Citrus Sinensis ID: 006567

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640

MKTIWFLPLVFLYFGLFSFGYCKSVSARPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGLSKEPPETLYAQPFNRSSTIQHLHSVIWPGETLSKPRGWVFPNNGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAHSK

ccEEEEHHHHHHHHHHHHccccccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEcccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHccccccEEEEccccccccccccccEEEccccHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHcccccccEEEEEccHHHHHcccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccHHHHHHHHHHccEEEccccEEEcccccccccEEEEEEcccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEEcccccccccccEEEcccccEEEEHHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHcccccEEEccEEEEcccccccccccccccccEEEEEEEccccccccEEEccccHHHHHHHHHHHHHHHHHEEEEEccccccccccccccEEEHHHHHHHHccccccc

ccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHcccccEEEEcccccccccccccEEEEEccccHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHcccEEEEEEEccccccccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHcccccccEEEEEEcccHHHccccccccccHHcccEEEEEccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccHHHHHHHHHccEccccEEEEEcccccEccccEEEEEEcccccEEEEEEEccccEEEEccccccccccccccccccccEEEEcccccccccEEEEcccccEEEEEEccccccEEEEccccccccEEEEHHHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHcccccEEEEEEEEEEEcEEEEEcccccHcccEEEEEEcccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHcccccccHHEEEEHHHHHHHHHcccc

MKTIWFLPLVFLYFGLFsfgycksvsarpavvnVGALFTLDSTIGRVAKIAIEEAVKdvnsnssilhgtklnitmqssncsgFIGMVEALRFMETDIVAIIGPQCSTVAHIVSYVSNElqvpllsfgvtdptlsslqypffvrttqsdsYQMTAVAEMVSYYGWNAVSVIFvdneygrngvSALNDKLAERRCrisyksgippesgvntGYVMDLLVKVALMESRVIVLhvspslgfQVFSVAKYLGMMGNGYVWIATDWLAYMLdsaslpsetLESMQGVLVLrqhipesdrkkNFLSRWKnltggslgmnsyglyaYDSVWLLAHAIESFFnqggkisfsndsrlktmeggnlhlgamsiFDDGMLLLGNILqsnlvgltgplkfnsdrsLIHAAYDIINVIGTGFRMIGYwsnysglskeppetlyaqpfnrsstiqhlhsviwpgetlskprgwvfpnngkllkigvpnrasYREFVSKvrgsdmfqgFCIDVFTAAVNLlpyavpyqfvafgdghknpsytqLVDSITTGVFDAVVGDITIvtnrtkivdfsqpyaasglvvvvpfrklntgawaflrpfsplmwTVTACFFVVVGIVVWILEHRindefrgppkrqVITILWFSLSTLFFAHSK

MKTIWFLPLVFLYFGLFSFGYCKSVSARPAVVNVGALFTLDSTIGRVAKIAIEEavkdvnsnssiLHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISyksgippesgvntGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRqhipesdrkknfLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGLSKEPPETLYAQPFNRSSTIQHLHSVIWPGETLSKPRGWVFPNNGkllkigvpnrASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRindefrgppkrQVITILWFSLSTLFFAHSK

**TIWFLPLVFLYFGLFSFGYCKSVSARPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASL****LESMQGVLVLRQHIP****KKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGLS*****TLYAQPFNRSSTIQHLHSVIWPGETLSKPRGWVFPNNGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFA***

*KTIWFLPLVFLYFGLFSFGYCKS**ARPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPP********VMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGLSKEPPETLYAQPFNRSSTIQHLHSVIWPGETLSKPRGWVFPNNGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAH**

*KTIWFLPLVFLYFGLFSFGYCKSVSARPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGLSKEPPETL*****NRSSTIQHLHSVIWPGETLSKPRGWVFPNNGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAH**

iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHi

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SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHiii

SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooo

SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		640	2.2.26 [Sep-21-2011]
Q9C8E7		933	Glutamate receptor 3.3 OS	yes	no	0.993	0.681	0.645	0.0
Q7XP59		938	Glutamate receptor 3.1 OS	yes	no	0.993	0.678	0.566	0.0
Q84W41		903	Glutamate receptor 3.6 OS	no	no	0.979	0.694	0.549	0.0
Q93YT1		912	Glutamate receptor 3.2 OS	no	no	0.957	0.672	0.558	0.0
Q9SW97		953	Glutamate receptor 3.5 OS	no	no	0.948	0.636	0.546	0.0
Q8GXJ4		959	Glutamate receptor 3.4 OS	no	no	0.960	0.641	0.555	0.0
Q7XJL2		921	Glutamate receptor 3.1 OS	no	no	0.957	0.665	0.551	0.0
Q9SDQ4		921	Glutamate receptor 3.7 OS	no	no	0.937	0.651	0.459	1e-160
Q8LGN0		952	Glutamate receptor 2.7 OS	no	no	0.945	0.635	0.360	1e-108
Q9SHV1		920	Glutamate receptor 2.2 OS	no	no	0.918	0.639	0.360	7e-99

>sp\|Q9C8E7\|GLR33_ARATH Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1	Back alignment and function desciption

 Score =  875 bits (2261), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/644 (64%), Positives = 512/644 (79%), Gaps = 8/644 (1%)

Query: 1   MKTIW-FLPLVFLYFGLFSFGYCKSVSARPAVVNVGALFTLDSTIGRVAKIAIEEAVKDV 59
           MK +W F  L FL  GLF     ++ S +P VV +G++F+ DS IG+VAKIAI+EAVKDV
Sbjct: 1   MKQLWTFFFLSFLCSGLFR----RTHSEKPKVVKIGSIFSFDSVIGKVAKIAIDEAVKDV 56

Query: 60  NSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHIVSYVSNEL 119
           NSN  IL GTK +++MQ+SNCSGF+GMVEALRFME DIV IIGPQCS VAH++S+++NEL
Sbjct: 57  NSNPDILSGTKFSVSMQNSNCSGFMGMVEALRFMEKDIVGIIGPQCSVVAHMISHMANEL 116

Query: 120 QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRN 179
           +VPLLSF VTDP +S LQ+P+F+RTTQSD YQM A+A +V +YGW  V  +FVD+++GRN
Sbjct: 117 RVPLLSFAVTDPVMSPLQFPYFIRTTQSDLYQMDAIASIVDFYGWKEVIAVFVDDDFGRN 176

Query: 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQV 239
           GV+ALNDKLA RR RI+YK+G+ P++ VN   +M++L+K+ L++ R++V+HV   LGF V
Sbjct: 177 GVAALNDKLASRRLRITYKAGLHPDTAVNKNEIMNMLIKIMLLQPRIVVIHVYSELGFAV 236

Query: 240 FSVAKYLGMMGNGYVWIATDWLAYMLDSAS-LPSETLESMQGVLVLRQHIPESDRKKNFL 298
           F  AKYLGMMGNGYVWIATDWL+  LDS+S LP+E LE++QGVLVLR H P+SD K+ F 
Sbjct: 237 FKEAKYLGMMGNGYVWIATDWLSTNLDSSSPLPAERLETIQGVLVLRPHTPDSDFKREFF 296

Query: 299 SRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTM-EGGNLHL 357
            RW+ ++G SL +N+YGLYAYDSV LLA  ++ FF  GG ISFSN S L T+ + GNL+L
Sbjct: 297 KRWRKMSGASLALNTYGLYAYDSVMLLARGLDKFFKDGGNISFSNHSMLNTLGKSGNLNL 356

Query: 358 GAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNY 417
            AM++FD G  LL +IL + +VGLTG L+F  DRS    AYDIINV GTG R IGYWSN+
Sbjct: 357 EAMTVFDGGEALLKDILGTRMVGLTGQLQFTPDRSRTRPAYDIINVAGTGVRQIGYWSNH 416

