcEEEEEEeccc--cchHHHHHHHHHHhccCCC---cccceeEEEEcCCeEEEEEeccCCCC
Q 006559          339 ELLGKGCVGATYKVVLDGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHS---NIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~---niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      +.+|.|..+.||+.++.+|+.|+||+....  .....+..|.+.|+.|.-.   -+.+.+++.    .-++||||++.+.
T Consensus        21 ~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~l~~~~   96 (288)
T 3f7w_A           21 AERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVDERP   96 (288)
T ss_dssp             EEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCCCCC
T ss_pred             EecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEeecccC
Confidence            458999999999999999999999987544  2335678888887776422   234444432    3478999998765


Q ss_pred             H
Q 006559          414 L  414 (640)
Q Consensus       414 L  414 (640)
                      .
T Consensus        97 ~   97 (288)
T 3f7w_A           97 P   97 (288)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=97.18  E-value=0.0014  Score=69.33  Aligned_cols=76  Identities=13%  Similarity=0.077  Sum_probs=45.9

Q ss_pred             CCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc-----c--ccccccCCccccCCCCccccCCCCCccchHHHHHH
Q 006559          453 KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF-----F--INDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVV  525 (640)
Q Consensus       453 ~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~-----~--~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvv  525 (640)
                      .+.++|+|+++.|||++.++ ++|.||+.+..-...+     .  ....|.+|+.....    ....-....++.+....
T Consensus       231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~Dla~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  305 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFDIGAYLGNLILAFFAQDGHATQ----ENDRKEYKQWILRTIEQ  305 (420)
T ss_dssp             CCEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHHHHHHHHHHHHHHHHGGGGCCS----SCCSHHHHHHHHHHHHH
T ss_pred             CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHHHHHHHHHHHHHHHhccccccc----ccchHHHHHHHHHHHHH
Confidence            45699999999999999876 9999999876543210     0  01234555422100    00011123455678888


Q ss_pred             HHHHHhCC
Q 006559          526 LLEILTGK  533 (640)
Q Consensus       526 l~el~tg~  533 (640)
                      +|+.++++
T Consensus       306 ~~~~y~~~  313 (420)
T 2pyw_A          306 TWNLFNKR  313 (420)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88877754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.09  E-value=0.00079  Score=58.61  Aligned_cols=56  Identities=21%  Similarity=0.299  Sum_probs=29.5

Q ss_pred             EEEccccccc-ccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcce
Q 006559          118 HLYLSHNRFT-GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT  176 (640)
Q Consensus       118 ~L~Ls~N~l~-g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~  176 (640)
                      .++.+++.|+ ..+|..+.  ++|+.|+|++|+|+ .+|...|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence            4555555554 23443221  24566666666665 355455555666666666666543

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=97.06  E-value=0.0042  Score=63.06  Aligned_cols=142  Identities=15%  Similarity=0.113  Sum_probs=78.4

Q ss_pred             cccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCc--ccceeEE-----EEcCCeEEEEEeccCC
Q 006559          340 LLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSN--IVSIRAY-----CNGKDELFLVYDYLPH  411 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~n--iv~l~~~-----~~~~~~~~lV~Ey~~~  411 (640)
                      .++ |....||+....+|..+++|..... .....+..|..++..+....  +.+++..     ....+..++||||+++
T Consensus        33 ~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i~G  111 (328)
T 1zyl_A           33 PLN-SYENRVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGG  111 (328)
T ss_dssp             EEC-CSSSEEEEECCTTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCC
T ss_pred             eec-CcccceEEEEcCCCCEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEecCC
Confidence            355 7778899988777778899998743 33455666776666553222  3334332     1224567899999987


Q ss_pred             CCHH-----Hh---------hcc----CCCCCCCCcCHHHH----------------------HHHHHHHHHHHHHhh-c
Q 006559          412 GSLH-----SL---------LHG----SRGPGRMPVDWNKR----------------------LKLASDSAKGLAFLH-G  450 (640)
Q Consensus       412 gsL~-----~~---------l~~----~~~~~~~~l~~~~~----------------------~~i~~~ia~gL~yLH-~  450 (640)
                      ..+.     .+         +|.    .....+...++...                      ...+..+...++-+- .
T Consensus       112 ~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  191 (328)
T 1zyl_A          112 RQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHWRE  191 (328)
T ss_dssp             EECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5431     10         111    10001112232211                      001111112222111 1


Q ss_pred             CCCCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       451 ~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      .....++|+|+++.|||++ + .+.|.||+.+..
T Consensus       192 ~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~  223 (328)
T 1zyl_A          192 DFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN  223 (328)
T ss_dssp             CSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred             cCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence            1234589999999999999 4 899999987643

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=97.06  E-value=0.0023  Score=64.81  Aligned_cols=144  Identities=10%  Similarity=0.060  Sum_probs=77.3

Q ss_pred             ccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhccCCCc--ccceeEE------EEcCCeEEEEEeccC
Q 006559          339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSN--IVSIRAY------CNGKDELFLVYDYLP  410 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~n--iv~l~~~------~~~~~~~~lV~Ey~~  410 (640)
                      +.|+.|....+|+....+| .+++|..........+..|.+++..+....  +.+++..      ....+..+++|||++
T Consensus        28 ~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g~~~~l~~~l~  106 (322)
T 2ppq_A           28 KGIAEGVENSNFLLHTTKD-PLILTLYEKRVEKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAALISFLE  106 (322)
T ss_dssp             EEECC---EEEEEEEESSC-CEEEEEECC---CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEEEEECCC
T ss_pred             eccCCCcccceEEEEeCCc-cEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECCEEEEEEEeCC
Confidence            3467788889999987766 577888765323344555666655543212  2222211      112356799999998


Q ss_pred             CCCHHH--------------hhccC----CCCC---CCCcCHHHHHHH------------HHHHHHHHHHhhcC----CC
Q 006559          411 HGSLHS--------------LLHGS----RGPG---RMPVDWNKRLKL------------ASDSAKGLAFLHGY----NK  453 (640)
Q Consensus       411 ~gsL~~--------------~l~~~----~~~~---~~~l~~~~~~~i------------~~~ia~gL~yLH~~----~~  453 (640)
                      +..+..              .+|..    ..+.   .....|.....-            ...+...+++++..    .+
T Consensus       107 G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~  186 (322)
T 2ppq_A          107 GMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHWPKDLP  186 (322)
T ss_dssp             CBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHHHHHHHCCCSSC
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCcccCC
Confidence            764311              11211    1010   001234331110            11234445555421    23


Q ss_pred             CCceecCCCCCCeEECCCCCeEEccCCccc
Q 006559          454 AHLFHGHLSSSNIVVDQLGNACISDIGVHQ  483 (640)
Q Consensus       454 ~~ivHrdlk~~NILl~~~~~~kl~DfGl~~  483 (640)
                      ..++|+|+.+.|||++.+..+.|.||+.+.
T Consensus       187 ~~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          187 AGVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cccCCCCCCccCEEEeCCceEEEecchhcc
Confidence            468999999999999987666899998764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.00  E-value=0.00016  Score=66.24  Aligned_cols=81  Identities=12%  Similarity=0.183  Sum_probs=41.7

Q ss_pred             CCCEEeCCCCcCCCCC-CCCCCCCCCcEEEccccc-ccccCCccCCCC----CCCCEEEcccCC-CCCCCCchhcCCCCC
Q 006559           92 QLRLLSLKNNLLSSSN-LNLSSWPHLKHLYLSHNR-FTGTFPSGVSSL----RHLRRVDLSHNA-YEGEIPMTELTRLPN  164 (640)
Q Consensus        92 ~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~-l~g~~p~~~~~l----~~L~~L~Ls~N~-l~g~~p~~~~~~l~~  164 (640)
                      +|+.|||+++.++... ..+..+++|++|+|+++. ++..--..+..+    ++|+.|+|+++. ++.. -...+.++++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHHhcCCC
Confidence            4667777776665432 235566666666666664 443221223332    256666666653 4421 1123445566


Q ss_pred             CcEEEccCC
Q 006559          165 LLTLRLEDN  173 (640)
Q Consensus       165 L~~L~L~~N  173 (640)
                      |+.|+|+++
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            666666655

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.87  E-value=0.00012  Score=66.99  Aligned_cols=81  Identities=14%  Similarity=0.104  Sum_probs=45.5

Q ss_pred             cEEEEEeCCCCCCCC-chhccCCCCCCEEeCCCCc-CCCCCC-CCCCC----CCCcEEEccccc-ccccCCccCCCCCCC
Q 006559           69 RVIKLVLEDLDLTGP-AEVLSRLTQLRLLSLKNNL-LSSSNL-NLSSW----PHLKHLYLSHNR-FTGTFPSGVSSLRHL  140 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~-~~~l~~l~~L~~L~Ls~N~-l~~~~~-~~~~l----~~L~~L~Ls~N~-l~g~~p~~~~~l~~L  140 (640)
                      ++..|||++..++.. ...+..+++|+.|+|+++. +++... .+..+    ++|++|+|+++. ++..--..+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            567777776665432 2445667777777777664 443211 23332    357777777753 543222335566777


Q ss_pred             CEEEcccCC
Q 006559          141 RRVDLSHNA  149 (640)
Q Consensus       141 ~~L~Ls~N~  149 (640)
                      +.|+|++..
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            777776654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.77  E-value=0.0024  Score=55.53  Aligned_cols=55  Identities=24%  Similarity=0.240  Sum_probs=39.4

Q ss_pred             EEeCCCCcCC--CCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCC
Q 006559           95 LLSLKNNLLS--SSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYE  151 (640)
Q Consensus        95 ~L~Ls~N~l~--~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~  151 (640)
                      .++.+++.|+  ..|..+  .++|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555566665  443222  235888888888888766667888899999999999886

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.71  E-value=0.0046  Score=64.75  Aligned_cols=111  Identities=14%  Similarity=0.169  Sum_probs=79.2

Q ss_pred             hhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCC
Q 006559           85 EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPN  164 (640)
Q Consensus        85 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~  164 (640)
                      ..|...+.|+.+.+.++...-....+.+++.|+.+.+. +.+...-...|.++.+|+.++|..| ++ .|....|.++.+
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTT
T ss_pred             ceeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCC
Confidence            45777888888888766543333357788888888886 4455444557888888888888754 44 466567888888


Q ss_pred             CcEEEccCCcceecccCCcCCCCCCcEEEcccCcC
Q 006559          165 LLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQL  199 (640)
Q Consensus       165 L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l  199 (640)
                      |+.+.|.++ ++..-...|.++.+|+.+++.+|..
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            888888654 5544456677888888888887754

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=96.69  E-value=0.011  Score=60.11  Aligned_cols=32  Identities=13%  Similarity=0.147  Sum_probs=27.3

Q ss_pred             CCCceecCCCCCCeEECCC----CCeEEccCCcccc
Q 006559          453 KAHLFHGHLSSSNIVVDQL----GNACISDIGVHQL  484 (640)
Q Consensus       453 ~~~ivHrdlk~~NILl~~~----~~~kl~DfGl~~~  484 (640)
                      ...++|+|+.+.|||++.+    +.+.|.||+.+..
T Consensus       182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            4569999999999999874    6789999998754

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=96.69  E-value=0.0038  Score=62.68  Aligned_cols=69  Identities=4%  Similarity=-0.042  Sum_probs=39.7

Q ss_pred             ccccccCcceEEEEEeCCCcEEEEEEeccccc-hHHHHHHHHHHhccCCCcc-cceeEEEEcCCeEEEEEecc-CCCCH
Q 006559          339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKK-KREVDEWLRVIGGLRHSNI-VSIRAYCNGKDELFLVYDYL-PHGSL  414 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~-~~~~~~e~~~l~~l~H~ni-v~l~~~~~~~~~~~lV~Ey~-~~gsL  414 (640)
                      +.|+.|....+|+.     ..+++|....... ......|.+.++.+....+ .++++++  .+.-++|+||+ ++.++
T Consensus        24 ~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~v~e~i~~g~~l   95 (301)
T 3dxq_A           24 LERLGGLTNLVFRA-----GDLCLRIPGKGTEEYINRANEAVAAREAAKAGVSPEVLHVD--PATGVMVTRYIAGAQTM   95 (301)
T ss_dssp             EEEESCSSEEEEEE-----TTEEEEEECC----CCCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCEEEECCTTCEEC
T ss_pred             eEcCCcccccccee-----eeEEEECCCCCccceeCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEEEEeecCCCccC
Confidence            45778888999998     4577887754311 1122345555555433233 3455543  33457899999 55433

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.55  E-value=0.00031  Score=65.58  Aligned_cols=114  Identities=11%  Similarity=0.200  Sum_probs=73.0

Q ss_pred             hccCCCCCCEEeCCCC-cCCCCCC-----CCCCCCCCcEEEccccccccc----CCccCCCCCCCCEEEcccCCCCCC--
Q 006559           86 VLSRLTQLRLLSLKNN-LLSSSNL-----NLSSWPHLKHLYLSHNRFTGT----FPSGVSSLRHLRRVDLSHNAYEGE--  153 (640)
Q Consensus        86 ~l~~l~~L~~L~Ls~N-~l~~~~~-----~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g~--  153 (640)
                      .+.+-+.|+.|+|++| .|.....     .+..-+.|+.|+|++|.|...    +...+..-+.|+.|+|++|.+...  
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3456678999999885 7754211     244556789999999998632    223334557899999999988632  


Q ss_pred             --CCchhcCCCCCCcEEEccCC---ccee----cccCCcCCCCCCcEEEcccCcCc
Q 006559          154 --IPMTELTRLPNLLTLRLEDN---RFTG----TLYSVNSSSRSILDFNVSNNQLS  200 (640)
Q Consensus       154 --~p~~~~~~l~~L~~L~L~~N---~l~g----~~~~~~~~~~~L~~l~ls~N~l~  200 (640)
                        +- ..+..-+.|+.|+|++|   .+..    .+...+..-+.|..|+++.|.+.
T Consensus       116 ~ala-~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          116 ARLL-RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHH-HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHH-HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence              11 23444567999999865   3332    13334445577888888777643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.51  E-value=0.01  Score=62.08  Aligned_cols=84  Identities=11%  Similarity=0.176  Sum_probs=55.5

Q ss_pred             CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCC
Q 006559          109 NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRS  188 (640)
Q Consensus       109 ~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~  188 (640)
                      .|.+++.|+.+.+..+..+ .-...|.++++|+.+.+. +.++ .|+...|.++++|+.++|..| ++..-...|..+.+
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             eeeecccccEEecccccce-ecCcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            4667777888877665432 334467777788888775 3444 466667777788888887654 55444556777777


Q ss_pred             CcEEEccc
Q 006559          189 ILDFNVSN  196 (640)
Q Consensus       189 L~~l~ls~  196 (640)
                      |+.+.+..
T Consensus       336 L~~i~ip~  343 (394)
T 4gt6_A          336 LERIAIPS  343 (394)
T ss_dssp             CCEEEECT
T ss_pred             CCEEEECc
Confidence            87777643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.45  E-value=0.011  Score=61.86  Aligned_cols=84  Identities=12%  Similarity=0.055  Sum_probs=50.7

Q ss_pred             CCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCC
Q 006559          110 LSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSI  189 (640)
Q Consensus       110 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L  189 (640)
                      +..+.+|+.+.+..+ +...-...|.++.+|+.++|.++ ++ .|+...|.++++|+.+.|..| ++..-...|.++.+|
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            445666666666543 44333445667777777777543 44 455556667777777777655 554445566667777


Q ss_pred             cEEEcccC
Q 006559          190 LDFNVSNN  197 (640)
Q Consensus       190 ~~l~ls~N  197 (640)
                      +.+++..|
T Consensus       369 ~~i~lp~~  376 (394)
T 4fs7_A          369 KKVELPKR  376 (394)
T ss_dssp             CEEEEEGG
T ss_pred             CEEEECCC
Confidence            77766543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.26  E-value=0.022  Score=59.00  Aligned_cols=107  Identities=9%  Similarity=0.101  Sum_probs=57.0

Q ss_pred             hccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCC
Q 006559           86 VLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNL  165 (640)
Q Consensus        86 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L  165 (640)
                      .+....+|+.+.+..+.-.-....+..+..|+.+.+..+ ++..-...|.++.+|+.+++..+ +. .++...|..+++|
T Consensus       212 ~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTC
T ss_pred             ccccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccccccc
Confidence            345556666666654422111224555666666666554 33333445556666666666433 33 3444455666666


Q ss_pred             cEEEccCCcceecccCCcCCCCCCcEEEcc
Q 006559          166 LTLRLEDNRFTGTLYSVNSSSRSILDFNVS  195 (640)
Q Consensus       166 ~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls  195 (640)
                      +.+.+.+|.++..-...|.++.+|+.++|.
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcC
Confidence            666666665654445556566666666553

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=96.25  E-value=0.013  Score=62.10  Aligned_cols=70  Identities=10%  Similarity=0.127  Sum_probs=46.0

Q ss_pred             cccccCcceEEEEEeCC--------CcEEEEEEeccccchHHHHHHHHHHhccCCCcc-cceeEEEEcCCeEEEEEeccC
Q 006559          340 LLGKGCVGATYKVVLDG--------GDVVVVKRIRERKKKREVDEWLRVIGGLRHSNI-VSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~~--------~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~ni-v~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      .|+.|....+|++...+        +..+++|+.........+..|.++++.+...++ .++++.+.+    .+||||++
T Consensus        80 ~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~e~l~  155 (429)
T 1nw1_A           80 RIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLEEYIP  155 (429)
T ss_dssp             EECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEECCCC
T ss_pred             EeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCCcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEEEEeC
Confidence            46778888999998763        467888887442221445567777776643344 566766542    38999998


Q ss_pred             CCC
Q 006559          411 HGS  413 (640)
Q Consensus       411 ~gs  413 (640)
                      +..
T Consensus       156 G~~  158 (429)
T 1nw1_A          156 SRP  158 (429)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            633

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=96.07  E-value=0.025  Score=58.58  Aligned_cols=140  Identities=11%  Similarity=0.129  Sum_probs=78.7

Q ss_pred             cccccCcceEEEEEeCC--------CcEEEEEEeccc-cchHHHHHHHHHHhccCCCcc-cceeEEEEcCCeEEEEEecc
Q 006559          340 LLGKGCVGATYKVVLDG--------GDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNI-VSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~~--------~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~ni-v~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .|..|-...+|++...+        +..+++|+.... .......+|.++++.+.-.++ .++++++.+    .+||||+
T Consensus        57 ~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e~i  132 (379)
T 3feg_A           57 PVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQYI  132 (379)
T ss_dssp             EC-----CCEEEEECCTTSCCCSSCCSEEEEEECC---CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEECC
T ss_pred             EcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCccchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEEEe
Confidence            46667778899988653        467888876432 234455678877776643333 556666643    2999999


Q ss_pred             CCCCHHH-----------------hhccCCCC-CCCCc-CHHHHHHHHHHHHH-------------------HHHH----
Q 006559          410 PHGSLHS-----------------LLHGSRGP-GRMPV-DWNKRLKLASDSAK-------------------GLAF----  447 (640)
Q Consensus       410 ~~gsL~~-----------------~l~~~~~~-~~~~l-~~~~~~~i~~~ia~-------------------gL~y----  447 (640)
                      ++..|..                 -||....+ ++.+. -|.++.++..++..                   .++.    
T Consensus       133 ~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~  212 (379)
T 3feg_A          133 PSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKL  212 (379)
T ss_dssp             SEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHHHH
T ss_pred             cCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHHHH
Confidence            8755431                 12222111 11111 24455544433321                   2222    


Q ss_pred             hhc-CCCCCceecCCCCCCeEECCC----CCeEEccCCccc
Q 006559          448 LHG-YNKAHLFHGHLSSSNIVVDQL----GNACISDIGVHQ  483 (640)
Q Consensus       448 LH~-~~~~~ivHrdlk~~NILl~~~----~~~kl~DfGl~~  483 (640)
                      |.. .....++|+|+.+.|||++.+    +.+.++||..+.
T Consensus       213 L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~  253 (379)
T 3feg_A          213 LESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS  253 (379)
T ss_dssp             HHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred             HhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence            221 123458999999999999876    789999997764

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=96.04  E-value=0.0097  Score=61.60  Aligned_cols=70  Identities=10%  Similarity=0.031  Sum_probs=39.9

Q ss_pred             cccccCcceEEEEEeCC---------CcEEEEEEeccccch-HHHHHHHHHHhccCCCcc-cceeEEEEcCCeEEEEEec
Q 006559          340 LLGKGCVGATYKVVLDG---------GDVVVVKRIRERKKK-REVDEWLRVIGGLRHSNI-VSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~~---------~~~vavK~l~~~~~~-~~~~~e~~~l~~l~H~ni-v~l~~~~~~~~~~~lV~Ey  408 (640)
                      .|+.|....+|++...+         +..+++|........ .+...|.++++.+...++ .++++..  .  -++||||
T Consensus        40 ~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~~v~e~  115 (369)
T 3c5i_A           40 QILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDELYNTISEFEVYKTMSKYKIAPQLLNTF--N--GGRIEEW  115 (369)
T ss_dssp             EC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGGTSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEEEEEC
T ss_pred             EeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccceecHHHHHHHHHHHHhcCCCCceEEec--C--CcEEEEE
Confidence            46778788999988754         257888876543211 123456666665543333 4566554  2  2689999


Q ss_pred             cCCCC
Q 006559          409 LPHGS  413 (640)
Q Consensus       409 ~~~gs  413 (640)
                      +++..
T Consensus       116 i~G~~  120 (369)
T 3c5i_A          116 LYGDP  120 (369)
T ss_dssp             CCSEE
T ss_pred             ecCCc
Confidence            98754

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=96.03  E-value=0.029  Score=52.69  Aligned_cols=102  Identities=15%  Similarity=0.107  Sum_probs=64.0

Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCccc
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFI  491 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~~~  491 (640)
                      -+|.++|.....    +++..+.+.++.|.+++|.-+-....+  ..+=+-|..|++..+|.+...+ ..+.      ..
T Consensus        33 vSL~eIL~~~~~----PlsEEqaWALc~Qc~~~L~~~~~~~~~--~~~i~~~~~i~l~~dG~V~f~~-~~s~------~~   99 (229)
T 2yle_A           33 LSLEEILRLYNQ----PINEEQAWAVCYQCCGSLRAAARRRQP--RHRVRSAAQIRVWRDGAVTLAP-AADD------AG   99 (229)
T ss_dssp             EEHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHTTCC--CCCCCSGGGEEEETTSCEEECC-C-----------
T ss_pred             ccHHHHHHHcCC----CcCHHHHHHHHHHHHHHHHhhhhcccC--CceecCCcceEEecCCceeccc-cccc------cc
Confidence            478999876543    799999999999999998766211011  1222346889999999988764 2211      11


Q ss_pred             cccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCC
Q 006559          492 NDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKM  534 (640)
Q Consensus       492 ~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~  534 (640)
                      ...+.+||..        ....+.+.=|||+|+++|.-+--..
T Consensus       100 ~~~~~~pe~~--------~~~~te~~~IysLG~tLY~ALDygL  134 (229)
T 2yle_A          100 EPPPVAGKLG--------YSQCMETEVIESLGIIIYKALDYGL  134 (229)
T ss_dssp             -------CCS--------SSSSCHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCCChhhc--------cccchHHHHHHHHHHHHHHHhhcCC
Confidence            2245688853        1244567889999999999886333

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=95.72  E-value=0.038  Score=56.40  Aligned_cols=32  Identities=25%  Similarity=0.285  Sum_probs=27.4

Q ss_pred             CCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          453 KAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       453 ~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      ...++|+|+.+.||+++.++.+.|.||+.+..
T Consensus       205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             GCEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             CceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence            34689999999999999888899999976653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.67  E-value=0.1  Score=53.86  Aligned_cols=106  Identities=13%  Similarity=0.122  Sum_probs=75.3

Q ss_pred             hhccCCCCCCEEeCCCCcCCCCC-CCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCC
Q 006559           85 EVLSRLTQLRLLSLKNNLLSSSN-LNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLP  163 (640)
Q Consensus        85 ~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~  163 (640)
                      ..+.....|+.+.+..+ +.... ..+.++.+|+.+.+..+ +...-...|.++++|+.+++.+|.++ .|+...|.+++
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~  310 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCV  310 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCT
T ss_pred             ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCC
Confidence            34667788888888765 33322 25777888888888654 44444456788888998888888777 56667788888


Q ss_pred             CCcEEEccCCcceecccCCcCCCCCCcEEEc
Q 006559          164 NLLTLRLEDNRFTGTLYSVNSSSRSILDFNV  194 (640)
Q Consensus       164 ~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~l  194 (640)
                      +|+.+.|.++ ++..-...|.++.+|+.+.+
T Consensus       311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          311 KLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            8998888655 55444566777888877654

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=95.37  E-value=0.067  Score=56.93  Aligned_cols=72  Identities=11%  Similarity=0.101  Sum_probs=44.0

Q ss_pred             ccccccCcceEEEEEeCC-CcEEEEEEecccc-chHHHHHHHHHHhccCCCcc-cceeEEEEcCCeEEEEEeccCCCCH
Q 006559          339 ELLGKGCVGATYKVVLDG-GDVVVVKRIRERK-KKREVDEWLRVIGGLRHSNI-VSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~~-~~~~~~~e~~~l~~l~H~ni-v~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      +.|+.|-...+|++...+ +..+++|+..... ..-+...|.++++.|...++ .++++++.  +  .+||||+++..|
T Consensus       114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G~~l  188 (458)
T 2qg7_A          114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEIINREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDGYAL  188 (458)
T ss_dssp             EEECC--CEEEEEEEETTTTEEEEEEEECC-CCSCSCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCSEEC
T ss_pred             EEcCCCeEeEEEEEEECCCCceEEEEECCCChhhhcCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCCccC
Confidence            357778888999998775 4677888764331 11112467777776654445 46777763  2  259999987443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.29  E-value=0.032  Score=58.15  Aligned_cols=101  Identities=10%  Similarity=0.037  Sum_probs=74.7

Q ss_pred             hccCCCCCCEEeCCCCcCCCCC-CCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCC
Q 006559           86 VLSRLTQLRLLSLKNNLLSSSN-LNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPN  164 (640)
Q Consensus        86 ~l~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~  164 (640)
                      .+....+|+.+.+.++ +.... ..|.++++|+.++|.++ ++-.-...|.++++|+.++|..| ++ .|+...|.++++
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~  367 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCIN  367 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCC
Confidence            4566778888888655 43322 25889999999999755 66555678999999999999877 65 577788999999


Q ss_pred             CcEEEccCCcceecccCCcCCCCCCcEE
Q 006559          165 LLTLRLEDNRFTGTLYSVNSSSRSILDF  192 (640)
Q Consensus       165 L~~L~L~~N~l~g~~~~~~~~~~~L~~l  192 (640)
                      |+.++|..| ++ .+...+.++.+|+.+
T Consensus       368 L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          368 LKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            999999766 22 233456667777653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.24  E-value=0.0064  Score=56.62  Aligned_cols=86  Identities=20%  Similarity=0.325  Sum_probs=61.3

Q ss_pred             CCCCCCcEEEcccc-ccccc----CCccCCCCCCCCEEEcccCCCCCC----CCchhcCCCCCCcEEEccCCcceec---
Q 006559          111 SSWPHLKHLYLSHN-RFTGT----FPSGVSSLRHLRRVDLSHNAYEGE----IPMTELTRLPNLLTLRLEDNRFTGT---  178 (640)
Q Consensus       111 ~~l~~L~~L~Ls~N-~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~~l~~L~~L~L~~N~l~g~---  178 (640)
                      .+-+.|+.|+|++| .+...    +-..+..-+.|+.|+|++|.+...    |- ..+..-+.|+.|+|++|+|+..   
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA-~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI-ELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH-HHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHH-HHHhcCCccCeEecCCCcCCHHHHH
Confidence            44568999999986 77421    334456678999999999999731    11 2233457899999999999854   


Q ss_pred             -ccCCcCCCCCCcEEEcccC
Q 006559          179 -LYSVNSSSRSILDFNVSNN  197 (640)
Q Consensus       179 -~~~~~~~~~~L~~l~ls~N  197 (640)
                       +...+..-..|+.|+|++|
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence             3334555667999999865

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=91.31  E-value=0.51  Score=49.50  Aligned_cols=71  Identities=15%  Similarity=0.072  Sum_probs=42.9

Q ss_pred             cccccCcceEEEEEeCC--------CcEEEEEEecccc-chHHHHHHHHHHhccCCCcc-cceeEEEEcCCeEEEEEecc
Q 006559          340 LLGKGCVGATYKVVLDG--------GDVVVVKRIRERK-KKREVDEWLRVIGGLRHSNI-VSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~~--------~~~vavK~l~~~~-~~~~~~~e~~~l~~l~H~ni-v~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .+..|-...+|+....+        +..+++++..... ..-+..+|.++++.+.-.++ .++++.+.    -++||||+
T Consensus        77 ~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~~idR~~E~~~l~~L~~~gi~P~l~~~~~----~~~I~efI  152 (424)
T 3mes_A           77 QIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGKFYDSKVELDVFRYLSNINIAPNIIADFP----EGRIEEFI  152 (424)
T ss_dssp             EECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-CCCCHHHHHHHHHHHHHTTSSCCEEEEET----TEEEEECC
T ss_pred             EcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcchhcCHHHHHHHHHHHHhcCCCCCEEEEcC----CCEEEEEe
Confidence            45567777899988763        4678888764431 11123456666665543233 45565442    27899999


Q ss_pred             CCCCH
Q 006559          410 PHGSL  414 (640)
Q Consensus       410 ~~gsL  414 (640)
                      ++..|
T Consensus       153 ~G~~l  157 (424)
T 3mes_A          153 DGEPL  157 (424)
T ss_dssp             CSEEC
T ss_pred             CCccC
Confidence            98653

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=83.95  E-value=3.2  Score=43.00  Aligned_cols=29  Identities=14%  Similarity=0.246  Sum_probs=24.3

Q ss_pred             ceecCCCCCCeEE------CCCCCeEEccCCcccc
Q 006559          456 LFHGHLSSSNIVV------DQLGNACISDIGVHQL  484 (640)
Q Consensus       456 ivHrdlk~~NILl------~~~~~~kl~DfGl~~~  484 (640)
                      ++|+|+.+.|||+      +++..+.++||..+..
T Consensus       246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~  280 (401)
T 3g15_A          246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY  280 (401)
T ss_dssp             EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred             eEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence            5799999999999      4567899999987654

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=83.42  E-value=2.2  Score=39.86  Aligned_cols=122  Identities=8%  Similarity=0.094  Sum_probs=82.0

Q ss_pred             HHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCce
Q 006559          378 LRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLF  457 (640)
Q Consensus       378 ~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iv  457 (640)
                      +.+|. ..||+.+.. .+-...+.+.+.|+.-+.+-=...++        .++...+++++..|+.-.+++++     -+
T Consensus        37 l~LL~-~~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~ik--------~~~~~eKlr~l~ni~~l~~~~~~-----r~  101 (215)
T 4ann_A           37 MYLLE-QHSPYFIDA-ELTELRDSFQIHYDINDNHTPFDNIK--------SFTKNEKLRYLLNIKNLEEVNRT-----RY  101 (215)
T ss_dssp             GGGGG-SCCTTBCCE-EEEECSSEEEEEECCCTTSEEGGGGG--------GSCHHHHHHHHHHGGGGGGGGGS-----SE
T ss_pred             HHHHh-ccCCcccce-EEEEcccEEEEEEEcCcccCCHHHHH--------hcCHHHHHHHHHHHHHHHHHhcC-----ce
Confidence            33443 268888876 55666777777777544332222233        35678899999999988877763     35


Q ss_pred             ecCCCCCCeEECCCCCeEEccCCcccccCCCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCC
Q 006559          458 HGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKG  537 (640)
Q Consensus       458 Hrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~  537 (640)
                      |--|.|+|++++.++.+++.-.|+...+           +|.            ..+..-=.-.+=+++..+++++..|+
T Consensus       102 tf~L~P~NL~f~~~~~p~i~~RGik~~l-----------~P~------------~~~ee~fL~qyKAliiall~~K~~Fe  158 (215)
T 4ann_A          102 TFVLAPDELFFTRDGLPIAKTRGLQNVV-----------DPL------------PVSEAEFLTRYKALVICAFNEKQSFD  158 (215)
T ss_dssp             ECCCSGGGEEECTTSCEEESCCEETTTB-----------SCC------------CCCHHHHHHHHHHHHHHHHCTTCCHH
T ss_pred             EEEEecceEEEcCCCCEEEEEccCccCC-----------CCC------------CCCHHHHHHHHHHHHHHHHcCCCCHH
Confidence            7789999999999999999988875433           222            01111123357788899999998875

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=81.16  E-value=0.22  Score=53.08  Aligned_cols=56  Identities=7%  Similarity=-0.046  Sum_probs=16.1

Q ss_pred             ccccccCcceEEEEEeCC-CcEEEE------EEecccc----chHHHHHHHHHHhccCCCcccceeEEEE
Q 006559          339 ELLGKGCVGATYKVVLDG-GDVVVV------KRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCN  397 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~-~~~vav------K~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~  397 (640)
                      +.||   ||.||+|.+.. ...|||      |..+...    ....+.++..+++.++|||+++.+++..
T Consensus       148 ~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~  214 (463)
T 3cxl_A          148 EHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV  214 (463)
T ss_dssp             TTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred             ccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence            3455   99999999865 357888      7666532    1234667778888899999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	640
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	9e-45
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	6e-44
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	5e-43
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	3e-42
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	3e-40
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	9e-39
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-38
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	8e-38
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	4e-37
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	4e-37
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	5e-37
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	5e-37
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	5e-35
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	1e-34
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	3e-34
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	4e-34
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	4e-34
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	4e-34
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	7e-34
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	1e-33
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-33
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	2e-33
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	1e-32
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-32
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	3e-32
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	2e-31
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	2e-31
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	5e-31
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-30
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	8e-30
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	1e-29
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-29
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	2e-29
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	1e-28
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	1e-28
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	3e-28
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	5e-28
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	2e-27
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	3e-27
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	9e-27
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-25
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	1e-25
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	2e-25
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	2e-24
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	9e-24
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	2e-23
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	3e-23
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	4e-23
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	6e-23
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	2e-22
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-22
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	7e-22
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	9e-21
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-20
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	4e-19
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	5e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-06
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	3e-18
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	3e-18
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	8e-16
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	2e-15
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	5e-14
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	1e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-09
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	6e-07
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	6e-07
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	7e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	6e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  159 bits (403), Expect = 9e-45
 Identities = 73/301 (24%), Positives = 120/301 (39%), Gaps = 36/301 (11%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEW-LRVIGGLRHSNIVSIRAYCN 397
           E +GKG  G  ++    G + V VK    R+++    E  +     LRH NI+   A  N
Sbjct: 9   ESIGKGRFGEVWRGKWRG-EEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADN 67

Query: 398 GKD----ELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH---- 449
             +    +L+LV DY  HGSL   L+      R  V     +KLA  +A GLA LH    
Sbjct: 68  KDNGTWTQLWLVSDYHEHGSLFDYLN------RYTVTVEGMIKLALSTASGLAHLHMEIV 121

Query: 450 -GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH----------TPFFINDAYNAP 498
               K  + H  L S NI+V + G  CI+D+G+                       Y AP
Sbjct: 122 GTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAP 181

Query: 499 ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE 558
           E+  +++ N    + ++R D+Y+ G+V  EI       G  E   + +  ++  D S  E
Sbjct: 182 EV-LDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEE 240

Query: 559 V--------FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGS 610
           +            +    +  E +R + ++   C       R     + + +  +  +  
Sbjct: 241 MRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEG 300

Query: 611 I 611
           I
Sbjct: 301 I 301

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  156 bits (395), Expect = 6e-44
 Identities = 61/270 (22%), Positives = 117/270 (43%), Gaps = 20/270 (7%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRE-RKKKREVDEWLRVIGGLRHSNIVSIRAYCN 397
           E LG G  G  +    +G   V VK +++             ++  L+H  +V + A   
Sbjct: 19  ERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVT 78

Query: 398 GKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLF 457
            ++ ++++ +Y+ +GSL   L     P  + +  NK L +A+  A+G+AF+    + +  
Sbjct: 79  -QEPIYIITEYMENGSLVDFLKT---PSGIKLTINKLLDMAAQIAEGMAFIE---ERNYI 131

Query: 458 HGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRC 517
           H  L ++NI+V    +  I+D G+ +L     +         +K+      +   F  + 
Sbjct: 132 HRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKS 191

Query: 518 DVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRAL 577
           DV+SFG++L EI+T          G + +  M   +        + ++      EE+  L
Sbjct: 192 DVWSFGILLTEIVTH---------GRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQL 242

Query: 578 LQVALLCLAPLPKDRPNMSIVHRMIEDIRT 607
           +    LC    P+DRP    +  ++ED  T
Sbjct: 243 M---RLCWKERPEDRPTFDYLRSVLEDFFT 269

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (389), Expect = 5e-43
 Identities = 60/281 (21%), Positives = 109/281 (38%), Gaps = 36/281 (12%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIR-ERKKKREVDEWLR---VIGGLRHSNIVSIRA 394
           + +G G  G  YK    G   V VK +       +++  +     V+   RH NI+    
Sbjct: 14  QRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMG 71

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA 454
           Y     +L +V  +    SL+  LH          +  K + +A  +A+G+ +LH  +  
Sbjct: 72  YSTA-PQLAIVTQWCEGSSLYHHLHIIETK----FEMIKLIDIARQTAQGMDYLHAKS-- 124

Query: 455 HLFHGHLSSSNIVVDQLGNACISDIGVHQLFH--------TPFFINDAYNAPE-LKFNNN 505
            + H  L S+NI + +     I D G+  +               +  + APE ++  + 
Sbjct: 125 -IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDK 183

Query: 506 NNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI 565
           N YS +      DVY+FG+VL E++TG++   +        +    Q             
Sbjct: 184 NPYSFQ-----SDVYAFGIVLYELMTGQLPYSN--------INNRDQIIFMVGRGYLSPD 230

Query: 566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR 606
           + K      +A+ ++   CL     +RP    +   IE + 
Sbjct: 231 LSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLA 271

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  151 bits (382), Expect = 3e-42
 Identities = 60/273 (21%), Positives = 110/273 (40%), Gaps = 30/273 (10%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYC-N 397
           + +GKG  G        G + V VK I+     +       V+  LRHSN+V +      
Sbjct: 13  QTIGKGEFGDVMLGDYRG-NKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVE 71

Query: 398 GKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLF 457
            K  L++V +Y+  GSL   L      GR  +  +  LK + D  + + +L      +  
Sbjct: 72  EKGGLYIVTEYMAKGSLVDYLRSR---GRSVLGGDCLLKFSLDVCEAMEYLE---GNNFV 125

Query: 458 HGHLSSSNIVVDQLGNACISDIGVHQLF---HTPFFINDAYNAPELKFNNNNNYSQRKFW 514
           H  L++ N++V +   A +SD G+ +          +   + APE          ++KF 
Sbjct: 126 HRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEA-------LREKKFS 178

Query: 515 QRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEM 574
            + DV+SFG++L EI +          G V + ++  +D        +++         +
Sbjct: 179 TKSDVWSFGILLWEIYSF---------GRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAV 229

Query: 575 RALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT 607
             ++     C       RP+   +   +E I+T
Sbjct: 230 YEVM---KNCWHLDAAMRPSFLQLREQLEHIKT 259

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (368), Expect = 3e-40
 Identities = 56/279 (20%), Positives = 112/279 (40%), Gaps = 34/279 (12%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERK-KKREVDEWLRVIGGLRHSNIVSIRAYCN 397
           + +G G  G  +       D V +K IRE    + +  E   V+  L H  +V +   C 
Sbjct: 11  QEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCL 70

Query: 398 GKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLF 457
            +  + LV++++ HG L   L       R        L +  D  +G+A+L    +A + 
Sbjct: 71  EQAPICLVFEFMEHGCLSDYLRTQ----RGLFAAETLLGMCLDVCEGMAYLE---EACVI 123

Query: 458 HGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFIND-------AYNAPELKFNNNNNYSQ 510
           H  L++ N +V +     +SD G+ +      + +         + +PE+       +S 
Sbjct: 124 HRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEV-------FSF 176

Query: 511 RKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEM 570
            ++  + DV+SFGV++ E+ +      +         +++    + + ++   L      
Sbjct: 177 SRYSSKSDVWSFGVLMWEVFSEGKIPYENR----SNSEVVEDISTGFRLYKPRLASTH-- 230

Query: 571 EEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG 609
                 + Q+   C    P+DRP  S + R + +I   G
Sbjct: 231 ------VYQIMNHCWKERPEDRPAFSRLLRQLAEIAESG 263

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (359), Expect = 9e-39
 Identities = 57/272 (20%), Positives = 111/272 (40%), Gaps = 24/272 (8%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERK-KKREVDEWLRVIGGLRHSNIVSIRAYCN 397
             LG+GC G  +    +G   V +K ++          +  +V+  LRH  +V + A  +
Sbjct: 23  VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 82

Query: 398 GKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLF 457
            ++ +++V +Y+  GSL   L G  G         + + +A+  A G+A++   N     
Sbjct: 83  -EEPIYIVTEYMSKGSLLDFLKGETGKYLR---LPQLVDMAAQIASGMAYVERMN---YV 135

Query: 458 HGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRC 517
           H  L ++NI+V +     ++D G+ +L     +         +K+         +F  + 
Sbjct: 136 HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKS 195

Query: 518 DVYSFGVVLLEILTGKMA--KGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMR 575
           DV+SFG++L E+ T       G     ++  V+             + +    E  E + 
Sbjct: 196 DVWSFGILLTELTTKGRVPYPGMVNREVLDQVER-----------GYRMPCPPECPESLH 244

Query: 576 ALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT 607
            L+     C    P++RP    +   +ED  T
Sbjct: 245 DLM---CQCWRKEPEERPTFEYLQAFLEDYFT 273

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  141 bits (357), Expect = 2e-38
 Identities = 61/277 (22%), Positives = 121/277 (43%), Gaps = 24/277 (8%)

Query: 339 ELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRA 394
             LG G  G  Y+ V       V VK ++  +   EV+E+L+   V+  ++H N+V +  
Sbjct: 23  HKLGGGQYGEVYEGVWKKYSLTVAVKTLK--EDTMEVEEFLKEAAVMKEIKHPNLVQLLG 80

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA 454
            C  +   +++ +++ +G+L   L       R  V     L +A+  +  + +L    K 
Sbjct: 81  VCTREPPFYIITEFMTYGNLLDYLREC---NRQEVSAVVLLYMATQISSAMEYLE---KK 134

Query: 455 HLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFW 514
           +  H  L++ N +V +     ++D G+ +L     +   A     +K+    + +  KF 
Sbjct: 135 NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFS 194

Query: 515 QRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEM 574
            + DV++FGV+L EI T  M+   G                 +E+ + +  M++  E   
Sbjct: 195 IKSDVWAFGVLLWEIATYGMSPYPGI-----------DLSQVYELLEKDYRMERP-EGCP 242

Query: 575 RALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGSI 611
             + ++   C    P DRP+ + +H+  E +  + SI
Sbjct: 243 EKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESSI 279

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  140 bits (353), Expect = 8e-38
 Identities = 60/296 (20%), Positives = 121/296 (40%), Gaps = 44/296 (14%)

Query: 339 ELLGKGCVGATYKVVLDG------GDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNI 389
             +G+G  G  ++    G        +V VK ++E        ++ R   ++    + NI
Sbjct: 19  RDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNI 78

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRG-------------------PGRMPVD 430
           V +   C     + L+++Y+ +G L+  L                        PG  P+ 
Sbjct: 79  VKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLS 138

Query: 431 WNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-F 489
             ++L +A   A G+A+L         H  L++ N +V +     I+D G+ +  ++  +
Sbjct: 139 CAEQLCIARQVAAGMAYLSERK---FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADY 195

Query: 490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQM 549
           +  D  +A  +++    +    ++    DV+++GVVL EI +  +    G          
Sbjct: 196 YKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYG---------- 245

Query: 550 MGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
           M  +E  + V D  ++     E     L  +  LC + LP DRP+   +HR+++ +
Sbjct: 246 MAHEEVIYYVRDGNIL--ACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRM 299

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  138 bits (348), Expect = 4e-37
 Identities = 49/278 (17%), Positives = 106/278 (38%), Gaps = 30/278 (10%)

Query: 339 ELLGKGCVGATYKVVLDGGD----VVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVS 391
           +++G G  G      L         V +K ++    +++  ++L    ++G   H N++ 
Sbjct: 32  QVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIH 91

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY 451
           +         + ++ +++ +GSL S L  + G         + + +    A G+ +L   
Sbjct: 92  LEGVVTKSTPVMIITEFMENGSLDSFLRQNDG----QFTVIQLVGMLRGIAAGMKYLADM 147

Query: 452 NKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF----HTPFFINDAYNAPELKFNNNNN 507
           N     H  L++ NI+V+      +SD G+ +        P + +       +++     
Sbjct: 148 N---YVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEA 204

Query: 508 YSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD 567
              RKF    DV+S+G+V+ E+++          G   +  M  QD       D+ L   
Sbjct: 205 IQYRKFTSASDVWSYGIVMWEVMS---------YGERPYWDMTNQDVINAIEQDYRLPPP 255

Query: 568 KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
            +    +    Q+ L C       RP    +   ++ +
Sbjct: 256 MDCPSALH---QLMLDCWQKDRNHRPKFGQIVNTLDKM 290

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 4e-37
 Identities = 51/268 (19%), Positives = 106/268 (39%), Gaps = 20/268 (7%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERK-KKREVDEWLRVIGGLRHSNIVSIRAYCN 397
           + LG G  G        G   V +K I+E    + E  E  +V+  L H  +V +   C 
Sbjct: 10  KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCT 69

Query: 398 GKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLF 457
            +  +F++ +Y+ +G L + L   R          + L++  D  + + +L         
Sbjct: 70  KQRPIFIITEYMANGCLLNYLREMRH----RFQTQQLLEMCKDVCEAMEYLE---SKQFL 122

Query: 458 HGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRC 517
           H  L++ N +V+  G   +SD G+ +      + +   +   ++++        KF  + 
Sbjct: 123 HRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKS 182

Query: 518 DVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRAL 577
           D+++FGV++ EI +         LG + + +    + +        L       E++  +
Sbjct: 183 DIWAFGVLMWEIYS---------LGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTI 233

Query: 578 LQVALLCLAPLPKDRPNMSIVHRMIEDI 605
           +     C      +RP   I+   I D+
Sbjct: 234 M---YSCWHEKADERPTFKILLSNILDV 258

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (346), Expect = 5e-37
 Identities = 63/273 (23%), Positives = 111/273 (40%), Gaps = 28/273 (10%)

Query: 341 LGKGCVGATYKVVL---DGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRA 394
           LG G  G+  + V         V +K +++  +K + +E +R   ++  L +  IV +  
Sbjct: 17  LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 76

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA 454
            C   + L LV +    G LH  L G R      +  +   +L    + G+ +L   N  
Sbjct: 77  VCQA-EALMLVMEMAGGGPLHKFLVGKREE----IPVSNVAELLHQVSMGMKYLEEKN-- 129

Query: 455 HLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPE--LKFNNNNNYSQRK 512
              H  L++ N+++     A ISD G+ +          A +A +  LK+      + RK
Sbjct: 130 -FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRK 188

Query: 513 FWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEE 572
           F  R DV+S+GV + E L+          G   + +M G +  A+      +    E   
Sbjct: 189 FSSRSDVWSYGVTMWEALS---------YGQKPYKKMKGPEVMAFIEQGKRMECPPECPP 239

Query: 573 EMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
           E+ AL+     C     +DRP+   V + +   
Sbjct: 240 ELYALM---SDCWIYKWEDRPDFLTVEQRMRAC 269

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (348), Expect = 5e-37
 Identities = 57/288 (19%), Positives = 105/288 (36%), Gaps = 44/288 (15%)

Query: 339 ELLGKGCVGATYKVVLDGGD----VVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVS 391
           E++G+G  G  Y   L   D       VK +       EV ++L    ++    H N++S
Sbjct: 33  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 92

Query: 392 IRAYC-NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
           +   C   +    +V  Y+ HG L + +                +      AKG+ FL  
Sbjct: 93  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN----PTVKDLIGFGLQVAKGMKFLA- 147

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH----------TPFFINDAYNAPEL 500
                  H  L++ N ++D+     ++D G+ +  +          T   +   + A E 
Sbjct: 148 --SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALES 205

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVF 560
                     +KF  + DV+SFGV+L E++T        ++        + Q        
Sbjct: 206 -------LQTQKFTTKSDVWSFGVLLWELMTRGAPP-YPDVNTFDITVYLLQGR------ 251

Query: 561 DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK 608
              L+  +   + +    +V L C  P  + RP+ S +   I  I + 
Sbjct: 252 --RLLQPEYCPDPLY---EVMLKCWHPKAEMRPSFSELVSRISAIFST 294

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 5e-35
 Identities = 50/284 (17%), Positives = 110/284 (38%), Gaps = 43/284 (15%)

Query: 339 ELLGKGCVGATYKVVLDGGD-----VVVVKRIRERKKKREVDEWLR---VIGGLRHSNIV 390
           +++G G  G  YK +L          V +K ++    +++  ++L    ++G   H NI+
Sbjct: 13  KVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNII 72

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
            +    +    + ++ +Y+ +G+L   L    G         + + +    A G+ +L  
Sbjct: 73  RLEGVISKYKPMMIITEYMENGALDKFLREKDGE----FSVLQLVGMLRGIAAGMKYLA- 127

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH---------TPFFINDAYNAPELK 501
               +  H  L++ NI+V+      +SD G+ ++           +   I   + APE  
Sbjct: 128 --NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPE-- 183

Query: 502 FNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFD 561
                  S RKF    DV+SFG+V+ E++T             +       +    +  +
Sbjct: 184 -----AISYRKFTSASDVWSFGIVMWEVMTYG-----------ERPYWELSNHEVMKAIN 227

Query: 562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
               +     +   A+ Q+ + C       RP  + +  +++ +
Sbjct: 228 DGFRLPTP-MDCPSAIYQLMMQCWQQERARRPKFADIVSILDKL 270

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 1e-34
 Identities = 58/298 (19%), Positives = 104/298 (34%), Gaps = 52/298 (17%)

Query: 339 ELLGKGCVGATYKVVL------DGGDVVVVKRIRERKKKREVDEWLRVIGGL----RHSN 388
           + LG G  G   +         D    V VK ++      E +  +  +  L     H N
Sbjct: 29  KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMN 88

Query: 389 IVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGP-------------GRMPVDWNKRL 435
           IV++   C       ++ +Y  +G L + L   R                 + +D    L
Sbjct: 89  IVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLL 148

Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH--------T 487
             +   AKG+AFL      +  H  L++ NI++       I D G+ +            
Sbjct: 149 SFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKG 205

Query: 488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWV 547
              +   + APE  FN    +         DV+S+G+ L E+ +   +   G     K+ 
Sbjct: 206 NARLPVKWMAPESIFNCVYTFE-------SDVWSYGIFLWELFSLGSSPYPGMPVDSKFY 258

Query: 548 QMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
           +M+ +         F ++  +    EM  ++     C    P  RP    + ++IE  
Sbjct: 259 KMIKE--------GFRMLSPEHAPAEMYDIM---KTCWDADPLKRPTFKQIVQLIEKQ 305

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (329), Expect = 3e-34
 Identities = 54/301 (17%), Positives = 107/301 (35%), Gaps = 57/301 (18%)

Query: 339 ELLGKGCVGATYKVVLDGGD------VVVVKRIRERKKKREVDEWLRVIGGL----RHSN 388
           ++LG G  G        G         V VK ++E+    E +  +  +  +     H N
Sbjct: 43  KVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHEN 102

Query: 389 IVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGP------------------GRMPVD 430
           IV++   C     ++L+++Y  +G L + L   R                        + 
Sbjct: 103 IVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLT 162

Query: 431 WNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV--------H 482
           +   L  A   AKG+ FL         H  L++ N++V       I D G+        +
Sbjct: 163 FEDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSN 219

Query: 483 QLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG 542
            +      +   + APE       +  +  +  + DV+S+G++L EI +  +    G   
Sbjct: 220 YVVRGNARLPVKWMAPE-------SLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV 272

Query: 543 IVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMI 602
              + +++           F++       EE+  ++Q    C A   + RP+   +   +
Sbjct: 273 DANFYKLIQN--------GFKMDQPFYATEEIYIIMQ---SCWAFDSRKRPSFPNLTSFL 321

Query: 603 E 603
            
Sbjct: 322 G 322

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 4e-34
 Identities = 47/268 (17%), Positives = 99/268 (36%), Gaps = 31/268 (11%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRA 394
             LG G  G  YK    +   +   K I   K + E+++++    ++    H NIV +  
Sbjct: 18  GELGDGAFGKVYKAQNKETSVLAAAKVID-TKSEEELEDYMVEIDILASCDHPNIVKLLD 76

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA 454
               ++ L+++ ++   G++ +++         P+  ++   +   +   L +LH     
Sbjct: 77  AFYYENNLWILIEFCAGGAVDAVMLELER----PLTESQIQVVCKQTLDALNYLH---DN 129

Query: 455 HLFHGHLSSSNIVVDQLGNACISDIGVHQLF------HTPFFINDAYNAPELKFNNNNNY 508
            + H  L + NI+    G+  ++D GV             F     + APE+        
Sbjct: 130 KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVM--CETS 187

Query: 509 SQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK 568
             R +  + DV+S G+ L+E+   +    +  L  ++ +  + + E         L    
Sbjct: 188 KDRPYDYKADVWSLGITLIEMAEIEPPHHE--LNPMRVLLKIAKSEP------PTLAQPS 239

Query: 569 EMEEEMRALLQVALLCLAPLPKDRPNMS 596
                 +  L+    CL      R   S
Sbjct: 240 RWSSNFKDFLK---KCLEKNVDARWTTS 264

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (327), Expect = 4e-34
 Identities = 45/203 (22%), Positives = 77/203 (37%), Gaps = 22/203 (10%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRA 394
             LG G  G  +KV     G V+  K I    K    ++ +R   V+       IV    
Sbjct: 12  SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYG 71

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA 454
                 E+ +  +++  GSL  +L  +       +      K++    KGL +L    K 
Sbjct: 72  AFYSDGEISICMEHMDGGSLDQVLKKAG-----RIPEQILGKVSIAVIKGLTYLR--EKH 124

Query: 455 HLFHGHLSSSNIVVDQLGNACISDIGVHQLFH----TPFFINDAYNAPELKFNNNNNYSQ 510
            + H  +  SNI+V+  G   + D GV           F    +Y +PE           
Sbjct: 125 KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPER-------LQG 177

Query: 511 RKFWQRCDVYSFGVVLLEILTGK 533
             +  + D++S G+ L+E+  G+
Sbjct: 178 THYSVQSDIWSMGLSLVEMAVGR 200

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 4e-34
 Identities = 45/274 (16%), Positives = 98/274 (35%), Gaps = 27/274 (9%)

Query: 339 ELLGKGCVGATYKVVL----DGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVS 391
             +G+G  G  ++ +     +    V +K  +        +++L+    +    H +IV 
Sbjct: 13  RCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVK 72

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY 451
           +      ++ ++++ +    G L S L   +      +D    +  A   +  LA+L   
Sbjct: 73  LIGVIT-ENPVWIIMELCTLGELRSFLQVRKYS----LDLASLILYAYQLSTALAYLE-- 125

Query: 452 NKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQR 511
                 H  +++ N++V       + D G+ +      +   +     +K+    + + R
Sbjct: 126 -SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFR 184

Query: 512 KFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEME 571
           +F    DV+ FGV + EIL           G+  +  +   D          L M     
Sbjct: 185 RFTSASDVWMFGVCMWEILMH---------GVKPFQGVKNNDVIGRIENGERLPMPPNCP 235

Query: 572 EEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
             + +L+     C A  P  RP  + +   +  I
Sbjct: 236 PTLYSLM---TKCWAYDPSRRPRFTELKAQLSTI 266

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  129 bits (325), Expect = 7e-34
 Identities = 49/266 (18%), Positives = 100/266 (37%), Gaps = 32/266 (12%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR-----ERKKKREVDEWLRVIGGLRHSNIVSI 392
             +G G  GA Y    +   +VV +K++        +K +++ + +R +  LRH N +  
Sbjct: 21  REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQY 80

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
           R     +   +LV +Y    +   L    +     P+   +   +   + +GLA+LH   
Sbjct: 81  RGCYLREHTAWLVMEYCLGSASDLLEVHKK-----PLQEVEIAAVTHGALQGLAYLH--- 132

Query: 453 KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH--TPFFINDAYNAPELKFNNNNNYSQ 510
             ++ H  + + NI++ + G   + D G   +      F     + APE+    +     
Sbjct: 133 SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEG--- 189

Query: 511 RKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEM 570
            ++  + DV+S G+  +E+   K    +       +              +   +     
Sbjct: 190 -QYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQN---------ESPALQSGHW 239

Query: 571 EEEMRALLQVALLCLAPLPKDRPNMS 596
            E  R  +     CL  +P+DRP   
Sbjct: 240 SEYFRNFVD---SCLQKIPQDRPTSE 262

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (323), Expect = 1e-33
 Identities = 57/309 (18%), Positives = 115/309 (37%), Gaps = 37/309 (11%)

Query: 339 ELLGKGCVGATYKVVLDGGD---VVVVKRIRERKKKREVDEWLRVIGGL----RHSNIVS 391
           +++G+G  G   K  +          +KR++E   K +  ++   +  L     H NI++
Sbjct: 16  DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 75

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGS-----------RGPGRMPVDWNKRLKLASD 440
           +   C  +  L+L  +Y PHG+L   L  S                  +   + L  A+D
Sbjct: 76  LLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAAD 135

Query: 441 SAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPEL 500
            A+G+ +L    +    H  L++ NI+V +   A I+D G+ +                 
Sbjct: 136 VARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVR- 191

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVF 560
            +    + +   +    DV+S+GV+L EI++       G     +  + + Q        
Sbjct: 192 -WMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM-TCAELYEKLPQ-------- 241

Query: 561 DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR--TKGSIDGCANSI 618
            + L      ++E+  L+     C    P +RP+ + +   +  +    K  ++      
Sbjct: 242 GYRLEKPLNCDDEVYDLM---RQCWREKPYERPSFAQILVSLNRMLEERKTYVNTTLYEK 298

Query: 619 MNNISSDSS 627
                 D S
Sbjct: 299 FTYAGIDCS 307

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (319), Expect = 2e-33
 Identities = 45/273 (16%), Positives = 95/273 (34%), Gaps = 36/273 (13%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR----ERKKKREVDEWLRVIGGLRHSNIVSIR 393
             +G G  G   K+     G ++V K +        +K+ +   + ++  L+H NIV   
Sbjct: 10  YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYY 69

Query: 394 AYCNGKDE--LFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH-- 449
                +    L++V +Y   G L S++       R  +D    L++ +     L   H  
Sbjct: 70  DRIIDRTNTTLYIVMEYCEGGDLASVIT-KGTKERQYLDEEFVLRVMTQLTLALKECHRR 128

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP------FFINDAYNAPELKFN 503
                 + H  L  +N+ +D   N  + D G+ ++ +        F     Y +PE    
Sbjct: 129 SDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQ--- 185

Query: 504 NNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE 563
                ++  + ++ D++S G +L E+              +      G+       +   
Sbjct: 186 ----MNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYS-- 239

Query: 564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMS 596
                   +E+  ++      L      RP++ 
Sbjct: 240 --------DELNEIIT---RMLNLKDYHRPSVE 261

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (321), Expect = 2e-33
 Identities = 51/268 (19%), Positives = 107/268 (39%), Gaps = 38/268 (14%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR--ERKKKREVDEWLRVIGGLRHSNIVSIRAY 395
           E +G+G  G  Y  + +  G  V ++++   ++ KK  +   + V+   ++ NIV+    
Sbjct: 26  EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 85

Query: 396 CNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAH 455
               DEL++V +YL  GSL  ++          +D  +   +  +  + L FLH      
Sbjct: 86  YLVGDELWVVMEYLAGGSLTDVVT------ETCMDEGQIAAVCRECLQALEFLH---SNQ 136

Query: 456 LFHGHLSSSNIVVDQLGNACISDIGVHQLFH------TPFFINDAYNAPELKFNNNNNYS 509
           + H  + S NI++   G+  ++D G            +       + APE         +
Sbjct: 137 VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPE-------VVT 189

Query: 510 QRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQDESAWEVFDFELIMDK 568
           ++ +  + D++S G++ +E++ G+     +  L  +  +   G           EL   +
Sbjct: 190 RKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGT---------PELQNPE 240

Query: 569 EMEEEMRALLQVALLCLAPLPKDRPNMS 596
           ++    R  L     CL    + R +  
Sbjct: 241 KLSAIFRDFLN---RCLDMDVEKRGSAK 265

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 1e-32
 Identities = 52/270 (19%), Positives = 94/270 (34%), Gaps = 37/270 (13%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRA 394
           + LG+G  G     V     + V VK +  ++     +   +   +   L H N+V    
Sbjct: 11  QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYG 70

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA 454
           +    +  +L  +Y   G L   +        + +      +       G+ +LH     
Sbjct: 71  HRREGNIQYLFLEYCSGGELFDRIE-----PDIGMPEPDAQRFFHQLMAGVVYLH---GI 122

Query: 455 HLFHGHLSSSNIVVDQLGNACISDIGVHQLFH--------TPFFINDAYNAPELKFNNNN 506
            + H  +   N+++D+  N  ISD G+  +F                 Y APEL      
Sbjct: 123 GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPEL-LKRRE 181

Query: 507 NYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM 566
            ++     +  DV+S G+VL  +L G++                 Q+ S W+     L  
Sbjct: 182 FHA-----EPVDVWSCGIVLTAMLAGEL--------PWDQPSDSCQEYSDWKEKKTYLNP 228

Query: 567 DKEMEEEMRALLQVALLCLAPLPKDRPNMS 596
            K+++    ALL      L   P  R  + 
Sbjct: 229 WKKIDSAPLALLH---KILVENPSARITIP 255

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 2e-32
 Identities = 61/293 (20%), Positives = 108/293 (36%), Gaps = 52/293 (17%)

Query: 339 ELLGKGCVGATYKVVLDG------GDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNI 389
             LG+G  G  Y+ V  G         V +K + E    RE  E+L    V+      ++
Sbjct: 26  RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHV 85

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRG-----PGRMPVDWNKRLKLASDSAKG 444
           V +    +      ++ + +  G L S L   R      P   P   +K +++A + A G
Sbjct: 86  VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADG 145

Query: 445 LAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH--------TPFFINDAYN 496
           +A+L+        H  L++ N +V +     I D G+ +  +            +   + 
Sbjct: 146 MAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWM 202

Query: 497 APELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESA 556
           +PE       +     F    DV+SFGVVL EI T                +   Q  S 
Sbjct: 203 SPE-------SLKDGVFTTYSDVWSFGVVLWEIATLA--------------EQPYQGLSN 241

Query: 557 WEVFDFELIMDKEM----EEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
            +V     +M+  +    +     L ++  +C    PK RP+   +   I++ 
Sbjct: 242 EQV--LRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEE 292

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (310), Expect = 3e-32
 Identities = 60/281 (21%), Positives = 101/281 (35%), Gaps = 44/281 (15%)

Query: 341 LGKGCVGATYKVVLDG---GDVVVVKRIR-ERKKKREVDEWLR---VIGGLRHSNIVSIR 393
           LG G  G   K           V VK ++ E       DE L    V+  L +  IV + 
Sbjct: 15  LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMI 74

Query: 394 AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNK 453
             C   +   LV +    G L+  L  +R      V     ++L    + G+ +L    +
Sbjct: 75  GICE-AESWMLVMEMAELGPLNKYLQQNR-----HVKDKNIIELVHQVSMGMKYLE---E 125

Query: 454 AHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA---------YNAPELKFNN 504
           ++  H  L++ N+++     A ISD G+ +          A         + APE     
Sbjct: 126 SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPEC---- 181

Query: 505 NNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL 564
               +  KF  + DV+SFGV++ E  +          G   +  M G + +A       +
Sbjct: 182 ---INYYKFSSKSDVWSFGVLMWEAFS---------YGQKPYRGMKGSEVTAMLEKGERM 229

Query: 565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
                   EM  L+    LC     ++RP  + V   + + 
Sbjct: 230 GCPAGCPREMYDLM---NLCWTYDVENRPGFAAVELRLRNY 267

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 2e-31
 Identities = 50/269 (18%), Positives = 95/269 (35%), Gaps = 41/269 (15%)

Query: 339 ELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEW-----LRVIGGLRHSNIVSI 392
             LGKG  G  Y         ++ +K + + + ++   E      + +   LRH NI+ +
Sbjct: 12  RPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRL 71

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
             Y +    ++L+ +Y P G+++  L           D  +     ++ A  L++ H   
Sbjct: 72  YGYFHDATRVYLILEYAPLGTVYRELQKLS-----KFDEQRTATYITELANALSYCH--- 123

Query: 453 KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFIN----DAYNAPELKFNNNNNY 508
              + H  +   N+++   G   I+D G      +           Y  PE+        
Sbjct: 124 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEM-------I 176

Query: 509 SQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQDESAWEVFDFELIMD 567
             R   ++ D++S GV+  E L GK   + +      K +  +            E    
Sbjct: 177 EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV------------EFTFP 224

Query: 568 KEMEEEMRALLQVALLCLAPLPKDRPNMS 596
             + E  R L+      L   P  RP + 
Sbjct: 225 DFVTEGARDLIS---RLLKHNPSQRPMLR 250

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 2e-31
 Identities = 56/288 (19%), Positives = 98/288 (34%), Gaps = 48/288 (16%)

Query: 339 ELLGKGCVGATYKVVLDGGD----VVVVKRIRERK--KKREVDEWLR---VIGGLRHSNI 389
           E LG G  G   +   D        V VK ++     +   +D+++R    +  L H N+
Sbjct: 14  EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNL 73

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH 449
           + +         + +V +  P GSL   L   +G            + A   A+G+ +L 
Sbjct: 74  IRLYGVVL-TPPMKMVTELAPLGSLLDRLRKHQGH----FLLGTLSRYAVQVAEGMGYLE 128

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIGV---------HQLFHTPFFINDAYNAPEL 500
                   H  L++ N+++       I D G+         H +      +  A+ APE 
Sbjct: 129 ---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPES 185

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA--KGDGELGIVKWVQMMGQDESAWE 558
                     R F    D + FGV L E+ T       G     I+  +   G+     E
Sbjct: 186 -------LKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPE 238

Query: 559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR 606
               ++               V + C A  P+DRP    +   + + +
Sbjct: 239 DCPQDIY-------------NVMVQCWAHKPEDRPTFVALRDFLLEAQ 273

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 5e-31
 Identities = 56/291 (19%), Positives = 107/291 (36%), Gaps = 39/291 (13%)

Query: 339 ELLGKGCVGATYKVVLDGGD--------VVVVKRIRERKKKREVDEWLRVIGGL----RH 386
           + LG+G  G        G D         V VK ++    ++++ + +  +  +    +H
Sbjct: 19  KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKH 78

Query: 387 SNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPG-----------RMPVDWNKRL 435
            NI+++   C     L+++ +Y   G+L   L   R PG              +     +
Sbjct: 79  KNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLV 138

Query: 436 KLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF-HTPFFINDA 494
             A   A+G+ +L         H  L++ N++V +     I+D G+ +   H  ++    
Sbjct: 139 SCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTT 195

Query: 495 YNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDE 554
                +K+        R +  + DV+SFGV+L EI T   +   G              E
Sbjct: 196 NGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV-----------PVE 244

Query: 555 SAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
             +++      MDK        L  +   C   +P  RP    +   ++ I
Sbjct: 245 ELFKLLKEGHRMDKP-SNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 294

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 1e-30
 Identities = 41/263 (15%), Positives = 95/263 (36%), Gaps = 25/263 (9%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKRE-VDEWLRVIGGLRHSNIVSIRAYC 396
           E LG+G  G  ++ V        + K ++ +   +  V + + ++   RH NI+ +    
Sbjct: 11  EDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESF 70

Query: 397 NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHL 456
              +EL ++++++    +   ++ S       ++  + +       + L FLH     ++
Sbjct: 71  ESMEELVMIFEFISGLDIFERINTSAF----ELNEREIVSYVHQVCEALQFLH---SHNI 123

Query: 457 FHGHLSSSNIVVDQLGNA--CISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFW 514
            H  +   NI+     ++   I + G  +           + APE  +     +      
Sbjct: 124 GHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPE--YYAPEVHQHDVVS 181

Query: 515 QRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEE 573
              D++S G ++  +L+G      +    I++ +            + F+    KE+  E
Sbjct: 182 TATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMN--------AEYTFDEEAFKEISIE 233

Query: 574 MRALLQVALLCLAPLPKDRPNMS 596
               +      L    K R   S
Sbjct: 234 AMDFVD---RLLVKERKSRMTAS 253

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 8e-30
 Identities = 56/272 (20%), Positives = 100/272 (36%), Gaps = 39/272 (14%)

Query: 339 ELLGKGCVGATYKVVL-DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIR 393
             +G+G     YK +  +    V    +++RK    +++   E   ++ GL+H NIV   
Sbjct: 15  IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFY 74

Query: 394 AYC----NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH 449
                   GK  + LV + +  G+L + L   +      +             KGL FLH
Sbjct: 75  DSWESTVKGKKCIVLVTELMTSGTLKTYLKRFK-----VMKIKVLRSWCRQILKGLQFLH 129

Query: 450 GYNKAHLFHGHLSSSNIVV-DQLGNACISDIGVHQLFHTPFFINDA----YNAPELKFNN 504
                 + H  L   NI +    G+  I D+G+  L    F         + APE     
Sbjct: 130 -TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPE----- 183

Query: 505 NNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL 564
                + K+ +  DVY+FG+ +LE+ T +    +         Q   Q            
Sbjct: 184 ---MYEEKYDESVDVYAFGMCMLEMATSEYPYSEC--------QNAAQIYRRVTSGVKPA 232

Query: 565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMS 596
             DK    E++ +++    C+     +R ++ 
Sbjct: 233 SFDKVAIPEVKEIIE---GCIRQNKDERYSIK 261

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  118 bits (297), Expect = 1e-29
 Identities = 46/269 (17%), Positives = 99/269 (36%), Gaps = 36/269 (13%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERK--KKREVDEWLRVIGGLRHSNIVSIRAY 395
           E LG G  G  ++ V    G V V K I       K  V   + ++  L H  ++++   
Sbjct: 35  EELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDA 94

Query: 396 CNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAH 455
              K E+ L+ ++L  G L   +          +   + +     + +GL  +H   +  
Sbjct: 95  FEDKYEMVLILEFLSGGELFDRIAAEDY----KMSEAEVINYMRQACEGLKHMH---EHS 147

Query: 456 LFHGHLSSSNIVVD--QLGNACISDIGVHQLFHTPFFIND-----AYNAPELKFNNNNNY 508
           + H  +   NI+ +  +  +  I D G+    +    +        + APE+        
Sbjct: 148 IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEI-------V 200

Query: 509 SQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQDESAWEVFDFELIMD 567
            +       D+++ GV+   +L+G     G+ +L  ++ V+           ++F+    
Sbjct: 201 DREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCD--------WEFDEDAF 252

Query: 568 KEMEEEMRALLQVALLCLAPLPKDRPNMS 596
             +  E +  ++     L   P+ R  + 
Sbjct: 253 SSVSPEAKDFIK---NLLQKEPRKRLTVH 278

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 1e-29
 Identities = 41/272 (15%), Positives = 87/272 (31%), Gaps = 43/272 (15%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSI 392
           ++LG+G          L       +K + +R      K   V     V+  L H   V +
Sbjct: 14  KILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL 73

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
                  ++L+    Y  +G L   +           D        ++    L +LH   
Sbjct: 74  YFTFQDDEKLYFGLSYAKNGELLKYIRKIG-----SFDETCTRFYTAEIVSALEYLH--- 125

Query: 453 KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH--------TPFFINDAYNAPELKFNN 504
              + H  L   NI++++  +  I+D G  ++            F     Y +PEL    
Sbjct: 126 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPEL---- 181

Query: 505 NNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL 564
               +++   +  D+++ G ++ +++ G      G            +     ++   E 
Sbjct: 182 ---LTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN-----------EYLIFQKIIKLEY 227

Query: 565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMS 596
              ++   + R L++     L      R    
Sbjct: 228 DFPEKFFPKARDLVE---KLLVLDATKRLGCE 256

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  117 bits (295), Expect = 2e-29
 Identities = 43/269 (15%), Positives = 96/269 (35%), Gaps = 36/269 (13%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR--ERKKKREVDEWLRVIGGLRHSNIVSIRAY 395
           E LG G  G  ++V     G+    K +       K  V + ++ +  LRH  +V++   
Sbjct: 32  EELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDA 91

Query: 396 CNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAH 455
               +E+ ++Y+++  G L   +          +  ++ ++      KGL  +H   + +
Sbjct: 92  FEDDNEMVMIYEFMSGGELFEKVADEHN----KMSEDEAVEYMRQVCKGLCHMH---ENN 144

Query: 456 LFHGHLSSSNIVV--DQLGNACISDIGVHQLF-----HTPFFINDAYNAPELKFNNNNNY 508
             H  L   NI+    +     + D G+                  + APE+        
Sbjct: 145 YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEV-------A 197

Query: 509 SQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQDESAWEVFDFELIMD 567
             +      D++S GV+   +L+G     G+ +   ++ V+           ++ +    
Sbjct: 198 EGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSC--------DWNMDDSAF 249

Query: 568 KEMEEEMRALLQVALLCLAPLPKDRPNMS 596
             + E+ +  ++     L   P  R  + 
Sbjct: 250 SGISEDGKDFIR---KLLLADPNTRMTIH 275

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 1e-28
 Identities = 51/273 (18%), Positives = 103/273 (37%), Gaps = 38/273 (13%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKK-KREVDEWLRVIGGLRHSNIVSIRAYC 396
           ++LG G  G   ++      +   +K +++  K +REV+   R     +  +IV I    
Sbjct: 18  QVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRA---SQCPHIVRIVDVY 74

Query: 397 ----NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
                G+  L +V + L  G L S +   RG         +  ++     + + +LH   
Sbjct: 75  ENLYAGRKCLLIVMECLDGGELFSRIQ-DRGDQAFT--EREASEIMKSIGEAIQYLH--- 128

Query: 453 KAHLFHGHLSSSNIVVD---QLGNACISDIGVHQLF-----HTPFFINDAYNAPELKFNN 504
             ++ H  +   N++           ++D G  +        T       Y APE+    
Sbjct: 129 SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEV---- 184

Query: 505 NNNYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQDESAWEVFDFE 563
                  K+ + CD++S GV++  +L G      +  L I   ++   +       ++F 
Sbjct: 185 ---LGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQ----YEFP 237

Query: 564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMS 596
                E+ EE++ L++     L   P  R  ++
Sbjct: 238 NPEWSEVSEEVKMLIR---NLLKTEPTQRMTIT 267

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  114 bits (286), Expect = 1e-28
 Identities = 38/268 (14%), Positives = 90/268 (33%), Gaps = 33/268 (12%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRA 394
           ++LG G               +V +K I ++  + +         V+  ++H NIV++  
Sbjct: 15  DVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDD 74

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA 454
                  L+L+   +  G L   +                 +L       + +LH     
Sbjct: 75  IYESGGHLYLIMQLVSGGELFDRIVEKG-----FYTERDASRLIFQVLDAVKYLHDLGIV 129

Query: 455 HLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFIND-----AYNAPELKFNNNNNYS 509
           H      +     +D+     ISD G+ ++      ++       Y APE+        +
Sbjct: 130 HRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEV-------LA 182

Query: 510 QRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQDESAWEVFDFELIMDK 568
           Q+ + +  D +S GV+   +L G      + +  + + +            ++F+     
Sbjct: 183 QKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILK--------AEYEFDSPYWD 234

Query: 569 EMEEEMRALLQVALLCLAPLPKDRPNMS 596
           ++ +  +  ++     +   P+ R    
Sbjct: 235 DISDSAKDFIR---HLMEKDPEKRFTCE 259

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  112 bits (281), Expect = 3e-28
 Identities = 48/277 (17%), Positives = 99/277 (35%), Gaps = 39/277 (14%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR--------ERKKKREVDEWLRVIGGLR---- 385
           E+LG+G      + +         VK I           + +   +  L+ +  LR    
Sbjct: 9   EILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSG 68

Query: 386 HSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGL 445
           H NI+ ++         FLV+D +  G L   L       ++ +   +  K+     + +
Sbjct: 69  HPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLT-----EKVTLSEKETRKIMRALLEVI 123

Query: 446 AFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-----TPFFINDAYNAPEL 500
             LH   K ++ H  L   NI++D   N  ++D G                  +Y APE+
Sbjct: 124 CALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEI 180

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQDESAWEV 559
               + N +   + +  D++S GV++  +L G        ++ +++ +            
Sbjct: 181 -IECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMS--------GN 231

Query: 560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMS 596
           + F      +  + ++ L+      L   P+ R    
Sbjct: 232 YQFGSPEWDDYSDTVKDLVS---RFLVVQPQKRYTAE 265

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  113 bits (284), Expect = 5e-28
 Identities = 52/281 (18%), Positives = 98/281 (34%), Gaps = 40/281 (14%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEW--------LRVIGGLRHSNI 389
            ++G+G  G  Y     D G +  +K + +++ K +  E         L ++       I
Sbjct: 10  RIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFI 69

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH 449
           V +    +  D+L  + D +  G LH  L                   A++   GL  +H
Sbjct: 70  VCMSYAFHTPDKLSFILDLMNGGDLHYHLS-----QHGVFSEADMRFYAAEIILGLEHMH 124

Query: 450 GYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH----TPFFINDAYNAPELKFNNN 505
                 + +  L  +NI++D+ G+  ISD+G+   F             Y APE+     
Sbjct: 125 ---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEV-LQKG 180

Query: 506 NNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI 565
             Y         D +S G +L ++L G       +           + E         + 
Sbjct: 181 VAYD-----SSADWFSLGCMLFKLLRGHSPFRQHK--------TKDKHEIDRMTLTMAVE 227

Query: 566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR 606
           +      E+R+LL+     L      R     + R  ++++
Sbjct: 228 LPDSFSPELRSLLE---GLLQRDVNRRL--GCLGRGAQEVK 263

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-27
 Identities = 55/290 (18%), Positives = 103/290 (35%), Gaps = 37/290 (12%)

Query: 339 ELLGKGCVGATYKVVLDG------GDVVVVKRIRERKKKREVDEWLRVIGGL----RHSN 388
           + LG+G  G   +    G         V VK ++E     E    +  +  L     H N
Sbjct: 19  KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN 78

Query: 389 IVSIRAYCNGKDE-LFLVYDYLPHGSLHSLLHGSRGP-----------GRMPVDWNKRLK 436
           +V++   C      L ++ ++   G+L + L   R              +  +     + 
Sbjct: 79  VVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLIC 138

Query: 437 LASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGV-HQLFHTPFFINDAY 495
            +   AKG+ FL         H  L++ NI++ +     I D G+   ++  P ++    
Sbjct: 139 YSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGD 195

Query: 496 NAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDES 555
               LK+        R +  + DV+SFGV+L EI +   +   G     ++ + + +   
Sbjct: 196 ARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT- 254

Query: 556 AWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
                   +        EM    Q  L C    P  RP  S +   + ++
Sbjct: 255 -------RMRAPDYTTPEMY---QTMLDCWHGEPSQRPTFSELVEHLGNL 294

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 3e-27
 Identities = 64/301 (21%), Positives = 112/301 (37%), Gaps = 49/301 (16%)

Query: 339 ELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCN 397
           +++G G  G  Y+  L D G++V +K++   + KR  +  L+++  L H NIV +R +  
Sbjct: 26  KVIGNGSFGVVYQAKLCDSGELVAIKKVL--QDKRFKNRELQIMRKLDHCNIVRLRYFFY 83

Query: 398 GKDE------LFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY 451
              E      L LV DY+P        H SR    +P              + LA++H  
Sbjct: 84  SSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLP--VIYVKLYMYQLFRSLAYIH-- 139

Query: 452 NKAHLFHGHLSSSNIVVDQLGNAC-ISDIGVHQLF-----HTPFFINDAYNAPELKFNNN 505
               + H  +   N+++D       + D G  +       +  +  +  Y APEL F   
Sbjct: 140 -SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGAT 198

Query: 506 NNYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELG-IVKWVQMMGQDESAW------ 557
                  +    DV+S G VL E+L G+    GD  +  +V+ ++++G            
Sbjct: 199 ------DYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNP 252

Query: 558 ----------EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMS--IVHRMIEDI 605
                     +   +  +       E  AL       L   P  R        H   +++
Sbjct: 253 NYTEFKFPQIKAHPWTKVFRPRTPPEAIALCS---RLLEYTPTARLTPLEACAHSFFDEL 309

Query: 606 R 606
           R
Sbjct: 310 R 310

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 9e-27
 Identities = 51/283 (18%), Positives = 98/283 (34%), Gaps = 43/283 (15%)

Query: 339 ELLGKGCVGATYKVVL--DGGDV---VVVKRIRERKKKREVDEWLR---VIGGLRHSNIV 390
           ++LG G  G  YK +   +G  V   V +K +RE    +   E L    V+  + + ++ 
Sbjct: 15  KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVC 74

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
            +   C     + L+   +P G L   +   +      +     L      AKG+ +L  
Sbjct: 75  RLLGICL-TSTVQLITQLMPFGCLLDYVREHKD----NIGSQYLLNWCVQIAKGMNYLE- 128

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH--------TPFFINDAYNAPELKF 502
                L H  L++ N++V    +  I+D G+ +L              +   + A E   
Sbjct: 129 --DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALES-- 184

Query: 503 NNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF 562
                   R +  + DV+S+GV + E++T      DG        ++    E        
Sbjct: 185 -----ILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI----PASEISSILEK-----GE 230

Query: 563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
            L        ++  ++   + C       RP    +      +
Sbjct: 231 RLPQPPICTIDVYMIM---VKCWMIDADSRPKFRELIIEFSKM 270

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  105 bits (262), Expect = 1e-25
 Identities = 38/284 (13%), Positives = 89/284 (31%), Gaps = 37/284 (13%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCN 397
             +G G  G  Y    +  G+ V +K    + K  ++    ++   ++    +    +C 
Sbjct: 13  RKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCG 72

Query: 398 GKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLF 457
            + +  ++   L   SL  L +               L LA      + ++H     +  
Sbjct: 73  AEGDYNVMVMELLGPSLEDLFNFCSR----KFSLKTVLLLADQMISRIEYIH---SKNFI 125

Query: 458 HGHLSSSNIVV---DQLGNACISDIGVHQLFH-------------TPFFINDAYNAPELK 501
           H  +   N ++    +     I D G+ + +                      Y +    
Sbjct: 126 HRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINT- 184

Query: 502 FNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFD 561
                 +   +  +R D+ S G VL+    G +     +       +   +  S  ++  
Sbjct: 185 ------HLGIEQSRRDDLESLGYVLMYFNLGSL---PWQGLKAATKRQKYERISEKKMST 235

Query: 562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
              ++ K    E    L     C +    D+P+ S + ++  ++
Sbjct: 236 PIEVLCKGYPSEFATYLN---FCRSLRFDDKPDYSYLRQLFRNL 276

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  104 bits (261), Expect = 1e-25
 Identities = 36/288 (12%), Positives = 83/288 (28%), Gaps = 43/288 (14%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLRVIGGLRH-SNIVSIRAYC 396
             +G+G  G  ++   L     V +K    R    ++ +  R    L   + I ++  + 
Sbjct: 11  RRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFG 70

Query: 397 NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHL 456
                  LV D L       L    R               A      +  +H   +  L
Sbjct: 71  QEGLHNVLVIDLLGPSLEDLLDLCGR-----KFSVKTVAMAAKQMLARVQSIH---EKSL 122

Query: 457 FHGHLSSSNIVVDQL-----GNACISDIGVHQLFHTPFFIND-------------AYNAP 498
            +  +   N ++ +          + D G+ + +  P                   Y + 
Sbjct: 123 VYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSI 182

Query: 499 ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQDESAW 557
                    +  R+  +R D+ + G V +  L G +  +G       +  + +G+ + + 
Sbjct: 183 NT-------HLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQST 235

Query: 558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI 605
            + +    +     EE    +              P+   +  +   +
Sbjct: 236 PLRE----LCAGFPEEFYKYMH---YARNLAFDATPDYDYLQGLFSKV 276

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 2e-25
 Identities = 55/271 (20%), Positives = 97/271 (35%), Gaps = 44/271 (16%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR------ERKKKREVDEWLRVIGGLRHSNIVS 391
           ++LGKG  G  +            +K ++      +   +  + E   +     H  +  
Sbjct: 8   KMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTH 67

Query: 392 IRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY 451
           +      K+ LF V +YL  G L   +           D ++    A++   GL FLH  
Sbjct: 68  MFCTFQTKENLFFVMEYLNGGDLMYHIQSCH-----KFDLSRATFYAAEIILGLQFLH-- 120

Query: 452 NKAHLFHGHLSSSNIVVDQLGNACISDIGV------HQLFHTPFFINDAYNAPELKFNNN 505
               + +  L   NI++D+ G+  I+D G+             F     Y APE+     
Sbjct: 121 -SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQK 179

Query: 506 NNYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQDESAWEVFDFEL 564
            N+         D +SFGV+L E+L G+    G  E  +   ++M               
Sbjct: 180 YNH-------SVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMD------------NP 220

Query: 565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNM 595
              + +E+E + LL          P+ R  +
Sbjct: 221 FYPRWLEKEAKDLLV---KLFVREPEKRLGV 248

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  101 bits (252), Expect = 2e-24
 Identities = 51/275 (18%), Positives = 97/275 (35%), Gaps = 46/275 (16%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRER--KKKREVDEWLR---VIGGLRHSNIVSI 392
           E+LG G +   +    L     V VK +R    +       + R       L H  IV++
Sbjct: 13  EILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAV 72

Query: 393 RAYCNGKDE----LFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFL 448
                 +       ++V +Y+   +L  ++H        P+   + +++ +D+ + L F 
Sbjct: 73  YDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEG-----PMTPKRAIEVIADACQALNFS 127

Query: 449 HGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFIND---------AYNAPE 499
           H   +  + H  +  +NI++       + D G+ +                    Y +PE
Sbjct: 128 H---QNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPE 184

Query: 500 LKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQDESAWE 558
                           R DVYS G VL E+LTG+    GD  + +              E
Sbjct: 185 Q-------ARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQH--------VRE 229

Query: 559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRP 593
                    + +  ++ A++      LA  P++R 
Sbjct: 230 DPIPPSARHEGLSADLDAVVL---KALAKNPENRY 261

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (248), Expect = 9e-24
 Identities = 59/300 (19%), Positives = 112/300 (37%), Gaps = 49/300 (16%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWL----RVIGGLRHSNIVSIR 393
           E +G+G  G  YK      G+VV +K+IR   +   V         ++  L H NIV + 
Sbjct: 8   EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLL 67

Query: 394 AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNK 453
              + +++L+LV+++L       +   +       +             +GLAF H    
Sbjct: 68  DVIHTENKLYLVFEFLHQDLKKFMDASALT----GIPLPLIKSYLFQLLQGLAFCH---S 120

Query: 454 AHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP------FFINDAYNAPELKFNNNNN 507
             + H  L   N++++  G   ++D G+ + F  P        +   Y APE+       
Sbjct: 121 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGC--- 177

Query: 508 YSQRKFWQRCDVYSFGVVLLEILTG--------------KMAKGDGELGIVKWVQMMGQD 553
              + +    D++S G +  E++T               ++ +  G    V W  +    
Sbjct: 178 ---KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMP 234

Query: 554 E-----SAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIV--HRMIEDIR 606
           +       W   DF  ++   ++E+ R+LL      L   P  R +      H   +D+ 
Sbjct: 235 DYKPSFPKWARQDFSKVV-PPLDEDGRSLLS---QMLHYDPNKRISAKAALAHPFFQDVT 290

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.7 bits (245), Expect = 2e-23
 Identities = 50/291 (17%), Positives = 95/291 (32%), Gaps = 47/291 (16%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR--------VIGGLRHSNI 389
           E LG G      K      G     K I++R+ K       R        ++  ++H N+
Sbjct: 16  EELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNV 75

Query: 390 VSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLH 449
           +++      K ++ L+ + +  G L   L       +  +   +  +       G+ +LH
Sbjct: 76  ITLHEVYENKTDVILILELVAGGELFDFLA-----EKESLTEEEATEFLKQILNGVYYLH 130

Query: 450 GYNKAHLFHGHLSSSNIVVDQLG----NACISDIGVHQLF-----HTPFFINDAYNAPEL 500
                 + H  L   NI++           I D G+             F    + APE+
Sbjct: 131 ---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEI 187

Query: 501 KFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQDESAWEV 559
                   +        D++S GV+   +L+G     GD +   +  V  +         
Sbjct: 188 -------VNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAV--------N 232

Query: 560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIV--HRMIEDIRTK 608
           ++FE           +  ++     L   PK R  +     H  I+   T+
Sbjct: 233 YEFEDEYFSNTSALAKDFIR---RLLVKDPKKRMTIQDSLQHPWIKPKDTQ 280

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (244), Expect = 3e-23
 Identities = 49/286 (17%), Positives = 99/286 (34%), Gaps = 42/286 (14%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEW-------LRVIGGLRHSNIV 390
           + LG+G     YK    +   +V +K+I+   +    D         ++++  L H NI+
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63

Query: 391 SIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
            +      K  + LV+D++       +   S       +  +        + +GL +LH 
Sbjct: 64  GLLDAFGHKSNISLVFDFMETDLEVIIKDNSL-----VLTPSHIKAYMLMTLQGLEYLH- 117

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDA------YNAPELKFNN 504
             +  + H  L  +N+++D+ G   ++D G+ + F +P            Y APEL    
Sbjct: 118 --QHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPEL-LFG 174

Query: 505 NNNYSQRKFWQRCDVYSFGVVLLEILTG--------------KMAKGDGELGIVKWVQMM 550
              Y         D+++ G +L E+L                ++ +  G     +W  M 
Sbjct: 175 ARMYG-----VGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMC 229

Query: 551 GQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMS 596
              +         + +          LL +        P  R   +
Sbjct: 230 SLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITAT 275

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.5 bits (242), Expect = 4e-23
 Identities = 47/286 (16%), Positives = 92/286 (32%), Gaps = 51/286 (17%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERK--KKREVDEWLRVIG--------GLRHS 387
            LLG G  G+ Y  + +     V +K + + +     E+    RV              S
Sbjct: 10  PLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFS 69

Query: 388 NIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAF 447
            ++ +  +    D   L+ +              RG     +             + +  
Sbjct: 70  GVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG----ALQEELARSFFWQVLEAVRH 125

Query: 448 LHGYNKAHLFHGHLSSSNIVVDQ-LGNACISDIGVHQLFHTPFFIN----DAYNAPELKF 502
            H      + H  +   NI++D   G   + D G   L     + +      Y+ PE   
Sbjct: 126 CH---NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIR 182

Query: 503 NNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF 562
                   R   +   V+S G++L +++ G +     E                 E+   
Sbjct: 183 Y------HRYHGRSAAVWSLGILLYDMVCGDIPFEHDE-----------------EIIRG 219

Query: 563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIV--HRMIEDIR 606
           ++   + +  E + L++    CLA  P DRP    +  H  ++D+ 
Sbjct: 220 QVFFRQRVSSECQHLIR---WCLALRPSDRPTFEEIQNHPWMQDVL 262

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.6 bits (242), Expect = 6e-23
 Identities = 57/301 (18%), Positives = 103/301 (34%), Gaps = 46/301 (15%)

Query: 339 ELLGKGCVGATYKV--VLDGGDVVVVKRIR--------ERKKKREVDEWLRVIGGLRHSN 388
             +G+G  G  +K   + +GG  V +KR+R             REV   LR +    H N
Sbjct: 13  AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAV-LRHLETFEHPN 71

Query: 389 IVSIRAYC-----NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAK 443
           +V +   C     + + +L LV++++       L           V       +     +
Sbjct: 72  VVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPG----VPTETIKDMMFQLLR 127

Query: 444 GLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFN 503
           GL FLH      + H  L   NI+V   G   ++D G+ +++     +          + 
Sbjct: 128 GLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLW--YR 182

Query: 504 NNNNYSQRKFWQRCDVYSFGVVLLEILTG--------------KMAKGDGELGIVKWVQM 549
                 Q  +    D++S G +  E+                 K+    G  G   W + 
Sbjct: 183 APEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRD 242

Query: 550 MGQDESAWEVFDFELIMD--KEMEEEMRALLQVALLCLAPLPKDRPNMSIV--HRMIEDI 605
           +     A+     + I     +++E  + LL     CL   P  R +      H   +D+
Sbjct: 243 VALPRQAFHSKSAQPIEKFVTDIDELGKDLLL---KCLTFNPAKRISAYSALSHPYFQDL 299

Query: 606 R 606
            
Sbjct: 300 E 300

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 95.7 bits (237), Expect = 2e-22
 Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 33/280 (11%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWL----RVIGGLRHSNIVSIRA 394
           E +G+G  G  YK   + G+   +K+IR  K+   +         ++  L+HSNIV +  
Sbjct: 8   EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYD 67

Query: 395 YCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA 454
             + K  L LV+++L       L           ++             G+A+ H     
Sbjct: 68  VIHTKKRLVLVFEHLDQDLKKLLDVCEG-----GLESVTAKSFLLQLLNGIAYCH---DR 119

Query: 455 HLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFW 514
            + H  L   N+++++ G   I+D G+ + F  P                +     +K+ 
Sbjct: 120 RVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYS 179

Query: 515 QRCDVYSFGVVLLEILTG--------------KMAKGDGELGIVKWVQMMGQDESAWEVF 560
              D++S G +  E++ G              ++ +  G      W  +    +      
Sbjct: 180 TTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFT 239

Query: 561 DFELI----MDKEMEEEMRALLQVALLCLAPLPKDRPNMS 596
            +E +      K ++E    LL      L   P  R    
Sbjct: 240 VYEPLPWESFLKGLDESGIDLLS---KMLKLDPNQRITAK 276

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 96.3 bits (239), Expect = 2e-22
 Identities = 50/277 (18%), Positives = 101/277 (36%), Gaps = 40/277 (14%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR-----ERKKKREVDEWLRVIGGLRHSNIVSI 392
             LG G  G  + +     G    +K ++       K+    ++   ++  + H  I+ +
Sbjct: 10  RTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRM 69

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
                   ++F++ DY+  G L SLL                   A++    L +LH   
Sbjct: 70  WGTFQDAQQIFMIMDYIEGGELFSLLR-----KSQRFPNPVAKFYAAEVCLALEYLH--- 121

Query: 453 KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFI---NDAYNAPELKFNNNNNYS 509
              + +  L   NI++D+ G+  I+D G  +      +       Y APE+        S
Sbjct: 122 SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEV-------VS 174

Query: 510 QRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKE 569
            + + +  D +SFG+++ E+L G     D               ++  ++ + EL     
Sbjct: 175 TKPYNKSIDWWSFGILIYEMLAGYTPFYD-----------SNTMKTYEKILNAELRFPPF 223

Query: 570 MEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR 606
             E+++ LL      +      R     +    ED++
Sbjct: 224 FNEDVKDLLS---RLITRDLSQRLGN--LQNGTEDVK 255

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.3 bits (236), Expect = 7e-22
 Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 32/212 (15%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLR---VIGGLRHSNIVSIRA 394
             +G+G  G             V +K+I   + +      LR   ++   RH NI+ I  
Sbjct: 14  SYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGIND 73

Query: 395 YCNGKD----ELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHG 450
                     +   +  +L    L+ LL          +  +          +GL ++H 
Sbjct: 74  IIRAPTIEQMKDVYLVTHLMGADLYKLLK------TQHLSNDHICYFLYQILRGLKYIH- 126

Query: 451 YNKAHLFHGHLSSSNIVVDQLGNACISDIGV---------HQLFHTPFFINDAYNAPELK 501
              A++ H  L  SN++++   +  I D G+         H  F T +     Y APE+ 
Sbjct: 127 --SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIM 184

Query: 502 FNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
            N+        + +  D++S G +L E+L+ +
Sbjct: 185 LNSKG------YTKSIDIWSVGCILAEMLSNR 210

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.4 bits (226), Expect = 9e-21
 Identities = 56/282 (19%), Positives = 103/282 (36%), Gaps = 35/282 (12%)

Query: 339 ELLGKGCVGATYKVVL----DGGDVVVVKRIRERK---KKREVDEWLR---VIGGLRHS- 387
           ++LG G  G  + V      D G +  +K +++     K +  +       V+  +R S 
Sbjct: 30  KVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSP 89

Query: 388 NIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAF 447
            +V++      + +L L+ DY+  G L + L       R     ++      +    L  
Sbjct: 90  FLVTLHYAFQTETKLHLILDYINGGELFTHLSQ-----RERFTEHEVQIYVGEIVLALEH 144

Query: 448 LHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF--HTPFFINDAYNAPELKFNNN 505
           LH   K  + +  +   NI++D  G+  ++D G+ + F         D     E    + 
Sbjct: 145 LH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDI 201

Query: 506 NNYSQRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQDESAWEVFDFEL 564
                    +  D +S GV++ E+LTG      DGE      +           +   E 
Sbjct: 202 VRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISR--------RILKSEP 253

Query: 565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR 606
              +EM    + L+Q     L   PK R       R  ++I+
Sbjct: 254 PYPQEMSALAKDLIQ---RLLMKDPKKRL--GCGPRDADEIK 290

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.4 bits (226), Expect = 1e-20
 Identities = 59/303 (19%), Positives = 111/303 (36%), Gaps = 53/303 (17%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR-----ERKKKREVDEWLRVIGGLRHSNIVSI 392
           + +G G  GA    V    G  V +K++      E   KR   E LR++  +RH N++ +
Sbjct: 24  QPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRE-LRLLKHMRHENVIGL 82

Query: 393 RAYCNGKD------ELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLA 446
                  +      + +LV  ++       + H         +  ++   L     KGL 
Sbjct: 83  LDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHE-------KLGEDRIQFLVYQMLKGLR 135

Query: 447 FLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH---TPFFINDAYNAPELKFN 503
           ++H    A + H  L   N+ V++     I D G+ +      T + +   Y APE+  N
Sbjct: 136 YIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILN 192

Query: 504 NNNNYSQRKFWQRCDVYSFGVVLLEILTGK--------------MAKGDGELGIVKWVQM 549
                   ++ Q  D++S G ++ E++TGK              + K  G     ++VQ 
Sbjct: 193 ------WMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPA-EFVQR 245

Query: 550 MGQDESAWEVFDFELIMDKEMEEEMRALLQVAL----LCLAPLPKDRPNMSIV--HRMIE 603
           +  DE+   +     +  K+    +     +A+      L    + R        H   E
Sbjct: 246 LQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFE 305

Query: 604 DIR 606
            + 
Sbjct: 306 SLH 308

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.8 bits (214), Expect = 4e-19
 Identities = 46/274 (16%), Positives = 95/274 (34%), Gaps = 31/274 (11%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERK--KKREVDEWLR---VIGGLRHSNIVSI 392
           +LLGKG  G    V     G    +K +R+     K EV   +    V+   RH  + ++
Sbjct: 11  KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTAL 70

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
           +      D L  V +Y   G L   L              +     ++    L +LH   
Sbjct: 71  KYAFQTHDRLCFVMEYANGGELFFHLS-----RERVFTEERARFYGAEIVSALEYLH--- 122

Query: 453 KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRK 512
              + +  +   N+++D+ G+  I+D G+ +   +       +     ++          
Sbjct: 123 SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGT-PEYLAPEVLEDND 181

Query: 513 FWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKEMEE 572
           + +  D +  GVV+ E++ G++   +              +     +   E+   + +  
Sbjct: 182 YGRAVDWWGLGVVMYEMMCGRLPFYN-----------QDHERLFELILMEEIRFPRTLSP 230

Query: 573 EMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR 606
           E ++LL      L   PK R          +++ 
Sbjct: 231 EAKSLLA---GLLKKDPKQRL--GGGPSDAKEVM 259

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (211), Expect = 5e-19
 Identities = 49/287 (17%), Positives = 95/287 (33%), Gaps = 45/287 (15%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWL----RVIGGLRHSNIVSIR 393
           E +G+G  G  +K    +  ++V +KR+R       V         ++  L+H NIV + 
Sbjct: 8   EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLH 67

Query: 394 AYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNK 453
              +   +L LV+++                    +D            KGL F H  N 
Sbjct: 68  DVLHSDKKLTLVFEFCDQDLKKYFDSC-----NGDLDPEIVKSFLFQLLKGLGFCHSRN- 121

Query: 454 AHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-----FFINDAYNAPELKFNNNNNY 508
             + H  L   N+++++ G   +++ G+ + F  P       +   +  P         Y
Sbjct: 122 --VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLY 179

Query: 509 SQRKFWQRCDVYSFGVVLLEILTG---------------KMAKGDGELGIVKWVQMMG-- 551
           S        D++S G +  E+                  ++ +  G     +W  M    
Sbjct: 180 STS-----IDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLP 234

Query: 552 --QDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMS 596
             +    +      + +  ++    R LLQ     L   P  R +  
Sbjct: 235 DYKPYPMYPATTSLVNVVPKLNATGRDLLQ---NLLKCNPVQRISAE 278

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 86.0 bits (211), Expect = 6e-19
 Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 14/199 (7%)

Query: 17  LCLSNSPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPST--HRVIKLV 74
           LC       D   LL  K  +   + +LSSW+ +TD C  +W GV C+  T  +RV  L 
Sbjct: 2   LCNP----QDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLD 56

Query: 75  LEDLDLTGPAEV---LSRLTQLR--LLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGT 129
           L  L+L  P  +   L+ L  L    +   NNL+      ++    L +LY++H   +G 
Sbjct: 57  LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116

Query: 130 FPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRS- 188
            P  +S ++ L  +D S+NA  G +P   ++ LPNL+ +  + NR +G +     S    
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175

Query: 189 ILDFNVSNNQLSGQIPAWM 207
                +S N+L+G+IP   
Sbjct: 176 FTSMTISRNRLTGKIPPTF 194

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.5 bits (137), Expect = 1e-09
 Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 163 PNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAW--MSPFGGSSFAGNKN 220
            NL  L L +NR  GTL    +  + +   NVS N L G+IP    +  F  S++A NK 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303

Query: 221 LCGRPLPSDCS 231
           LCG PLP+ C+
Sbjct: 304 LCGSPLPA-CT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.9 bits (133), Expect = 4e-09
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 113 WPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLED 172
             +L  L L +NR  GT P G++ L+ L  +++S N   GEIP  +   L         +
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP--QGGNLQRFDVSAYAN 300

Query: 173 NRF 175
           N+ 
Sbjct: 301 NKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.9 bits (107), Expect = 8e-06
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 100 NNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN 148
           N +  +    L+    L  L +S N   G  P G  +L+       ++N
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.5 bits (208), Expect = 3e-18
 Identities = 44/278 (15%), Positives = 96/278 (34%), Gaps = 42/278 (15%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERK--KKREVDEWLR---VIGGLRHSNIVSI 392
           + LG G  G    V   + G+   +K + ++K  K ++++  L    ++  +    +V +
Sbjct: 47  KTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 106

Query: 393 RAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN 452
                    L++V +Y+  G + S L                   A+       +LH   
Sbjct: 107 EFSFKDNSNLYMVMEYVAGGEMFSHLRRIG-----RFSEPHARFYAAQIVLTFEYLH--- 158

Query: 453 KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFIND---AYNAPELKFNNNNNYS 509
              L +  L   N+++DQ G   ++D G  +      +         APE+         
Sbjct: 159 SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEI-------IL 211

Query: 510 QRKFWQRCDVYSFGVVLLEILTGKMA-KGDGELGIVKWVQMMGQDESAWEVFDFELIMDK 568
            + + +  D ++ GV++ E+  G      D  + I + +               ++    
Sbjct: 212 SKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG------------KVRFPS 259

Query: 569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR 606
               +++ LL+     L      R     +   + DI+
Sbjct: 260 HFSSDLKDLLR---NLLQVDLTKRFGN--LKNGVNDIK 292

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.8 bits (206), Expect = 3e-18
 Identities = 41/295 (13%), Positives = 106/295 (35%), Gaps = 47/295 (15%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEW----LRVIGGLRHSNIVSIR 393
             +G+G  G  +K      G  V +K++    +K          ++++  L+H N+V++ 
Sbjct: 16  AKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLI 75

Query: 394 AYC--------NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGL 445
             C          K  ++LV+D+  H     L +      +  +   KR+         L
Sbjct: 76  EICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNV---LVKFTLSEIKRV-----MQMLL 127

Query: 446 AFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF----HTPFFINDAYNAPELK 501
             L+  ++  + H  + ++N+++ + G   ++D G+ + F    ++              
Sbjct: 128 NGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWY 187

Query: 502 FNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK--------------MAKGDGELGIVKWV 547
                   +R +    D++  G ++ E+ T                +++  G +    W 
Sbjct: 188 RPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWP 247

Query: 548 QMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALL------CLAPLPKDRPNMS 596
            +   +   +E  +      +++++ ++A ++           L   P  R +  
Sbjct: 248 NV--DNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSD 300

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 76.8 bits (188), Expect = 8e-16
 Identities = 32/199 (16%), Positives = 71/199 (35%), Gaps = 16/199 (8%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCN 397
             LG+G     ++ + +   + VVVK ++  KKK+   E   +       NI+++     
Sbjct: 41  RKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVK 100

Query: 398 GKDE--LFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAH 455
                   LV++++ +     L           +          +  K L + H      
Sbjct: 101 DPVSRTPALVFEHVNNTDFKQLYQ--------TLTDYDIRFYMYEILKALDYCH---SMG 149

Query: 456 LFHGHLSSSNIVVD-QLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFW 514
           + H  +   N+++D +     + D G+ + +H     N    +   K         + + 
Sbjct: 150 IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLV-DYQMYD 208

Query: 515 QRCDVYSFGVVLLEILTGK 533
              D++S G +L  ++  K
Sbjct: 209 YSLDMWSLGCMLASMIFRK 227

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (185), Expect = 2e-15
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 30/209 (14%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR-----ERKKKREVDEWLRVIGGLRHSNIVSI 392
             +G G  G+         G  V VK++          KR   E LR++  ++H N++ +
Sbjct: 24  SPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-LRLLKHMKHENVIGL 82

Query: 393 RAYCNGKDEL-----FLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAF 447
                    L       +  +L    L++++          +  +    L     +GL +
Sbjct: 83  LDVFTPARSLEEFNDVYLVTHLMGADLNNIVK------CQKLTDDHVQFLIYQILRGLKY 136

Query: 448 LHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF---HTPFFINDAYNAPELKFNN 504
           +H    A + H  L  SN+ V++     I D G+ +      T +     Y APE+  N 
Sbjct: 137 IH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLN- 192

Query: 505 NNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
                   + Q  D++S G ++ E+LTG+
Sbjct: 193 -----WMHYNQTVDIWSVGCIMAELLTGR 216

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 5e-14
 Identities = 38/207 (18%), Positives = 73/207 (35%), Gaps = 26/207 (12%)

Query: 339 ELLGKGCVGATYKVV-LDGGDVVVVKRIR-----ERKKKREVDEWLRVIGGLRHSNIVSI 392
           + +G G  G             V +K++      +   KR   E L ++  + H NI+S+
Sbjct: 23  KPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRE-LVLMKCVNHKNIISL 81

Query: 393 RAYCNGKD------ELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLA 446
                 +       +++LV + +       +        +M +D  +   L      G+ 
Sbjct: 82  LNVFTPQKTLEEFQDVYLVMELMDANLCQVI--------QMELDHERMSYLLYQMLCGIK 133

Query: 447 FLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPELKFNNNN 506
            LH      + H  L  SNIVV       I D G+ +   T F +         +     
Sbjct: 134 HLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYR--APE 188

Query: 507 NYSQRKFWQRCDVYSFGVVLLEILTGK 533
                 + +  D++S G ++ E++  K
Sbjct: 189 VILGMGYKENVDIWSVGCIMGEMVRHK 215

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.8 bits (164), Expect = 1e-12
 Identities = 29/224 (12%), Positives = 75/224 (33%), Gaps = 21/224 (9%)

Query: 329 NVGDLLKSS----AELLGKGCVGATYKVV-LDGGDVVVVKRIRERKKKREV--------- 374
             G+  K +       LG G     +    +     V +K +R  K   E          
Sbjct: 5   FKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQ 64

Query: 375 ---DEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDW 431
              D        +  ++I+ +  + N K    +    +      +LL   +      +  
Sbjct: 65  RVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPL 124

Query: 432 NKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG-NACISDIGVHQLFHTPFF 490
               +++     GL ++H   +  + H  +   N++++ +     +  I +  L +  ++
Sbjct: 125 IYVKQISKQLLLGLDYMH--RRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWY 182

Query: 491 INDAYNAP-ELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK 533
                N+    ++ +        +    D++S   ++ E++TG 
Sbjct: 183 DEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGD 226

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 64.3 bits (155), Expect = 2e-11
 Identities = 27/152 (17%), Positives = 65/152 (42%), Gaps = 14/152 (9%)

Query: 8   FFSFFCLFSLCLSNSPYSDISTL----------LSFKASVTGSSDSLSSWVNSTDPCFDS 57
             S   L  L L+N+  S+++ L          L        S  +  + + + +   + 
Sbjct: 237 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 296

Query: 58  WRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLK 117
              ++   +   +  L L   +++  +  +S LT+L+ L   NN +S  + +L++  ++ 
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNIN 354

Query: 118 HLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNA 149
            L   HN+ +   P  +++L  + ++ L+  A
Sbjct: 355 WLSAGHNQISDLTP--LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.4 bits (145), Expect = 2e-10
 Identities = 36/178 (20%), Positives = 60/178 (33%), Gaps = 27/178 (15%)

Query: 47  WVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSS 106
            + S     +    +T       + +L L    L      L+ LT L  L L NN +S+ 
Sbjct: 198 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNL 256

Query: 107 NLNLSSWPHLKHLYLSHNRFTGTFPSGVSS--------------------LRHLRRVDLS 146
              LS    L  L L  N+ +   P    +                    L++L  + L 
Sbjct: 257 -APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 315

Query: 147 HNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP 204
            N      P   ++ L  L  L   +N+ +      N ++ + L     +NQ+S   P
Sbjct: 316 FNNISDISP---VSSLTKLQRLFFANNKVSDVSSLANLTNINWLS--AGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.5 bits (122), Expect = 2e-07
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 113 WPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLED 172
             +L +L L  N  +   P  VSSL  L+R+  ++N       ++ L  L N+  L    
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGH 360

Query: 173 NRFTGTLYSVNSSSRSILDFNVSNN 197
           N+ +      N +  + L   +++ 
Sbjct: 361 NQISDLTPLANLTRITQLG--LNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 8e-05
 Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 26/137 (18%)

Query: 88  SRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH 147
           ++LT L  L   NN +S     L    +L  L L+ N+        ++SL +L  +DL++
Sbjct: 194 AKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 250

Query: 148 NAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDF--------------- 192
           N      P   L+ L  L  L+L  N+ +        ++ + L+                
Sbjct: 251 NQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLK 307

Query: 193 -----NVSNNQLSGQIP 204
                 +  N +S   P
Sbjct: 308 NLTYLTLYFNNISDISP 324

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 90  LTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNA 149
           L +     L    ++ + ++ +    +  L             GV  L +L +++ S+N 
Sbjct: 21  LAEKMKTVLGKTNVTDT-VSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQ 77

Query: 150 YEGEIPMTELTRLPNL 165
                P+  LT+L ++
Sbjct: 78  LTDITPLKNLTKLVDI 93

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.2 bits (127), Expect = 3e-09
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 73  LVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPS 132
           L L   DLT     L +L  +  L L +N L +    L++   L+ L  S N        
Sbjct: 3   LHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE--NVD 59

Query: 133 GVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTG 177
           GV++L  L+ + L +N  +    +  L   P L+ L L+ N    
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 117 KHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT 176
           + L+L+H   T      +  L  +  +DLSHN      P   L  L  L  L+  DN   
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP--ALAALRCLEVLQASDNALE 56

Query: 177 GTLYSVNSSSRSILDFNVSNNQLSG 201
                 N      L     NN+L  
Sbjct: 57  NVDGVANLPRLQELLL--CNNRLQQ 79

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (124), Expect = 7e-08
 Identities = 19/132 (14%), Positives = 37/132 (28%), Gaps = 6/132 (4%)

Query: 106 SNLNLSSWP-----HLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELT 160
           S+L L   P         L L +N+ T        +L++L  + L +N      P     
Sbjct: 18  SDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FA 76

Query: 161 RLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKN 220
            L  L  L L  N+       +  + + +        ++   +   ++         N  
Sbjct: 77  PLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 136

Query: 221 LCGRPLPSDCSN 232
                       
Sbjct: 137 KSSGIENGAFQG 148

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 5/168 (2%)

Query: 45  SSWVNSTDPCFDSWRGVTCNPSTHRVIKLVLEDLDLTG-PAEVLSRLTQLRLLSLKNNLL 103
                  +      + V    +   V++L    L  +G        + +L  + + +  +
Sbjct: 103 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 162

Query: 104 SSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLP 163
           ++  +     P L  L+L  N+ T    + +  L +L ++ LS N+    +    L   P
Sbjct: 163 TT--IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTP 219

Query: 164 NLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFG 211
           +L  L L +N+         +  + I    + NN +S        P G
Sbjct: 220 HLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPG 266

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 26/190 (13%)

Query: 53  PCFDSWRGVTCNPSTHRVIKLVLEDLDLTG-PAEVLSRLTQLRLLSLKNNLLSSSNLNLS 111
            C    R V C+            DL L   P ++      L L +  N +    + +  
Sbjct: 7   RCQCHLRVVQCS------------DLGLEKVPKDLPPDTALLDLQN--NKITEIKDGDFK 52

Query: 112 SWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLE 171
           +  +L  L L +N+ +   P   + L  L R+ LS N  + E+P      L  L     E
Sbjct: 53  NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENE 111

Query: 172 DNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSFAGNKNLCGRPLPSDCS 231
             +   ++++   +   +++   +  + SG            +F G K L    + +D +
Sbjct: 112 ITKVRKSVFN-GLNQMIVVELGTNPLKSSGIEN--------GAFQGMKKLSYIRI-ADTN 161

Query: 232 NRTVEPEQPP 241
             T+    PP
Sbjct: 162 ITTIPQGLPP 171

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 48.2 bits (114), Expect = 6e-07
 Identities = 33/197 (16%), Positives = 58/197 (29%), Gaps = 18/197 (9%)

Query: 339 ELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNG 398
           +L+G+G   A +    +     VVK  +      +  +  R  G L  S +    A    
Sbjct: 6   KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEF 65

Query: 399 KDELFL----VYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKA 454
           +    L    V           L+          V      ++     + +A  +     
Sbjct: 66  RALQKLQGLAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFY---HR 122

Query: 455 HLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPFFINDAYNAPEL---KFNNNNNYSQR 511
            + HG LS  N++V + G   I D                    E+      N   Y  R
Sbjct: 123 GIVHGDLSQYNVLVSEEG-IWIIDFPQSVEVGEE-------GWREILERDVRNIITYFSR 174

Query: 512 KFWQRCDVYSFGVVLLE 528
            +    D+ S    +L+
Sbjct: 175 TYRTEKDINSAIDRILQ 191

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 6e-07
 Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 3/106 (2%)

Query: 87  LSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGT--FPSGVSSLRHLRRVD 144
           L       +L+ ++++ ++  +   + P L  L LS+NR        S V    +L+ ++
Sbjct: 38  LVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN 97

Query: 145 LSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSIL 190
           LS N  +      +  +   L  L L+ N  + T    ++   +I 
Sbjct: 98  LSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR 142

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 7e-05
 Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 3/121 (2%)

Query: 85  EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVD 144
            ++S+       +L    L S   +L +      L    +    T      ++  L  ++
Sbjct: 14  LIMSKRYDGSQQALDLKGLRSDP-DLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLN 71

Query: 145 LSHNAYEGEIPMT-ELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQI 203
           LS+N       M+  + + PNL  L L  N               + +  +  N LS   
Sbjct: 72  LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF 131

Query: 204 P 204
            
Sbjct: 132 R 132

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 21/95 (22%), Positives = 29/95 (30%), Gaps = 6/95 (6%)

Query: 80  LTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRH 139
           L    E +  L  L L + +   L   +  +   P+LK L LS N               
Sbjct: 57  LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK 116

Query: 140 LRRVDLSHNAYEGEIPMTE------LTRLPNLLTL 168
           L  + L  N+                 R P LL L
Sbjct: 117 LEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRL 151

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 14/82 (17%)

Query: 90  LTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNA 149
              L  L++ NN L       +  P L+ L  S N      P    +L+ L    + +N 
Sbjct: 283 PPSLEELNVSNNKLIELP---ALPPRLERLIASFNHLA-EVPELPQNLKQL---HVEYN- 334

Query: 150 YEGEIPMTELTRLPNLLT-LRL 170
                P+ E   +P  +  LR+
Sbjct: 335 -----PLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 9/78 (11%)

Query: 100 NNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTEL 159
           N   +         P L+ L +S+N+     P+    L  L     S N    E+P    
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-EVPEL-- 322

Query: 160 TRLPNLLTLRLEDNRFTG 177
               NL  L +E N    
Sbjct: 323 --PQNLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 6e-05
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 75  LEDLDLTGP--AEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPS 132
           LE+L+++     E+ +   +L  L    N L+       +   LK L++ +N     FP 
Sbjct: 286 LEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQN---LKQLHVEYNPLR-EFPD 341

Query: 133 GVSSLRHLR 141
              S+  LR
Sbjct: 342 IPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 10/73 (13%)

Query: 98  LKNNL--LSSSNLNLSSWP----HLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYE 151
           L      L  +NL LSS P    HL+ L  S N  T   P      + L+ + + +N  +
Sbjct: 36  LDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELP---ELPQSLKSLLVDNNNLK 91

Query: 152 GEIPMTELTRLPN 164
               +  L     
Sbjct: 92  ALSDLPPLLEYLG 104

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 3e-05
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 17/91 (18%)

Query: 75  LEDLDL-------TGPAEVLSRLTQLRLLSLKNNLLSSSNLN-----LSSWPHLKHLYLS 122
           ++ LD+          AE+L  L Q +++ L +  L+ +        L   P L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 123 HNRFTGTFPSGVSSL-----RHLRRVDLSHN 148
            N         V          ++++ L + 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 109 NLSSWPHLKHLYLSHNRFTGT----FPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPN 164
                  L+ L+L+    + +      + + +   LR +DLS+N       +  +  +  
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 165 ----LLTLRLEDNRFTG 177
               L  L L D  ++ 
Sbjct: 424 PGCLLEQLVLYDIYWSE 440

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 6e-04
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 13/91 (14%)

Query: 91  TQLRLLSLKNNLLSSSNLN-----LSSWPHLKHLYLSHNRFTGTFPSG-VSSLRH----L 140
           + LR+L L +  +S S+ +     L +   L+ L LS+N          V S+R     L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 141 RRVDLSHNAYEGEIP---MTELTRLPNLLTL 168
            ++ L    +  E+           P+L  +
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 140 LRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTG----TLYSVNSSSRSILDFNVS 195
           ++ +D+             L  L     +RL+D   T      + S    + ++ + N+ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 196 NNQLSGQIPAWMSPFGGSSFAGNKNL 221
           +N+L       +     +     + L
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKL 89

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 5e-05
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 109 NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTL 168
            L++   L  L    N+ +   P  ++SL +L  V L +N      P   L    NL  +
Sbjct: 168 PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP---LANTSNLFIV 222

Query: 169 RLED 172
            L +
Sbjct: 223 TLTN 226

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 2/75 (2%)

Query: 88  SRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH 147
           S++     ++     L++   +L        L+LS N       + +     L +++L  
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 148 NAYEGEIPMTELTRL 162
                      L  L
Sbjct: 65  AELTKLQVDGTLPVL 79

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 14/49 (28%), Positives = 16/49 (32%), Gaps = 1/49 (2%)

Query: 100 NNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN 148
           NNL       L+   +L  L L  N    T P G      L    L  N
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 25/132 (18%), Positives = 40/132 (30%), Gaps = 24/132 (18%)

Query: 100 NNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIP---- 155
           N L +  +       +L HL+L  NR +         L  L R+ L  N      P    
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 156 -------------------MTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSN 196
                                 L  L  L  LRL DN +             +  F  S+
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSS 257

Query: 197 NQLSGQIPAWMS 208
           +++   +P  ++
Sbjct: 258 SEVPCSLPQRLA 269

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 2/67 (2%)

Query: 90  LTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNA 149
             + R L L+   +       ++      +  S N        G   LR L+ + +++N 
Sbjct: 17  AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNNR 74

Query: 150 YEGEIPM 156
                  
Sbjct: 75  ICRIGEG 81

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 5e-04
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 68  HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLN--LSSWPHLKHLYLSHNR 125
             VI        +  P        +++ + L N+++  S L+  LS    L++L L   R
Sbjct: 23  QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 126 FTGTFPSGVSSLRHLRRVDLSHN 148
            +    + ++   +L R++LS  
Sbjct: 83  LSDPIVNTLAKNSNLVRLNLSGC 105

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 1/98 (1%)

Query: 96  LSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIP 155
           L L    L            +       +          S  R ++ +DLS++  E    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTL 63

Query: 156 MTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFN 193
              L++   L  L LE  R +  + +  + + +++  N
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 6e-04
 Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 3/113 (2%)

Query: 116 LKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRF 175
              L  + +         +    +L  + + +  +   + + +L  L  L  L +  +  
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 176 TGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGSSF--AGNKNLCGRPL 226
                     +  +   N+S N L       +          +GN   C   L
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 11/56 (19%)

Query: 110 LSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNL 165
                    L +S  R       G+ +L+ LR     +           L +LP L
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN-----------LKKLPTL 241

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 7/83 (8%)

Query: 96  LSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSS-----LRHLRRVDLSHNAY 150
           LS +         +      L+ L L +N         + +     +  L  ++L+ N +
Sbjct: 255 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

Query: 151 EGEIPMTELTRLPNLLTLRLEDN 173
             E  +  +  +  + + R    
Sbjct: 315 SEEDDV--VDEIREVFSTRGRGE 335

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 69  RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTG 128
             IK  L+   +T      + L  +  +   N+ + S    +   P++  L+L+ N+ T 
Sbjct: 25  ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD 82

Query: 129 TFPSG 133
             P  
Sbjct: 83  IKPLA 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	640
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.86
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.51
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.51
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.47
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.39
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.34
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.29
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.28
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.27
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.23
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.21
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.2
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.18
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.15
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.11
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.11
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.09
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.01
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.99
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.69
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.53
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.28
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.16
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.09
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.08
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.98
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.97
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.9
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.89
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.82
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.32
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	96.8
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.8
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	96.73
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.31
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	95.99
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.16
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	93.88

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-50  Score=402.82  Aligned_cols=244  Identities=23%  Similarity=0.364  Sum_probs=192.2

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHH
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~  416 (640)
                      .+.||+|+||+||+|++.+++.||||+++.. ...+++.+|++++++++|||||+++|+|..++..++|||||++|+|.+
T Consensus        10 ~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~~g~L~~   89 (263)
T d1sm2a_          10 VQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSD   89 (263)
T ss_dssp             EEEEECCSSCCEEEEEETTTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHH
T ss_pred             EEEEeeCCCeEEEEEEECCCCEEEEEEECCCcCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecCCCcHHH
Confidence            5679999999999999998899999999865 456789999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-------c
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-------F  489 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-------~  489 (640)
                      ++....    ..++|..++.++.|||.||+|||+   .+|+||||||+|||+|+++.+||+|||+++.....       .
T Consensus        90 ~l~~~~----~~~~~~~~~~i~~qia~gl~~lH~---~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~  162 (263)
T d1sm2a_          90 YLRTQR----GLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGT  162 (263)
T ss_dssp             HHHTTT----TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCTTCSGGGEEECGGGCEEECSCC----------------
T ss_pred             Hhhccc----cCCCHHHHHHHHHHHHHHHHhhhc---cceeecccchhheeecCCCCeEecccchheeccCCCceeecce
Confidence            987643    258899999999999999999995   45999999999999999999999999999876432       2


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhC-CCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG-KMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg-~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      .+|..|+|||++       ....++.|+|||||||++|||+|+ ++|+....  ..+..+.......   ...+     .
T Consensus       163 ~gt~~y~aPE~l-------~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~--~~~~~~~i~~~~~---~~~p-----~  225 (263)
T d1sm2a_         163 KFPVKWASPEVF-------SFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS--NSEVVEDISTGFR---LYKP-----R  225 (263)
T ss_dssp             --CTTSCCHHHH-------TTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCC--HHHHHHHHHHTCC---CCCC-----T
T ss_pred             ecCcccCChHHh-------cCCCCCchhhhcchHHHHHHHHHCCCCCCCCCC--HHHHHHHHHhcCC---CCCc-----c
Confidence            357789999975       345678999999999999999995 55554322  2222222211110   0111     1


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                         .+..++.+++..||+.||++||||+||++.|++|.+.
T Consensus       226 ---~~~~~l~~li~~cl~~~p~~Rps~~~il~~L~~i~es  262 (263)
T d1sm2a_         226 ---LASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIAES  262 (263)
T ss_dssp             ---TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ---ccCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhC
Confidence               1123567788899999999999999999999998753

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-50  Score=402.17  Aligned_cols=248  Identities=24%  Similarity=0.337  Sum_probs=192.4

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||+||+|++++  .||||+++..    ...+.+.+|++++++++|||||+++|++.+ +..++|||||++|+
T Consensus        13 ~~~lG~G~fg~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~~lv~Ey~~~g~   89 (276)
T d1uwha_          13 GQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQLAIVTQWCEGSS   89 (276)
T ss_dssp             CSEEEECSSCEEEEEESSS--EEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEECCCEEE
T ss_pred             EEEEeeCCCcEEEEEEECC--EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-cEEEEEEecCCCCC
Confidence            5689999999999998754  5999998744    234678899999999999999999999764 56899999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------  487 (640)
                      |.++++....    .++|..++.++.|||+||+|||+   .+||||||||+|||++.++.+||+|||+++....      
T Consensus        90 L~~~l~~~~~----~~~~~~~~~i~~qi~~gl~yLH~---~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~  162 (276)
T d1uwha_          90 LYHHLHIIET----KFEMIKLIDIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQ  162 (276)
T ss_dssp             HHHHHHTSCC----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTSSEEECCCCCSCC---------
T ss_pred             HHHHHhhccC----CCCHHHHHHHHHHHHHHHHHHhc---CCEeccccCHHHEEEcCCCCEEEccccceeeccccCCccc
Confidence            9999975432    58999999999999999999995   4599999999999999999999999999977532      


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                        ...+|..|+|||++...    ....++.++|||||||++|||+||+.||.+...... ..........     .+...
T Consensus       163 ~~~~~gt~~y~APE~l~~~----~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~-~~~~~~~~~~-----~p~~~  232 (276)
T d1uwha_         163 FEQLSGSILWMAPEVIRMQ----DKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ-IIFMVGRGYL-----SPDLS  232 (276)
T ss_dssp             ---CCCCGGGCCHHHHTTC----SSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHH-HHHHHHHTSC-----CCCGG
T ss_pred             ccccccCcccCCHHHHhcc----cCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHH-HHHHHhcCCC-----CCcch
Confidence              23468899999986422    224578899999999999999999999975322111 1111111100     00000


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                        ....+...++.+++.+||+.||++||||+||++.|+.+..
T Consensus       233 --~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~~  272 (276)
T d1uwha_         233 --KVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLAR  272 (276)
T ss_dssp             --GSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             --hccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence              0001223456778889999999999999999999999874

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-49  Score=402.59  Aligned_cols=243  Identities=22%  Similarity=0.363  Sum_probs=188.2

Q ss_pred             hccccccCcceEEEEEeCC-C---cEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLDG-G---DVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-~---~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      .++||+|+||+||+|++.. +   ..||||++...   ...+++.+|++++++++|||||+++|+|...+..++|||||+
T Consensus        31 ~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv~Ey~~  110 (299)
T d1jpaa_          31 EQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFME  110 (299)
T ss_dssp             EEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             eeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEecC
Confidence            4689999999999999743 2   25889988754   234578899999999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC--
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP--  488 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~--  488 (640)
                      +|+|.+++....+    .++|.++++++.|||+||+|||+   .+||||||||+||||+.++.+||+|||+++.....  
T Consensus       111 ~g~L~~~~~~~~~----~l~~~~~~~i~~qia~gl~yLH~---~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~  183 (299)
T d1jpaa_         111 NGSLDSFLRQNDG----QFTVIQLVGMLRGIAAGMKYLAD---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTS  183 (299)
T ss_dssp             TEEHHHHHHTTTT----CSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC-----------
T ss_pred             CCcceeeeccccC----CCCHHHHHHHHHHHHHHHHHHhh---CCCccCccccceEEECCCCcEEECCcccceEccCCCC
Confidence            9999999876432    58999999999999999999995   45999999999999999999999999999875421  


Q ss_pred             ---------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhccccccc
Q 006559          489 ---------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWE  558 (640)
Q Consensus       489 ---------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~  558 (640)
                               ..+|..|+|||++       ....++.++|||||||++|||+| |+.||.+...  .+.+........   
T Consensus       184 ~~~~~~~~~~~~t~~y~aPE~~-------~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~--~~~~~~i~~~~~---  251 (299)
T d1jpaa_         184 DPTYTSALGGKIPIRWTAPEAI-------QYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTN--QDVINAIEQDYR---  251 (299)
T ss_dssp             ------------CGGGSCHHHH-------HSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH--HHHHHHHHTTCC---
T ss_pred             cceeeecccccCCccccCHHHH-------hcCCCCcccccccchHHHHHHHhCCCCCCCCCCH--HHHHHHHHcCCC---
Confidence                     2346789999964       44578899999999999999998 8999975332  222222221111   


Q ss_pred             ccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       559 ~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                           ...+.   +...++.+++.+||+.||++||||.||++.|+++..
T Consensus       252 -----~~~~~---~~~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~  292 (299)
T d1jpaa_         252 -----LPPPM---DCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIR  292 (299)
T ss_dssp             -----CCCCT---TCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             -----CCCCc---cchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhc
Confidence                 11111   223356778888999999999999999999999764

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-49  Score=398.81  Aligned_cols=244  Identities=25%  Similarity=0.398  Sum_probs=194.2

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHH
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~  416 (640)
                      .+.||+|+||.||+|+++++..||||+++.. ...+++.+|++++++++|||||+++|++.+ +..++||||+++|+|.+
T Consensus        18 ~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-~~~~iv~Ey~~~g~L~~   96 (272)
T d1qpca_          18 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLVD   96 (272)
T ss_dssp             EEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEECCTTCBHHH
T ss_pred             eEEEecCCCcEEEEEEECCCCEEEEEEEccCcCCHHHHHHHHHHHHhCCCCCEeEEEeeecc-CCeEEEEEeCCCCcHHH
Confidence            5679999999999999998899999999765 456779999999999999999999998864 56799999999999999


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-------c
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-------F  489 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-------~  489 (640)
                      ++....   ..+++|..+++|+.|||+||+|||+   .+|+||||||+||||++++.+||+|||+++.....       .
T Consensus        97 ~~~~~~---~~~l~~~~~~~i~~qi~~gl~~lH~---~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~~~~~  170 (272)
T d1qpca_          97 FLKTPS---GIKLTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGA  170 (272)
T ss_dssp             HTTSHH---HHTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTC
T ss_pred             HHhhcC---CCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCccchhheeeecccceeeccccceEEccCCcccccccc
Confidence            876442   2258999999999999999999995   45999999999999999999999999999876432       2


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChH
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKE  569 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  569 (640)
                      .++..|+|||++       ....++.++|||||||++|||+||..|+.... ...+..+.......        ...+..
T Consensus       171 ~gt~~y~APE~~-------~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~-~~~~~~~~i~~~~~--------~~~p~~  234 (272)
T d1qpca_         171 KFPIKWTAPEAI-------NYGTFTIKSDVWSFGILLTEIVTHGRIPYPGM-TNPEVIQNLERGYR--------MVRPDN  234 (272)
T ss_dssp             CCCTTTSCHHHH-------HHCEECHHHHHHHHHHHHHHHHTTTCCSSTTC-CHHHHHHHHHTTCC--------CCCCTT
T ss_pred             CCcccccChHHH-------hCCCCCchhhhhhhHHHHHHHHhCCCCCCCCC-CHHHHHHHHHhcCC--------CCCccc
Confidence            457789999965       34567889999999999999999655543321 11122222211110        001111


Q ss_pred             HHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          570 MEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       570 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                         ...++.+++.+||+.||++||||.+|+++|+++..
T Consensus       235 ---~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~ft  269 (272)
T d1qpca_         235 ---CPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFT  269 (272)
T ss_dssp             ---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ---ChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhhhhh
Confidence               22346778889999999999999999999999764

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.7e-49  Score=398.05  Aligned_cols=248  Identities=23%  Similarity=0.354  Sum_probs=198.7

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      .+.||+|+||+||+|++. +++.||||+++.. ...+++.+|++++++++|||||+++|+|.+.+..++|||||++|+|.
T Consensus        22 ~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~  101 (287)
T d1opja_          22 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLL  101 (287)
T ss_dssp             EEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHH
T ss_pred             eeEEeeCCCeEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEeecccCcchH
Confidence            567999999999999975 5788999999765 44577999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCCc------
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTPF------  489 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~~------  489 (640)
                      +++....   ...++|..++.++.|||.||+|||+   .+|+||||||+|||+++++.+||+|||+++......      
T Consensus       102 ~~l~~~~---~~~~~~~~~~~i~~qi~~gL~yLH~---~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~~~~  175 (287)
T d1opja_         102 DYLRECN---RQEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAG  175 (287)
T ss_dssp             HHHHHSC---TTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSEEETT
T ss_pred             HHhhhcc---ccchHHHHHHHHHHHHHHHHHHHHH---CCcccCccccCeEEECCCCcEEEccccceeecCCCCceeecc
Confidence            9997543   2368999999999999999999995   459999999999999999999999999998764321      


Q ss_pred             -cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          490 -FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       490 -~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                       .++..|+|||++       ....++.|+|||||||++|||+||..|+.... ......+......        ....+.
T Consensus       176 ~~g~~~y~aPE~~-------~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~-~~~~~~~~i~~~~--------~~~~~~  239 (287)
T d1opja_         176 AKFPIKWTAPESL-------AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI-DLSQVYELLEKDY--------RMERPE  239 (287)
T ss_dssp             EEECGGGCCHHHH-------HHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTC-CHHHHHHHHHTTC--------CCCCCT
T ss_pred             ccccccccChHHH-------cCCCCCchhhhhhHHHHHHHHHhCCCCCCCcc-hHHHHHHHHhcCC--------CCCCCc
Confidence             246789999964       44567899999999999999999776654321 1222122211110        011111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGS  610 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~  610 (640)
                      .   ...++.+++..||+.||++||||.||++.|+.+..+.+
T Consensus       240 ~---~~~~l~~li~~cl~~dP~~Rps~~ei~~~L~~~~~~~~  278 (287)
T d1opja_         240 G---CPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESS  278 (287)
T ss_dssp             T---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTSSSC
T ss_pred             c---chHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHhCC
Confidence            1   22356778888999999999999999999999876543

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-48  Score=390.33  Aligned_cols=238  Identities=20%  Similarity=0.286  Sum_probs=187.9

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||+||+|+. .+|+.||||++....   ..+.+.+|++++++++|||||++++++.+++..|+|||||++|+
T Consensus        10 ~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~   89 (271)
T d1nvra_          10 VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGE   89 (271)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEE
T ss_pred             EEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEeccCCCc
Confidence            56899999999999996 468999999987542   23568899999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC-------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH-------  486 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~-------  486 (640)
                      |.+++....     .+++..+..++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+++...       
T Consensus        90 L~~~l~~~~-----~l~e~~~~~i~~qi~~al~ylH~~---~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~  161 (271)
T d1nvra_          90 LFDRIEPDI-----GMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERL  161 (271)
T ss_dssp             GGGGSBTTT-----BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECC
T ss_pred             HHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHHc---CCccCcccHHHEEECCCCCEEEccchhheeeccCCcccc
Confidence            999997543     589999999999999999999954   59999999999999999999999999998652       


Q ss_pred             -CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          487 -TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       487 -~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                       ....+|+.|+|||++.+.+      .++.++||||+||++|||+||+.||.........+..........    .    
T Consensus       162 ~~~~~GT~~Y~APE~~~~~~------~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~~~~~~----~----  227 (271)
T d1nvra_         162 LNKMCGTLPYVAPELLKRRE------FHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYL----N----  227 (271)
T ss_dssp             BCCCCSCGGGSCTHHHHCSS------BCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHTTCTTS----T----
T ss_pred             ccceeeCcCccCHhHhcCCC------CCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCC----C----
Confidence             2345799999999763321      235689999999999999999999975433322222211111000    0    


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .....+   .++.+++.+||+.||++|||+.|+++
T Consensus       228 ~~~~~s---~~~~~li~~~L~~dP~~R~t~~eil~  259 (271)
T d1nvra_         228 PWKKID---SAPLALLHKILVENPSARITIPDIKK  259 (271)
T ss_dssp             TGGGSC---HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             ccccCC---HHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            001112   34556778899999999999999854

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-48  Score=385.42  Aligned_cols=241  Identities=22%  Similarity=0.373  Sum_probs=197.7

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHHH
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~  416 (640)
                      .+.||+|+||+||+|+++++..||||.++.. ...+++.+|+.++++++|||||+++|+|.+++..++||||+++|+|.+
T Consensus         9 ~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~g~l~~   88 (258)
T d1k2pa_           9 LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLN   88 (258)
T ss_dssp             CCCCCEETTEEEEEEEETTTEEEEEEEEESSSSCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCTTEEHHH
T ss_pred             eEEEecCCCeEEEEEEECCCCEEEEEEECcCcCCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccCCCcHHH
Confidence            5789999999999999998889999999865 456789999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-------c
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-------F  489 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-------~  489 (640)
                      ++....    ..+++..+.+++.|+|+||+|||+   .+|+||||||+|||+++++.+||+|||+++.....       .
T Consensus        89 ~~~~~~----~~~~~~~~~~i~~qi~~gl~~LH~---~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~  161 (258)
T d1k2pa_          89 YLREMR----HRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGS  161 (258)
T ss_dssp             HHHSGG----GCCCHHHHHHHHHHHHHHHHHHHH---TTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCCCCS
T ss_pred             hhhccc----cCCcHHHHHHHHHHHHHHHHHHhh---cCcccccccceeEEEcCCCcEEECcchhheeccCCCceeeccc
Confidence            976543    258899999999999999999995   45999999999999999999999999999865432       3


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      .+|..|+|||++       ....++.|+|||||||++|||+| |+.||.......  ..+.......   ...     +.
T Consensus       162 ~~t~~y~aPE~~-------~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~--~~~~i~~~~~---~~~-----p~  224 (258)
T d1k2pa_         162 KFPVRWSPPEVL-------MYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSE--TAEHIAQGLR---LYR-----PH  224 (258)
T ss_dssp             CCCGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHH--HHHHHHTTCC---CCC-----CT
T ss_pred             CCCCCcCCcHHh-------cCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHH--HHHHHHhCCC---CCC-----cc
Confidence            357789999965       34567889999999999999998 899997543222  2222221110   011     11


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                         ....++.+++.+||+.||++||||.++++.|.+|
T Consensus       225 ---~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~di  258 (258)
T d1k2pa_         225 ---LASEKVYTIMYSCWHEKADERPTFKILLSNILDV  258 (258)
T ss_dssp             ---TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHCC
T ss_pred             ---cccHHHHHHHHHHccCCHhHCcCHHHHHHHhhCC
Confidence               1223567788889999999999999999998764

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-48  Score=393.52  Aligned_cols=239  Identities=23%  Similarity=0.316  Sum_probs=189.9

Q ss_pred             ccccccCcceEEEEEeCC---CcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          339 ELLGKGCVGATYKVVLDG---GDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~---~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      ++||+|+||+||+|.+++   ++.||||+++...    ..+++.+|++++++++|||||+++|+|.. +..+||||||++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~lvmE~~~~   91 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL   91 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEEEEEEcCCC
Confidence            469999999999998653   4579999997542    24578899999999999999999999965 467899999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---  488 (640)
                      |+|.++++...     +++|..+++++.|||.||+|||+   .+||||||||+|||++.++.+||+|||+++.+...   
T Consensus        92 g~L~~~l~~~~-----~l~~~~~~~i~~qi~~gl~ylH~---~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~  163 (277)
T d1xbba_          92 GPLNKYLQQNR-----HVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY  163 (277)
T ss_dssp             EEHHHHHHHCT-----TCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSE
T ss_pred             CcHHHHHhhcc-----CCCHHHHHHHHHHHHHHHhhHHh---CCcccCCCcchhhcccccCcccccchhhhhhccccccc
Confidence            99999998653     58999999999999999999995   45999999999999999999999999999875421   


Q ss_pred             ------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccc
Q 006559          489 ------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFD  561 (640)
Q Consensus       489 ------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  561 (640)
                            ..+|..|+|||++       ....++.++|||||||++|||+| |+.||.+....  +..........      
T Consensus       164 ~~~~~~~~gt~~y~APE~l-------~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~--~~~~~i~~~~~------  228 (277)
T d1xbba_         164 YKAQTHGKWPVKWYAPECI-------NYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAMLEKGER------  228 (277)
T ss_dssp             EEC----CCCGGGCCHHHH-------HHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHTTCC------
T ss_pred             cccccccCCCceecCchhh-------cCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHH--HHHHHHHcCCC------
Confidence                  2457889999965       34567789999999999999998 89999754322  21222111110      


Q ss_pred             hhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          562 FELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       562 ~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                        ...+..   ...++.+++.+||+.||++||||++|+++|+.+.
T Consensus       229 --~~~p~~---~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~~  268 (277)
T d1xbba_         229 --MGCPAG---CPREMYDLMNLCWTYDVENRPGFAAVELRLRNYY  268 (277)
T ss_dssp             --CCCCTT---CCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred             --CCCCcc---cCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhCHH
Confidence              011111   2235667888999999999999999999998865

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-48  Score=392.99  Aligned_cols=240  Identities=23%  Similarity=0.308  Sum_probs=191.7

Q ss_pred             cccccCcceEEEEEeC---CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          340 LLGKGCVGATYKVVLD---GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~---~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .||+|+||+||+|.++   ++..||||.++...   ..+++.+|++++++++|||||+++|+|.. +..|+|||||++|+
T Consensus        16 ~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~~lvmE~~~~g~   94 (285)
T d1u59a_          16 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGP   94 (285)
T ss_dssp             EEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTTEE
T ss_pred             EEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeEEEEEEeCCCCc
Confidence            4999999999999864   34579999997552   34668899999999999999999999975 56899999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------  487 (640)
                      |.+++...+    ..+++..+.+++.|||+||+|||+   .+|+||||||+|||++.++.+||+|||+++....      
T Consensus        95 L~~~l~~~~----~~l~~~~~~~i~~qi~~gL~ylH~---~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~  167 (285)
T d1u59a_          95 LHKFLVGKR----EEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYT  167 (285)
T ss_dssp             HHHHHTTCT----TTSCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEEC
T ss_pred             HHHHhhccc----cCCCHHHHHHHHHHHHHHHHHHHh---CCeecCcCchhheeeccCCceeeccchhhhcccccccccc
Confidence            999986543    258999999999999999999995   4599999999999999999999999999987642      


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhcccccccccchh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                         ...+|..|+|||++       ....++.++|||||||++|||+| |+.||.+....  +..........        
T Consensus       168 ~~~~~~gt~~y~aPE~~-------~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~--~~~~~i~~~~~--------  230 (285)
T d1u59a_         168 ARSAGKWPLKWYAPECI-------NFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFIEQGKR--------  230 (285)
T ss_dssp             CCCSSCCCGGGCCHHHH-------HHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTH--HHHHHHHTTCC--------
T ss_pred             cccccccCccccChHHH-------hCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCCC--------
Confidence               12357789999964       34567889999999999999998 89999754322  22222211110        


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                      +..++.   ...++.+++..||+.||++||||.+|++.|+.+..
T Consensus       231 ~~~p~~---~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~~  271 (285)
T d1u59a_         231 MECPPE---CPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYY  271 (285)
T ss_dssp             CCCCTT---CCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCCc---CCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence            011111   22356778889999999999999999999998764

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-48  Score=391.31  Aligned_cols=245  Identities=20%  Similarity=0.327  Sum_probs=190.1

Q ss_pred             hccccccCcceEEEEEeCCC-----cEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVLDGG-----DVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~-----~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .++||+|+||.||+|++++.     ..||||++....   ...++.+|++++++++|||||+++|+|.+.+..++|||||
T Consensus        12 ~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~v~e~~   91 (283)
T d1mqba_          12 QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYM   91 (283)
T ss_dssp             EEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred             eeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEEEEEec
Confidence            57899999999999997543     369999997552   2356889999999999999999999999999999999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-  488 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-  488 (640)
                      .+|++.+++.....    .++|..+++++.|||.||+|||+   .+|+||||||+||||+.++.+||+|||+++..... 
T Consensus        92 ~~~~l~~~~~~~~~----~~~~~~~~~i~~~i~~gl~~lH~---~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~  164 (283)
T d1mqba_          92 ENGALDKFLREKDG----EFSVLQLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP  164 (283)
T ss_dssp             TTEEHHHHHHHTTT----CSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCCCC--------
T ss_pred             ccCcchhhhhcccc----cccHHHHHHHHHHHHHhhhhccc---cccccCccccceEEECCCCeEEEcccchhhcccCCC
Confidence            99999998875432    58999999999999999999995   45999999999999999999999999999875321 


Q ss_pred             --------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccccc
Q 006559          489 --------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVF  560 (640)
Q Consensus       489 --------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  560 (640)
                              ..+|..|+|||++       ....++.++|||||||++|||+||..|+.... ...+..+.......     
T Consensus       165 ~~~~~~~~~~gt~~Y~APE~l-------~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~-~~~~~~~~i~~~~~-----  231 (283)
T d1mqba_         165 EATYTTSGGKIPIRWTAPEAI-------SYRKFTSASDVWSFGIVMWEVMTYGERPYWEL-SNHEVMKAINDGFR-----  231 (283)
T ss_dssp             ---------CCCGGGSCHHHH-------HSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-CHHHHHHHHHTTCC-----
T ss_pred             ccceEeccCCCCccccCHHHH-------ccCCCCCcccccccHHHHHHHHhCCCCccccC-CHHHHHHHHhccCC-----
Confidence                    2347789999964       44578899999999999999999766654321 12222222221110     


Q ss_pred             chhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          561 DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       561 d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                         ...+.   +...++.+++.+||+.||++||||.||+++|+++...
T Consensus       232 ---~~~~~---~~~~~l~~li~~cl~~~p~~RPt~~eil~~L~~l~~~  273 (283)
T d1mqba_         232 ---LPTPM---DCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA  273 (283)
T ss_dssp             ---CCCCT---TCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             ---CCCch---hhHHHHHHHHHHHCcCCHhHCcCHHHHHHHHHHHhhC
Confidence               01111   1234567788899999999999999999999998653

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-48  Score=392.09  Aligned_cols=243  Identities=18%  Similarity=0.264  Sum_probs=192.8

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      .+.||+|+||+||+|+. .++..||||++...  ...+.+.+|++++++++|||||++++++.+.+..|+|||||++|+|
T Consensus        17 ~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~~~g~L   96 (288)
T d2jfla1          17 IGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAV   96 (288)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEH
T ss_pred             eEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecCCCCcH
Confidence            46799999999999996 46889999998754  3346788999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC------CC
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH------TP  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~------~~  488 (640)
                      .+++....    .++++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...      ..
T Consensus        97 ~~~~~~~~----~~l~e~~~~~i~~qi~~gL~ylH~~---~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~~~~~  169 (288)
T d2jfla1          97 DAVMLELE----RPLTESQIQVVCKQTLDALNYLHDN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDS  169 (288)
T ss_dssp             HHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECHHHHHHHTC
T ss_pred             HHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHHC---CEEEeecChhheeECCCCCEEEEechhhhccCCCcccccc
Confidence            99976532    2589999999999999999999954   59999999999999999999999999987653      24


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..+|+.|+|||++...  ......++.++|||||||++|||+||+.||.+.....  ..........      +.+..+.
T Consensus       170 ~~Gt~~y~APE~l~~~--~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~--~~~~i~~~~~------~~~~~~~  239 (288)
T d2jfla1         170 FIGTPYWMAPEVVMCE--TSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMR--VLLKIAKSEP------PTLAQPS  239 (288)
T ss_dssp             CCSCCTTCCHHHHTTC--STTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGG--HHHHHHHSCC------CCCSSGG
T ss_pred             cccccccCCHHHHhhc--ccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHH--HHHHHHcCCC------CCCCccc
Confidence            5679999999987433  1234568899999999999999999999997533211  1111111110      0011111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..   ..++.+++.+||+.||++|||+.|+++
T Consensus       240 ~~---s~~~~~li~~~L~~dp~~R~t~~ell~  268 (288)
T d2jfla1         240 RW---SSNFKDFLKKCLEKNVDARWTTSQLLQ  268 (288)
T ss_dssp             GS---CHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             cC---CHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            12   234666778899999999999999864

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-48  Score=384.01  Aligned_cols=235  Identities=20%  Similarity=0.303  Sum_probs=191.4

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..+.||+|+||+||+|+.. +++.||||++...     ...+.+.+|++++++++|||||++++++.+++..|+|||||+
T Consensus        10 i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivmEy~~   89 (263)
T d2j4za1          10 IGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAP   89 (263)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred             EEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEEeecC
Confidence            3578999999999999974 6889999998643     334668899999999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC--
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP--  488 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~--  488 (640)
                      +|+|.+++....     ++++..+..++.||+.||+|||+.   +||||||||+|||++.++.+||+|||+++.....  
T Consensus        90 ~g~L~~~l~~~~-----~l~e~~~~~i~~qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~~  161 (263)
T d2j4za1          90 LGTVYRELQKLS-----KFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR  161 (263)
T ss_dssp             TCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCCC
T ss_pred             CCcHHHHHhhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeeeeeeccccceecCCCCEeecccceeeecCCCcc
Confidence            999999997543     589999999999999999999954   5999999999999999999999999999876432  


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                        ..+|+.|+|||++.       ...++.++|||||||++|||+||+.||.....  .+..+.....         ....
T Consensus       162 ~~~~Gt~~Y~APE~~~-------~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~--~~~~~~i~~~---------~~~~  223 (263)
T d2j4za1         162 TTLCGTLDYLPPEMIE-------GRMHDEKVDLWSLGVLCYEFLVGKPPFEANTY--QETYKRISRV---------EFTF  223 (263)
T ss_dssp             EETTEEGGGCCHHHHT-------TCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSH--HHHHHHHHTT---------CCCC
T ss_pred             cccCCCCcccCHHHHc-------CCCCCchhhhhhHhHHHHHHhcCCCCCCCCCH--HHHHHHHHcC---------CCCC
Confidence              35689999999753       34567899999999999999999999975432  1112221111         1111


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      +...++   ++.+++.+||+.||++|||+.|+++
T Consensus       224 p~~~s~---~~~~li~~~L~~dp~~R~t~~eil~  254 (263)
T d2j4za1         224 PDFVTE---GARDLISRLLKHNPSQRPMLREVLE  254 (263)
T ss_dssp             CTTSCH---HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CccCCH---HHHHHHHHHccCCHhHCcCHHHHHc
Confidence            112222   4566778899999999999999975

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-48  Score=394.66  Aligned_cols=261  Identities=26%  Similarity=0.335  Sum_probs=197.0

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccccchH-HHHHHHHHHhccCCCcccceeEEEEcCC----eEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKR-EVDEWLRVIGGLRHSNIVSIRAYCNGKD----ELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~-~~~~e~~~l~~l~H~niv~l~~~~~~~~----~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||.||+|++ +|+.||||+++.....+ ..+.|+..+.+++|||||+++|+|...+    .+|+|||||++|
T Consensus         8 ~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~~g   86 (303)
T d1vjya_           8 QESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHG   86 (303)
T ss_dssp             EEEEECCSSSEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTC
T ss_pred             EEEEeeCCCeEEEEEEE-CCEEEEEEEECccchhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEecccCC
Confidence            46799999999999997 47899999997653332 2334566667889999999999998653    689999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcC-----CCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGY-----NKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-----~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      +|.++++..      .++|..+++++.|+|.||+|+|+.     ..++||||||||+|||++.++.+||+|||+++....
T Consensus        87 ~L~~~l~~~------~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~  160 (303)
T d1vjya_          87 SLFDYLNRY------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDS  160 (303)
T ss_dssp             BHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEET
T ss_pred             CHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccccccC
Confidence            999999864      489999999999999999999964     246799999999999999999999999999886532


Q ss_pred             ----------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchH------------H
Q 006559          488 ----------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIV------------K  545 (640)
Q Consensus       488 ----------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~------------~  545 (640)
                                ...+|..|+|||++..... .....++.|+|||||||+||||+||..|+........            .
T Consensus       161 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~  239 (303)
T d1vjya_         161 ATDTIDIAPNHRVGTKRYMAPEVLDDSIN-MKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVE  239 (303)
T ss_dssp             TTTEECC----CCSCGGGCCHHHHTTCSC-TTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHH
T ss_pred             CCcceeccccceecccCcCChhhcccccc-ccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHH
Confidence                      2346899999998644321 1222467899999999999999999988753221111            1


Q ss_pred             HHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 006559          546 WVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKGS  610 (640)
Q Consensus       546 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~~  610 (640)
                      .........    ..++.+.......+....+.+++.+||+.||++||||.||++.|+++....+
T Consensus       240 ~~~~~~~~~----~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~~~  300 (303)
T d1vjya_         240 EMRKVVCEQ----KLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEG  300 (303)
T ss_dssp             HHHHHHTTS----CCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcc----ccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHhcC
Confidence            111111110    1111111111223455678889999999999999999999999999986543

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-47  Score=386.97  Aligned_cols=236  Identities=20%  Similarity=0.324  Sum_probs=189.8

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      .+.||+|+||+||+|+. .+|+.||||++...  ...+.+.+|++++++++|||||++++++...+..|+|||||++|+|
T Consensus        25 ~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L  104 (293)
T d1yhwa1          25 FEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL  104 (293)
T ss_dssp             CEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBH
T ss_pred             EEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEecCCCcH
Confidence            46799999999999995 56899999998754  3456788999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------C
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------P  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------~  488 (640)
                      .+++...      .+++..+..++.||+.||+|||+   .+||||||||+|||++.++.+||+|||+++.+..      .
T Consensus       105 ~~~~~~~------~l~~~~~~~i~~qi~~aL~yLH~---~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~~~~  175 (293)
T d1yhwa1         105 TDVVTET------CMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST  175 (293)
T ss_dssp             HHHHHHS------CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCC
T ss_pred             HHHhhcc------CCCHHHHHHHHHHHHHHHHHHHH---CCCcccCCcHHHeEECCCCcEeeccchhheeeccccccccc
Confidence            9988753      48899999999999999999995   4599999999999999999999999999987632      2


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..+|+.|+|||++.       ...++.++|||||||++|||+||+.||.+......  .........      +....+.
T Consensus       176 ~~gt~~Y~aPE~~~-------~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~--~~~~~~~~~------~~~~~~~  240 (293)
T d1yhwa1         176 MVGTPYWMAPEVVT-------RKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRA--LYLIATNGT------PELQNPE  240 (293)
T ss_dssp             CCSCGGGCCHHHHS-------SSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH--HHHHHHHCS------CCCSSGG
T ss_pred             cccCCCccChhhhc-------CCCCCchhceehHhHHHHHHhhCCCCCCCCCHHHH--HHHHHhCCC------CCCCCcc
Confidence            35789999999753       44677899999999999999999999975432111  111111100      0011111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..+   .++.+++.+||+.||++|||+.|+++
T Consensus       241 ~~s---~~~~~li~~~L~~dP~~R~s~~eil~  269 (293)
T d1yhwa1         241 KLS---AIFRDFLNRCLDMDVEKRGSAKELLQ  269 (293)
T ss_dssp             GSC---HHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             cCC---HHHHHHHHHHccCChhHCcCHHHHhc
Confidence            122   34566778899999999999999864

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-47  Score=380.52  Aligned_cols=238  Identities=21%  Similarity=0.330  Sum_probs=186.8

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEc----CCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNG----KDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~----~~~~~lV~Ey  408 (640)
                      .++||+|+||+||+|+.. ++..||+|++....    ..+.+.+|++++++++|||||++++++..    ...+|+||||
T Consensus        14 ~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivmE~   93 (270)
T d1t4ha_          14 DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTEL   93 (270)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEEC
T ss_pred             eeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEEeC
Confidence            457999999999999965 57889999987542    23568899999999999999999999865    3468999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC-CCCCeEEccCCcccccCC
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD-QLGNACISDIGVHQLFHT  487 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~-~~~~~kl~DfGl~~~~~~  487 (640)
                      +++|+|.+++....     .+++..+..++.||++||+|||+.+ ++|+||||||+|||++ +++.+||+|||+++....
T Consensus        94 ~~~g~L~~~l~~~~-----~~~~~~~~~~~~qi~~gl~yLH~~~-~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~  167 (270)
T d1t4ha_          94 MTSGTLKTYLKRFK-----VMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA  167 (270)
T ss_dssp             CCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred             CCCCcHHHHHhccc-----cccHHHHHHHHHHHHHHHHHHHHCC-CCEEeCCcChhhceeeCCCCCEEEeecCcceeccC
Confidence            99999999997643     5889999999999999999999642 4499999999999996 579999999999987543


Q ss_pred             C----ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchh
Q 006559          488 P----FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFE  563 (640)
Q Consensus       488 ~----~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  563 (640)
                      .    ..+|+.|+|||++.        ..++.++|||||||++|||+||+.||.+... .....+.........     .
T Consensus       168 ~~~~~~~GT~~Y~aPE~~~--------~~~~~~~DIwSlGvilyel~~g~~Pf~~~~~-~~~~~~~i~~~~~~~-----~  233 (270)
T d1t4ha_         168 SFAKAVIGTPEFMAPEMYE--------EKYDESVDVYAFGMCMLEMATSEYPYSECQN-AAQIYRRVTSGVKPA-----S  233 (270)
T ss_dssp             TSBEESCSSCCCCCGGGGG--------TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSS-HHHHHHHHTTTCCCG-----G
T ss_pred             CccCCcccCccccCHHHhC--------CCCCCcCchhhHHHHHHHHHHCCCCCCCccc-HHHHHHHHHcCCCCc-----c
Confidence            2    35799999999752        3578899999999999999999999975332 222222221111100     0


Q ss_pred             hccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          564 LIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       564 ~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .  +..   ...++.+++.+||+.||++|||+.|+++
T Consensus       234 ~--~~~---~~~~~~~li~~~l~~dp~~R~s~~ell~  265 (270)
T d1t4ha_         234 F--DKV---AIPEVKEIIEGCIRQNKDERYSIKDLLN  265 (270)
T ss_dssp             G--GGC---CCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             c--Ccc---CCHHHHHHHHHHccCCHhHCcCHHHHhC
Confidence            0  111   1224667788899999999999999865

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-47  Score=381.54  Aligned_cols=243  Identities=26%  Similarity=0.374  Sum_probs=190.4

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEc-CCeEEEEEeccCCCCHHH
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNG-KDELFLVYDYLPHGSLHS  416 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~-~~~~~lV~Ey~~~gsL~~  416 (640)
                      .+.||+|+||.||+|+++ |..||||+++.....+++.+|++++++++|||||+++|+|.+ .+.+|+||||+++|+|.+
T Consensus        12 ~~~lG~G~fg~Vy~~~~~-~~~vAvK~i~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~~g~L~~   90 (262)
T d1byga_          12 LQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVD   90 (262)
T ss_dssp             EEEEEECSSCEEEEEEET-TEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHH
T ss_pred             eEEEecCCCeEEEEEEEC-CeEEEEEEECcHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEeccCCCCHHH
Confidence            577999999999999985 678999999887777889999999999999999999999965 456899999999999999


Q ss_pred             hhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC---ccccc
Q 006559          417 LLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP---FFIND  493 (640)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~---~~~~~  493 (640)
                      +++...   ...++|..+++++.|||.||+|||+   .+|+||||||+|||++.++.+|++|||+++.....   ...+.
T Consensus        91 ~l~~~~---~~~l~~~~~~~i~~~i~~al~ylH~---~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~~~~~~~~~  164 (262)
T d1byga_          91 YLRSRG---RSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV  164 (262)
T ss_dssp             HHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC------------CCT
T ss_pred             HHHhcC---CCCCCHHHHHHHHHHHHhhcccccc---CceeccccchHhheecCCCCEeecccccceecCCCCccccccc
Confidence            997542   1258999999999999999999995   45999999999999999999999999999876432   34577


Q ss_pred             cccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCc-chHHHHHHhhcccccccccchhhccChHHH
Q 006559          494 AYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGEL-GIVKWVQMMGQDESAWEVFDFELIMDKEME  571 (640)
Q Consensus       494 ~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  571 (640)
                      .|+|||++       ....++.++|||||||++|||+| |+.|+..... ....++.....         ++  .+... 
T Consensus       165 ~y~aPE~l-------~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~i~~~~~---------~~--~~~~~-  225 (262)
T d1byga_         165 KWTAPEAL-------REKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYK---------MD--APDGC-  225 (262)
T ss_dssp             TTSCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCC---------CC--CCTTC-
T ss_pred             cCCChHHH-------hCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCC---------CC--CCccC-
Confidence            89999964       34567899999999999999999 6888875332 22222221111         11  11111 


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          572 EEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       572 ~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                        ..++.+++.+||+.||++||||.+++++|++++..
T Consensus       226 --~~~~~~li~~cl~~dP~~Rps~~~l~~~L~~i~~~  260 (262)
T d1byga_         226 --PPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH  260 (262)
T ss_dssp             --CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHhC
Confidence              23466788889999999999999999999999753

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-47  Score=392.57  Aligned_cols=256  Identities=20%  Similarity=0.251  Sum_probs=194.3

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .+.||+|+||+||+|+. .+|+.||||+++..   ...+.+.+|++++++++|||||+++++|.+++..|+|||||++|+
T Consensus        11 ~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmEy~~gg~   90 (322)
T d1s9ja_          11 ISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGS   90 (322)
T ss_dssp             EEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEECCTTEE
T ss_pred             EEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCc
Confidence            46899999999999996 46889999998754   234568899999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC----CCc
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH----TPF  489 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~----~~~  489 (640)
                      |.+++....     .+++..+..++.|++.||+|||+.  .+|+||||||+|||++.++.+||+|||+|+...    ...
T Consensus        91 L~~~l~~~~-----~l~~~~~~~~~~qil~aL~yLH~~--~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~~~  163 (322)
T d1s9ja_          91 LDQVLKKAG-----RIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSF  163 (322)
T ss_dssp             HHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHTC---
T ss_pred             HHHHHhhcC-----CCCHHHHHHHHHHHHHHHHHHHHh--CCEEccccCHHHeeECCCCCEEEeeCCCccccCCCccccc
Confidence            999997543     589999999999999999999952  359999999999999999999999999998653    345


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccc------------
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAW------------  557 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~------------  557 (640)
                      .+|..|+|||++.       ...++.++||||+||++|||+||+.||.....................            
T Consensus       164 ~GT~~Y~APEvl~-------~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (322)
T d1s9ja_         164 VGTRSYMSPERLQ-------GTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRP  236 (322)
T ss_dssp             CCSSCCCCHHHHH-------CSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC---------------------
T ss_pred             cCCccccCchHHc-------CCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCccccccccc
Confidence            7899999999763       356788999999999999999999999754333221111000000000            


Q ss_pred             ---cccchhhccC--hHH-------------HHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhhc
Q 006559          558 ---EVFDFELIMD--KEM-------------EEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDIRT  607 (640)
Q Consensus       558 ---~~~d~~~~~~--~~~-------------~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i~~  607 (640)
                         ...+......  ...             .....++.+++.+||+.||++|||+.|+++  .+++...
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~Hpf~~~~~~  306 (322)
T d1s9ja_         237 LSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDA  306 (322)
T ss_dssp             ---------CCCCHHHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHHHH
T ss_pred             ccccccccccchhHHHHHhhhhccCCccCccccCCHHHHHHHHHHcCCChhHCcCHHHHhhCHhhCcCCc
Confidence               0000000000  000             001235677888999999999999999976  5666543

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-47  Score=383.44  Aligned_cols=242  Identities=18%  Similarity=0.266  Sum_probs=180.1

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEc--CCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNG--KDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~--~~~~~lV~Ey~~  410 (640)
                      .+.||+|+||+||+|+. .+|+.||||.+....    ..+.+.+|++++++++|||||++++++.+  .+.+|+|||||+
T Consensus         9 ~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~ivmEy~~   88 (269)
T d2java1           9 LYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCE   88 (269)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEEEECCT
T ss_pred             eEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEEEecCC
Confidence            46899999999999986 468899999987542    23557889999999999999999999965  456899999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCC--CCCceecCCCCCCeEECCCCCeEEccCCcccccCC-
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN--KAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~--~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-  487 (640)
                      +|+|.+++..... ....+++..+..++.|++.||+|||+.+  ..+||||||||+|||++.++.+||+|||+++.... 
T Consensus        89 ~g~L~~~i~~~~~-~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~  167 (269)
T d2java1          89 GGDLASVITKGTK-ERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHD  167 (269)
T ss_dssp             TEEHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHHC---
T ss_pred             CCcHHHHHHhccc-cCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceeecccC
Confidence            9999999864321 1125899999999999999999999643  24599999999999999999999999999987642 


Q ss_pred             -----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccch
Q 006559          488 -----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       488 -----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                           ...+|+.|+|||++       ....++.++|||||||++|||+||+.||......  +......... ..     
T Consensus       168 ~~~~~~~~gt~~Y~APE~l-------~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~--~~~~~i~~~~-~~-----  232 (269)
T d2java1         168 TSFAKAFVGTPYYMSPEQM-------NRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK--ELAGKIREGK-FR-----  232 (269)
T ss_dssp             --------CCCSCCCHHHH-------TTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHHHHTC-CC-----
T ss_pred             CCccccCCCCcccCCHHHH-------cCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHH--HHHHHHHcCC-CC-----
Confidence                 24568899999975       3456788999999999999999999999753321  1111111110 00     


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .  .+...++   ++.+++.+||+.||++|||+.|+++
T Consensus       233 ~--~~~~~s~---~l~~li~~~L~~dp~~Rps~~ell~  265 (269)
T d2java1         233 R--IPYRYSD---ELNEIITRMLNLKDYHRPSVEEILE  265 (269)
T ss_dssp             C--CCTTSCH---HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             C--CCcccCH---HHHHHHHHHcCCChhHCcCHHHHHh
Confidence            0  1111222   4666778899999999999999864

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-47  Score=385.41  Aligned_cols=246  Identities=23%  Similarity=0.379  Sum_probs=192.9

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      ..+.||+|+||.||+|+.+++..||||+++.. ...+++.+|+.++++++|||||+++|+|. .+..++|||||++|+|.
T Consensus        21 i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~-~~~~~lv~Ey~~~g~l~   99 (285)
T d1fmka3          21 LEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYMSKGSLL   99 (285)
T ss_dssp             EEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEECCCTTCBHH
T ss_pred             EeeEEeeCCCeEEEEEEECCCCEEEEEEECcccCCHHHHHHHHHHHHhcccCCEeEEEEEEe-cCCeEEEEEecCCCchh
Confidence            35679999999999999998889999999765 44677999999999999999999999985 45689999999999999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-------
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-------  488 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-------  488 (640)
                      +++.....   ..++|..++.++.|||.||+|||+   .+|+||||||+|||+|.++.+||+|||+++.....       
T Consensus       100 ~~~~~~~~---~~l~~~~~~~i~~~i~~gl~~LH~---~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~  173 (285)
T d1fmka3         100 DFLKGETG---KYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQG  173 (285)
T ss_dssp             HHHSHHHH---TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCTTC------------
T ss_pred             hhhhhccc---ccchHHHHHHHHHHHHHHHHHHhh---hheecccccceEEEECCCCcEEEcccchhhhccCCCceeecc
Confidence            98875421   248999999999999999999995   45999999999999999999999999999876422       


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..+|..|+|||++       ....++.++|||||||++|||+||..|+.... ...+..........        ...++
T Consensus       174 ~~gt~~y~aPE~~-------~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~-~~~~~~~~i~~~~~--------~~~~~  237 (285)
T d1fmka3         174 AKFPIKWTAPEAA-------LYGRFTIKSDVWSFGILLTELTTKGRVPYPGM-VNREVLDQVERGYR--------MPCPP  237 (285)
T ss_dssp             --CCGGGSCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC-CHHHHHHHHHTTCC--------CCCCT
T ss_pred             ccccccccChHHH-------hCCCCCcHHhhhcchHHHHHHHhCCCCCCCCC-CHHHHHHHHHhcCC--------CCCCc
Confidence            3457889999964       45677899999999999999999766654322 22222222221100        00111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ..   ..++.+++.+||+.||++||+|.+|+++|+++...
T Consensus       238 ~~---~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~~  274 (285)
T d1fmka3         238 EC---PESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS  274 (285)
T ss_dssp             TS---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSC
T ss_pred             cc---CHHHHHHHHHHcccCHhHCcCHHHHHHHHhhhhcC
Confidence            22   23466788899999999999999999999987643

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-47  Score=392.32  Aligned_cols=245  Identities=21%  Similarity=0.308  Sum_probs=190.4

Q ss_pred             hhccccccCcceEEEEEeCCC------cEEEEEEeccc---cchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEE
Q 006559          337 SAELLGKGCVGATYKVVLDGG------DVVVVKRIRER---KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVY  406 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~------~~vavK~l~~~---~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~  406 (640)
                      ..++||+|+||+||+|+..+.      ..||||.+...   .....+.+|++++.++ +|||||+++++|...+..|+||
T Consensus        41 l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~  120 (325)
T d1rjba_          41 FGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIF  120 (325)
T ss_dssp             EEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             EeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCeEEEEE
Confidence            357899999999999986432      25899998654   3345688899999988 8999999999999999999999


Q ss_pred             eccCCCCHHHhhccCCCC------------------CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE
Q 006559          407 DYLPHGSLHSLLHGSRGP------------------GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV  468 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~------------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl  468 (640)
                      |||++|+|.++++..+..                  ....++|..++.++.|||+||+|||+   .+||||||||+|||+
T Consensus       121 Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~---~~IiHRDlKp~Nill  197 (325)
T d1rjba_         121 EYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF---KSCVHRDLAARNVLV  197 (325)
T ss_dssp             ECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHH---TTEEETTCSGGGEEE
T ss_pred             EcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCchhcccc
Confidence            999999999999765321                  11258999999999999999999995   459999999999999


Q ss_pred             CCCCCeEEccCCcccccCC--------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 006559          469 DQLGNACISDIGVHQLFHT--------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDG  539 (640)
Q Consensus       469 ~~~~~~kl~DfGl~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~  539 (640)
                      +.++.+||+|||+++....        ...+|..|+|||++       ....++.++|||||||++|||+| |+.||.+.
T Consensus       198 ~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l-------~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~  270 (325)
T d1rjba_         198 THGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESL-------FEGIYTIKSDVWSYGILLWEIFSLGVNPYPGI  270 (325)
T ss_dssp             ETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             ccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHH-------cCCCCCcceeccchhHHHHHHHhCCCCCCCCC
Confidence            9999999999999986542        12347889999964       44567899999999999999998 89999754


Q ss_pred             CcchHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 006559          540 ELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIE  603 (640)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~  603 (640)
                      .....- .+......        .+..+..   ...++.+++.+||+.||++||||+||++.|.
T Consensus       271 ~~~~~~-~~~~~~~~--------~~~~p~~---~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~  322 (325)
T d1rjba_         271 PVDANF-YKLIQNGF--------KMDQPFY---ATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG  322 (325)
T ss_dssp             CCSHHH-HHHHHTTC--------CCCCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CHHHHH-HHHHhcCC--------CCCCCCc---CCHHHHHHHHHHcCCChhHCcCHHHHHHHHh
Confidence            332111 11111110        0011111   2235677888899999999999999999986

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.9e-47  Score=386.64  Aligned_cols=239  Identities=21%  Similarity=0.342  Sum_probs=190.2

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||+||+|+. .+++.||||++....     ..+.+.+|++++++++|||||++++++.+++..|+|||||++
T Consensus        20 l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~   99 (309)
T d1u5ra_          20 LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLG   99 (309)
T ss_dssp             EEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSE
T ss_pred             eEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEEecCC
Confidence            46799999999999985 568889999987542     224578899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--Cc
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--PF  489 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--~~  489 (640)
                      |+|..++....     ++++..+..++.||+.||+|||+.   +||||||||+|||++.++.+||+|||+++....  ..
T Consensus       100 g~l~~~~~~~~-----~l~e~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~  171 (309)
T d1u5ra_         100 SASDLLEVHKK-----PLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSF  171 (309)
T ss_dssp             EHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSBCCC
T ss_pred             CchHHHHHhCC-----CCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEECCCCCEEEeecccccccCCCCcc
Confidence            99987765443     589999999999999999999954   599999999999999999999999999987653  45


Q ss_pred             cccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccChH
Q 006559          490 FINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDKE  569 (640)
Q Consensus       490 ~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  569 (640)
                      .+|+.|+|||++.+.    ....|+.++|||||||++|||+||+.||.+....  ...........      +.. ....
T Consensus       172 ~GT~~Y~APE~~~~~----~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~--~~~~~i~~~~~------~~~-~~~~  238 (309)
T d1u5ra_         172 VGTPYWMAPEVILAM----DEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM--SALYHIAQNES------PAL-QSGH  238 (309)
T ss_dssp             CSCGGGCCHHHHTTT----TSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHSCC------CCC-SCTT
T ss_pred             ccCccccCHHHHhcc----CCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHH--HHHHHHHhCCC------CCC-CCCC
Confidence            679999999986432    2345788999999999999999999999753221  11111111110      000 1111


Q ss_pred             HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          570 MEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       570 ~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .+   .++.+++.+||+.||++|||+.|+++
T Consensus       239 ~s---~~~~~li~~~L~~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         239 WS---EYFRNFVDSCLQKIPQDRPTSEVLLK  266 (309)
T ss_dssp             SC---HHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CC---HHHHHHHHHHCcCChhHCcCHHHHHh
Confidence            22   24666778899999999999999865

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-46  Score=382.12  Aligned_cols=246  Identities=21%  Similarity=0.295  Sum_probs=192.4

Q ss_pred             hccccccCcceEEEEEeCCC----cEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEc-CCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVLDGG----DVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNG-KDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~----~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~-~~~~~lV~Ey~  409 (640)
                      .++||+|+||+||+|++.++    ..||||+++..   ...+++.+|++++++++|||||+++|++.. +...++|||||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~  111 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  111 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence            57899999999999997542    25899998743   234668999999999999999999999875 56899999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-  488 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-  488 (640)
                      ++|+|.++++....    .+++..+++++.|+|.||.|||+   .+|+||||||+|||+++++.+||+|||+++..... 
T Consensus       112 ~~g~l~~~~~~~~~----~~~~~~~~~i~~qia~gL~~lH~---~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~  184 (311)
T d1r0pa_         112 KHGDLRNFIRNETH----NPTVKDLIGFGLQVAKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE  184 (311)
T ss_dssp             TTCBHHHHHHCTTC----CCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTT
T ss_pred             ecCchhhhhccccc----cchHHHHHHHHHHHHHhhhhhcc---cCcccCCccHHhEeECCCCCEEEecccchhhccccc
Confidence            99999999886542    57888999999999999999995   45999999999999999999999999999875321 


Q ss_pred             ---------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccc
Q 006559          489 ---------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       489 ---------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  559 (640)
                               ..+|..|+|||++       ....++.++|||||||++|||+||+.||.... ....+..........   
T Consensus       185 ~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~-~~~~~~~~i~~g~~~---  253 (311)
T d1r0pa_         185 FDSVHNKTGAKLPVKWMALESL-------QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV-NTFDITVYLLQGRRL---  253 (311)
T ss_dssp             CCCTTCTTCSSCCGGGSCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCSCC-------CHHHHHTTCCC---
T ss_pred             cccceecccccccccccChHHH-------hcCCCCChhHhhhhHHHHHHHHHCCCCCCCCC-CHHHHHHHHHcCCCC---
Confidence                     2357789999964       45678899999999999999999888776422 111111111111100   


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG  609 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~  609 (640)
                           ..++.   ...++.+++.+||+.||++||+|.||++.|+++....
T Consensus       254 -----~~p~~---~~~~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~~~  295 (311)
T d1r0pa_         254 -----LQPEY---CPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTF  295 (311)
T ss_dssp             -----CCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTC
T ss_pred             -----CCccc---CcHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHhh
Confidence                 01111   2235677888999999999999999999999998653

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9e-47  Score=385.17  Aligned_cols=247  Identities=21%  Similarity=0.361  Sum_probs=194.8

Q ss_pred             hhccccccCcceEEEEEeC------CCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVLD------GGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~------~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||+||+|++.      ++..||||+++...   ..+++.+|++++++++||||++++++|...+..++|||
T Consensus        17 ~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~~v~e   96 (301)
T d1lufa_          17 YVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFE   96 (301)
T ss_dssp             EEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             EeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeeccCCceEEEEE
Confidence            3567999999999999864      35689999997652   24568899999999999999999999999999999999


Q ss_pred             ccCCCCHHHhhccCCC-------------------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEE
Q 006559          408 YLPHGSLHSLLHGSRG-------------------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVV  468 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~-------------------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl  468 (640)
                      |+++|+|.++++....                   .....++|..+++|+.|+|.||+|||+   .+||||||||+|||+
T Consensus        97 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~---~~ivHrDlKp~NILl  173 (301)
T d1lufa_          97 YMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE---RKFVHRDLATRNCLV  173 (301)
T ss_dssp             CCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEE
T ss_pred             ecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhccc---CCeEeeEEcccceEE
Confidence            9999999999864321                   112358999999999999999999995   459999999999999


Q ss_pred             CCCCCeEEccCCcccccCC--------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCC-CCCCCC
Q 006559          469 DQLGNACISDIGVHQLFHT--------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDG  539 (640)
Q Consensus       469 ~~~~~~kl~DfGl~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~-~p~~~~  539 (640)
                      |.++.+||+|||+++....        ...++..|+|||++       ....++.|+|||||||++|||+||. +||...
T Consensus       174 d~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~-------~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~  246 (301)
T d1lufa_         174 GENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESI-------FYNRYTTESDVWAYGVVLWEIFSYGLQPYYGM  246 (301)
T ss_dssp             CGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred             CCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHH-------ccCCCChhhhhccchhhHHHHHccCCCCCCCC
Confidence            9999999999999976532        23456789999964       4567889999999999999999986 566543


Q ss_pred             CcchHHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 006559          540 ELGIVKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIR  606 (640)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~  606 (640)
                      ..  .+....+.... ..       ..+.   ....++.+++.+||+.+|++||||.||+++|++|.
T Consensus       247 ~~--~e~~~~v~~~~-~~-------~~p~---~~~~~~~~li~~cl~~~P~~RPt~~ev~~~L~~i~  300 (301)
T d1lufa_         247 AH--EEVIYYVRDGN-IL-------ACPE---NCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMC  300 (301)
T ss_dssp             CH--HHHHHHHHTTC-CC-------CCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             CH--HHHHHHHHcCC-CC-------CCCc---cchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhc
Confidence            22  22222221111 00       0111   12235777889999999999999999999999985

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.3e-46  Score=380.94  Aligned_cols=239  Identities=18%  Similarity=0.253  Sum_probs=178.2

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      ..+.||+|+||+||+|+.. +++.||||.+...   .....+.+|++++++++|||||++++++.+++..|+|||||++|
T Consensus        13 ~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE~~~gg   92 (307)
T d1a06a_          13 FRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGG   92 (307)
T ss_dssp             EEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             EEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCC
Confidence            3578999999999999964 6889999998754   22345778999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC---CCCCeEEccCCcccccCC--
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD---QLGNACISDIGVHQLFHT--  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~---~~~~~kl~DfGl~~~~~~--  487 (640)
                      +|.+++....     .+++.....++.|++.||+|||+   .+||||||||+|||+.   +++.+||+|||+++....  
T Consensus        93 ~L~~~l~~~~-----~l~e~~~~~~~~qi~~al~ylH~---~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~  164 (307)
T d1a06a_          93 ELFDRIVEKG-----FYTERDASRLIFQVLDAVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGS  164 (307)
T ss_dssp             BHHHHHHTCS-----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSTTCCEEECCC----------
T ss_pred             cHHHhhhccc-----CCCHHHHHHHHHHHHHHHHhhhh---ceeeeEEecccceeecccCCCceEEEeccceeEEccCCC
Confidence            9999997643     58999999999999999999995   4599999999999994   578999999999987642  


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         ...+|+.|+|||++       ....++.++|||||||++|||+||+.||.+......  ..........   .... 
T Consensus       165 ~~~~~~GT~~y~APE~~-------~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~--~~~i~~~~~~---~~~~-  231 (307)
T d1a06a_         165 VLSTACGTPGYVAPEVL-------AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKL--FEQILKAEYE---FDSP-  231 (307)
T ss_dssp             --------CTTSCHHHH-------TTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH--HHHHHTTCCC---CCTT-
T ss_pred             eeeeeeeCccccCcHHH-------cCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHHH--HHHHhccCCC---CCCc-
Confidence               34578999999975       334678899999999999999999999975432211  1111111100   0000 


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       ..+..   ..++.+++.+||+.||++|||+.|+++
T Consensus       232 -~~~~~---s~~~~~li~~~L~~dP~~R~s~~eil~  263 (307)
T d1a06a_         232 -YWDDI---SDSAKDFIRHLMEKDPEKRFTCEQALQ  263 (307)
T ss_dssp             -TTTTS---CHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             -cccCC---CHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence             11112   234667788899999999999999875

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-46  Score=379.07  Aligned_cols=235  Identities=17%  Similarity=0.236  Sum_probs=190.4

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ..+.||+|+||+||+|+. .+++.||||++...     ...+.+.+|++++++++|||||++++++.+++..|+|||||+
T Consensus        12 i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy~~   91 (288)
T d1uu3a_          12 FGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAK   91 (288)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEECCCT
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEEEccC
Confidence            357899999999999996 46889999998643     234568899999999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                      +|+|.+++....     .+++..+..++.|++.||+|||+   .+||||||||+|||+++++.+||+|||+++.+..   
T Consensus        92 gg~L~~~~~~~~-----~l~e~~~~~~~~qi~~al~ylH~---~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~  163 (288)
T d1uu3a_          92 NGELLKYIRKIG-----SFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK  163 (288)
T ss_dssp             TEEHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECC----
T ss_pred             CCCHHHhhhccC-----CCCHHHHHHHHHHHHHHHHhhcc---ccEEcCcCCccccccCCCceEEecccccceecccCCc
Confidence            999999987553     58999999999999999999995   4599999999999999999999999999987632   


Q ss_pred             -----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccch
Q 006559          488 -----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       488 -----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  562 (640)
                           ...+|..|+|||++       ....++.++||||+||++|||+||+.||......  ...+.....         
T Consensus       164 ~~~~~~~~GT~~Y~APE~~-------~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~--~~~~~i~~~---------  225 (288)
T d1uu3a_         164 QARANSFVGTAQYVSPELL-------TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEY--LIFQKIIKL---------  225 (288)
T ss_dssp             ------CCCCGGGCCHHHH-------HTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHTT---------
T ss_pred             ccccccccCCccccCceee-------ccCCCCcccceehhhHHHHHHhhCCCCCCCcCHH--HHHHHHHcC---------
Confidence                 23578999999975       3456778999999999999999999999754321  111111111         


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ....+....   .++.+++.+||+.||++|||+.|+..
T Consensus       226 ~~~~p~~~s---~~~~~li~~~L~~dP~~R~t~~e~~~  260 (288)
T d1uu3a_         226 EYDFPEKFF---PKARDLVEKLLVLDATKRLGCEEMEG  260 (288)
T ss_dssp             CCCCCTTCC---HHHHHHHHTTSCSSGGGSTTSGGGTC
T ss_pred             CCCCCccCC---HHHHHHHHHHccCCHhHCcCHHHHcC
Confidence            111111222   24567788899999999999999754

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-45  Score=371.62  Aligned_cols=243  Identities=19%  Similarity=0.294  Sum_probs=185.5

Q ss_pred             hhccccccCcceEEEEEeCC----CcEEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          337 SAELLGKGCVGATYKVVLDG----GDVVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~----~~~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      ..+.||+|+||.||+|++..    +..||||.++..   ...+.+.+|++++++++|||||+++|++. .+..|+||||+
T Consensus        11 l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~iv~E~~   89 (273)
T d1mp8a_          11 LGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELC   89 (273)
T ss_dssp             EEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEEEEECC
T ss_pred             EEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeEEEEEEec
Confidence            35789999999999998643    346889988654   23456889999999999999999999996 56789999999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--  487 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--  487 (640)
                      ++|+|.+++....    ..+++..++.++.||++||+|||+   .+||||||||+||+++.++.+||+|||+++....  
T Consensus        90 ~~g~l~~~~~~~~----~~l~~~~~~~~~~qi~~gl~ylH~---~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~  162 (273)
T d1mp8a_          90 TLGELRSFLQVRK----YSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST  162 (273)
T ss_dssp             TTEEHHHHHHHTT----TTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECC-----------
T ss_pred             cCCcHHhhhhccC----CCCCHHHHHHHHHHHHHHhhhhcc---cCeeccccchhheeecCCCcEEEccchhheeccCCc
Confidence            9999999876543    258999999999999999999995   4599999999999999999999999999987542  


Q ss_pred             -----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcc-hHHHHHHhhccccccccc
Q 006559          488 -----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELG-IVKWVQMMGQDESAWEVF  560 (640)
Q Consensus       488 -----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~  560 (640)
                           ...+|..|+|||++       ....++.++|||||||++|||+| |++||...... +...+..   ...     
T Consensus       163 ~~~~~~~~gt~~y~apE~l-------~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~~i~~---~~~-----  227 (273)
T d1mp8a_         163 YYKASKGKLPIKWMAPESI-------NFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIEN---GER-----  227 (273)
T ss_dssp             --------CCGGGCCHHHH-------HHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHT---TCC-----
T ss_pred             ceeccceecCcccchhhHh-------ccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHc---CCC-----
Confidence                 22347889999964       44567889999999999999998 89998754322 2222211   110     


Q ss_pred             chhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          561 DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       561 d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                         ...++.   ...++.+++.+||+.||++|||+.||++.|+++..+
T Consensus       228 ---~~~~~~---~~~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~  269 (273)
T d1mp8a_         228 ---LPMPPN---CPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE  269 (273)
T ss_dssp             ---CCCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ---CCCCCC---CCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence               011112   223466788889999999999999999999998643

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-45  Score=379.22  Aligned_cols=241  Identities=20%  Similarity=0.317  Sum_probs=190.2

Q ss_pred             hccccccCcceEEEEEeC-CCc----EEEEEEeccc---cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVLD-GGD----VVVVKRIRER---KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~----~vavK~l~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~  409 (640)
                      .++||+|+||+||+|++. +|+    .||||+++..   ...+++.+|++++++++|||||+++|+|.++ ..++++||+
T Consensus        14 ~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~~~v~e~~   92 (317)
T d1xkka_          14 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQLITQLM   92 (317)
T ss_dssp             EEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SEEEEEECC
T ss_pred             eeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-CeeEEEEec
Confidence            578999999999999864 343    5899988654   3457799999999999999999999999864 678889999


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC-
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP-  488 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~-  488 (640)
                      .+|+|.+++....    ..+++..+++++.|||+||+|||+   .+||||||||+|||++.++.+||+|||+++..... 
T Consensus        93 ~~~~l~~~~~~~~----~~~~~~~~~~i~~qi~~gl~yLH~---~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~  165 (317)
T d1xkka_          93 PFGCLLDYVREHK----DNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE  165 (317)
T ss_dssp             TTCBHHHHHHHTS----SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTC
T ss_pred             cCCcccccccccc----cCCCHHHHHHHHHHHHHHHHHHHH---cCcccCcchhhcceeCCCCCeEeeccccceeccccc
Confidence            9999999887653    268999999999999999999995   45999999999999999999999999999876421 


Q ss_pred             -------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcch-HHHHHHhhcccccccc
Q 006559          489 -------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGI-VKWVQMMGQDESAWEV  559 (640)
Q Consensus       489 -------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~-~~~~~~~~~~~~~~~~  559 (640)
                             ..+|..|+|||++       ....++.++|||||||++|||+| |+.||.+..... ...+..   ...    
T Consensus       166 ~~~~~~~~~gt~~y~APE~l-------~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~~~~i~~---~~~----  231 (317)
T d1xkka_         166 KEYHAEGGKVPIKWMALESI-------LHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEK---GER----  231 (317)
T ss_dssp             C--------CCTTTSCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGHHHHHHH---TCC----
T ss_pred             ccccccccccCccccChHHH-------hcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHc---CCC----
Confidence                   2357899999965       34567899999999999999999 788987543322 221111   100    


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                          +..++   ....++.+++.+||+.||++||||.||++.|+++..
T Consensus       232 ----~~~p~---~~~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~~~  272 (317)
T d1xkka_         232 ----LPQPP---ICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR  272 (317)
T ss_dssp             ----CCCCT---TBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ----CCCCc---ccCHHHHHHHHHhCCCChhhCcCHHHHHHHHHHHHh
Confidence                11111   122356778889999999999999999999988764

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-45  Score=371.44  Aligned_cols=239  Identities=18%  Similarity=0.259  Sum_probs=190.2

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc--------cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER--------KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--------~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||+||+|+. .+|+.||||++...        ...+.+.+|++++++++|||||++++++.+.+..|+|||
T Consensus        14 ~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E   93 (293)
T d1jksa_          14 TGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILE   93 (293)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             EeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            357899999999999996 56899999998643        124678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC----CeEEccCCccc
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG----NACISDIGVHQ  483 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~----~~kl~DfGl~~  483 (640)
                      ||++|+|.+++....     .+++..+..++.|++.||+|||+.   +||||||||+|||++.++    .+|++|||+++
T Consensus        94 ~~~gg~L~~~i~~~~-----~l~~~~~~~~~~qi~~al~yLH~~---~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~  165 (293)
T d1jksa_          94 LVAGGELFDFLAEKE-----SLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAH  165 (293)
T ss_dssp             CCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred             cCCCccccchhcccc-----ccchhHHHHHHHHHHHHHHhhhhc---ceeecccccceEEEecCCCcccceEecchhhhh
Confidence            999999999997643     589999999999999999999954   599999999999999776    49999999998


Q ss_pred             ccCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccc
Q 006559          484 LFHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE  558 (640)
Q Consensus       484 ~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  558 (640)
                      ....     ...+|..|+|||++       ....++.++|||||||++|||+||+.||.+.....  ...........  
T Consensus       166 ~~~~~~~~~~~~~t~~y~APE~~-------~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~--~~~~i~~~~~~--  234 (293)
T d1jksa_         166 KIDFGNEFKNIFGTPEFVAPEIV-------NYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE--TLANVSAVNYE--  234 (293)
T ss_dssp             ECTTSCBCSCCCCCGGGCCHHHH-------TTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHTTCCC--
T ss_pred             hcCCCccccccCCCCcccCHHHH-------cCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHHH--HHHHHHhcCCC--
Confidence            7643     23568899999975       34567889999999999999999999997543211  11111111000  


Q ss_pred             ccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       559 ~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       ....     .......++.+++.+||+.||++|||+.|+++
T Consensus       235 -~~~~-----~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  270 (293)
T d1jksa_         235 -FEDE-----YFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ  270 (293)
T ss_dssp             -CCHH-----HHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             -CCch-----hcCCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence             0000     01112235667888999999999999999865

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=3.7e-45  Score=379.59  Aligned_cols=240  Identities=18%  Similarity=0.242  Sum_probs=190.8

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      ..+.||+|+||.||+|+. .+|+.||||++...  ...+.+.+|++++++++|||||++++++.+.+..|+|||||++|+
T Consensus        30 i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~  109 (350)
T d1koaa2          30 IHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGE  109 (350)
T ss_dssp             EEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECCCCSCB
T ss_pred             EEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCC
Confidence            357899999999999996 56889999999765  334668899999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC--CCCCeEEccCCcccccCCC---
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD--QLGNACISDIGVHQLFHTP---  488 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~--~~~~~kl~DfGl~~~~~~~---  488 (640)
                      |.+++....    ..+++..+..++.||+.||+|||+.   +||||||||+|||++  .++.+||+|||+++.....   
T Consensus       110 L~~~l~~~~----~~l~e~~~~~i~~qi~~aL~ylH~~---~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~  182 (350)
T d1koaa2         110 LFEKVADEH----NKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSV  182 (350)
T ss_dssp             HHHHHTCTT----SCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSCE
T ss_pred             HHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHhc---CCeeeeechhHeeeccCCCCeEEEeecchheeccccccc
Confidence            999996543    2589999999999999999999954   599999999999996  4688999999999876542   


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                        ..+|..|+|||++.       ...++.++||||+||++|||+||+.||.+...  .+..+........   .+..  .
T Consensus       183 ~~~~gT~~Y~aPEv~~-------~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~--~~~~~~i~~~~~~---~~~~--~  248 (350)
T d1koaa2         183 KVTTGTAEFAAPEVAE-------GKPVGYYTDMWSVGVLSYILLSGLSPFGGEND--DETLRNVKSCDWN---MDDS--A  248 (350)
T ss_dssp             EEECSCTTTCCHHHHH-------TCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTCCC---SCCG--G
T ss_pred             ceecCcccccCHHHHc-------CCCCChhHhhhhhhHHHHHHHhCCCCCCCCCH--HHHHHHHHhCCCC---CCcc--c
Confidence              35689999999753       34567899999999999999999999975422  2222222111100   0000  0


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ....   ..++.+++.+||+.||++|||+.|+++
T Consensus       249 ~~~~---s~~~~~li~~~L~~dP~~R~t~~eil~  279 (350)
T d1koaa2         249 FSGI---SEDGKDFIRKLLLADPNTRMTIHQALE  279 (350)
T ss_dssp             GGGC---CHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             ccCC---CHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            0111   234567788899999999999999876

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-46  Score=373.88  Aligned_cols=241  Identities=21%  Similarity=0.304  Sum_probs=182.1

Q ss_pred             hccccccCcceEEEEEeCC--C--cEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVLDG--G--DVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~--~--~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      .+.||+|+||.||+|++..  +  ..||||+++..     ...+++.+|++++++++|||||+++|+|.+ +..++||||
T Consensus        13 ~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~~lv~e~   91 (273)
T d1u46a_          13 LEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPMKMVTEL   91 (273)
T ss_dssp             EEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred             EEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cchheeeee
Confidence            5679999999999998632  2  36899988653     223578899999999999999999999975 467899999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP  488 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~  488 (640)
                      |++|++.+++....    .++++..++.++.|+|.||+|||+   .+|+||||||+|||++.++.+||+|||+++.....
T Consensus        92 ~~~~~l~~~~~~~~----~~l~~~~~~~~~~qi~~gl~ylH~---~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~  164 (273)
T d1u46a_          92 APLGSLLDRLRKHQ----GHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQN  164 (273)
T ss_dssp             CTTCBHHHHHHHHG----GGSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-
T ss_pred             ecCcchhhhhhccc----CCCCHHHHHHHHHHHHHHHHHhhh---CCEeeeeecHHHhccccccceeeccchhhhhcccC
Confidence            99999999877543    258999999999999999999995   45999999999999999999999999999876422


Q ss_pred             ---------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHHHHHHhhccccccc
Q 006559          489 ---------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVKWVQMMGQDESAWE  558 (640)
Q Consensus       489 ---------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~  558 (640)
                               ..++..|+|||++       ....++.++|||||||++|||+| |+.||.+....  +............ 
T Consensus       165 ~~~~~~~~~~~~~~~~~aPE~~-------~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~--~~~~~i~~~~~~~-  234 (273)
T d1u46a_         165 DDHYVMQEHRKVPFAWCAPESL-------KTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS--QILHKIDKEGERL-  234 (273)
T ss_dssp             CCEEEC-----CCGGGCCHHHH-------HHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHTSCCCC-
T ss_pred             CCcceecCccccCcccCCHHHH-------hCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHH--HHHHHHHhCCCCC-
Confidence                     2346689999965       34567789999999999999998 89999753322  2122222111100 


Q ss_pred             ccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 006559          559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDI  605 (640)
Q Consensus       559 ~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i  605 (640)
                            .....   ...++.+++..||+.||++||||.+|++.|++.
T Consensus       235 ------~~~~~---~~~~l~~li~~cl~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         235 ------PRPED---CPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             ------CCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ------CCccc---ccHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence                  01111   123466788889999999999999999999875

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=5.9e-45  Score=378.38  Aligned_cols=240  Identities=18%  Similarity=0.259  Sum_probs=190.9

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccc--cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRER--KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      ..+.||+|+||+||+|+. .+|+.||||++...  ...+.+.+|++++++++|||||++++++.+++..|+|||||++|+
T Consensus        33 i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~  112 (352)
T d1koba_          33 ILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGE  112 (352)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCCB
T ss_pred             EEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCh
Confidence            357899999999999996 56899999998765  234567889999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC--CCCCeEEccCCcccccCCC---
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD--QLGNACISDIGVHQLFHTP---  488 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~--~~~~~kl~DfGl~~~~~~~---  488 (640)
                      |.+++....    .++++.....++.||+.||+|||+   .+||||||||+|||++  .++.+||+|||+++.+...   
T Consensus       113 L~~~~~~~~----~~l~e~~~~~i~~qi~~aL~ylH~---~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~~  185 (352)
T d1koba_         113 LFDRIAAED----YKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIV  185 (352)
T ss_dssp             HHHHTTCTT----CCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCE
T ss_pred             HHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccccccccccccCCCeEEEeecccceecCCCCce
Confidence            998876543    258999999999999999999995   4599999999999998  6789999999999887542   


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhcc
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIM  566 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  566 (640)
                        ..+|..|+|||++       ....++.++||||+||++|||+||+.||.+....  ............   ....  .
T Consensus       186 ~~~~gt~~y~aPE~~-------~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~--~~~~~i~~~~~~---~~~~--~  251 (352)
T d1koba_         186 KVTTATAEFAAPEIV-------DREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDL--ETLQNVKRCDWE---FDED--A  251 (352)
T ss_dssp             EEECSSGGGCCHHHH-------TTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH--HHHHHHHHCCCC---CCSS--T
T ss_pred             eeccCcccccCHHHH-------cCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhCCCC---CCcc--c
Confidence              3568899999975       3455778999999999999999999999754322  111111111000   0000  0


Q ss_pred             ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          567 DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       567 ~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ..   ....++.+++.+||+.||++|||+.|+++
T Consensus       252 ~~---~~s~~~~~li~~~L~~dp~~R~s~~eil~  282 (352)
T d1koba_         252 FS---SVSPEAKDFIKNLLQKEPRKRLTVHDALE  282 (352)
T ss_dssp             TT---TSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             cc---CCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            01   12234667888899999999999999965

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-45  Score=375.57  Aligned_cols=249  Identities=23%  Similarity=0.357  Sum_probs=193.4

Q ss_pred             hccccccCcceEEEEEeCC-Cc--EEEEEEeccc---cchHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLDG-GD--VVVVKRIRER---KKKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~-~~--~vavK~l~~~---~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      .++||+|+||+||+|++.+ +.  .||||+++..   ...+++.+|++++.++ +|||||+++|+|..++..++||||++
T Consensus        15 ~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV~ey~~   94 (309)
T d1fvra_          15 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAP   94 (309)
T ss_dssp             EEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCCT
T ss_pred             EEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEEEEecC
Confidence            5789999999999999754 33  4788887644   2345789999999998 79999999999999999999999999


Q ss_pred             CCCHHHhhccCC-----------CCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccC
Q 006559          411 HGSLHSLLHGSR-----------GPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDI  479 (640)
Q Consensus       411 ~gsL~~~l~~~~-----------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~Df  479 (640)
                      +|+|.++++...           ......++|..+.+++.|||.||.|||+   .+|+||||||+|||++.++.+||+||
T Consensus        95 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~---~~iiHrDlkp~NIL~~~~~~~kl~Df  171 (309)
T d1fvra_          95 HGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADF  171 (309)
T ss_dssp             TCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECGGGCEEECCT
T ss_pred             CCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhc---CCccccccccceEEEcCCCceEEccc
Confidence            999999997542           1122368999999999999999999995   45999999999999999999999999


Q ss_pred             CcccccCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCC-CCCCCCCcchHHHHHHhhcc
Q 006559          480 GVHQLFHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELGIVKWVQMMGQD  553 (640)
Q Consensus       480 Gl~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~-~p~~~~~~~~~~~~~~~~~~  553 (640)
                      |+++....     ...+|..|+|||.+       ....++.++|||||||++|||+||. +||....  ..+..+.+...
T Consensus       172 G~a~~~~~~~~~~~~~gt~~y~aPE~l-------~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~--~~~~~~~i~~~  242 (309)
T d1fvra_         172 GLSRGQEVYVKKTMGRLPVRWMAIESL-------NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT--CAELYEKLPQG  242 (309)
T ss_dssp             TCEESSCEECCC----CCTTTCCHHHH-------HHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC--HHHHHHHGGGT
T ss_pred             cccccccccccccceecCCcccchHHh-------ccCCCCccceeehhHHHHHHHHhcCCCCCCCCC--HHHHHHHHHhc
Confidence            99976542     23457899999965       4456788999999999999999975 5665432  22222222211


Q ss_pred             cccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 006559          554 ESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG  609 (640)
Q Consensus       554 ~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~  609 (640)
                      ..      +.  .+...   ..++.+++.+||+.||++||||.||++.|+++....
T Consensus       243 ~~------~~--~~~~~---~~~~~~li~~cl~~dP~~RPs~~eil~~L~~i~~~~  287 (309)
T d1fvra_         243 YR------LE--KPLNC---DDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEER  287 (309)
T ss_dssp             CC------CC--CCTTB---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred             CC------CC--CCccC---CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcC
Confidence            10      11  11112   234667788899999999999999999999987653

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-45  Score=374.90  Aligned_cols=247  Identities=21%  Similarity=0.325  Sum_probs=194.0

Q ss_pred             hccccccCcceEEEEEeC------CCcEEEEEEecccc---chHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEEEe
Q 006559          338 AELLGKGCVGATYKVVLD------GGDVVVVKRIRERK---KKREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~------~~~~vavK~l~~~~---~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      .++||+|+||.||+|++.      .+..||||+++...   ...++.+|+.+++++ +|||||+++|+|.+.+..++|||
T Consensus        28 ~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~~~lvmE  107 (311)
T d1t46a_          28 GKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITE  107 (311)
T ss_dssp             EEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             eeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCEEEEEEE
Confidence            578999999999999863      35679999997652   345678899999998 69999999999999999999999


Q ss_pred             ccCCCCHHHhhccCCC-------------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCe
Q 006559          408 YLPHGSLHSLLHGSRG-------------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNA  474 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~-------------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~  474 (640)
                      ||++|+|.++++....             .....+++..+.+++.|||+||+|||+.   +||||||||+|||++.++.+
T Consensus       108 ~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~---~ivHrDLKp~NIl~~~~~~~  184 (311)
T d1t46a_         108 YCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILLTHGRIT  184 (311)
T ss_dssp             CCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEETTTEE
T ss_pred             cCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccccccccccccCcc
Confidence            9999999999976532             1223589999999999999999999954   59999999999999999999


Q ss_pred             EEccCCcccccCC--------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcch--
Q 006559          475 CISDIGVHQLFHT--------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGI--  543 (640)
Q Consensus       475 kl~DfGl~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~--  543 (640)
                      |++|||+++....        ...+|..|+|||++       ....++.++|||||||++|||+| |++|+.......  
T Consensus       185 ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~~  257 (311)
T d1t46a_         185 KICDFGLARDIKNDSNYVVKGNARLPVKWMAPESI-------FNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKF  257 (311)
T ss_dssp             EECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHH
T ss_pred             cccccchheeccCCCcceEeeecccChHHcCHHHh-------cCCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHHHH
Confidence            9999999987542        23457889999964       45667899999999999999999 555554432221  


Q ss_pred             HHHHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          544 VKWVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       544 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ...++...+           ...+..   ...++.+++.+||+.||++||||.+|+++|+++..+
T Consensus       258 ~~~i~~~~~-----------~~~~~~---~~~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~i~~  308 (311)
T d1t46a_         258 YKMIKEGFR-----------MLSPEH---APAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE  308 (311)
T ss_dssp             HHHHHHTCC-----------CCCCTT---SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCC-----------CCCccc---ccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhhcc
Confidence            111111110           011111   223567788899999999999999999999987654

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-44  Score=369.79  Aligned_cols=234  Identities=21%  Similarity=0.300  Sum_probs=189.9

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||+||+|+. .+|+.||||+++..     ...+.+.+|+.++++++|||||++++++.+.+..|+|||||++
T Consensus         9 ~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~g   88 (316)
T d1fota_           9 LRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEG   88 (316)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             EEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEeeecCC
Confidence            57899999999999996 56899999999743     2346688999999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---C
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---P  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---~  488 (640)
                      |+|..++....     .+++.....++.||+.||+|||+   .+||||||||+|||++.++.+||+|||+++....   .
T Consensus        89 g~l~~~~~~~~-----~~~~~~~~~~~~qi~~al~~lH~---~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~~~  160 (316)
T d1fota_          89 GELFSLLRKSQ-----RFPNPVAKFYAAEVCLALEYLHS---KDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYT  160 (316)
T ss_dssp             CBHHHHHHHTS-----SCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCC
T ss_pred             ccccccccccc-----cccccHHHHHHHHHHHhhhhhcc---CcEEccccCchheeEcCCCCEEEecCccceEecccccc
Confidence            99999987654     47788888999999999999994   5699999999999999999999999999988653   3


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..+|+.|+|||++       ....++.++||||+||++|||+||+.||.+....  +..+.....         ....++
T Consensus       161 ~~Gt~~Y~APE~l-------~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~--~~~~~i~~~---------~~~~p~  222 (316)
T d1fota_         161 LCGTPDYIAPEVV-------STKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTM--KTYEKILNA---------ELRFPP  222 (316)
T ss_dssp             CCSCTTTCCHHHH-------TTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHHC---------CCCCCT
T ss_pred             ccCcccccCHHHH-------cCCCCCchhhccccchhHHHHHhCCCCCCCcCHH--HHHHHHHcC---------CCCCCC
Confidence            4679999999975       3445778999999999999999999999754321  111111111         111111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRP-----NMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RP-----s~~~v~~  600 (640)
                      ..++   ++.+++.+||+.||++||     |+.++++
T Consensus       223 ~~s~---~~~~li~~~L~~dp~~R~~~~r~t~~~il~  256 (316)
T d1fota_         223 FFNE---DVKDLLSRLITRDLSQRLGNLQNGTEDVKN  256 (316)
T ss_dssp             TSCH---HHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             CCCH---HHHHHHHHHhhhCHHhccccchhhHHHHHc
Confidence            2222   356677789999999996     8888864

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-45  Score=373.38  Aligned_cols=249  Identities=22%  Similarity=0.295  Sum_probs=196.0

Q ss_pred             hhccccccCcceEEEEEeC------CCcEEEEEEeccccc---hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEe
Q 006559          337 SAELLGKGCVGATYKVVLD------GGDVVVVKRIRERKK---KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYD  407 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~------~~~~vavK~l~~~~~---~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~E  407 (640)
                      ..+.||+|+||+||+|.+.      .+..||||+++....   ...+.+|+.++++++|||||+++|+|..++..++|||
T Consensus        24 l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lv~e  103 (308)
T d1p4oa_          24 MSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIME  103 (308)
T ss_dssp             EEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             EeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCceeEEEe
Confidence            3578999999999999864      256899999976532   3457899999999999999999999999999999999


Q ss_pred             ccCCCCHHHhhccCC-----CCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcc
Q 006559          408 YLPHGSLHSLLHGSR-----GPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVH  482 (640)
Q Consensus       408 y~~~gsL~~~l~~~~-----~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~  482 (640)
                      ||++|+|.+++....     ......++|..+.+++.|+|+||.|||+   .+|+||||||+|||+|+++.+||+|||++
T Consensus       104 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~---~~ivHrDlk~~NiLld~~~~~Kl~DFGla  180 (308)
T d1p4oa_         104 LMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMT  180 (308)
T ss_dssp             CCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCSGGGEEECTTCCEEECCTTCC
T ss_pred             ecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhh---CCeeeceEcCCceeecCCceEEEeecccc
Confidence            999999999886432     1122357899999999999999999995   45999999999999999999999999999


Q ss_pred             cccCC--------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCC-CCCCCCCcchHHHHHHhhcc
Q 006559          483 QLFHT--------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGK-MAKGDGELGIVKWVQMMGQD  553 (640)
Q Consensus       483 ~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~-~p~~~~~~~~~~~~~~~~~~  553 (640)
                      +....        ...++..|+|||.+       ....++.++|||||||++|||+||. .||.+.  ...++...+...
T Consensus       181 ~~~~~~~~~~~~~~~~~t~~y~aPe~l-------~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~--~~~~~~~~i~~~  251 (308)
T d1p4oa_         181 RDIYETDYYRKGGKGLLPVRWMSPESL-------KDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL--SNEQVLRFVMEG  251 (308)
T ss_dssp             CGGGGGGCEEGGGSSEECGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS--CHHHHHHHHHTT
T ss_pred             eeccCCcceeeccceecccccCCHHHH-------ccCCCCcccccccHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHhC
Confidence            86532        23457889999964       4556788999999999999999985 666542  333333332221


Q ss_pred             cccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          554 ESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       554 ~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                      ...    +    .+.   .....+.+++.+||+.+|++||||.+|+++|++..+.
T Consensus       252 ~~~----~----~p~---~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~~  295 (308)
T d1p4oa_         252 GLL----D----KPD---NCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEP  295 (308)
T ss_dssp             CCC----C----CCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCT
T ss_pred             CCC----C----Ccc---cchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCC
Confidence            110    0    111   1223577788899999999999999999999887543

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-45  Score=372.22  Aligned_cols=248  Identities=21%  Similarity=0.316  Sum_probs=180.4

Q ss_pred             hccccccCcceEEEEEeCC------CcEEEEEEecccc---chHHHHHHHHHHhcc-CCCcccceeEEEEcC-CeEEEEE
Q 006559          338 AELLGKGCVGATYKVVLDG------GDVVVVKRIRERK---KKREVDEWLRVIGGL-RHSNIVSIRAYCNGK-DELFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~------~~~vavK~l~~~~---~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~-~~~~lV~  406 (640)
                      .+.||+|+||.||+|+..+      ++.||||+++...   ..+.+.+|...+.++ +|+|||.+++++... ...++||
T Consensus        18 ~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~~iv~   97 (299)
T d1ywna1          18 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIV   97 (299)
T ss_dssp             EEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEEE
T ss_pred             eeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCCeEEEEE
Confidence            5789999999999998532      4579999997652   234566666666665 689999999998765 4689999


Q ss_pred             eccCCCCHHHhhccCCC-----------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeE
Q 006559          407 DYLPHGSLHSLLHGSRG-----------PGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNAC  475 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~-----------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~k  475 (640)
                      |||++|+|.++++....           .....++|..++.++.|||+||+|||+.   +||||||||+|||+++++.+|
T Consensus        98 E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~---~ivHrDlKp~NILl~~~~~~K  174 (299)
T d1ywna1          98 EFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVK  174 (299)
T ss_dssp             ECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEE
T ss_pred             EecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhC---CCcCCcCCccceeECCCCcEE
Confidence            99999999999975431           0123589999999999999999999954   599999999999999999999


Q ss_pred             EccCCcccccCC--------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhC-CCCCCCCCcchHHH
Q 006559          476 ISDIGVHQLFHT--------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTG-KMAKGDGELGIVKW  546 (640)
Q Consensus       476 l~DfGl~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg-~~p~~~~~~~~~~~  546 (640)
                      |+|||+++....        ...+|..|+|||++       ....++.++|||||||++|||+|| +.||....... ..
T Consensus       175 l~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l-------~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~-~~  246 (299)
T d1ywna1         175 ICDFGLARDIYKDPDYVRKGDARLPLKWMAPETI-------FDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-EF  246 (299)
T ss_dssp             ECC------CCSCTTSCCTTSCCCGGGGCCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSH-HH
T ss_pred             EccCcchhhccccccccccCceeeCccccchhHh-------hcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHH-HH
Confidence            999999986532        23468899999965       345678999999999999999997 45776433221 11


Q ss_pred             HHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          547 VQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       547 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                      .+........        ..+.   ....++.+++.+||+.||++||||.||++.|+++.+
T Consensus       247 ~~~~~~~~~~--------~~~~---~~~~~l~~li~~cl~~dP~~Rpt~~eil~~L~~ilq  296 (299)
T d1ywna1         247 CRRLKEGTRM--------RAPD---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  296 (299)
T ss_dssp             HHHHHHTCCC--------CCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCC--------CCCc---cCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence            1111111100        0111   122356778889999999999999999999998753

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=7.3e-45  Score=365.39  Aligned_cols=245  Identities=18%  Similarity=0.239  Sum_probs=192.4

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEecccc-----------chHHHHHHHHHHhccC-CCcccceeEEEEcCCeEE
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-----------KKREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELF  403 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----------~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~  403 (640)
                      ..+.||+|+||+||+|+. .+|+.||||++....           ..+.+.+|+.++++++ |||||++++++.+++..|
T Consensus         7 ~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~   86 (277)
T d1phka_           7 PKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFF   86 (277)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred             EceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccCcceE
Confidence            357899999999999996 578899999986531           1234778999999997 999999999999999999


Q ss_pred             EEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccc
Q 006559          404 LVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ  483 (640)
Q Consensus       404 lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~  483 (640)
                      ||||||++|+|.++++...     ++++..+..++.||+.||+|||.   .+|+||||||+|||++.++.+||+|||+++
T Consensus        87 ivmE~~~~g~L~~~l~~~~-----~l~e~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nill~~~~~~kl~DFG~a~  158 (277)
T d1phka_          87 LVFDLMKKGELFDYLTEKV-----TLSEKETRKIMRALLEVICALHK---LNIVHRDLKPENILLDDDMNIKLTDFGFSC  158 (277)
T ss_dssp             EEEECCTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             EEEEcCCCchHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---cCCcccccccceEEEcCCCCeEEccchhee
Confidence            9999999999999997543     58999999999999999999995   459999999999999999999999999998


Q ss_pred             ccCC-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccc
Q 006559          484 LFHT-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE  558 (640)
Q Consensus       484 ~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  558 (640)
                      ....     ...+|..|+|||++..... .....++.++||||+||++|||+||+.||.+.......  +........  
T Consensus       159 ~~~~~~~~~~~~gt~~y~~PE~~~~~~~-~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~~~--~~i~~~~~~--  233 (277)
T d1phka_         159 QLDPGEKLREVCGTPSYLAPEIIECSMN-DNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLML--RMIMSGNYQ--  233 (277)
T ss_dssp             ECCTTCCBCCCCSCGGGCCHHHHHHHHC-TTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH--HHHHHTCCC--
T ss_pred             EccCCCceeeeeccCCCCCHHHhhcccc-ccCCCCCchheEcccchhhhhhccCCCCCCCCCHHHHH--HHHHhCCCC--
Confidence            7643     2456889999998653321 22345788999999999999999999999864422211  111111000  


Q ss_pred             ccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       559 ~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                         .........   ..++.+++.+||++||++|||+.||++
T Consensus       234 ---~~~~~~~~~---s~~~~~li~~~L~~~p~~R~s~~eil~  269 (277)
T d1phka_         234 ---FGSPEWDDY---SDTVKDLVSRFLVVQPQKRYTAEEALA  269 (277)
T ss_dssp             ---CCTTTGGGS---CHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             ---CCCcccccC---CHHHHHHHHHHccCChhHCcCHHHHHc
Confidence               000001112   234667788899999999999999854

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-44  Score=367.58  Aligned_cols=247  Identities=21%  Similarity=0.345  Sum_probs=189.4

Q ss_pred             hccccccCcceEEEEEeCC--------CcEEEEEEeccccc---hHHHHHHHHHHhcc-CCCcccceeEEEEcCCeEEEE
Q 006559          338 AELLGKGCVGATYKVVLDG--------GDVVVVKRIRERKK---KREVDEWLRVIGGL-RHSNIVSIRAYCNGKDELFLV  405 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~--------~~~vavK~l~~~~~---~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lV  405 (640)
                      .+.||+|+||.||+|+..+        +..||||+++....   ..++.+|...+.++ +|||||+++++|.+++..++|
T Consensus        18 ~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~~~~~v   97 (299)
T d1fgka_          18 GKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVI   97 (299)
T ss_dssp             EEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred             eeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccCCeEEEE
Confidence            5689999999999998532        24699999976532   35567788888777 899999999999999999999


Q ss_pred             EeccCCCCHHHhhccCCCC-----------CCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCe
Q 006559          406 YDYLPHGSLHSLLHGSRGP-----------GRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNA  474 (640)
Q Consensus       406 ~Ey~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~  474 (640)
                      ||||++|+|.+++......           ....+++..+++++.|+|.||+|||+   .+||||||||+|||++.++.+
T Consensus        98 ~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~---~~ivHrDiKp~NiLl~~~~~~  174 (299)
T d1fgka_          98 VEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVM  174 (299)
T ss_dssp             ECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCE
T ss_pred             EEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhh---CCEEeeeecccceeecCCCCe
Confidence            9999999999999765321           12358999999999999999999995   459999999999999999999


Q ss_pred             EEccCCcccccCCC--------ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCcchHH
Q 006559          475 CISDIGVHQLFHTP--------FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILT-GKMAKGDGELGIVK  545 (640)
Q Consensus       475 kl~DfGl~~~~~~~--------~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~t-g~~p~~~~~~~~~~  545 (640)
                      ||+|||+++.....        ..++..|+|||++       ....++.|+|||||||++|||+| |+.||.+.....+ 
T Consensus       175 kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l-------~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~~-  246 (299)
T d1fgka_         175 KIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEAL-------FDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEEL-  246 (299)
T ss_dssp             EECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHH-------HHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHH-
T ss_pred             EeccchhhccccccccccccccCCCChhhhhhhHh-------cCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHHHH-
Confidence            99999998876432        3457789999964       45678899999999999999998 6888875443222 


Q ss_pred             HHHHhhcccccccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 006559          546 WVQMMGQDESAWEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRT  607 (640)
Q Consensus       546 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~  607 (640)
                       .+........        ..+..   ...++.+++.+||+.||++|||+.||++.|++|.+
T Consensus       247 -~~~i~~~~~~--------~~p~~---~~~~l~~li~~cl~~dP~~Rps~~eil~~L~~i~a  296 (299)
T d1fgka_         247 -FKLLKEGHRM--------DKPSN---CTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVA  296 (299)
T ss_dssp             -HHHHHTTCCC--------CCCSS---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -HHHHHcCCCC--------CCCcc---chHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHhh
Confidence             1111111100        01111   12346778889999999999999999999999864

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-44  Score=371.40  Aligned_cols=234  Identities=21%  Similarity=0.292  Sum_probs=189.6

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .++||+|+||.||+|+. .+|+.||||+++..     ...+.+.+|++++++++|||||++++++.+.+.+|+|||||++
T Consensus        10 ~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~ey~~g   89 (337)
T d1o6la_          10 LKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANG   89 (337)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred             EEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccceeccCC
Confidence            56899999999999996 56899999999754     2345678899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC----
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~----  487 (640)
                      |+|.+++....     .++......++.|++.||+|||+.   +||||||||+|||++.+|.+||+|||+++....    
T Consensus        90 g~L~~~~~~~~-----~~~e~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~~  161 (337)
T d1o6la_          90 GELFFHLSRER-----VFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT  161 (337)
T ss_dssp             CBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCC
T ss_pred             Cchhhhhhccc-----CCcHHHHHHHHHHHhhhhhhhhhc---CccccccCHHHeEecCCCCEEEeecccccccccCCcc
Confidence            99999998654     578889999999999999999954   599999999999999999999999999986532    


Q ss_pred             --CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhc
Q 006559          488 --PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELI  565 (640)
Q Consensus       488 --~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  565 (640)
                        ..++|+.|+|||++       ....++.++||||+||++|||+||+.||.+.....  ..+.....         ...
T Consensus       162 ~~~~~GT~~Y~aPE~~-------~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~--~~~~i~~~---------~~~  223 (337)
T d1o6la_         162 MKTFCGTPEYLAPEVL-------EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER--LFELILME---------EIR  223 (337)
T ss_dssp             BCCCEECGGGCCGGGG-------SSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHC---------CCC
T ss_pred             cccceeCHHHhhhhhc-------cCCCCChhhcccchhhHHHHHHHCCCCCCCcCHHH--HHHHHhcC---------CCC
Confidence              24578999999974       44567889999999999999999999997644321  11111111         111


Q ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHH
Q 006559          566 MDKEMEEEMRALLQVALLCLAPLPKDRPN-----MSIVHR  600 (640)
Q Consensus       566 ~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs-----~~~v~~  600 (640)
                      .+...+.   ++.+++..||+.||++||+     +.|+.+
T Consensus       224 ~p~~~s~---~~~dli~~~L~~dP~~R~~~~~~~~~eil~  260 (337)
T d1o6la_         224 FPRTLSP---EAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             CCTTSCH---HHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             CCccCCH---HHHHHHHhhccCCchhhcccccccHHHHHc
Confidence            1122223   3556778899999999995     667754

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-44  Score=376.64  Aligned_cols=238  Identities=19%  Similarity=0.225  Sum_probs=185.7

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHH---HHHHHHhccCCCcccceeEEEEcCCeEEEEEec
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVD---EWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDY  408 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~---~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey  408 (640)
                      .++||+|+||.||+|+.. +|+.||||++...     .....+.   .++++++.++|||||++++++...+..|+||||
T Consensus         9 ~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~ivmE~   88 (364)
T d1omwa3           9 HRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDL   88 (364)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             eeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEEEEEEe
Confidence            578999999999999964 6899999998643     1222233   346778888999999999999999999999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-
Q 006559          409 LPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-  487 (640)
Q Consensus       409 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-  487 (640)
                      |++|+|.+++....     .+++..+..++.||+.||+|||+   .+||||||||+|||++.++.+||+|||+++.+.. 
T Consensus        89 ~~gg~L~~~l~~~~-----~~~e~~~~~~~~qi~~aL~ylH~---~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~  160 (364)
T d1omwa3          89 MNGGDLHYHLSQHG-----VFSEADMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK  160 (364)
T ss_dssp             CCSCBHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECSSSCEEECCCTTCEECSSS
T ss_pred             cCCCcHHHHHHhcc-----cccHHHHHHHHHHHHHHHHHHHH---CCccceeeccceeEEcCCCcEEEeeeceeeecCCC
Confidence            99999999997643     57889999999999999999995   4599999999999999999999999999987653 


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         ...+|+.|+|||++.      ....++.++|||||||++|||+||+.||..........+.......        ..
T Consensus       161 ~~~~~~GT~~y~APE~~~------~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~--------~~  226 (364)
T d1omwa3         161 KPHASVGTHGYMAPEVLQ------KGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTM--------AV  226 (364)
T ss_dssp             CCCSCCSCGGGCCHHHHS------TTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSC--------CC
T ss_pred             cccccccccccchhHHhh------cCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccC--------CC
Confidence               345799999999753      2345788999999999999999999999854332222211111110        01


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPN-----MSIVHR  600 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs-----~~~v~~  600 (640)
                      ..+...+.   ++.+++.+||+.||++|||     +.|+++
T Consensus       227 ~~~~~~s~---~~~~li~~~L~~dP~~R~t~~~~~a~eil~  264 (364)
T d1omwa3         227 ELPDSFSP---ELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  264 (364)
T ss_dssp             CCCSSSCH---HHHHHHHHHTCSSTTTSTTTSSSTHHHHHT
T ss_pred             CCCCCCCH---HHHHHHHHHcccCHHHhCCCcccCHHHHHc
Confidence            11111222   4566778899999999999     466653

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.8e-44  Score=363.79  Aligned_cols=245  Identities=20%  Similarity=0.257  Sum_probs=189.0

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc-----chHHHHHHHHHHhccCCCcccceeEEEEcCC----eEEEEEe
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKD----ELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~----~~~lV~E  407 (640)
                      .+.||+|+||+||+|+. .+|+.||||+++...     ..+.+.+|++++++++|||||++++++...+    ..|+|||
T Consensus        12 ~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~~lvmE   91 (277)
T d1o6ya_          12 GEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVME   91 (277)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred             eEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceEEEEEE
Confidence            56899999999999995 578899999997542     2345788999999999999999999987643    4899999


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      |+++|+|.+++....     ++++.....++.|++.||+|||+   .+||||||||+|||++.++..+++|||.++....
T Consensus        92 ~~~g~~L~~~~~~~~-----~l~~~~~~~i~~qi~~al~~lH~---~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~  163 (277)
T d1o6ya_          92 YVDGVTLRDIVHTEG-----PMTPKRAIEVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFGIARAIAD  163 (277)
T ss_dssp             CCCEEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTSCEEECCCTTCEECC-
T ss_pred             CCCCCEehhhhcccC-----CCCHHHHHHHHHHHHHHHHHHHh---CCccCccccCcccccCccccceeehhhhhhhhcc
Confidence            999999999987553     58999999999999999999995   4599999999999999999999999998865432


Q ss_pred             ---------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhccccccc
Q 006559          488 ---------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWE  558 (640)
Q Consensus       488 ---------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  558 (640)
                               ...+|..|+|||++       ....++.++|||||||++|||+||+.||......  +...........  
T Consensus       164 ~~~~~~~~~~~~Gt~~Y~aPE~~-------~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~--~~~~~~~~~~~~--  232 (277)
T d1o6ya_         164 SGNSVTQTAAVIGTAQYLSPEQA-------RGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPV--SVAYQHVREDPI--  232 (277)
T ss_dssp             ---------------TTCCHHHH-------TTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHHHHCCCC--
T ss_pred             ccccccccccccCcccccCHHHH-------cCCCCCcceecccchHHHHHHHhCCCCCCCcCHH--HHHHHHHhcCCC--
Confidence                     23568999999975       3345778999999999999999999999754322  111111111100  


Q ss_pred             ccchhhccChHHHHHHHHHHHHHHHccCCCCCCCC-CHHHHHHHHHHhhc
Q 006559          559 VFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRP-NMSIVHRMIEDIRT  607 (640)
Q Consensus       559 ~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RP-s~~~v~~~L~~i~~  607 (640)
                        .+. ...+..   ..++.+++.+||+.||++|| |++++...|.+++.
T Consensus       233 --~~~-~~~~~~---s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~~n  276 (277)
T d1o6ya_         233 --PPS-ARHEGL---SADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN  276 (277)
T ss_dssp             --CGG-GTSSSC---CHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHC
T ss_pred             --CCc-hhccCC---CHHHHHHHHHHccCCHhHCHhHHHHHHHHHHHHhC
Confidence              000 011112   23466777889999999999 89999999988763

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-45  Score=370.75  Aligned_cols=248  Identities=20%  Similarity=0.322  Sum_probs=185.1

Q ss_pred             ccccccCcceEEEEEe-CCCcEEEEEEeccccc-------hHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          339 ELLGKGCVGATYKVVL-DGGDVVVVKRIRERKK-------KREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~-------~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      ++||+|+||+||+|+. .+|+.||||+++....       .+.+.+|++++++++|||||++++++..++..|+||||++
T Consensus         4 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~~   83 (299)
T d1ua2a_           4 DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFME   83 (299)
T ss_dssp             EEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECCS
T ss_pred             eEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhhc
Confidence            5799999999999996 4689999999864411       2457889999999999999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                      ++++..+.....     .+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+||+|||+++....   
T Consensus        84 ~~~~~~~~~~~~-----~l~~~~~~~~~~qil~aL~~lH~---~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~  155 (299)
T d1ua2a_          84 TDLEVIIKDNSL-----VLTPSHIKAYMLMTLQGLEYLHQ---HWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNR  155 (299)
T ss_dssp             EEHHHHHTTCCS-----SCCSSHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCC
T ss_pred             chHHhhhhhccc-----CCCHHHHHHHHHHHHHHHHHhhc---cceecccCCcceEEecCCCccccccCccccccCCCcc
Confidence            988777665332     57788899999999999999995   4599999999999999999999999999987643   


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCc-chHH-HHHHhhccc-cccc-c-
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGEL-GIVK-WVQMMGQDE-SAWE-V-  559 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~-~~~~-~~~~~~~~~-~~~~-~-  559 (640)
                         ...+|..|+|||++.      ....++.++|||||||++|||+||+.||..... +... ..+...... ..+. . 
T Consensus       156 ~~~~~~gt~~y~aPE~~~------~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~  229 (299)
T d1ua2a_         156 AYTHQVVTRWYRAPELLF------GARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMC  229 (299)
T ss_dssp             CCCCSCCCCTTCCHHHHT------TCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTT
T ss_pred             cccceecChhhccHHHHc------cCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchh
Confidence               235688999999753      234567899999999999999999999975322 1111 111111100 0000 0 


Q ss_pred             -----cch-hhc-cC--hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 -----FDF-ELI-MD--KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 -----~d~-~~~-~~--~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                           ... ... .+  ........++.+++.+||+.||++|||+.|+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~  279 (299)
T d1ua2a_         230 SLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK  279 (299)
T ss_dssp             SSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             ccchhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhC
Confidence                 000 000 00  000111245778888999999999999999864

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-44  Score=365.78  Aligned_cols=239  Identities=18%  Similarity=0.266  Sum_probs=189.9

Q ss_pred             hhccccccCcceEEEEEeC-CCcEEEEEEecccc-chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          337 SAELLGKGCVGATYKVVLD-GGDVVVVKRIRERK-KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~-~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ..+.||+|+||+||+|+.. +++.||||.++... ....+.+|+++++.++|||||++++++.+.+..|+|||||++|+|
T Consensus         9 i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~~~gg~L   88 (321)
T d1tkia_           9 IAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDI   88 (321)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBH
T ss_pred             EEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEecCCCCcH
Confidence            3578999999999999964 68899999998663 345678999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCC--CCeEEccCCcccccCCC----
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQL--GNACISDIGVHQLFHTP----  488 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~--~~~kl~DfGl~~~~~~~----  488 (640)
                      .+++....    .++++.+...++.||+.||+|||+   .+|+||||||+|||++.+  ..+||+|||+++.....    
T Consensus        89 ~~~i~~~~----~~l~e~~~~~i~~qi~~al~yLH~---~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~~~  161 (321)
T d1tkia_          89 FERINTSA----FELNEREIVSYVHQVCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFR  161 (321)
T ss_dssp             HHHHTSSS----CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEE
T ss_pred             HHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHH---cCCCcccccccceeecCCCceEEEEcccchhhccccCCccc
Confidence            99997543    258999999999999999999995   459999999999999854  58999999999876532    


Q ss_pred             -ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccC
Q 006559          489 -FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMD  567 (640)
Q Consensus       489 -~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  567 (640)
                       ..+++.|+|||+.       ....++.++||||+||++|||+||+.||......  .........         ....+
T Consensus       162 ~~~~t~~y~ape~~-------~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~--~~~~~i~~~---------~~~~~  223 (321)
T d1tkia_         162 LLFTAPEYYAPEVH-------QHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQ--QIIENIMNA---------EYTFD  223 (321)
T ss_dssp             EEESCGGGSCHHHH-------TTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHHT---------CCCCC
T ss_pred             ccccccccccchhc-------cCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhC---------CCCCC
Confidence             2458899999964       3455778999999999999999999999754322  111111111         00011


Q ss_pred             hH-HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          568 KE-MEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       568 ~~-~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .. ......++.+++.+|+..||++|||+.|+++
T Consensus       224 ~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~  257 (321)
T d1tkia_         224 EEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             HHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             hhhccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            10 0112234667888899999999999999976

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-43  Score=365.72  Aligned_cols=240  Identities=16%  Similarity=0.219  Sum_probs=183.3

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccccchHHHHHHHHHHhc-cCCCcccceeEEEEc----CCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVIGG-LRHSNIVSIRAYCNG----KDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~~~~~e~~~l~~-l~H~niv~l~~~~~~----~~~~~lV~Ey~~~  411 (640)
                      .++||+|+||+||+|+. .+++.||||+++..   ..+.+|+.++.+ .+|||||+++++|.+    ...+|+|||||++
T Consensus        17 ~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~---~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~ivmEy~~g   93 (335)
T d2ozaa1          17 SQVLGLGINGKVLQIFNKRTQEKFALKMLQDC---PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDG   93 (335)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEECS---HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCS
T ss_pred             eEEeeeccCeEEEEEEECCCCCEEEEEEECCc---HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEEEEECCCC
Confidence            35799999999999995 56899999998643   456678877654 589999999999865    4578999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC---CCCeEEccCCcccccCC-
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ---LGNACISDIGVHQLFHT-  487 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~---~~~~kl~DfGl~~~~~~-  487 (640)
                      |+|.+++....   ...+++.....++.|++.||+|||+   .+|+||||||+|||+++   ++.+||+|||+++.... 
T Consensus        94 g~L~~~i~~~~---~~~l~e~~~~~i~~qi~~al~ylH~---~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~  167 (335)
T d2ozaa1          94 GELFSRIQDRG---DQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSH  167 (335)
T ss_dssp             EEHHHHHHSCS---CCCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCC
T ss_pred             CcHHHHHHhcC---CCCcCHHHHHHHHHHHHHHHHHHHH---cCCccccccccccccccccccccccccccceeeeccCC
Confidence            99999997542   2358999999999999999999995   45999999999999985   56799999999987543 


Q ss_pred             ----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHhhcccccccccch
Q 006559          488 ----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQDESAWEVFDF  562 (640)
Q Consensus       488 ----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~  562 (640)
                          ...+|+.|+|||++       ....++.++|||||||++|||+||+.||.+.... ....+......      .+.
T Consensus       168 ~~~~~~~gt~~y~aPE~~-------~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~~~i~~------~~~  234 (335)
T d2ozaa1         168 NSLTTPCYTPYYVAPEVL-------GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRM------GQY  234 (335)
T ss_dssp             CCCCCCSCCCSSCCCCCC-------CGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------CCCS------CSS
T ss_pred             CccccccCCcccCCcHHH-------cCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHHHHHhc------CCC
Confidence                34579999999964       3456788999999999999999999999743221 11111110000      000


Q ss_pred             hhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          563 ELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       563 ~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ... .+.......++.+++.+||+.||++|||+.|+++
T Consensus       235 ~~~-~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  271 (335)
T d2ozaa1         235 EFP-NPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN  271 (335)
T ss_dssp             SCC-TTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             CCC-CcccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            010 1112233445777888999999999999999976

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-43  Score=367.72  Aligned_cols=234  Identities=16%  Similarity=0.241  Sum_probs=189.9

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc-----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER-----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPH  411 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~  411 (640)
                      .+.||+|+||.||+|+. .+|+.||||++...     ...+.+.+|+++++.++|||||++++++......++||||+++
T Consensus        46 ~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~e~~~~  125 (350)
T d1rdqe_          46 IKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAG  125 (350)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred             EEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccccccccccccccc
Confidence            46899999999999996 46899999998643     2335678899999999999999999999999999999999999


Q ss_pred             CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---C
Q 006559          412 GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---P  488 (640)
Q Consensus       412 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---~  488 (640)
                      |+|.+++....     .+++.....++.||+.||+|||+.   +||||||||+|||++.++.+||+|||+++....   .
T Consensus       126 g~l~~~l~~~~-----~l~e~~~~~i~~qi~~aL~yLH~~---~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~~~  197 (350)
T d1rdqe_         126 GEMFSHLRRIG-----RFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWT  197 (350)
T ss_dssp             CBHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCC
T ss_pred             cchhhhHhhcC-----CCCHHHHHHHHHHHHHHHHHHHhC---CEecCcCCHHHcccCCCCCEEeeeceeeeeccccccc
Confidence            99999987653     588999999999999999999954   599999999999999999999999999988754   3


Q ss_pred             ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhhccCh
Q 006559          489 FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFELIMDK  568 (640)
Q Consensus       489 ~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  568 (640)
                      ..+|+.|+|||++.       ...++.++|||||||++|||+||+.||.+...  ...........         ...+.
T Consensus       198 ~~Gt~~Y~APE~~~-------~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~--~~~~~~i~~~~---------~~~p~  259 (350)
T d1rdqe_         198 LCGTPEALAPEIIL-------SKGYNKAVDWWALGVLIYEMAAGYPPFFADQP--IQIYEKIVSGK---------VRFPS  259 (350)
T ss_dssp             CEECGGGCCHHHHT-------TCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCC---------CCCCT
T ss_pred             ccCccccCCHHHHc-------CCCCCccccccchhHHHHHHHhCCCCCCCcCH--HHHHHHHhcCC---------CCCCc
Confidence            45789999999753       45577899999999999999999999975432  22222211110         11111


Q ss_pred             HHHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 006559          569 EMEEEMRALLQVALLCLAPLPKDRP-----NMSIVHR  600 (640)
Q Consensus       569 ~~~~~~~~l~~l~~~Cl~~~P~~RP-----s~~~v~~  600 (640)
                      ..+   .++.+++..||+.||++|+     |+.++++
T Consensus       260 ~~s---~~~~~li~~~L~~dP~kR~~~~r~t~~ell~  293 (350)
T d1rdqe_         260 HFS---SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             TCC---HHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             cCC---HHHHHHHHHHhhhCHHhccccccccHHHHHc
Confidence            222   2456677789999999994     8888864

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-43  Score=363.24  Aligned_cols=233  Identities=22%  Similarity=0.338  Sum_probs=184.1

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccc-----cchHHHHHHHHHHh-ccCCCcccceeEEEEcCCeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRER-----KKKREVDEWLRVIG-GLRHSNIVSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~-----~~~~~~~~e~~~l~-~l~H~niv~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      .+.||+|+||+||+|+.. +++.||||+++..     ...+.+..|..++. .++|||||++++++.+++..|+|||||+
T Consensus         7 ~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yivmEy~~   86 (320)
T d1xjda_           7 HKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLN   86 (320)
T ss_dssp             EEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred             eeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEEEeecC
Confidence            578999999999999964 6889999999743     22334555665554 6899999999999999999999999999


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC---
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT---  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~---  487 (640)
                      +|+|.+++....     .++......++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+++....   
T Consensus        87 ~g~L~~~i~~~~-----~~~e~~~~~~~~qi~~al~ylH~~---~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~  158 (320)
T d1xjda_          87 GGDLMYHIQSCH-----KFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDA  158 (320)
T ss_dssp             TCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC
T ss_pred             CCcHHHHhhccC-----CCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCcccceeecCCCceeccccchhhhcccccc
Confidence            999999997653     478889999999999999999954   599999999999999999999999999986532   


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccccchhh
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEVFDFEL  564 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  564 (640)
                         ...+|..|+|||++       ....++.++|||||||++|||+||+.||.+......  .+......         .
T Consensus       159 ~~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~~--~~~i~~~~---------~  220 (320)
T d1xjda_         159 KTNTFCGTPDYIAPEIL-------LGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEEL--FHSIRMDN---------P  220 (320)
T ss_dssp             CBCCCCSCGGGCCHHHH-------TTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHHHCC---------C
T ss_pred             cccccCCCCCcCCHHHH-------cCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHHH--HHHHHcCC---------C
Confidence               24568899999975       345678899999999999999999999975432221  11111110         0


Q ss_pred             ccChHHHHHHHHHHHHHHHccCCCCCCCCCHH-HHH
Q 006559          565 IMDKEMEEEMRALLQVALLCLAPLPKDRPNMS-IVH  599 (640)
Q Consensus       565 ~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~-~v~  599 (640)
                      ..+...+   .++.+++.+||+.||++||++. ++.
T Consensus       221 ~~p~~~s---~~~~dli~~~L~~dP~~R~s~~~~l~  253 (320)
T d1xjda_         221 FYPRWLE---KEAKDLLVKLFVREPEKRLGVRGDIR  253 (320)
T ss_dssp             CCCTTSC---HHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             CCCccCC---HHHHHHHHHhcccCCCCCcCHHHHHH
Confidence            1111222   2466778889999999999985 664

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-43  Score=355.28  Aligned_cols=250  Identities=21%  Similarity=0.324  Sum_probs=185.0

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||+||+|+. .+|+.||||+++...    ..+.+.+|++++++++|||||++++++.+.+..|+||||+.++
T Consensus         7 ~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e~~~~~   86 (298)
T d1gz8a_           7 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQD   86 (298)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSEE
T ss_pred             ccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEeecCCc
Confidence            46899999999999996 568999999996542    3467889999999999999999999999999999999999765


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC-----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT-----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~-----  487 (640)
                       +.+++....   ...+++..+..++.|++.||+|||+.   +||||||||+|||++.++.+||+|||+++....     
T Consensus        87 -~~~~~~~~~---~~~l~e~~~~~~~~qil~~L~yLH~~---~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~~~  159 (298)
T d1gz8a_          87 -LKKFMDASA---LTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTY  159 (298)
T ss_dssp             -HHHHHHHTT---TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSBCT
T ss_pred             -hhhhhhhhc---ccCCCHHHHHHHHHHHHHHHHHhhcC---CEEccccCchheeecccCcceeccCCcceeccCCcccc
Confidence             444443222   12589999999999999999999954   599999999999999999999999999977643     


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchH--HHHHHhhc-cccccccc---
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIV--KWVQMMGQ-DESAWEVF---  560 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~--~~~~~~~~-~~~~~~~~---  560 (640)
                       ...+|..|+|||+....      ..++.++||||+||++|||++|+.||........  ...+.... .+..+...   
T Consensus       160 ~~~~gt~~y~apE~~~~~------~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  233 (298)
T d1gz8a_         160 THEVVTLWYRAPEILLGC------KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSM  233 (298)
T ss_dssp             TCCBCCCTTCCHHHHTTC------SSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGS
T ss_pred             eeecccceeeehhhhccc------cCCCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhccccccc
Confidence             23568899999975332      3356899999999999999999999975432111  11111111 11111000   


Q ss_pred             -ch--h--hccChH----HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          561 -DF--E--LIMDKE----MEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       561 -d~--~--~~~~~~----~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       +.  .  ......    ......++.+++.+|+..||++|||+.|+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~  282 (298)
T d1gz8a_         234 PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA  282 (298)
T ss_dssp             TTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cccccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence             00  0  000000    0111245677888899999999999999875

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.2e-42  Score=352.29  Aligned_cols=249  Identities=19%  Similarity=0.308  Sum_probs=188.4

Q ss_pred             hccccccCcceEEEEEeCCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCCC
Q 006559          338 AELLGKGCVGATYKVVLDGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHGS  413 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~gs  413 (640)
                      .++||+|+||+||+|+.++|+.||||+++..    ...+.+.+|+.++++++|||||++++++...+..++||||+.++.
T Consensus         7 ~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~~~~~~   86 (286)
T d1ob3a_           7 LEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDL   86 (286)
T ss_dssp             EEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCSEEH
T ss_pred             ccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEeehhhh
Confidence            4679999999999999999999999999754    224678899999999999999999999999999999999998877


Q ss_pred             HHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC------
Q 006559          414 LHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT------  487 (640)
Q Consensus       414 L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~------  487 (640)
                      +..+.....     .++...+..++.||+.||+|||+   .+||||||||+|||++.++.+|++|||++.....      
T Consensus        87 ~~~~~~~~~-----~l~~~~~~~i~~qi~~~L~~LH~---~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~  158 (286)
T d1ob3a_          87 KKLLDVCEG-----GLESVTAKSFLLQLLNGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYT  158 (286)
T ss_dssp             HHHHHTSTT-----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC------
T ss_pred             HHHHHhhcC-----CcchhhhHHHHHHHHHHHHHhcc---CcEEecCCCCceeeEcCCCCEEecccccceecccCccccc
Confidence            777765443     58999999999999999999995   4599999999999999999999999999877543      


Q ss_pred             CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcch--HHHHHHhhccc-ccccc-----
Q 006559          488 PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGI--VKWVQMMGQDE-SAWEV-----  559 (640)
Q Consensus       488 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~--~~~~~~~~~~~-~~~~~-----  559 (640)
                      ...++..|+|||++.      ....++.++||||+||++|||++|+.||.+.....  ....+...... ..+..     
T Consensus       159 ~~~~~~~y~~pE~~~------~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  232 (286)
T d1ob3a_         159 HEIVTLWYRAPDVLM------GSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELP  232 (286)
T ss_dssp             ---CCCTTCCHHHHT------TCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGST
T ss_pred             eecccchhhhHHHHh------CCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccchhhhh
Confidence            234578899999753      23456789999999999999999999997532211  11111111100 00000     


Q ss_pred             -cchhhc------cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 -FDFELI------MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 -~d~~~~------~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       .+....      ..........++.+++.+||+.||++|||++|+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~  280 (286)
T d1ob3a_         233 KYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (286)
T ss_dssp             TCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             hcccccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence             000000      00001111235677888899999999999999863

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-43  Score=352.96  Aligned_cols=230  Identities=17%  Similarity=0.327  Sum_probs=181.1

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEecccc--------chHHHHHHHHHHhccC--CCcccceeEEEEcCCeEEEE
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERK--------KKREVDEWLRVIGGLR--HSNIVSIRAYCNGKDELFLV  405 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~--------~~~~~~~e~~~l~~l~--H~niv~l~~~~~~~~~~~lV  405 (640)
                      ..++||+|+||+||+|+. .+|+.||||++....        ....+.+|+.++++++  |||||++++++.+.+..|+|
T Consensus         8 i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~~~lv   87 (273)
T d1xwsa_           8 VGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLI   87 (273)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEEE
T ss_pred             EeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCeEEEE
Confidence            357899999999999996 568999999986431        1133567899999886  89999999999999999999


Q ss_pred             EeccCC-CCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC-CCCeEEccCCccc
Q 006559          406 YDYLPH-GSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ-LGNACISDIGVHQ  483 (640)
Q Consensus       406 ~Ey~~~-gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~-~~~~kl~DfGl~~  483 (640)
                      |||+.+ +++.+++....     .+++..+..++.|++.||+|||+   .+|+||||||+|||++. ++.+||+|||+++
T Consensus        88 ~e~~~~~~~l~~~~~~~~-----~l~e~~~~~~~~qi~~al~~lH~---~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~  159 (273)
T d1xwsa_          88 LERPEPVQDLFDFITERG-----ALQEELARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGA  159 (273)
T ss_dssp             EECCSSEEEHHHHHHHHC-----SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             EEeccCcchHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHH---CCCccccCcccceEEecCCCeEEECccccce
Confidence            999976 68888886543     58999999999999999999995   45999999999999985 4799999999998


Q ss_pred             ccCC----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhhcccccccc
Q 006559          484 LFHT----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMGQDESAWEV  559 (640)
Q Consensus       484 ~~~~----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  559 (640)
                      ....    ...+|..|+|||++...      ..++.++||||+||++|||+||+.||....    ...+    .      
T Consensus       160 ~~~~~~~~~~~GT~~y~aPE~~~~~------~~~~~~~DiwSlGvilyell~g~~Pf~~~~----~i~~----~------  219 (273)
T d1xwsa_         160 LLKDTVYTDFDGTRVYSPPEWIRYH------RYHGRSAAVWSLGILLYDMVCGDIPFEHDE----EIIR----G------  219 (273)
T ss_dssp             ECCSSCBCCCCSCGGGSCHHHHHHS------CBCHHHHHHHHHHHHHHHHHHSSCSCCSHH----HHHH----C------
T ss_pred             ecccccccccccCCCcCCHHHHcCC------CCCCcccccccceeeehhHhhCCCCCCCch----HHhh----c------
Confidence            7643    34578999999975322      223567899999999999999999996421    0000    0      


Q ss_pred             cchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          560 FDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       560 ~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                         ........++   ++.+++.+||+.||++|||+.|+++
T Consensus       220 ---~~~~~~~~s~---~~~~li~~~L~~dp~~R~s~~eil~  254 (273)
T d1xwsa_         220 ---QVFFRQRVSS---ECQHLIRWCLALRPSDRPTFEEIQN  254 (273)
T ss_dssp             ---CCCCSSCCCH---HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ---ccCCCCCCCH---HHHHHHHHHccCCHhHCcCHHHHhc
Confidence               0001111222   4566778899999999999999865

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-41  Score=346.48  Aligned_cols=249  Identities=22%  Similarity=0.316  Sum_probs=178.7

Q ss_pred             hccccccCcceEEEEEe-CC-CcEEEEEEecccc----chHHHHHHHHHHhcc---CCCcccceeEEEEc-----CCeEE
Q 006559          338 AELLGKGCVGATYKVVL-DG-GDVVVVKRIRERK----KKREVDEWLRVIGGL---RHSNIVSIRAYCNG-----KDELF  403 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~-~~~vavK~l~~~~----~~~~~~~e~~~l~~l---~H~niv~l~~~~~~-----~~~~~  403 (640)
                      .+.||+|+||+||+|+. .+ ++.||||+++...    ....+.+|+.+++.+   +|||||+++++|..     ....+
T Consensus        12 ~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~~~~~~   91 (305)
T d1blxa_          12 VAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLT   91 (305)
T ss_dssp             EEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEE
T ss_pred             EEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccccCceEE
Confidence            56799999999999996 33 5679999986531    223455666665554   89999999999853     34789


Q ss_pred             EEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccc
Q 006559          404 LVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQ  483 (640)
Q Consensus       404 lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~  483 (640)
                      ++|||+++|++........    ..+++.....++.|++.||+|||+   .+||||||||+|||++.++.+||+|||+++
T Consensus        92 ~~~e~~~~~~~~~~~~~~~----~~~~~~~~~~~~~qi~~aL~yLH~---~~ivHrDiKp~NILi~~~~~~kl~dfg~~~  164 (305)
T d1blxa_          92 LVFEHVDQDLTTYLDKVPE----PGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLAR  164 (305)
T ss_dssp             EEEECCSCBHHHHHHHSCT----TCSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECSCCSCC
T ss_pred             EEEEeccCCchhhhhhccC----CCCCHHHHHHHHHHHHHHHHHHHh---CCEEecCCCccEEEEcCCCCeeecchhhhh
Confidence            9999999887765544332    257889999999999999999995   459999999999999999999999999987


Q ss_pred             ccC-----CCccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-h-HHHHHHhhcccc-
Q 006559          484 LFH-----TPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-I-VKWVQMMGQDES-  555 (640)
Q Consensus       484 ~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~-~~~~~~~~~~~~-  555 (640)
                      ...     ....+|..|+|||++.       ...++.++||||+||++|||+||+.||...... . ....+....... 
T Consensus       165 ~~~~~~~~~~~~gT~~Y~APE~~~-------~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~  237 (305)
T d1blxa_         165 IYSFQMALTSVVVTLWYRAPEVLL-------QSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEE  237 (305)
T ss_dssp             CCCGGGGGCCCCCCCTTCCHHHHT-------TCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGG
T ss_pred             hhcccccCCCcccChhhcCcchhc-------CCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchh
Confidence            653     2346799999999753       456788999999999999999999999754321 1 111111111100 


Q ss_pred             ccc--------ccchhh--ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          556 AWE--------VFDFEL--IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       556 ~~~--------~~d~~~--~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      .+.        ......  ............+.+++.+||+.||++|||+.|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~  292 (305)
T d1blxa_         238 DWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  292 (305)
T ss_dssp             GSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             cccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence            000        000000  000000111234566788899999999999999865

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3e-41  Score=344.11  Aligned_cols=248  Identities=15%  Similarity=0.171  Sum_probs=185.7

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccccchHHHHHHHHHHhccCCCcccce-eEEEEcCCeEEEEEeccCCCCH
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSI-RAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l-~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      ..+.||+|+||+||+|+. .+|+.||||.+.......++..|+++++.++|+|+|.. .+++...+..++||||+. |++
T Consensus        11 l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~~-~~l   89 (299)
T d1ckia_          11 LGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLG-PSL   89 (299)
T ss_dssp             EEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTTSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECCC-CBH
T ss_pred             EeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhccCHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEcC-Cch
Confidence            357899999999999996 56889999998876556678889999999988776655 455567788999999995 566


Q ss_pred             HHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEEC---CCCCeEEccCCcccccCC----
Q 006559          415 HSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVD---QLGNACISDIGVHQLFHT----  487 (640)
Q Consensus       415 ~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~---~~~~~kl~DfGl~~~~~~----  487 (640)
                      .+.+....    ..+++..+..++.|++.||+|||+   .+||||||||+|||++   .+..+||+|||+++.+..    
T Consensus        90 ~~~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~---~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~  162 (299)
T d1ckia_          90 EDLFNFCS----RKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTH  162 (299)
T ss_dssp             HHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTC
T ss_pred             hhhhhhcc----CCCcHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHhhccccccCCCceeeeeccCcceeccccccc
Confidence            66655432    258999999999999999999995   4599999999999986   456799999999987532    


Q ss_pred             ---------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHH-HHHHhhcccccc
Q 006559          488 ---------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVK-WVQMMGQDESAW  557 (640)
Q Consensus       488 ---------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~-~~~~~~~~~~~~  557 (640)
                               ...+|..|+|||+.       ....++.++|||||||++|||+||+.||......... .......     
T Consensus       163 ~~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~-----  230 (299)
T d1ckia_         163 QHIPYRENKNLTGTARYASINTH-------LGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISE-----  230 (299)
T ss_dssp             CBCCCCBCCSCCCCSSSCCHHHH-------TTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHH-----
T ss_pred             cceeccccCCcCCCccccCHHHH-------hCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhc-----
Confidence                     23468899999964       3456788999999999999999999999753222111 1111000     


Q ss_pred             cccchhhccC--hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 006559          558 EVFDFELIMD--KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTK  608 (640)
Q Consensus       558 ~~~d~~~~~~--~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~  608 (640)
                          .....+  ........++.+++..||+.+|++||++.++.+.|+++..+
T Consensus       231 ----~~~~~~~~~~~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~~~~  279 (299)
T d1ckia_         231 ----KKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR  279 (299)
T ss_dssp             ----HHHHSCHHHHTTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHH
T ss_pred             ----ccCCCChhHhccCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHHH
Confidence                000000  00112234567788889999999999999999999987543

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-41  Score=353.20  Aligned_cols=258  Identities=21%  Similarity=0.314  Sum_probs=184.0

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEeccccchHHHHHHHHHHhccCCCcccceeEEEEcC------CeEEEEEeccC
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNIVSIRAYCNGK------DELFLVYDYLP  410 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------~~~~lV~Ey~~  410 (640)
                      .++||+|+||+||+|+.. +|+.||||++....  ....+|++++++++|||||+++++|...      ...|||||||+
T Consensus        25 ~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~--~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey~~  102 (350)
T d1q5ka_          25 TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK--RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVP  102 (350)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECCS--SSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEECCS
T ss_pred             eeEEeeCcCeEEEEEEECCCCCEEEEEEECccc--hHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEEeccC
Confidence            467999999999999964 68999999997542  2234689999999999999999998543      34799999998


Q ss_pred             CCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC-CeEEccCCcccccCC--
Q 006559          411 HGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG-NACISDIGVHQLFHT--  487 (640)
Q Consensus       411 ~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~-~~kl~DfGl~~~~~~--  487 (640)
                      +|.+..+.+...  ....+++..+..++.||+.||+|||+   .+|+||||||+|||++.++ .+||+|||+++....  
T Consensus       103 ~~~~~~l~~~~~--~~~~l~~~~~~~i~~qil~aL~yLH~---~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~  177 (350)
T d1q5ka_         103 ETVYRVARHYSR--AKQTLPVIYVKLYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE  177 (350)
T ss_dssp             EEHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTTCCEEECCCTTCEECCTTS
T ss_pred             CccHHHHHhhhh--ccCCCCHHHHHHHHHHHHHHHHHHHh---cCCcccCCCcceEEEecCCCceeEecccchhhccCCc
Confidence            764444332111  12258999999999999999999994   5699999999999999775 899999999987642  


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc--hHHHHHHhhcccc-cc----
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG--IVKWVQMMGQDES-AW----  557 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~--~~~~~~~~~~~~~-~~----  557 (640)
                         ...++..|+|||++.      ....++.++||||+||++|||++|+.||......  +....+..+.... .+    
T Consensus       178 ~~~~~~gt~~y~aPE~~~------~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~  251 (350)
T d1q5ka_         178 PNVSYICSRYYRAPELIF------GATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMN  251 (350)
T ss_dssp             CCCSCCSCTTSCCHHHHT------TCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHC
T ss_pred             ccccccccccccChHHhh------cccCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhc
Confidence               345688999999753      2345788999999999999999999999754321  1111111111000 00    


Q ss_pred             -cccc---hhhccC----hHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhhcc
Q 006559          558 -EVFD---FELIMD----KEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR--MIEDIRTK  608 (640)
Q Consensus       558 -~~~d---~~~~~~----~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~--~L~~i~~~  608 (640)
                       ...+   +.....    ........++.+++.+||+.||++|||+.|+++  .+++++..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~~  312 (350)
T d1q5ka_         252 PNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDP  312 (350)
T ss_dssp             C---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGGCT
T ss_pred             cchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccccCC
Confidence             0000   000000    000112234677788899999999999999985  46666543

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-40  Score=346.89  Aligned_cols=248  Identities=17%  Similarity=0.210  Sum_probs=180.8

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc---chHHHHHHHHHHhccCCCcccceeEEEEcCC----eEEEEEecc
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK---KKREVDEWLRVIGGLRHSNIVSIRAYCNGKD----ELFLVYDYL  409 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~----~~~lV~Ey~  409 (640)
                      .+.||+|+||+||+|+. .+|+.||||++....   ..+.+.+|+++|++++||||+++++++....    ..++++||+
T Consensus        13 ~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~l~~~~   92 (345)
T d1pmea_          13 LSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYLVTHL   92 (345)
T ss_dssp             EEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEEC
T ss_pred             EEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEEEEEee
Confidence            46899999999999985 578999999997542   2356788999999999999999999997643    234455667


Q ss_pred             CCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC--
Q 006559          410 PHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT--  487 (640)
Q Consensus       410 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~--  487 (640)
                      .+|+|.+++...      .+++..+..++.|++.||+|||+   .+||||||||+|||++.++.+||+|||+++....  
T Consensus        93 ~~g~L~~~l~~~------~l~~~~i~~i~~qil~al~yLH~---~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~  163 (345)
T d1pmea_          93 MGADLYKLLKTQ------HLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDH  163 (345)
T ss_dssp             CCEEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGG
T ss_pred             cCCchhhhhhcC------CCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCcceEEECCCCCEEEcccCceeeccCCC
Confidence            799999999753      48899999999999999999995   4599999999999999999999999999876532  


Q ss_pred             -------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhh-cccccc--
Q 006559          488 -------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMG-QDESAW--  557 (640)
Q Consensus       488 -------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~-~~~~~~--  557 (640)
                             ...++..|+|||++.      ....++.++||||+||++|||+||+.||.........+..... ......  
T Consensus       164 ~~~~~~~~~~gt~~y~aPE~l~------~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  237 (345)
T d1pmea_         164 DHTGFLTEYVATRWYRAPEIML------NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDL  237 (345)
T ss_dssp             CBCCTTCCCCSCGGGCCGGGTT------TBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHH
T ss_pred             ccceeeccccccceechHHHhh------cCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhh
Confidence                   234688999999753      2345678999999999999999999999754322221111100 000000  


Q ss_pred             -cccch-------hh--ccChH----HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          558 -EVFDF-------EL--IMDKE----MEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       558 -~~~d~-------~~--~~~~~----~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                       .....       ..  .....    ......++.+++..|++.||++|||+.|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~  294 (345)
T d1pmea_         238 NCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA  294 (345)
T ss_dssp             HTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             hhhhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence             00000       00  00000    0011135778889999999999999999976

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-40  Score=342.04  Aligned_cols=249  Identities=18%  Similarity=0.305  Sum_probs=181.8

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccc----cchHHHHHHHHHHhccCCCcccceeEEEEc--------CCeEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRER----KKKREVDEWLRVIGGLRHSNIVSIRAYCNG--------KDELFL  404 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~--------~~~~~l  404 (640)
                      .+.||+|+||+||+|+. .+|+.||||++...    ...+.+.+|++++++++||||+++++++..        .+..|+
T Consensus        15 ~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~~~~~i   94 (318)
T d3blha1          15 LAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYL   94 (318)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC----------CEEE
T ss_pred             EEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccccCceEEE
Confidence            56899999999999996 57899999998644    234668899999999999999999999865        346899


Q ss_pred             EEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          405 VYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       405 V~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      ||||++++.+..+.....     .++...+..++.|++.||+|||+   .+|+||||||+|||++.++.+||+|||+++.
T Consensus        95 v~e~~~~~~~~~~~~~~~-----~~~~~~~~~i~~qil~~l~~lH~---~~ivHrDlKp~NILl~~~~~~kl~dfg~~~~  166 (318)
T d3blha1          95 VFDFCEHDLAGLLSNVLV-----KFTLSEIKRVMQMLLNGLYYIHR---NKILHRDMKAANVLITRDGVLKLADFGLARA  166 (318)
T ss_dssp             EEECCCEEHHHHHTCTTC-----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEeccCCCccchhhhccc-----ccccHHHHHHHHHHHHHHHHhcc---CCEEecCcCchheeecCCCcEEeeecceeee
Confidence            999999887766554332     47788889999999999999995   4599999999999999999999999999976


Q ss_pred             cCC----------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcch-HHHH-HHhhc
Q 006559          485 FHT----------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGI-VKWV-QMMGQ  552 (640)
Q Consensus       485 ~~~----------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~-~~~~-~~~~~  552 (640)
                      ...          ...+|..|+|||++..      ...++.++||||+||++|||+||+.||.+..... ..-+ +....
T Consensus       167 ~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~------~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~~~  240 (318)
T d3blha1         167 FSLAKNSQPNRYTNRVVTLWYRPPELLLG------ERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGS  240 (318)
T ss_dssp             CCC-----CCCCCSCCSCGGGCCHHHHTT------CSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCC
T ss_pred             cccccccccccccceecCHHHhhHHHHcC------CCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhcCC
Confidence            532          2346899999997632      3457789999999999999999999997533211 1111 11111


Q ss_pred             c-cccc-cc--------cchhhccChHHHH------HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          553 D-ESAW-EV--------FDFELIMDKEMEE------EMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       553 ~-~~~~-~~--------~d~~~~~~~~~~~------~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      . .... ..        ............+      ....+++++.+||+.||++|||+.|+++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~  304 (318)
T d3blha1         241 ITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN  304 (318)
T ss_dssp             CCTTTSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             CChhhccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHc
Confidence            0 0000 00        0000000000111      1235677889999999999999999874

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-40  Score=345.40  Aligned_cols=253  Identities=19%  Similarity=0.286  Sum_probs=181.8

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCC------eEEEEE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKD------ELFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~------~~~lV~  406 (640)
                      .+.||+|+||+||+|+. .+|+.||||+++...    ..+.+.+|+++|++++|||||+++++|...+      ..|+||
T Consensus        23 i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~  102 (346)
T d1cm8a_          23 LQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVM  102 (346)
T ss_dssp             EEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEE
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccceEEEEE
Confidence            46799999999999995 568999999997542    2345778999999999999999999997654      579999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      ||+ +++|..+.+..      .+++..+..++.|++.||+|||+.   +||||||||+|||++.++.+|++|||+++...
T Consensus       103 e~~-~~~l~~~~~~~------~l~~~~~~~~~~qi~~aL~~LH~~---~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~  172 (346)
T d1cm8a_         103 PFM-GTDLGKLMKHE------KLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLARQAD  172 (346)
T ss_dssp             ECC-SEEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             ecc-cccHHHHHHhc------cccHHHHHHHHHHHHHHHHHHHhC---CCcccccCcchhhcccccccccccccceeccC
Confidence            999 56788777643      489999999999999999999954   59999999999999999999999999998876


Q ss_pred             C---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchH--HHHHHhhccc-cccccc
Q 006559          487 T---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIV--KWVQMMGQDE-SAWEVF  560 (640)
Q Consensus       487 ~---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~--~~~~~~~~~~-~~~~~~  560 (640)
                      .   ...+|..|+|||++.+      ...++.++||||+||++|||++|+.||........  .......... ......
T Consensus       173 ~~~~~~~~t~~y~aPE~~~~------~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (346)
T d1cm8a_         173 SEMTGYVVTRWYRAPEVILN------WMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRL  246 (346)
T ss_dssp             SSCCSSCSCGGGCCTHHHHT------TTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTC
T ss_pred             CccccccccccccCHHHHcC------CCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhh
Confidence            4   3456889999997632      23467899999999999999999999975432211  1111111000 000000


Q ss_pred             c-----------hhhcc---ChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH--HHHhh
Q 006559          561 D-----------FELIM---DKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRM--IEDIR  606 (640)
Q Consensus       561 d-----------~~~~~---~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~--L~~i~  606 (640)
                      .           +....   ..........+.+++.+||..||++|||+.|+++.  ++++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~~  308 (346)
T d1cm8a_         247 QSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLH  308 (346)
T ss_dssp             SCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC
T ss_pred             cchhhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhCcCC
Confidence            0           00000   00001112346678888999999999999999863  54443

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=1.2e-40  Score=338.03  Aligned_cols=250  Identities=13%  Similarity=0.140  Sum_probs=193.5

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEeccccchHHHHHHHHHHhccCC-CcccceeEEEEcCCeEEEEEeccCCCCHH
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVIGGLRH-SNIVSIRAYCNGKDELFLVYDYLPHGSLH  415 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H-~niv~l~~~~~~~~~~~lV~Ey~~~gsL~  415 (640)
                      .+.||+|+||+||+|+. .+|+.||||.+........+.+|+++++.++| +|++.+++++......++||||+ +|+|.
T Consensus        10 ~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~-~~~l~   88 (293)
T d1csna_          10 GRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPSLE   88 (293)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-CCBHH
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEEccccCcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEec-CCCHH
Confidence            56899999999999995 46889999998766555667788888888876 89999999999999999999999 68999


Q ss_pred             HhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECC-----CCCeEEccCCcccccCC---
Q 006559          416 SLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQ-----LGNACISDIGVHQLFHT---  487 (640)
Q Consensus       416 ~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~-----~~~~kl~DfGl~~~~~~---  487 (640)
                      +++.....    .+++.....++.|++.||+|||   ..+|+||||||+|||++.     ++.+||+|||+++.+..   
T Consensus        89 ~~~~~~~~----~~~~~~~~~i~~q~~~~l~~lH---~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~  161 (293)
T d1csna_          89 DLLDLCGR----KFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVT  161 (293)
T ss_dssp             HHHHHTTT----CCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTT
T ss_pred             HHHHhhcc----chhhHHHHHHHHHHHHHHHHHH---HCCceeccCCccceeecCcccccCCceEEcccceeEEcccCcc
Confidence            99875432    5889999999999999999999   456999999999999974     57899999999987532   


Q ss_pred             ----------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHhhccccc
Q 006559          488 ----------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQDESA  556 (640)
Q Consensus       488 ----------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~  556 (640)
                                ...+|+.|+|||++       ....++.++|||||||++|||+||+.||...... .....+........
T Consensus       162 ~~~~~~~~~~~~~GT~~y~aPE~~-------~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~  234 (293)
T d1csna_         162 KQHIPYREKKNLSGTARYMSINTH-------LGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQS  234 (293)
T ss_dssp             CCBCCCCCCCCCCSCTTTCCHHHH-------TTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHH
T ss_pred             ccceeecccCceEEchhhcCHHHh-------cCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCC
Confidence                      23468999999964       3456788999999999999999999999743322 22211111110000


Q ss_pred             ccccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 006559          557 WEVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHRMIEDIRTKG  609 (640)
Q Consensus       557 ~~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~~L~~i~~~~  609 (640)
                         .....    -....+.++.+++..|++.+|++||+++.+.+.|+++..+.
T Consensus       235 ---~~~~~----l~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~~l~~~~~~~  280 (293)
T d1csna_         235 ---TPLRE----LCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERL  280 (293)
T ss_dssp             ---SCHHH----HTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             ---CChHH----hcCCCCHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHHHc
Confidence               00000    00112235667777899999999999999999999976543

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-40  Score=337.64  Aligned_cols=248  Identities=17%  Similarity=0.263  Sum_probs=187.0

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcCCeEEEEEeccCCC
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lV~Ey~~~g  412 (640)
                      .+.||+|+||+||+|+. .+++.||||+++...    ..+.+.+|+.+++.++|||||++++++...+..++|+||+.++
T Consensus         7 i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~~~~~~   86 (292)
T d1unla_           7 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQD   86 (292)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCSEE
T ss_pred             eeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEeeecccc
Confidence            46799999999999995 578899999986542    2456789999999999999999999999999999999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHTP----  488 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~~----  488 (640)
                      +|..++...+     .+++..+..++.|++.||+|||+   .+||||||||+|||++.++.+||+|||.++.....    
T Consensus        87 ~l~~~~~~~~-----~~~~~~~~~~~~q~~~aL~~lH~---~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~~  158 (292)
T d1unla_          87 LKKYFDSCNG-----DLDPEIVKSFLFQLLKGLGFCHS---RNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCY  158 (292)
T ss_dssp             HHHHHHHTTT-----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSCC
T ss_pred             cccccccccc-----ccchhHHHHHHHHHHHHHHHhhc---CCEeeecccCcccccccCCceeeeecchhhcccCCCccc
Confidence            9988887543     57889999999999999999995   45999999999999999999999999999876432    


Q ss_pred             --ccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHhh---cc--ccccccc-
Q 006559          489 --FFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMMG---QD--ESAWEVF-  560 (640)
Q Consensus       489 --~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~~---~~--~~~~~~~-  560 (640)
                        ...+..|+|||++.      ....++.++||||+||++|||++|+.||..... .....+...   ..  +..+... 
T Consensus       159 ~~~~~~~~~~~pe~~~------~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  231 (292)
T d1unla_         159 SAEVVTLWYRPPDVLF------GAKLYSTSIDMWSAGCIFAELANAGRPLFPGND-VDDQLKRIFRLLGTPTEEQWPSMT  231 (292)
T ss_dssp             CSCCSCGGGCCHHHHT------TCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSS-HHHHHHHHHHHHCCCCTTTCTTGG
T ss_pred             eeeccccchhhhhHhc------cCCCCCchhhccccchHHHHHhhCCCCCCCCCC-HHHHHHHHHhhcCCCChhhhhhhh
Confidence              23467789999753      223467899999999999999999999754322 122111111   00  0000000 


Q ss_pred             -----------chhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          561 -----------DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       561 -----------d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                                 ................+.+++.+|++.||++|||++|+++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~  282 (292)
T d1unla_         232 KLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             GSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             hcccccccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                       0000000001111234667788899999999999999864

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=8.4e-40  Score=337.83  Aligned_cols=246  Identities=15%  Similarity=0.225  Sum_probs=184.0

Q ss_pred             hhccccccCcceEEEEEe-CCCcEEEEEEeccccchHHHHHHHHHHhccC-CCcccceeEEEEcC--CeEEEEEeccCCC
Q 006559          337 SAELLGKGCVGATYKVVL-DGGDVVVVKRIRERKKKREVDEWLRVIGGLR-HSNIVSIRAYCNGK--DELFLVYDYLPHG  412 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~--~~~~lV~Ey~~~g  412 (640)
                      ..++||+|+||+||+|+. .+|+.||||+++.. ..+.+.+|++++++++ ||||+++++++...  ...++|||||++|
T Consensus        39 i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~-~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e~~~~~  117 (328)
T d3bqca1          39 LVRKLGRGKYSEVFEAINITNNEKVVVKILKPV-KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNT  117 (328)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECSS-CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEECCCSC
T ss_pred             EEEEEecCcCeEEEEEEECCCCCEEEEEEECHH-HHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEeecCCC
Confidence            357899999999999996 56889999998754 3566888999999995 99999999999753  5699999999999


Q ss_pred             CHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC-CeEEccCCcccccCC----
Q 006559          413 SLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG-NACISDIGVHQLFHT----  487 (640)
Q Consensus       413 sL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~-~~kl~DfGl~~~~~~----  487 (640)
                      +|..+.+        .++...+..++.||+.||+|||+.   +||||||||+|||++.++ .+||+|||+++....    
T Consensus       118 ~L~~~~~--------~l~e~~i~~i~~qil~aL~~LH~~---gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~~  186 (328)
T d3bqca1         118 DFKQLYQ--------TLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEY  186 (328)
T ss_dssp             BGGGTTT--------SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCCC
T ss_pred             cHHHHhc--------CCCHHHHHHHHHHHHHHHHHHhhc---ccccccccccceEEcCCCCeeeecccccceeccCCCcc
Confidence            9987643        478899999999999999999954   599999999999998655 689999999987643    


Q ss_pred             -CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHHHHHh---------------h
Q 006559          488 -PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKWVQMM---------------G  551 (640)
Q Consensus       488 -~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~~~~~---------------~  551 (640)
                       ...+|..|+|||++.+      ...++.++||||+||++|||++|+.||.........+....               .
T Consensus       187 ~~~~~t~~y~aPE~~~~------~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~  260 (328)
T d3bqca1         187 NVRVASRYFKGPELLVD------YQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYN  260 (328)
T ss_dssp             CSCCSCGGGCCHHHHTT------CCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred             cccccCccccCcccccC------CCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcc
Confidence             2345889999997532      23467899999999999999999999975443322111110               0


Q ss_pred             cccc--ccccc-------chhhccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          552 QDES--AWEVF-------DFELIMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       552 ~~~~--~~~~~-------d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                      ....  .....       ...............++.+++.+|+..||++|||++|+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~  318 (328)
T d3bqca1         261 IELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  318 (328)
T ss_dssp             CCCCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cccCcccchhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            0000  00000       0000000011112235677888899999999999999865

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-40  Score=339.14  Aligned_cols=240  Identities=20%  Similarity=0.248  Sum_probs=183.6

Q ss_pred             hhccccccCcceEEEEEe----CCCcEEEEEEeccc------cchHHHHHHHHHHhccCC-CcccceeEEEEcCCeEEEE
Q 006559          337 SAELLGKGCVGATYKVVL----DGGDVVVVKRIRER------KKKREVDEWLRVIGGLRH-SNIVSIRAYCNGKDELFLV  405 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~----~~~~~vavK~l~~~------~~~~~~~~e~~~l~~l~H-~niv~l~~~~~~~~~~~lV  405 (640)
                      ..+.||+|+||+||+|+.    .+|+.||||.++..      ...+.+.+|++++++++| |||+++++++.+....++|
T Consensus        28 ~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~~~~v  107 (322)
T d1vzoa_          28 LLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLI  107 (322)
T ss_dssp             EEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEE
T ss_pred             EEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCceeee
Confidence            357899999999999985    24789999998643      234567789999999977 7999999999999999999


Q ss_pred             EeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCccccc
Q 006559          406 YDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLF  485 (640)
Q Consensus       406 ~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~  485 (640)
                      |||+.+|+|.+++....     .+.......++.|++.||+|||+.   +||||||||+|||++.++.+||+|||+++.+
T Consensus       108 ~e~~~~~~L~~~i~~~~-----~~~e~~~~~~~~Qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~  179 (322)
T d1vzoa_         108 LDYINGGELFTHLSQRE-----RFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKEF  179 (322)
T ss_dssp             ECCCCSCBHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEEEEC
T ss_pred             eecccccHHHHHHHhcc-----cccHHHHHHHHHHHHHHHHHhhcC---CEEeccCCccceeecCCCCEEEeeccchhhh
Confidence            99999999999997654     356778888999999999999954   5999999999999999999999999999875


Q ss_pred             CC-------CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc-hHHHHHHhhcccccc
Q 006559          486 HT-------PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG-IVKWVQMMGQDESAW  557 (640)
Q Consensus       486 ~~-------~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~~  557 (640)
                      ..       ...++..|++||.+...     ...++.++||||+||+||||+||+.||...... ....+.....     
T Consensus       180 ~~~~~~~~~~~~g~~~~~~pe~~~~~-----~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~~-----  249 (322)
T d1vzoa_         180 VADETERAYDFCGTIEYMAPDIVRGG-----DSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRIL-----  249 (322)
T ss_dssp             CGGGGGGGCGGGSCCTTCCHHHHTTC-----C---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHH-----
T ss_pred             cccccccccccccccccchhHHhhcC-----CcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcc-----
Confidence            32       23457889999976432     224578999999999999999999999753322 1111111000     


Q ss_pred             cccchhhccChHHHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHH
Q 006559          558 EVFDFELIMDKEMEEEMRALLQVALLCLAPLPKDRPN-----MSIVHR  600 (640)
Q Consensus       558 ~~~d~~~~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs-----~~~v~~  600 (640)
                         ......+..   ...++.+++.+||++||++|||     ++|+++
T Consensus       250 ---~~~~~~~~~---~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~  291 (322)
T d1vzoa_         250 ---KSEPPYPQE---MSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE  291 (322)
T ss_dssp             ---HCCCCCCTT---SCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred             ---cCCCCCccc---CCHHHHHHHHHHcccCHHHcCCCCcccHHHHHc
Confidence               001111111   2234666778899999999995     667653

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-39  Score=333.33  Aligned_cols=245  Identities=18%  Similarity=0.232  Sum_probs=176.3

Q ss_pred             hccccccCcceEEEEEeC-CCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEc------CCeEEEEE
Q 006559          338 AELLGKGCVGATYKVVLD-GGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNG------KDELFLVY  406 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~~-~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~------~~~~~lV~  406 (640)
                      .++||+|+||+||+|+.. +|+.||||++....    ..+.+.+|+.++++++|||||+++++|..      ....|+||
T Consensus        22 ~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~~~iv~  101 (355)
T d2b1pa1          22 LKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVM  101 (355)
T ss_dssp             EEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEE
T ss_pred             EEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCceeEEEE
Confidence            468999999999999964 68999999997542    23457789999999999999999999964      36899999


Q ss_pred             eccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccC
Q 006559          407 DYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFH  486 (640)
Q Consensus       407 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~  486 (640)
                      |||.++.+ +.+..       .+++..+..++.|++.||+|||+   .+|+||||||+|||++.++.+|++|||+++...
T Consensus       102 Ey~~~~l~-~~~~~-------~~~~~~i~~~~~qil~gl~~LH~---~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~  170 (355)
T d2b1pa1         102 ELMDANLC-QVIQM-------ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  170 (355)
T ss_dssp             ECCSEEHH-HHHTS-------CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCCCC-----
T ss_pred             eccchHHH-Hhhhc-------CCCHHHHHHHHHHHHHHHHHhhh---cccccccCCccccccccccceeeechhhhhccc
Confidence            99976554 44432       37889999999999999999995   459999999999999999999999999987654


Q ss_pred             C-----CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHH--HHHHhhc-------
Q 006559          487 T-----PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVK--WVQMMGQ-------  552 (640)
Q Consensus       487 ~-----~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~--~~~~~~~-------  552 (640)
                      .     ...+|..|+|||++.       ...+++++||||+||++|||++|+.||...+.....  .......       
T Consensus       171 ~~~~~~~~~~t~~y~aPE~l~-------~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~  243 (355)
T d2b1pa1         171 TSFMMTPYVVTRYYRAPEVIL-------GMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMK  243 (355)
T ss_dssp             ----------CCTTCCHHHHT-------TCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHT
T ss_pred             cccccccccccccccChhhhc-------CCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHH
Confidence            3     335688999999753       346778999999999999999999999754321110  0000000       


Q ss_pred             -----------cc-cc-----ccccchhh-c-cChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          553 -----------DE-SA-----WEVFDFEL-I-MDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       553 -----------~~-~~-----~~~~d~~~-~-~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                                 .. ..     ...+.... . ..........++.+++.+|+..||++|||++|+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~  310 (355)
T d2b1pa1         244 KLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ  310 (355)
T ss_dssp             TSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             HhhhhHHHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence                       00 00     00000000 0 01112334556788999999999999999999974

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-39  Score=336.97  Aligned_cols=248  Identities=17%  Similarity=0.216  Sum_probs=180.9

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc----chHHHHHHHHHHhccCCCcccceeEEEEcC-----CeEEEEEe
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK----KKREVDEWLRVIGGLRHSNIVSIRAYCNGK-----DELFLVYD  407 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~-----~~~~lV~E  407 (640)
                      .+.||+|+||+||+|+. .+|+.||||++....    ..+.+.+|++++++++|||||++++++...     ...++++|
T Consensus        23 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~~~~i~~  102 (348)
T d2gfsa1          23 LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVT  102 (348)
T ss_dssp             EEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCCCCEEEE
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCceEEEEE
Confidence            56799999999999995 578999999997542    234577899999999999999999998643     34567778


Q ss_pred             ccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEEccCCcccccCC
Q 006559          408 YLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACISDIGVHQLFHT  487 (640)
Q Consensus       408 y~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~~~~~  487 (640)
                      |+.+|+|.+++...      .+++..+..++.||+.||+|||+   .+|+||||||+|||++.++.+|++|||++.....
T Consensus       103 ~~~gg~L~~~~~~~------~l~e~~~~~i~~qil~aL~~LH~---~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~  173 (348)
T d2gfsa1         103 HLMGADLNNIVKCQ------KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDD  173 (348)
T ss_dssp             ECCSEEHHHHHTTC------CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCC----CCTG
T ss_pred             eecCCchhhhcccc------cccHHHHHHHHHHHHHHHHHHHh---CCCcccccCCccccccccccccccccchhcccCc
Confidence            88999999999643      48999999999999999999995   4599999999999999999999999999877643


Q ss_pred             ---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcchHHH--HHHhhcccc-cccccc
Q 006559          488 ---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELGIVKW--VQMMGQDES-AWEVFD  561 (640)
Q Consensus       488 ---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~~~~~--~~~~~~~~~-~~~~~d  561 (640)
                         ...++..|+|||+..      ....++.++||||+||++|||++|+.||..........  .+....... ......
T Consensus       174 ~~~~~~g~~~y~apE~~~------~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~  247 (348)
T d2gfsa1         174 EMTGYVATRWYRAPEIML------NWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKIS  247 (348)
T ss_dssp             GGSSSCHHHHTSCHHHHT------TCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCC
T ss_pred             ccccccccccccCchhhc------CCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhcc
Confidence               345578899999753      23345789999999999999999999997543221111  111110000 000000


Q ss_pred             --------hhhc--cChH----HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 006559          562 --------FELI--MDKE----MEEEMRALLQVALLCLAPLPKDRPNMSIVHR  600 (640)
Q Consensus       562 --------~~~~--~~~~----~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~~  600 (640)
                              ....  ....    ......++.+++.+|++.||++|||+.|+++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~  300 (348)
T d2gfsa1         248 SESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  300 (348)
T ss_dssp             CHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             chhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhc
Confidence                    0000  0000    0011234677888999999999999999976

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-34  Score=299.53  Aligned_cols=252  Identities=15%  Similarity=0.218  Sum_probs=176.5

Q ss_pred             hccccccCcceEEEEEe-CCCcEEEEEEecccc-chHHHHHHHHHHhccC-----------CCcccceeEEEEc--CCeE
Q 006559          338 AELLGKGCVGATYKVVL-DGGDVVVVKRIRERK-KKREVDEWLRVIGGLR-----------HSNIVSIRAYCNG--KDEL  402 (640)
Q Consensus       338 ~~~iG~G~fg~Vy~~~~-~~~~~vavK~l~~~~-~~~~~~~e~~~l~~l~-----------H~niv~l~~~~~~--~~~~  402 (640)
                      .++||+|+||+||+|+. .+|+.||||+++... ..+.+.+|+++++.++           |+||+++++++..  ....
T Consensus        18 ~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~   97 (362)
T d1q8ya_          18 VRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGV   97 (362)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEE
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccccce
Confidence            57899999999999996 578999999998653 3455677888777664           5789999998864  3567


Q ss_pred             EEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCC------CeEE
Q 006559          403 FLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLG------NACI  476 (640)
Q Consensus       403 ~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~------~~kl  476 (640)
                      +++|+++..+..........  ....+++..+..++.||+.||+|||+  ..+|+||||||+|||++.++      .+|+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~i~~qil~al~~lh~--~~~IvHrDlKp~NIll~~~~~~~~~~~~kl  173 (362)
T d1q8ya_          98 HVVMVFEVLGENLLALIKKY--EHRGIPLIYVKQISKQLLLGLDYMHR--RCGIIHTDIKPENVLMEIVDSPENLIQIKI  173 (362)
T ss_dssp             EEEEEECCCCEEHHHHHHHT--TTSCCCHHHHHHHHHHHHHHHHHHHH--TTCEECSCCSGGGEEEEEEETTTTEEEEEE
T ss_pred             eeeeeecccccccccccccc--cccCCcHHHHHHHHHHHHHHHHHHhh--hcCcccccCChhHeeeeccCcccccceeeE
Confidence            77777776654333222111  12357888999999999999999996  24699999999999998655      3899


Q ss_pred             ccCCcccccCC---CccccccccCCccccCCCCccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCcc--------hHH
Q 006559          477 SDIGVHQLFHT---PFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVVLLEILTGKMAKGDGELG--------IVK  545 (640)
Q Consensus       477 ~DfGl~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvvl~el~tg~~p~~~~~~~--------~~~  545 (640)
                      +|||.+.....   ...+|..|+|||++       ....++.++||||+||+++||++|+.||......        ...
T Consensus       174 ~dfg~s~~~~~~~~~~~gt~~y~aPE~~-------~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~  246 (362)
T d1q8ya_         174 ADLGNACWYDEHYTNSIQTREYRSPEVL-------LGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQ  246 (362)
T ss_dssp             CCCTTCEETTBCCCSCCSCGGGCCHHHH-------HTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHH
T ss_pred             eecccccccccccccccccccccChhhc-------cccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHH
Confidence            99999876543   34568899999965       3456788999999999999999999999743211        111


Q ss_pred             HHHHhhccccc------------------ccccchhh--------ccChHHHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 006559          546 WVQMMGQDESA------------------WEVFDFEL--------IMDKEMEEEMRALLQVALLCLAPLPKDRPNMSIVH  599 (640)
Q Consensus       546 ~~~~~~~~~~~------------------~~~~d~~~--------~~~~~~~~~~~~l~~l~~~Cl~~~P~~RPs~~~v~  599 (640)
                      .+...+.....                  ..+.....        ...........++.+++.+|++.||++|||++|++
T Consensus       247 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L  326 (362)
T d1q8ya_         247 IIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLV  326 (362)
T ss_dssp             HHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHH
T ss_pred             HHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHh
Confidence            12221110000                  00000000        00001234556788899999999999999999986


Q ss_pred             H
Q 006559          600 R  600 (640)
Q Consensus       600 ~  600 (640)
                      +
T Consensus       327 ~  327 (362)
T d1q8ya_         327 N  327 (362)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=7.2e-31  Score=268.61  Aligned_cols=207  Identities=35%  Similarity=0.570  Sum_probs=169.5

Q ss_pred             CChhhHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCceEecCCC--CcEEEEEeCCCCCCCC---chhccCCCCCCEE
Q 006559           22 SPYSDISTLLSFKASVTGSSDSLSSWVNSTDPCFDSWRGVTCNPST--HRVIKLVLEDLDLTGP---AEVLSRLTQLRLL   96 (640)
Q Consensus        22 ~~~~~~~~ll~~k~~~~~~~~~~~sW~~~~~~c~~~w~gv~C~~~~--~~v~~l~l~~~~l~g~---~~~l~~l~~L~~L   96 (640)
                      +.+.|++||++||+++.++. .+++|+.++|||.+.|.||+|+..+  .||+.|+|.+++++|.   ++.+++|++|++|
T Consensus         3 c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L   81 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL   81 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEE
T ss_pred             CCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcccccc
Confidence            45789999999999997664 4579988888886679999998754  4899999999999984   3789999999999


Q ss_pred             eCCC-CcCCCCCC-CCCCCCCCcEEEccccccccc------------------------CCccCCCCCCCCEEEcccCCC
Q 006559           97 SLKN-NLLSSSNL-NLSSWPHLKHLYLSHNRFTGT------------------------FPSGVSSLRHLRRVDLSHNAY  150 (640)
Q Consensus        97 ~Ls~-N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~------------------------~p~~~~~l~~L~~L~Ls~N~l  150 (640)
                      +|++ |.++|..| .++++++|++|+|++|+|.+.                        +|..+++++.|+.+++++|.+
T Consensus        82 ~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l  161 (313)
T d1ogqa_          82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI  161 (313)
T ss_dssp             EEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccc
Confidence            9986 88987654 788899888888888887654                        445566677777777777777


Q ss_pred             CCCCCch----------------------------------------------------------------------hcC
Q 006559          151 EGEIPMT----------------------------------------------------------------------ELT  160 (640)
Q Consensus       151 ~g~~p~~----------------------------------------------------------------------~~~  160 (640)
                      +|.+|..                                                                      .+.
T Consensus       162 ~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~  241 (313)
T d1ogqa_         162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG  241 (313)
T ss_dssp             EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6655521                                                                      234


Q ss_pred             CCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcc--cCCCCCCCCCCCcccCCCCCCCCC
Q 006559          161 RLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAW--MSPFGGSSFAGNKNLCGRPLPSDC  230 (640)
Q Consensus       161 ~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~--~~~~~~~~~~gn~~lcg~~~~~~c  230 (640)
                      .+++|+.|+|++|+|+|.+|..+..+++|+.|+|++|+|+|.||..  +..+....+.||+.+||.|+|. |
T Consensus       242 ~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp~-c  312 (313)
T d1ogqa_         242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA-C  312 (313)
T ss_dssp             CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSC-C
T ss_pred             cccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCCC-C
Confidence            5678899999999999999999999999999999999999999974  4566777889999999999885 6

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.86  E-value=5.3e-23  Score=193.76  Aligned_cols=165  Identities=16%  Similarity=0.141  Sum_probs=115.6

Q ss_pred             hhccccccCcceEEEEEeCCCcEEEEEEecccc--------------------chHHHHHHHHHHhccCCCcccceeEEE
Q 006559          337 SAELLGKGCVGATYKVVLDGGDVVVVKRIRERK--------------------KKREVDEWLRVIGGLRHSNIVSIRAYC  396 (640)
Q Consensus       337 ~~~~iG~G~fg~Vy~~~~~~~~~vavK~l~~~~--------------------~~~~~~~e~~~l~~l~H~niv~l~~~~  396 (640)
                      ..+.||+|+||+||+|+..+|+.||||.++...                    .......|...+.++.|++++..+++.
T Consensus         4 vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~   83 (191)
T d1zara2           4 IGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWE   83 (191)
T ss_dssp             EEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEE
T ss_pred             hCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEec
Confidence            357899999999999998889999999875320                    012234577788899999999887664


Q ss_pred             EcCCeEEEEEeccCCCCHHHhhccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCceecCCCCCCeEECCCCCeEE
Q 006559          397 NGKDELFLVYDYLPHGSLHSLLHGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYNKAHLFHGHLSSSNIVVDQLGNACI  476 (640)
Q Consensus       397 ~~~~~~~lV~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl~~~~~~kl  476 (640)
                      .    .++||||++++.+.++            +......++.|++++|+|||.   .+|+||||||+|||+++++ ++|
T Consensus        84 ~----~~lvme~~~~~~~~~l------------~~~~~~~i~~ql~~~l~~lH~---~giiHrDiKP~NILv~~~~-~~l  143 (191)
T d1zara2          84 G----NAVLMELIDAKELYRV------------RVENPDEVLDMILEEVAKFYH---RGIVHGDLSQYNVLVSEEG-IWI  143 (191)
T ss_dssp             T----TEEEEECCCCEEGGGC------------CCSCHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEETTE-EEE
T ss_pred             C----CEEEEEeeccccccch------------hhHHHHHHHHHHHHHHHHHhh---CCEEEccCChhheeeeCCC-EEE
Confidence            2    3799999988665432            222345789999999999995   4599999999999999655 899


Q ss_pred             ccCCcccccCCCccccccccCCccccCCCCccccCCCCCccchHHHHHH
Q 006559          477 SDIGVHQLFHTPFFINDAYNAPELKFNNNNNYSQRKFWQRCDVYSFGVV  525 (640)
Q Consensus       477 ~DfGl~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~k~DV~SfGvv  525 (640)
                      +|||++.....+...  .|....+-  ....+-.+.|..++||||..--
T Consensus       144 iDFG~a~~~~~~~~~--~~l~rd~~--~~~~~f~r~y~~~~d~~s~~~~  188 (191)
T d1zara2         144 IDFPQSVEVGEEGWR--EILERDVR--NIITYFSRTYRTEKDINSAIDR  188 (191)
T ss_dssp             CCCTTCEETTSTTHH--HHHHHHHH--HHHHHHHHHHCCCCCHHHHHHH
T ss_pred             EECCCcccCCCCCcH--HHHHHHHH--HHHHHHcCCCCCcccHHHHHHH
Confidence            999999776533211  11110000  0000112456678999997543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=5.8e-17  Score=151.97  Aligned_cols=137  Identities=23%  Similarity=0.278  Sum_probs=111.7

Q ss_pred             CCCCCCCceEecCCCCcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCC-C-CCCCCCCCcEEEcccccccccC
Q 006559           53 PCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSN-L-NLSSWPHLKHLYLSHNRFTGTF  130 (640)
Q Consensus        53 ~c~~~w~gv~C~~~~~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~-~-~~~~l~~L~~L~Ls~N~l~g~~  130 (640)
                      .|.|+|..|.|+.            ++|+-.+..+  -+++++|+|++|.|++.. . .|..+++|+.|+|++|.+.+..
T Consensus         5 ~C~C~~~~v~Cs~------------~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~   70 (192)
T d1w8aa_           5 MCHCEGTTVDCTG------------RGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE   70 (192)
T ss_dssp             TSEEETTEEECTT------------SCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC
T ss_pred             CCEEcCCEEEEeC------------CCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccc
Confidence            3555677777754            4455433333  267899999999998643 3 5788999999999999999988


Q ss_pred             CccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCC
Q 006559          131 PSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP  204 (640)
Q Consensus       131 p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip  204 (640)
                      +..|..+++|+.|+|++|+++. +|+..|.++++|++|+|++|+|++..+..+..+++|+.|+|++|.+.+..+
T Consensus        71 ~~~~~~~~~L~~L~Ls~N~l~~-l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          71 PNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             TTTTTTCTTCCEEECCSCCCCE-ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ccccccccccceeeeccccccc-cCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc
Confidence            9999999999999999999985 555788999999999999999999888889899999999999999886554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.3e-15  Score=150.29  Aligned_cols=151  Identities=26%  Similarity=0.252  Sum_probs=101.1

Q ss_pred             cEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           69 RVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .++.|+|++|.+++.. ..|.++++|+.|+|++|.|+..+ .++.+++|++|+|++|++++ +|..+.++++|+.|+|++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~  109 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSF  109 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCS
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccccccccc-cccccccccccccccccccc-cccccccccccccccccc
Confidence            5778888888887754 56778888888888888876542 35667777777777777764 344556666666666665


Q ss_pred             CCCCC-----------------------CCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCC
Q 006559          148 NAYEG-----------------------EIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP  204 (640)
Q Consensus       148 N~l~g-----------------------~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip  204 (640)
                      |.+.+                       .+|...+..+++|+.|++++|+|++..+..+..+++|+.|+|++|+|+ .+|
T Consensus       110 ~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp  188 (266)
T d1p9ag_         110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP  188 (266)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred             cccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccC
Confidence            55442                       233345566777777777777777777777777778888888888887 677


Q ss_pred             cccCCCCC---CCCCCCcccC
Q 006559          205 AWMSPFGG---SSFAGNKNLC  222 (640)
Q Consensus       205 ~~~~~~~~---~~~~gn~~lc  222 (640)
                      ..+..+..   ..+.||+..|
T Consensus       189 ~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         189 KGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTTTTTCCCSEEECCSCCBCC
T ss_pred             hhHCCCCCCCEEEecCCCCCC
Confidence            65544332   3345565544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.51  E-value=5.2e-14  Score=131.44  Aligned_cols=125  Identities=18%  Similarity=0.228  Sum_probs=105.9

Q ss_pred             CEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccC-CccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccC
Q 006559           94 RLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTF-PSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLED  172 (640)
Q Consensus        94 ~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~  172 (640)
                      +.++.++|.|+..|..+.  +++++|+|++|+|++.+ +..|.++++|+.|+|++|++.+..+ ..+..+++|++|+|++
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~-~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-NAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccc-cccccccccceeeecc
Confidence            468999999998876653  68999999999998765 5567999999999999999996555 8899999999999999


Q ss_pred             CcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCCCC---CCCCCccc
Q 006559          173 NRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGGS---SFAGNKNL  221 (640)
Q Consensus       173 N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~~~---~~~gn~~l  221 (640)
                      |+|+...+..|.++++|+.|+|++|+|++..|..+..+...   .+.+|+..
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            99999999999999999999999999998888777655433   33455443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.5e-14  Score=139.85  Aligned_cols=137  Identities=20%  Similarity=0.222  Sum_probs=115.4

Q ss_pred             hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCC
Q 006559           85 EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLP  163 (640)
Q Consensus        85 ~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~  163 (640)
                      ..+.++++|+.|+|++|.+..... .+..+++|+.+++++|+|++..+..|..+++|+.|+|++|++++ +|...|.+++
T Consensus        99 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~-l~~~~f~~l~  177 (284)
T d1ozna_          99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLH  177 (284)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCT
T ss_pred             hhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc-cchhhhcccc
Confidence            567889999999999999987654 57788899999999999998777888899999999999999985 5547889999


Q ss_pred             CCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCCC---CCCCCCcccC
Q 006559          164 NLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGG---SSFAGNKNLC  222 (640)
Q Consensus       164 ~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~~---~~~~gn~~lc  222 (640)
                      +|+.|++++|++++..|..+..+++|+.|++++|++++..|..+.....   ..+.+|+..|
T Consensus       178 ~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             ccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            9999999999999998999999999999999999999888777665443   3445666554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.49  E-value=8.4e-15  Score=148.00  Aligned_cols=121  Identities=27%  Similarity=0.459  Sum_probs=111.0

Q ss_pred             CCCCEEeCCCCcCCCC---CCCCCCCCCCcEEEccc-ccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCc
Q 006559           91 TQLRLLSLKNNLLSSS---NLNLSSWPHLKHLYLSH-NRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLL  166 (640)
Q Consensus        91 ~~L~~L~Ls~N~l~~~---~~~~~~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~  166 (640)
                      .+++.|+|++|.++|.   ++.++++++|++|+|++ |+|+|.+|..|++|++|++|+|++|++.+..| ..+..+++|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~-~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccc-ccccchhhhc
Confidence            3688999999999984   45899999999999997 89999999999999999999999999998776 7789999999


Q ss_pred             EEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCCCCC
Q 006559          167 TLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSPFGG  212 (640)
Q Consensus       167 ~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~~~~  212 (640)
                      .++++.|.+.+.+|..+..++.|+.+++++|.++|.+|..+..+..
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~  174 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK  174 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCT
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccc
Confidence            9999999999999999999999999999999999999988766543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=4.2e-14  Score=121.85  Aligned_cols=103  Identities=30%  Similarity=0.412  Sum_probs=80.1

Q ss_pred             CEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCC
Q 006559           94 RLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDN  173 (640)
Q Consensus        94 ~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N  173 (640)
                      |+|+|++|.++.. +.+..+++|++|+|++|.|+ .+|+.++.+++|+.|+|++|.+++ +|  .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l-~~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~--~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSC-CCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCC-cccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC--ccccccccCeEECCCC
Confidence            5788888888755 35778888888888888887 467778888888888888888874 44  4788888888888888


Q ss_pred             cceeccc-CCcCCCCCCcEEEcccCcCcc
Q 006559          174 RFTGTLY-SVNSSSRSILDFNVSNNQLSG  201 (640)
Q Consensus       174 ~l~g~~~-~~~~~~~~L~~l~ls~N~l~g  201 (640)
                      +++.... ..+..+++|+.|++++|+++.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            8875432 456677888888888888874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.8e-13  Score=134.62  Aligned_cols=132  Identities=24%  Similarity=0.216  Sum_probs=99.3

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .+..|+|++|.+++....+..+++|+.|+|++|.+.+... .+..+.+|+.|++++|.++...+..+..+++|+.|++++
T Consensus        78 ~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~  157 (266)
T d1p9ag_          78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (266)
T ss_dssp             TCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccc
Confidence            3445555555555554555555566666666555555433 355666777777777777766667788899999999999


Q ss_pred             CCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCccc
Q 006559          148 NAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQ  202 (640)
Q Consensus       148 N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~  202 (640)
                      |++++ +|...|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|.+...
T Consensus       158 N~l~~-~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         158 NNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             SCCSC-CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ccccc-cCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            99996 45477899999999999999999 7888777899999999999998753

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.2e-13  Score=137.32  Aligned_cols=136  Identities=22%  Similarity=0.269  Sum_probs=123.1

Q ss_pred             CcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEc
Q 006559           68 HRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDL  145 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  145 (640)
                      .++..|+|+++.+.... ..+..+++|+.+++++|.|++.++ .+..+++|+.|+|++|+|++..|..|.++++|+.|+|
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l  184 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhh
Confidence            36788899998887644 567889999999999999998866 5788999999999999999988999999999999999


Q ss_pred             ccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCC
Q 006559          146 SHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP  204 (640)
Q Consensus       146 s~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip  204 (640)
                      ++|++++..| ..|..+++|++|++++|.+++..+..+..+.+|++|+|++|.+.+.-+
T Consensus       185 ~~N~l~~i~~-~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         185 HQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hhccccccCh-hHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            9999997666 889999999999999999999998899999999999999999997655

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=9.9e-14  Score=119.45  Aligned_cols=118  Identities=25%  Similarity=0.268  Sum_probs=96.2

Q ss_pred             EEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCC
Q 006559           72 KLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYE  151 (640)
Q Consensus        72 ~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~  151 (640)
                      .|+|++++++... .+..+++|++|+|++|.|+..++.++.+++|+.|++++|.|++ +| .+.++++|+.|++++|+++
T Consensus         2 ~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           2 VLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             EEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCC
T ss_pred             EEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccC
Confidence            4789999998654 5899999999999999999887789999999999999999985 44 5899999999999999998


Q ss_pred             CCCCchhcCCCCCCcEEEccCCcceecc---cCCcCCCCCCcEE
Q 006559          152 GEIPMTELTRLPNLLTLRLEDNRFTGTL---YSVNSSSRSILDF  192 (640)
Q Consensus       152 g~~p~~~~~~l~~L~~L~L~~N~l~g~~---~~~~~~~~~L~~l  192 (640)
                      ..-....+..+++|++|++++|+++...   ......+++|+.+
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            5333356889999999999999998532   1122335555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1e-13  Score=125.42  Aligned_cols=111  Identities=18%  Similarity=0.167  Sum_probs=64.3

Q ss_pred             ccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCc
Q 006559           87 LSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLL  166 (640)
Q Consensus        87 l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~  166 (640)
                      +.+..+|+.|+|++|.|+..+.-+..+++|+.|||++|.++. ++ .|..+++|+.|+|++|+++. +|...+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~-l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccC-CCccccccccccc
Confidence            445556666666666666554333556666666666666653 22 35666666666666666653 4423345566666


Q ss_pred             EEEccCCcceeccc-CCcCCCCCCcEEEcccCcCc
Q 006559          167 TLRLEDNRFTGTLY-SVNSSSRSILDFNVSNNQLS  200 (640)
Q Consensus       167 ~L~L~~N~l~g~~~-~~~~~~~~L~~l~ls~N~l~  200 (640)
                      .|+|++|+++.... ..+..+++|+.|++++|.++
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cceeccccccccccccccccccccchhhcCCCccc
Confidence            66666666654221 23455666666666666664

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.2e-13  Score=123.15  Aligned_cols=125  Identities=18%  Similarity=0.132  Sum_probs=104.6

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .++..|+|.++.++.....+..+++|+.|+|++|.|+.. +.+..+++|++|+|++|+++...+..+..+++|+.|+|++
T Consensus        18 ~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~   96 (162)
T d1a9na_          18 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   96 (162)
T ss_dssp             TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             CcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCCccccccccccccceecc
Confidence            367889999999998766678899999999999999875 4688999999999999999976666677899999999999


Q ss_pred             CCCCCCCCc-hhcCCCCCCcEEEccCCcceecc---cCCcCCCCCCcEEEc
Q 006559          148 NAYEGEIPM-TELTRLPNLLTLRLEDNRFTGTL---YSVNSSSRSILDFNV  194 (640)
Q Consensus       148 N~l~g~~p~-~~~~~l~~L~~L~L~~N~l~g~~---~~~~~~~~~L~~l~l  194 (640)
                      |+++. ++. ..+..+++|++|++++|.++...   +..+..+++|+.||-
T Consensus        97 N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          97 NSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccccc-cccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            99984 432 45788999999999999997543   124566889998874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.39  E-value=1.5e-12  Score=130.49  Aligned_cols=152  Identities=22%  Similarity=0.296  Sum_probs=110.7

Q ss_pred             CCCCCCCceEecCC---------CCcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEc
Q 006559           53 PCFDSWRGVTCNPS---------THRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYL  121 (640)
Q Consensus        53 ~c~~~w~gv~C~~~---------~~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L  121 (640)
                      .|.|.|++|.|+..         ...++.|+|++|.++... ..|.++++|+.|++++|.+...++ .+..+++|++|++
T Consensus         7 ~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_           7 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            46679999999753         245788999999998766 478999999999999999998765 5889999999999


Q ss_pred             ccccccccCC------------------------------------------------ccCCCCCCCCEEEcccCCCCCC
Q 006559          122 SHNRFTGTFP------------------------------------------------SGVSSLRHLRRVDLSHNAYEGE  153 (640)
Q Consensus       122 s~N~l~g~~p------------------------------------------------~~~~~l~~L~~L~Ls~N~l~g~  153 (640)
                      ++|+++. +|                                                ..+..+++|+.+++++|.++ .
T Consensus        87 ~~n~l~~-l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~  164 (305)
T d1xkua_          87 SKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T  164 (305)
T ss_dssp             CSSCCSB-CCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred             cCCccCc-CccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-c
Confidence            9988763 22                                                12344556666666666665 3


Q ss_pred             CCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCCcccCC
Q 006559          154 IPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIPAWMSP  209 (640)
Q Consensus       154 ~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip~~~~~  209 (640)
                      +|.   ..+++|+.|++++|..++..+..+..+..++.|++++|.+++..|.++..
T Consensus       165 l~~---~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~  217 (305)
T d1xkua_         165 IPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN  217 (305)
T ss_dssp             CCS---SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             cCc---ccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccc
Confidence            441   23466777777777777777777777777777777777777666655543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.3e-12  Score=117.13  Aligned_cols=110  Identities=23%  Similarity=0.308  Sum_probs=72.8

Q ss_pred             CCCCCCCceEecCCCCcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCC-cCCCCCC-CCCCCCCCcEEEcccccccccC
Q 006559           53 PCFDSWRGVTCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNN-LLSSSNL-NLSSWPHLKHLYLSHNRFTGTF  130 (640)
Q Consensus        53 ~c~~~w~gv~C~~~~~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N-~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~  130 (640)
                      |||+.+.+|+|...            ++...+..+..+++|+.|+|++| .|+..++ .|.++++|+.|+|++|+|+...
T Consensus         5 C~c~~~~~l~c~~~------------~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~   72 (156)
T d2ifga3           5 CCPHGSSGLRCTRD------------GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA   72 (156)
T ss_dssp             SCCSSSSCEECCSS------------CCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC
T ss_pred             CCcCCCCeEEecCC------------CCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc
Confidence            44456788888653            23233344566777788888655 4666544 4777777777777777777766


Q ss_pred             CccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcce
Q 006559          131 PSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFT  176 (640)
Q Consensus       131 p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~  176 (640)
                      |..|..+++|++|+|++|+|+ .+|...+..+ +|+.|+|++|.|.
T Consensus        73 ~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          73 PDAFHFTPRLSRLNLSFNALE-SLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             TTGGGSCSCCCEEECCSSCCS-CCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             cccccccccccceeccCCCCc-ccChhhhccc-cccccccCCCccc
Confidence            777777777777777777777 5664444433 5777777777664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.29  E-value=1.1e-11  Score=116.09  Aligned_cols=124  Identities=24%  Similarity=0.348  Sum_probs=67.9

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccC
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN  148 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  148 (640)
                      ++..|+|+++.+++..+ ++.+++|+.|++++|.+...+ .+..++.|+.|++++|.+...  ..+..+++|+.|++++|
T Consensus        63 nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n  138 (199)
T d2omxa2          63 NLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSN  138 (199)
T ss_dssp             TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSS
T ss_pred             CcCcCccccccccCccc-ccCCccccccccccccccccc-ccccccccccccccccccccc--cccchhhhhHHhhhhhh
Confidence            45555555555555432 555566666666665554432 355555666666665555432  23455666666666666


Q ss_pred             CCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcc
Q 006559          149 AYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSG  201 (640)
Q Consensus       149 ~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g  201 (640)
                      ++.. +|  .+..+++|+.|++++|++++..  .+..+++|+.|++++|+++.
T Consensus       139 ~l~~-~~--~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         139 TISD-IS--ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CCCC-CG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             hhcc-cc--cccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC
Confidence            6552 22  3555666666666666665432  24455666666666666653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.28  E-value=1e-11  Score=116.16  Aligned_cols=125  Identities=23%  Similarity=0.323  Sum_probs=106.7

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccC
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN  148 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  148 (640)
                      +++.|++.+++++.. +.+..+++|++|+|++|.+++.++ +..+++|++|++++|.+.. +| .+.++++|+.|++++|
T Consensus        41 ~l~~L~l~~~~i~~l-~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          41 QVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNN  116 (199)
T ss_dssp             TCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCSS
T ss_pred             CCCEEECCCCCCCCc-cccccCCCcCcCccccccccCccc-ccCCccccccccccccccc-cc-cccccccccccccccc
Confidence            577899998887753 458889999999999999998754 8999999999999999874 44 4889999999999999


Q ss_pred             CCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCccc
Q 006559          149 AYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQ  202 (640)
Q Consensus       149 ~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~  202 (640)
                      .+...   ..+..+++|+.|++++|++...  +.+..+++|+.|++++|++++.
T Consensus       117 ~~~~~---~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l  165 (199)
T d2omxa2         117 QITDI---DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL  165 (199)
T ss_dssp             CCCCC---GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC
T ss_pred             ccccc---cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCC
Confidence            99853   3478899999999999999753  3467799999999999999864

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.1e-11  Score=111.01  Aligned_cols=108  Identities=17%  Similarity=0.163  Sum_probs=92.2

Q ss_pred             CCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccc-cccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEE
Q 006559           91 TQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHN-RFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLR  169 (640)
Q Consensus        91 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N-~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~  169 (640)
                      ...+.++.+++.+...+..+..+++|+.|+|++| .++..-+..|.++++|+.|+|++|+|+. |++..|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCC-ccccccccccccccee
Confidence            3456688999999888778889999999999876 4887667789999999999999999995 6557899999999999


Q ss_pred             ccCCcceecccCCcCCCCCCcEEEcccCcCc
Q 006559          170 LEDNRFTGTLYSVNSSSRSILDFNVSNNQLS  200 (640)
Q Consensus       170 L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~  200 (640)
                      |++|+|+...+..+.. .+|+.|+|++|.|.
T Consensus        87 Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhcc-ccccccccCCCccc
Confidence            9999999655556654 47999999999986

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.23  E-value=2.5e-11  Score=114.53  Aligned_cols=124  Identities=31%  Similarity=0.378  Sum_probs=85.5

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccC
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN  148 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  148 (640)
                      ++..|+|+++.+++.. .++.+++|+.|+|++|.+++.+ .+..+++|+.|++++|.+..  ...+..+++|+.+++++|
T Consensus        69 ~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n  144 (210)
T d1h6ta2          69 NVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNN  144 (210)
T ss_dssp             TCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSS
T ss_pred             CCCEEeCCCccccCcc-ccccCccccccccccccccccc-cccccccccccccccccccc--cccccccccccccccccc
Confidence            5677777777777644 3567777777777777776543 46677777777777777653  234667777777777777


Q ss_pred             CCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcc
Q 006559          149 AYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSG  201 (640)
Q Consensus       149 ~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g  201 (640)
                      .+++.   ..+..+++|+.+++++|++++..+  +.++++|+.|+|++|+|+.
T Consensus       145 ~l~~~---~~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         145 KITDI---TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             CCCCC---GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             ccccc---cccccccccccccccccccccccc--ccCCCCCCEEECCCCCCCC
Confidence            77642   235667778888888887776432  5567778888888887763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.21  E-value=3.3e-11  Score=113.64  Aligned_cols=126  Identities=24%  Similarity=0.391  Sum_probs=107.0

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccC
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN  148 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  148 (640)
                      .++.|++.++.++... .+..+++|+.|+|++|.+++.+ .+..+++|++|++++|++++ +| .+.++++|+.|++++|
T Consensus        47 ~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTS
T ss_pred             CccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccc-cc-cccccccccccccccc
Confidence            4778888888887654 4788999999999999999865 47889999999999999986 44 5889999999999999


Q ss_pred             CCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccC
Q 006559          149 AYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQI  203 (640)
Q Consensus       149 ~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~i  203 (640)
                      .+.. ++  .+..+++|+.+++++|.+++..  ....+++|+.+++++|++++..
T Consensus       123 ~~~~-~~--~l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i~  172 (210)
T d1h6ta2         123 GISD-IN--GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV  172 (210)
T ss_dssp             CCCC-CG--GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCG
T ss_pred             cccc-cc--cccccccccccccccccccccc--cccccccccccccccccccccc
Confidence            9873 43  5788999999999999998643  4556899999999999998643

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.20  E-value=3.5e-11  Score=120.30  Aligned_cols=130  Identities=19%  Similarity=0.258  Sum_probs=106.6

Q ss_pred             cEEEEEeCCCCCCC---CchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEc
Q 006559           69 RVIKLVLEDLDLTG---PAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDL  145 (640)
Q Consensus        69 ~v~~l~l~~~~l~g---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  145 (640)
                      ....++...+....   ....+..+++|+.+++++|.+...+..  .+++|+.|++++|.+++..+..|.+++.++.|++
T Consensus       125 ~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~  202 (305)
T d1xkua_         125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL  202 (305)
T ss_dssp             TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred             cccccccccccccccCCCccccccccccCccccccCCccccCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccc
Confidence            34455555543322   235678899999999999998876433  3689999999999999999999999999999999


Q ss_pred             ccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCccc
Q 006559          146 SHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQ  202 (640)
Q Consensus       146 s~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~  202 (640)
                      ++|.+++..| ..+.++++|++|+|++|.|+ .+|..+..+++|+.|+|++|+|+..
T Consensus       203 s~n~l~~~~~-~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         203 SFNSISAVDN-GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             CSSCCCEECT-TTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             cccccccccc-ccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCcc
Confidence            9999996444 78899999999999999998 4677888899999999999999843

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.18  E-value=3.6e-11  Score=123.94  Aligned_cols=130  Identities=26%  Similarity=0.313  Sum_probs=85.4

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCC----------------
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFP----------------  131 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p----------------  131 (640)
                      ..+..+++.++.++.. +.+..+++|+.|++++|.+++.+ .+..+++|+.|++++|.+++..|                
T Consensus       219 ~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~  296 (384)
T d2omza2         219 TNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ  296 (384)
T ss_dssp             TTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC
T ss_pred             CCCCEEECCCCCCCCc-chhhcccccchhccccCccCCCC-cccccccCCEeeccCcccCCCCccccccccccccccccc
Confidence            3566777777777654 35677788888888888877654 36667777777777777765322                


Q ss_pred             ----ccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcccCC
Q 006559          132 ----SGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQIP  204 (640)
Q Consensus       132 ----~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~ip  204 (640)
                          ..+..+++++.|+|++|++++. +  .+..+++|+.|+|++|+|++ ++ .+..+++|+.|++++|+|++.+|
T Consensus       297 l~~~~~~~~~~~l~~L~ls~n~l~~l-~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         297 LEDISPISNLKNLTYLTLYFNNISDI-S--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             CSCCGGGGGCTTCSEEECCSSCCSCC-G--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG
T ss_pred             cccccccchhcccCeEECCCCCCCCC-c--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh
Confidence                2244556666777777777643 2  25666777777777777765 22 35566777777777777776544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4.1e-11  Score=115.51  Aligned_cols=100  Identities=19%  Similarity=0.217  Sum_probs=78.4

Q ss_pred             CCCCCCCceEecCC---------CCcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCCcCCCCCC--CCCCCCCCcEEE
Q 006559           53 PCFDSWRGVTCNPS---------THRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNNLLSSSNL--NLSSWPHLKHLY  120 (640)
Q Consensus        53 ~c~~~w~gv~C~~~---------~~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~  120 (640)
                      .|.|+++.|.|...         ...++.|+|+++.++... ..|.++++|++|+|++|.+...++  .+..++++++|+
T Consensus         5 ~C~C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1           5 ICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   84 (242)
T ss_dssp             SEEECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEE
T ss_pred             cCCCcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccc
Confidence            46678999999642         135889999999998754 568999999999999999876432  467788888888


Q ss_pred             ccc-ccccccCCccCCCCCCCCEEEcccCCCCC
Q 006559          121 LSH-NRFTGTFPSGVSSLRHLRRVDLSHNAYEG  152 (640)
Q Consensus       121 Ls~-N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g  152 (640)
                      +.. |++....+..|.++++|+.|++++|.+..
T Consensus        85 ~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          85 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             EECCTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             ccccccccccccccccccccccccccchhhhcc
Confidence            764 67777777778888888888888888763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.11  E-value=1e-10  Score=120.46  Aligned_cols=121  Identities=25%  Similarity=0.278  Sum_probs=99.1

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCC---------------------CCCCCCCCcEEEccccccc
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNL---------------------NLSSWPHLKHLYLSHNRFT  127 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~---------------------~~~~l~~L~~L~Ls~N~l~  127 (640)
                      .+..+++.++.+++.. .+..+++|+.|++++|.+++.++                     .+..+++++.|+|++|+++
T Consensus       242 ~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~  320 (384)
T d2omza2         242 NLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS  320 (384)
T ss_dssp             TCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCS
T ss_pred             ccchhccccCccCCCC-cccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCC
Confidence            5677888888887754 36777888888888887765321                     2455679999999999999


Q ss_pred             ccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccC
Q 006559          128 GTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNN  197 (640)
Q Consensus       128 g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N  197 (640)
                      +..  .+..+++|+.|+|++|++++ +|  .+.++++|++|+|++|++++.+|  +.++++|+.|+|++|
T Consensus       321 ~l~--~l~~l~~L~~L~L~~n~l~~-l~--~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         321 DIS--PVSSLTKLQRLFFANNKVSD-VS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCG--GGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCc--ccccCCCCCEEECCCCCCCC-Ch--hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            753  38899999999999999985 54  58899999999999999998765  678999999999998

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.11  E-value=2.1e-10  Score=109.32  Aligned_cols=126  Identities=27%  Similarity=0.382  Sum_probs=78.0

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCC-----------------
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFP-----------------  131 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p-----------------  131 (640)
                      ++..|+++++.+++.. .+..+++|+.|++++|.++.. +.+..+++|+.|++++|...+..+                 
T Consensus        64 ~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~i-~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~  141 (227)
T d1h6ua2          64 NLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQI  141 (227)
T ss_dssp             TCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCC-GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred             CCcEeecCCceeeccc-ccccccccccccccccccccc-ccccccccccccccccccccccchhccccchhhhhchhhhh
Confidence            5667777777766543 366677777777777766543 345566666666666666543211                 


Q ss_pred             ---ccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcc
Q 006559          132 ---SGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSG  201 (640)
Q Consensus       132 ---~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g  201 (640)
                         ..+.++++|+.|++++|.+++.   ..+.++++|+.|+|++|++++..  .+..+++|+.|+|++|+|++
T Consensus       142 ~~~~~~~~~~~L~~L~l~~n~~~~~---~~l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         142 TNISPLAGLTNLQYLSIGNAQVSDL---TPLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCB
T ss_pred             chhhhhccccccccccccccccccc---hhhcccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCC
Confidence               1234556667777777766532   23566777777777777776532  25556777777777777764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.09  E-value=1e-12  Score=122.84  Aligned_cols=116  Identities=21%  Similarity=0.207  Sum_probs=97.2

Q ss_pred             chhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCC
Q 006559           84 AEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLP  163 (640)
Q Consensus        84 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~  163 (640)
                      ...+..|++|+.|+|++|.|+.. +.+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|+++. ++  .+..++
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~i-~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~--~~~~l~  115 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS--GIEKLV  115 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESCC-CCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH--HHHHHH
T ss_pred             hhHHhcccccceeECcccCCCCc-ccccCCccccChhhcccccc-cccccccccccccccccccccccc-cc--cccccc
Confidence            35688999999999999999875 46889999999999999997 567666667789999999999984 43  477889


Q ss_pred             CCcEEEccCCcceeccc-CCcCCCCCCcEEEcccCcCcccCC
Q 006559          164 NLLTLRLEDNRFTGTLY-SVNSSSRSILDFNVSNNQLSGQIP  204 (640)
Q Consensus       164 ~L~~L~L~~N~l~g~~~-~~~~~~~~L~~l~ls~N~l~g~ip  204 (640)
                      +|+.|+|++|+++.... ..+..+++|+.|+|++|.+....+
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccccCcc
Confidence            99999999999986432 456789999999999999876544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.01  E-value=1e-09  Score=104.47  Aligned_cols=127  Identities=20%  Similarity=0.282  Sum_probs=101.2

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccC
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN  148 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  148 (640)
                      .++.|++.+++++.. +.+..+++|+.|+|++|.+.+.. .+..+++|++|++++|.++. ++ .+.++++|+.|++++|
T Consensus        42 ~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~-i~-~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          42 GITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTST  117 (227)
T ss_dssp             TCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTS
T ss_pred             CcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeeccc-cccccccccccccccccccc-cc-cccccccccccccccc
Confidence            588899999988864 56899999999999999998764 48899999999999999873 43 5789999999999999


Q ss_pred             CCCCCCCc-------------------hhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcCcc
Q 006559          149 AYEGEIPM-------------------TELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQLSG  201 (640)
Q Consensus       149 ~l~g~~p~-------------------~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g  201 (640)
                      ...+..+.                   ..+..+++|+.|++++|.+++..+  +..+++|+.|+|++|++++
T Consensus       118 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         118 QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             CCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             cccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchh--hcccccceecccCCCccCC
Confidence            87653221                   124556778888888888775433  5668888888888888875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.99  E-value=2.1e-12  Score=120.72  Aligned_cols=122  Identities=23%  Similarity=0.269  Sum_probs=98.8

Q ss_pred             CcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEccc
Q 006559           68 HRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSH  147 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  147 (640)
                      .++..|+|+++.++.. +.+..+++|+.|+|++|.|+..+.....+++|+.|++++|.++..  +.+..+++|+.|+|++
T Consensus        48 ~~L~~L~Ls~n~I~~i-~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~  124 (198)
T d1m9la_          48 KACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSN  124 (198)
T ss_dssp             TTCCEEECSEEEESCC-CCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSSEEEESE
T ss_pred             cccceeECcccCCCCc-ccccCCccccChhhccccccccccccccccccccccccccccccc--cccccccccccccccc
Confidence            3688999999988854 468899999999999999987654344567899999999999853  3478899999999999


Q ss_pred             CCCCCCCC-chhcCCCCCCcEEEccCCcceecccCC----------cCCCCCCcEEE
Q 006559          148 NAYEGEIP-MTELTRLPNLLTLRLEDNRFTGTLYSV----------NSSSRSILDFN  193 (640)
Q Consensus       148 N~l~g~~p-~~~~~~l~~L~~L~L~~N~l~g~~~~~----------~~~~~~L~~l~  193 (640)
                      |+++. ++ ...+..+++|+.|+|++|.++...+..          +..+++|+.||
T Consensus       125 N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         125 NKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EECCC-HHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             chhcc-ccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            99985 33 246899999999999999998765543          34577888876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.4e-08  Score=95.44  Aligned_cols=135  Identities=19%  Similarity=0.157  Sum_probs=89.5

Q ss_pred             EecCCCCcEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccccccccCC-ccCCCCCC
Q 006559           62 TCNPSTHRVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHNRFTGTFP-SGVSSLRH  139 (640)
Q Consensus        62 ~C~~~~~~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~  139 (640)
                      .|+.. +++  ++..+.+++-.++.+  .++++.|+|++|.|+..++ .|.++++|++|+|++|.+...+| ..|.+++.
T Consensus         5 ~C~C~-~~~--i~c~~~~l~~iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~   79 (242)
T d1xwdc1           5 ICHCS-NRV--FLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK   79 (242)
T ss_dssp             SEEEC-SSE--EEEESCSCSSCCSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTT
T ss_pred             cCCCc-CCE--EEEeCCCCCCcCCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccc
Confidence            34443 344  444555565433322  2478888998888887665 57888888889988888876554 35778888


Q ss_pred             CCEEEccc-CCCCCCCCchhcCCCCCCcEEEccCCcceecccC-CcCCCCCCcEEEcccCcCccc
Q 006559          140 LRRVDLSH-NAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYS-VNSSSRSILDFNVSNNQLSGQ  202 (640)
Q Consensus       140 L~~L~Ls~-N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~-~~~~~~~L~~l~ls~N~l~g~  202 (640)
                      ++.|++.. |++.. ++...|..+++|++|++++|.++...+. ....+..+..+..+++.+...
T Consensus        80 l~~l~~~~~n~l~~-~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i  143 (242)
T d1xwdc1          80 LHEIRIEKANNLLY-INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI  143 (242)
T ss_dssp             CCEEEEECCTTCCE-ECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEE
T ss_pred             cccccccccccccc-cccccccccccccccccchhhhcccccccccccccccccccccccccccc
Confidence            88888764 66664 4436778888888888888888754332 233445555566666666543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.53  E-value=3.2e-07  Score=92.06  Aligned_cols=114  Identities=24%  Similarity=0.234  Sum_probs=79.3

Q ss_pred             cEEEEEeCCCCCCCCchhccCCCCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccC
Q 006559           69 RVIKLVLEDLDLTGPAEVLSRLTQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHN  148 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  148 (640)
                      ++..|+|++++++..++   .+++|+.|+|++|+|+..+..   +.+|+.|++++|+++. ++..   .+.|++|+|++|
T Consensus        39 ~l~~LdLs~~~L~~lp~---~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~-l~~l---p~~L~~L~L~~n  108 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPE---LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNN  108 (353)
T ss_dssp             TCSEEECTTSCCSCCCS---CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSS
T ss_pred             CCCEEEeCCCCCCCCCC---CCCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccch-hhhh---cccccccccccc
Confidence            46678888888876553   357888999999998866433   4578888999988873 3321   145889999999


Q ss_pred             CCCCCCCchhcCCCCCCcEEEccCCcceecccCCcCCCCCCcEEEcccCcC
Q 006559          149 AYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYSVNSSSRSILDFNVSNNQL  199 (640)
Q Consensus       149 ~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~~~~~~~~L~~l~ls~N~l  199 (640)
                      .+. .+|  .++.+++|+.|++++|.++.....    ...+..+.+.++..
T Consensus       109 ~l~-~lp--~~~~l~~L~~L~l~~~~~~~~~~~----~~~l~~l~~~~~~~  152 (353)
T d1jl5a_         109 QLE-KLP--ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQL  152 (353)
T ss_dssp             CCS-SCC--CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCC
T ss_pred             ccc-ccc--chhhhccceeeccccccccccccc----cccccchhhccccc
Confidence            887 566  257788999999988888754321    23444555544443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.52  E-value=2.3e-07  Score=93.25  Aligned_cols=99  Identities=28%  Similarity=0.262  Sum_probs=80.4

Q ss_pred             CCCCEEeCCCCcCCCCCCCCCCCCCCcEEEcccccccccCCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEc
Q 006559           91 TQLRLLSLKNNLLSSSNLNLSSWPHLKHLYLSHNRFTGTFPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRL  170 (640)
Q Consensus        91 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L  170 (640)
                      .+|+.|||++|.|+..|.   .+++|++|+|++|+|+ .+|..   +.+|+.|++++|+++ .++ . +  .+.|++|+|
T Consensus        38 ~~l~~LdLs~~~L~~lp~---~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~-~-l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE---LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALS-D-L--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS---CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCC-S-C--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCCCCCC---CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhh-h-h--ccccccccc
Confidence            478999999999987653   3578999999999998 67865   457999999999998 455 2 1  247999999


Q ss_pred             cCCcceecccCCcCCCCCCcEEEcccCcCcccC
Q 006559          171 EDNRFTGTLYSVNSSSRSILDFNVSNNQLSGQI  203 (640)
Q Consensus       171 ~~N~l~g~~~~~~~~~~~L~~l~ls~N~l~g~i  203 (640)
                      ++|.++. +|. +..+++|+.|++++|.++...
T Consensus       106 ~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_         106 SNNQLEK-LPE-LQNSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             CSSCCSS-CCC-CTTCTTCCEEECCSSCCSCCC
T ss_pred             ccccccc-ccc-hhhhccceeeccccccccccc
Confidence            9999985 454 467899999999999987543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=4.3e-08  Score=96.33  Aligned_cols=80  Identities=28%  Similarity=0.277  Sum_probs=51.3

Q ss_pred             cEEEEEeCCCCCCCC--chhccCCCCCCEEeCCCCcCCCCCC-CCCCCCCCcEEEcccc-ccccc-CCccCCCCCCCCEE
Q 006559           69 RVIKLVLEDLDLTGP--AEVLSRLTQLRLLSLKNNLLSSSNL-NLSSWPHLKHLYLSHN-RFTGT-FPSGVSSLRHLRRV  143 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~--~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N-~l~g~-~p~~~~~l~~L~~L  143 (640)
                      ++..|+|+++.++..  ...+..+++|++|+|+++.+++... .+..+++|++|+|+++ .++.. +...+.++++|+.|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            567777777665542  2456777888888888887765322 4566778888888774 45421 22223456777777


Q ss_pred             EcccC
Q 006559          144 DLSHN  148 (640)
Q Consensus       144 ~Ls~N  148 (640)
                      +|+++
T Consensus       127 ~ls~c  131 (284)
T d2astb2         127 NLSWC  131 (284)
T ss_dssp             ECCCC
T ss_pred             ccccc
Confidence            77763

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.8e-07  Score=91.76  Aligned_cols=143  Identities=23%  Similarity=0.257  Sum_probs=90.8

Q ss_pred             CcEEEEEeCCCCCCCCc-hhccCCCCCCEEeCCCC-cCCCCCC--CCCCCCCCcEEEcccc-ccccc-CCccCC-CCCCC
Q 006559           68 HRVIKLVLEDLDLTGPA-EVLSRLTQLRLLSLKNN-LLSSSNL--NLSSWPHLKHLYLSHN-RFTGT-FPSGVS-SLRHL  140 (640)
Q Consensus        68 ~~v~~l~l~~~~l~g~~-~~l~~l~~L~~L~Ls~N-~l~~~~~--~~~~l~~L~~L~Ls~N-~l~g~-~p~~~~-~l~~L  140 (640)
                      .++..|+|.++.++... ..+..+++|+.|+|+++ .++....  -..++++|++|+|+++ .++.. ++..+. ..++|
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L  150 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  150 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccccc
Confidence            36788889888776543 56788899999999884 5653211  1346788999999884 44321 222222 24678


Q ss_pred             CEEEcccC--CCCCCCCchhcCCCCCCcEEEccCC-cceecccCCcCCCCCCcEEEccc-CcCcccCCcccCCC
Q 006559          141 RRVDLSHN--AYEGEIPMTELTRLPNLLTLRLEDN-RFTGTLYSVNSSSRSILDFNVSN-NQLSGQIPAWMSPF  210 (640)
Q Consensus       141 ~~L~Ls~N--~l~g~~p~~~~~~l~~L~~L~L~~N-~l~g~~~~~~~~~~~L~~l~ls~-N~l~g~ip~~~~~~  210 (640)
                      +.|+|++.  .++..--...+.++++|++|+|++| .+++.....+..+++|+.|+|++ +.+++.....++..
T Consensus       151 ~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~  224 (284)
T d2astb2         151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI  224 (284)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             chhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcC
Confidence            88888753  3332111122345778888888775 47766666677778888888887 46665544444433

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1e-08  Score=91.82  Aligned_cols=39  Identities=33%  Similarity=0.345  Sum_probs=17.0

Q ss_pred             CCCCCCEEeCCCCcCCCCCC---CCCCCCCCcEEEccccccc
Q 006559           89 RLTQLRLLSLKNNLLSSSNL---NLSSWPHLKHLYLSHNRFT  127 (640)
Q Consensus        89 ~l~~L~~L~Ls~N~l~~~~~---~~~~l~~L~~L~Ls~N~l~  127 (640)
                      .+++|++|+|++|+|+...+   .+..+++|+.|+|++|.++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            34455555555555544321   1233444444444444444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=7.6e-08  Score=100.44  Aligned_cols=58  Identities=26%  Similarity=0.328  Sum_probs=26.5

Q ss_pred             cEEEEEeCCCCCCCC--chhccCCCCCCEEeCCCCcCCCCC-----CCCCCCCCCcEEEcccccc
Q 006559           69 RVIKLVLEDLDLTGP--AEVLSRLTQLRLLSLKNNLLSSSN-----LNLSSWPHLKHLYLSHNRF  126 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~--~~~l~~l~~L~~L~Ls~N~l~~~~-----~~~~~l~~L~~L~Ls~N~l  126 (640)
                      .+..||++++++++.  ...+..+++|+.|+|++|.++...     ..+..+++|++|||++|.|
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i   67 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL   67 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcC
Confidence            345555555555543  133444455555555555444210     0123444455555555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.08  E-value=3.4e-07  Score=92.21  Aligned_cols=132  Identities=18%  Similarity=0.229  Sum_probs=77.6

Q ss_pred             cEEEEEeCCCCCCCC--------c------hhccCCCCCCEEeCCCCcCCCCCC-----CCCCCCCCcEEEccccccccc
Q 006559           69 RVIKLVLEDLDLTGP--------A------EVLSRLTQLRLLSLKNNLLSSSNL-----NLSSWPHLKHLYLSHNRFTGT  129 (640)
Q Consensus        69 ~v~~l~l~~~~l~g~--------~------~~l~~l~~L~~L~Ls~N~l~~~~~-----~~~~l~~L~~L~Ls~N~l~g~  129 (640)
                      .+..|+++++.++..        .      ......+.|+.|++++|.++....     .+..++.|+.|+|++|.++..
T Consensus       122 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  201 (344)
T d2ca6a1         122 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE  201 (344)
T ss_dssp             TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH
T ss_pred             cchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccccccccccccc
Confidence            567778877766321        0      112355677777777777654211     134456777777777776531


Q ss_pred             -----CCccCCCCCCCCEEEcccCCCCCC----CCchhcCCCCCCcEEEccCCcceecccC----CcC--CCCCCcEEEc
Q 006559          130 -----FPSGVSSLRHLRRVDLSHNAYEGE----IPMTELTRLPNLLTLRLEDNRFTGTLYS----VNS--SSRSILDFNV  194 (640)
Q Consensus       130 -----~p~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~~l~~L~~L~L~~N~l~g~~~~----~~~--~~~~L~~l~l  194 (640)
                           +...+..+++|+.|+|++|.++..    +. ..+..+++|++|+|++|.+++.-..    .+.  ....|+.|++
T Consensus       202 g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~-~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~l  280 (344)
T d2ca6a1         202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL  280 (344)
T ss_dssp             HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEEC
T ss_pred             ccccchhhhhcchhhhccccccccccccccccccc-ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEEC
Confidence                 233456677777777777776421    11 2355667777777777777653111    111  2355777777


Q ss_pred             ccCcCcc
Q 006559          195 SNNQLSG  201 (640)
Q Consensus       195 s~N~l~g  201 (640)
                      ++|+|+.
T Consensus       281 s~N~i~~  287 (344)
T d2ca6a1         281 QYNEIEL  287 (344)
T ss_dssp             CSSCCBH
T ss_pred             CCCcCCh
Confidence            7777753

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=4.3e-07  Score=80.86  Aligned_cols=87  Identities=23%  Similarity=0.289  Sum_probs=66.3

Q ss_pred             CCCCCCcEEEccccccccc--CCccCCCCCCCCEEEcccCCCCCCCCchhcCCCCCCcEEEccCCcceecccC-------
Q 006559          111 SSWPHLKHLYLSHNRFTGT--FPSGVSSLRHLRRVDLSHNAYEGEIPMTELTRLPNLLTLRLEDNRFTGTLYS-------  181 (640)
Q Consensus       111 ~~l~~L~~L~Ls~N~l~g~--~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~l~~L~~L~L~~N~l~g~~~~-------  181 (640)
                      ..+++|++|+|++|+++..  ++..+..+++|+.|||++|.++. ++.-.+.....|+.|+|++|.++.....       
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            4688999999999999864  34556789999999999999984 4433344456799999999999875542       


Q ss_pred             CcCCCCCCcEEEcccCcCc
Q 006559          182 VNSSSRSILDFNVSNNQLS  200 (640)
Q Consensus       182 ~~~~~~~L~~l~ls~N~l~  200 (640)
                      .+..+++|+.||  ++.+.
T Consensus       141 i~~~~P~L~~LD--g~~v~  157 (162)
T d1koha1         141 IRERFPKLLRLD--GHELP  157 (162)
T ss_dssp             HHTTSTTCCEET--TEECC
T ss_pred             HHHHCCCCCEEC--cCCCc
Confidence            255688999875  55543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.97  E-value=3.6e-07  Score=92.07  Aligned_cols=41  Identities=27%  Similarity=0.277  Sum_probs=18.5

Q ss_pred             CCCCCCcEEEccCCcceec----ccCCcCCCCCCcEEEcccCcCc
Q 006559          160 TRLPNLLTLRLEDNRFTGT----LYSVNSSSRSILDFNVSNNQLS  200 (640)
Q Consensus       160 ~~l~~L~~L~L~~N~l~g~----~~~~~~~~~~L~~l~ls~N~l~  200 (640)
                      ..+++|+.|+|++|.|+..    +...+..+++|+.|+|++|.|+
T Consensus       212 ~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         212 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             cchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            3344555555555554321    2222333445555555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=7.1e-07  Score=92.79  Aligned_cols=111  Identities=18%  Similarity=0.208  Sum_probs=85.2

Q ss_pred             CCCCEEeCCCCcCCCCC--CCCCCCCCCcEEEcccccccc----cCCccCCCCCCCCEEEcccCCCCCC----CCchhcC
Q 006559           91 TQLRLLSLKNNLLSSSN--LNLSSWPHLKHLYLSHNRFTG----TFPSGVSSLRHLRRVDLSHNAYEGE----IPMTELT  160 (640)
Q Consensus        91 ~~L~~L~Ls~N~l~~~~--~~~~~l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~  160 (640)
                      .+|+.||+++|++++..  .-+..+++|+.|+|++|.++-    .++..+..+++|+.|||++|.++..    +. ..+.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~-~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL-QGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH-HTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHH-HHHh
Confidence            36899999999998742  125668899999999999873    3455677899999999999998521    11 1122


Q ss_pred             -CCCCCcEEEccCCcceec----ccCCcCCCCCCcEEEcccCcCccc
Q 006559          161 -RLPNLLTLRLEDNRFTGT----LYSVNSSSRSILDFNVSNNQLSGQ  202 (640)
Q Consensus       161 -~l~~L~~L~L~~N~l~g~----~~~~~~~~~~L~~l~ls~N~l~g~  202 (640)
                       ..++|+.|+|++|+++..    ++..+..+++|+.|+|++|.++..
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~  127 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA  127 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhh
Confidence             235899999999999864    455667789999999999998753

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.89  E-value=3.6e-05  Score=73.54  Aligned_cols=130  Identities=16%  Similarity=0.145  Sum_probs=83.9

Q ss_pred             ccC-cceEEEEEeCCCcEEEEEEeccc--cchHHHHHHHHHHhccC-CCcccceeEEEEcCCeEEEEEeccCCCCHHHhh
Q 006559          343 KGC-VGATYKVVLDGGDVVVVKRIRER--KKKREVDEWLRVIGGLR-HSNIVSIRAYCNGKDELFLVYDYLPHGSLHSLL  418 (640)
Q Consensus       343 ~G~-fg~Vy~~~~~~~~~vavK~l~~~--~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lV~Ey~~~gsL~~~l  418 (640)
                      +|+ .+.||+.... +..+++|+....  .....+.+|...+..+. +--+.++++++...+..++|||++++..+.+..
T Consensus        23 ~G~s~~~v~rv~~~-~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv~~~l~G~~~~~~~  101 (263)
T d1j7la_          23 EGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEY  101 (263)
T ss_dssp             CCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSSEEHHHHT
T ss_pred             CCCCCCcEEEEEeC-CCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEEEEecccccccccc
Confidence            344 3579988654 455667776543  22334566766665543 333567788888888999999999998876544


Q ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHhhcCC----------------------------------------------
Q 006559          419 HGSRGPGRMPVDWNKRLKLASDSAKGLAFLHGYN----------------------------------------------  452 (640)
Q Consensus       419 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~----------------------------------------------  452 (640)
                      ....       .   ...++.++++.++.||...                                              
T Consensus       102 ~~~~-------~---~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (263)
T d1j7la_         102 EDEQ-------S---PEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELY  171 (263)
T ss_dssp             TTCS-------C---HHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGSTTCSCSSHHHHH
T ss_pred             cccc-------c---HHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhcccccccchHHHHHH
Confidence            3211       1   1223444555555555211                                              


Q ss_pred             ----------CCCceecCCCCCCeEECCCCCeEEccCCccc
Q 006559          453 ----------KAHLFHGHLSSSNIVVDQLGNACISDIGVHQ  483 (640)
Q Consensus       453 ----------~~~ivHrdlk~~NILl~~~~~~kl~DfGl~~  483 (640)
                                ...++|+|+.+.|||+++++.+-|.||+.+.
T Consensus       172 ~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T d1j7la_         172 DFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             HHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             HHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhcc
Confidence                      1227899999999999987767799998765

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.82  E-value=2.1e-05  Score=74.87  Aligned_cols=73  Identities=16%  Similarity=0.212  Sum_probs=51.0

Q ss_pred             ccccCc-ceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhccCC--CcccceeEEEEcCCeEEEEEeccCCCCH
Q 006559          341 LGKGCV-GATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRH--SNIVSIRAYCNGKDELFLVYDYLPHGSL  414 (640)
Q Consensus       341 iG~G~f-g~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H--~niv~l~~~~~~~~~~~lV~Ey~~~gsL  414 (640)
                      +..|.. +.||+...+++..+++|.-.... ...+..|.+.++.+..  -.+.+++++..+.+..++||||+++.++
T Consensus        18 ~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~-~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~   93 (255)
T d1nd4a_          18 QTIGCSDAAVFRLSAQGRPVLFVKTDLSGA-LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDL   93 (255)
T ss_dssp             CSCTTSSCEEEEEECTTSCCEEEEEECSCT-TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEET
T ss_pred             cCCcccCCeEEEEEeCCCCEEEEEeCCccC-HhHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecccc
Confidence            444543 57899998888888889765442 3345666666665533  2356678888888899999999987654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.32  E-value=1.7e-05  Score=70.46  Aligned_cols=112  Identities=13%  Similarity=0.195  Sum_probs=63.8

Q ss_pred             cCCCCCCEEeCCCC-cCCCCC-----CCCCCCCCCcEEEccccccccc----CCccCCCCCCCCEEEcccCCCCCCCC--
Q 006559           88 SRLTQLRLLSLKNN-LLSSSN-----LNLSSWPHLKHLYLSHNRFTGT----FPSGVSSLRHLRRVDLSHNAYEGEIP--  155 (640)
Q Consensus        88 ~~l~~L~~L~Ls~N-~l~~~~-----~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g~~p--  155 (640)
                      .+.++|+.|+|+++ .++...     ..+...+.|++|+|++|.+...    +...+...+.|+.|+|++|.++..--  
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34567777777763 454321     1245556777777777777532    11233445677778887777763200  


Q ss_pred             -chhcCCCCCCcEEEccCCcceec-------ccCCcCCCCCCcEEEcccCcC
Q 006559          156 -MTELTRLPNLLTLRLEDNRFTGT-------LYSVNSSSRSILDFNVSNNQL  199 (640)
Q Consensus       156 -~~~~~~l~~L~~L~L~~N~l~g~-------~~~~~~~~~~L~~l~ls~N~l  199 (640)
                       ...+...++|++|+|++|.+...       +...+...++|+.|+++.+..
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence             01345556778888877754421       233344456777777766543

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=96.80  E-value=0.0022  Score=64.72  Aligned_cols=73  Identities=8%  Similarity=0.028  Sum_probs=43.4

Q ss_pred             ccccccCcceEEEEEeCC-CcEEEEEEeccc-----c----chHHHHHHHHHHhcc---CCCcccceeEEEEcCCeEEEE
Q 006559          339 ELLGKGCVGATYKVVLDG-GDVVVVKRIRER-----K----KKREVDEWLRVIGGL---RHSNIVSIRAYCNGKDELFLV  405 (640)
Q Consensus       339 ~~iG~G~fg~Vy~~~~~~-~~~vavK~l~~~-----~----~~~~~~~e~~~l~~l---~H~niv~l~~~~~~~~~~~lV  405 (640)
                      +.||.|....||++...+ ++.++||.-...     .    .......|.+.++.+   -...+.+++.+.  ++..++|
T Consensus        32 ~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~d--~~~~~lv  109 (392)
T d2pula1          32 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSD--TEMAVTV  109 (392)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEE--TTTTEEE
T ss_pred             EEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEEc--CCCCEEE
Confidence            458999999999998654 667888865321     0    111233455555433   223455566553  4556899


Q ss_pred             EeccCCCC
Q 006559          406 YDYLPHGS  413 (640)
Q Consensus       406 ~Ey~~~gs  413 (640)
                      |||+++..
T Consensus       110 mE~L~~~~  117 (392)
T d2pula1         110 MEDLSHLK  117 (392)
T ss_dssp             ECCCTTSE
T ss_pred             EeccCCcc
Confidence            99997643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.80  E-value=0.00024  Score=62.75  Aligned_cols=89  Identities=20%  Similarity=0.315  Sum_probs=64.5

Q ss_pred             CCCCCcEEEcccc-ccccc----CCccCCCCCCCCEEEcccCCCCCC--CC-chhcCCCCCCcEEEccCCcceec----c
Q 006559          112 SWPHLKHLYLSHN-RFTGT----FPSGVSSLRHLRRVDLSHNAYEGE--IP-MTELTRLPNLLTLRLEDNRFTGT----L  179 (640)
Q Consensus       112 ~l~~L~~L~Ls~N-~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g~--~p-~~~~~~l~~L~~L~L~~N~l~g~----~  179 (640)
                      +.++|+.|+|+++ .++..    +-..+...++|+.|+|++|.+...  .. ...+...+.|+.|+|++|.++..    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4678999999974 56432    233466778999999999998631  11 02344568899999999999854    2


Q ss_pred             cCCcCCCCCCcEEEcccCcCc
Q 006559          180 YSVNSSSRSILDFNVSNNQLS  200 (640)
Q Consensus       180 ~~~~~~~~~L~~l~ls~N~l~  200 (640)
                      ...+...++|+.|++++|.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHhCCcCCEEECCCCcCC
Confidence            334566788999999999765

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.0037  Score=61.18  Aligned_cols=136  Identities=15%  Similarity=0.089  Sum_probs=77.4

Q ss_pred             ceEEEEEeCCCcEEEEEEeccc-cchHHHHHHHHHHhccCCCcc-----cce--eEEEEcCCeEEEEEeccCCCCHH---
Q 006559          347 GATYKVVLDGGDVVVVKRIRER-KKKREVDEWLRVIGGLRHSNI-----VSI--RAYCNGKDELFLVYDYLPHGSLH---  415 (640)
Q Consensus       347 g~Vy~~~~~~~~~vavK~l~~~-~~~~~~~~e~~~l~~l~H~ni-----v~l--~~~~~~~~~~~lV~Ey~~~gsL~---  415 (640)
                      -.||++..++|..+++|+.+.. ...+++.+|.+.+..|....+     +..  -..+...+..+.+++|+++..+.   
T Consensus        36 N~vy~v~~~dg~~~VlK~~rp~~~s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G~~~~~~~  115 (325)
T d1zyla1          36 NRVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQFEADN  115 (325)
T ss_dssp             SEEEEECCTTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCEECCSSC
T ss_pred             ceeEEEEcCCCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCCcCCCCCC
Confidence            3799999999999999998765 356677888877766643222     111  11223456788999999763321   


Q ss_pred             ---------------HhhccCCCCCCCCcCHHH----------------------HHHHHHHHHHHHHH-hhcCCCCCce
Q 006559          416 ---------------SLLHGSRGPGRMPVDWNK----------------------RLKLASDSAKGLAF-LHGYNKAHLF  457 (640)
Q Consensus       416 ---------------~~l~~~~~~~~~~l~~~~----------------------~~~i~~~ia~gL~y-LH~~~~~~iv  457 (640)
                                     ..........+...++..                      ....+.++...+.- ........+|
T Consensus       116 ~~~~~~lG~~LA~lH~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~li  195 (325)
T d1zyla1         116 IDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHWREDFTVLRL  195 (325)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHCCSCSCCEEC
T ss_pred             HHHHHHHHHHHHHHHhhcccCCccccCCCCHHHHhhhhHHHHHHcCcCCHHHHHHHHHHHHHHHHHHHHhccccCCceee
Confidence                           111111111122222211                      11122222222221 1122245689


Q ss_pred             ecCCCCCCeEECCCCCeEEccCCcccc
Q 006559          458 HGHLSSSNIVVDQLGNACISDIGVHQL  484 (640)
Q Consensus       458 Hrdlk~~NILl~~~~~~kl~DfGl~~~  484 (640)
                      |+|+.+.|||++++  ..+.||+-+..
T Consensus       196 HgDlh~~NvL~~~~--~~~IDFdd~~~  220 (325)
T d1zyla1         196 HGDCHAGNILWRDG--PMFVDLDDARN  220 (325)
T ss_dssp             CSSCSGGGEEESSS--EEECCCTTCCE
T ss_pred             cCCCCcccEEEeCC--ceEEechhccc
Confidence            99999999999753  45899987653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.31  E-value=0.00015  Score=63.97  Aligned_cols=112  Identities=15%  Similarity=0.213  Sum_probs=65.5

Q ss_pred             cCCCCCCEEeCCC-CcCCCCCC-----CCCCCCCCcEEEccccccccc----CCccCCCCCCCCEEEcccCCCCCCCC--
Q 006559           88 SRLTQLRLLSLKN-NLLSSSNL-----NLSSWPHLKHLYLSHNRFTGT----FPSGVSSLRHLRRVDLSHNAYEGEIP--  155 (640)
Q Consensus        88 ~~l~~L~~L~Ls~-N~l~~~~~-----~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g~~p--  155 (640)
                      .+.++|+.|+|++ |.++....     .+...++|++|+|++|.++..    +-..+...++|+.|++++|.+...--  
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4557777787776 44543211     244567778888888777543    22234456778888888877753210  


Q ss_pred             -chhcCCCCCCcEEEc--cCCccee----cccCCcCCCCCCcEEEcccCcC
Q 006559          156 -MTELTRLPNLLTLRL--EDNRFTG----TLYSVNSSSRSILDFNVSNNQL  199 (640)
Q Consensus       156 -~~~~~~l~~L~~L~L--~~N~l~g----~~~~~~~~~~~L~~l~ls~N~l  199 (640)
                       ...+...++|+.++|  ++|.+..    .+...+...++|+.|+++.|+.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence             023455667776555  4566643    2333344567788888776654

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.99  E-value=0.0087  Score=60.11  Aligned_cols=71  Identities=11%  Similarity=0.136  Sum_probs=45.1

Q ss_pred             cccccCcceEEEEEeCCC--------cEEEEEEeccccchHHHHHHHHHHhccCCCcc-cceeEEEEcCCeEEEEEeccC
Q 006559          340 LLGKGCVGATYKVVLDGG--------DVVVVKRIRERKKKREVDEWLRVIGGLRHSNI-VSIRAYCNGKDELFLVYDYLP  410 (640)
Q Consensus       340 ~iG~G~fg~Vy~~~~~~~--------~~vavK~l~~~~~~~~~~~e~~~l~~l~H~ni-v~l~~~~~~~~~~~lV~Ey~~  410 (640)
                      .|+.|-.-.+|++...++        ..|+++..-.........+|.++++.+.-.++ .++++++.+    .+||||++
T Consensus        49 ~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g~~~~~idr~~E~~i~~~ls~~gl~Pkll~~~~~----g~I~efi~  124 (395)
T d1nw1a_          49 RIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLEEYIP  124 (395)
T ss_dssp             EECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEECCCC
T ss_pred             EcCCccccceEEEEeCCCCccccCCCCcEEEEecCCcchhhHHHHHHHHHHHHHhCCCCCeEEEEcCC----ceEEEEec
Confidence            466677778999987543        34666655433333445567777776643344 467777743    68999998


Q ss_pred             CCCH
Q 006559          411 HGSL  414 (640)
Q Consensus       411 ~gsL  414 (640)
                      +..+
T Consensus       125 g~~l  128 (395)
T d1nw1a_         125 SRPL  128 (395)
T ss_dssp             EEEC
T ss_pred             cccC
Confidence            6443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.16  E-value=0.00095  Score=58.54  Aligned_cols=108  Identities=18%  Similarity=0.208  Sum_probs=76.0

Q ss_pred             CcEEEEEeCCC-CCCCC-----chhccCCCCCCEEeCCCCcCCCCCC-----CCCCCCCCcEEEccccccccc----CCc
Q 006559           68 HRVIKLVLEDL-DLTGP-----AEVLSRLTQLRLLSLKNNLLSSSNL-----NLSSWPHLKHLYLSHNRFTGT----FPS  132 (640)
Q Consensus        68 ~~v~~l~l~~~-~l~g~-----~~~l~~l~~L~~L~Ls~N~l~~~~~-----~~~~l~~L~~L~Ls~N~l~g~----~p~  132 (640)
                      ..++.|+|+++ .++..     ...+...++|+.|+|++|.++....     .+...+.|+.|++++|.++..    +-.
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            36788888874 45432     2456788999999999999875321     245678899999999998643    334


Q ss_pred             cCCCCCCCCEEEc--ccCCCCCC----CCchhcCCCCCCcEEEccCCcce
Q 006559          133 GVSSLRHLRRVDL--SHNAYEGE----IPMTELTRLPNLLTLRLEDNRFT  176 (640)
Q Consensus       133 ~~~~l~~L~~L~L--s~N~l~g~----~p~~~~~~l~~L~~L~L~~N~l~  176 (640)
                      .+...++|+.++|  ++|.+...    +. ..+...++|+.|+++.|...
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La-~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIA-NMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHH-HHHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHH-HHHHhCCCcCEEeCcCCCCc
Confidence            5677889987665  56777521    11 23557789999999888654

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.88  E-value=0.095  Score=50.17  Aligned_cols=142  Identities=13%  Similarity=0.081  Sum_probs=71.3

Q ss_pred             ccccCcceEEEEEeCCCcEEEEEEeccccchHHHHHHHHHHhccCCCcc-----cce-eE--EEEcCCeEEEEEeccCCC
Q 006559          341 LGKGCVGATYKVVLDGGDVVVVKRIRERKKKREVDEWLRVIGGLRHSNI-----VSI-RA--YCNGKDELFLVYDYLPHG  412 (640)
Q Consensus       341 iG~G~fg~Vy~~~~~~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~ni-----v~l-~~--~~~~~~~~~lV~Ey~~~g  412 (640)
                      |..|---+.|+.+..+|+ +++|+.......+++..|++++..|.+.++     +.. -|  +..-......++.+..+.
T Consensus        26 i~~G~~N~ny~v~t~~g~-yVLri~~~~~~~~~l~~~~~~l~~L~~~g~pvp~pi~~~~g~~~~~~~~~~~~~~~~~~g~  104 (316)
T d2ppqa1          26 IAEGVENSNFLLHTTKDP-LILTLYEKRVEKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAALISFLEGM  104 (316)
T ss_dssp             ECC---EEEEEEEESSCC-EEEEEECC---CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEEEEECCCCB
T ss_pred             CCCCcccCeEEEEECCCc-EEEEEcCCCCCHHHHHHHHHHHHhhhhccccccccceecCCCcceeeecccceeeeecccc
Confidence            455666788999887765 778887654444556666666665543322     111 00  112244566777777654


Q ss_pred             CHHH--------------hhc----cCCCCC--CCCcCHHH----------------HHHHHHHHHHHHHHhhc-CCCCC
Q 006559          413 SLHS--------------LLH----GSRGPG--RMPVDWNK----------------RLKLASDSAKGLAFLHG-YNKAH  455 (640)
Q Consensus       413 sL~~--------------~l~----~~~~~~--~~~l~~~~----------------~~~i~~~ia~gL~yLH~-~~~~~  455 (640)
                      ....              .++    ......  .....|..                ....+......+.-.+. .-+.+
T Consensus       105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~g  184 (316)
T d2ppqa1         105 WLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHWPKDLPAG  184 (316)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHHHHHHHCCCSSCEE
T ss_pred             cccccchhHHHHHHHHHHhhhhhhhhcccccccccchhhcchhhhHHHHhhhhcchhHHHHHHHHHHhhhccCccccccc
Confidence            3211              000    000000  00000100                11112222222222221 12456


Q ss_pred             ceecCCCCCCeEECCCCCeEEccCCccc
Q 006559          456 LFHGHLSSSNIVVDQLGNACISDIGVHQ  483 (640)
Q Consensus       456 ivHrdlk~~NILl~~~~~~kl~DfGl~~  483 (640)
                      +||+|+.+.||+++.+...-|.||+.+.
T Consensus       185 iIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         185 VIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             EECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cccCCcchhhhhcccccceeEecccccc
Confidence            9999999999999988877899998864