Query: 418 SGLSKEPPETLYAQPFNRSSTIQHLHSVIWPGETLSKPRGWVFPNNGKLLKIGVPNRASY 477
           SGLS   PE LY +     ST   L  VIWPGET +KPRGWVF NNGK LKIGVP R SY
Sbjct: 417 SGLSTVLPELLYTKEKPNMSTSPKLKHVIWPGETFTKPRGWVFSNNGKELKIGVPLRVSY 476

Query: 478 REFVSKVRGSD-MFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGV 536
           +EFVS++RG++ MF+GFCIDVFTAAVNLLPYAVP +F+ +G+G +NPSYT +V+ ITTG 
Sbjct: 477 KEFVSQIRGTENMFKGFCIDVFTAAVNLLPYAVPVKFIPYGNGKENPSYTHMVEMITTGN 536

Query: 537 FDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACF 596
           FD VVGD+ IVTNRTKIVDF+QPYAASGLVVV PF+KLN+GAWAFLRPF+ LMW VT C 
Sbjct: 537 FDGVVGDVAIVTNRTKIVDFTQPYAASGLVVVAPFKKLNSGAWAFLRPFNRLMWAVTGCC 596

Query: 597 FVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAHSK 640
           F+ VGIVVWILEHR NDEFRGPPKRQ +TILWFS ST+FFAH +
Sbjct: 597 FLFVGIVVWILEHRTNDEFRGPPKRQCVTILWFSFSTMFFAHRE 640

Glutamate-gated receptor that probably acts as non-selective cation channel, at least in roots and hypocotyls. Can be triggered by Ala, Asn, Cys, Glu, Gly, Ser and glutathione (a tripeptide consisting of Glu-Gly-Cys). May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q7XP59\|GLR31_ORYSJ Glutamate receptor 3.1 OS=Oryza sativa subsp. japonica GN=GLR3.1 PE=1 SV=1	Back alignment and function description

>sp\|Q84W41\|GLR36_ARATH Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1	Back alignment and function description

>sp\|Q93YT1\|GLR32_ARATH Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2	Back alignment and function description

>sp\|Q9SW97\|GLR35_ARATH Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=GLR3.5 PE=2 SV=2	Back alignment and function description

>sp\|Q8GXJ4\|GLR34_ARATH Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2	Back alignment and function description

>sp\|Q7XJL2\|GLR31_ARATH Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=GLR3.1 PE=2 SV=2	Back alignment and function description

>sp\|Q9SDQ4\|GLR37_ARATH Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=GLR3.7 PE=2 SV=2	Back alignment and function description

>sp\|Q8LGN0\|GLR27_ARATH Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3	Back alignment and function description

>sp\|Q9SHV1\|GLR22_ARATH Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		640
225457598		934	PREDICTED: glutamate receptor 3.3 [Vitis	1.0	0.685	0.728	0.0
224083342		897	glutamate-gated kainate-type ion channel	0.984	0.702	0.737	0.0
255539276		927	glutamate receptor 3 plant, putative [Ri	0.968	0.668	0.743	0.0
147832740		916	hypothetical protein VITISV_021339 [Viti	0.953	0.665	0.736	0.0
224065661		859	glutamate-gated kainate-type ion channel	0.985	0.734	0.709	0.0
357933579		808	glutamate receptor 3.3 [Solanum lycopers	1.0	0.792	0.700	0.0
356517233		929	PREDICTED: glutamate receptor 3.3-like [	0.960	0.662	0.699	0.0
357467129		914	Glutamate-gated kainate-type ion channel	0.987	0.691	0.681	0.0
449455617		918	PREDICTED: glutamate receptor 3.3-like [	1.0	0.697	0.687	0.0
15217450		933	glutamate receptor 3.3 [Arabidopsis thal	0.993	0.681	0.645	0.0

>gi\|225457598\|ref\|XP_002272859.1\| PREDICTED: glutamate receptor 3.3 [Vitis vinifera] gi\|297745576\|emb\|CBI40741.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1004 bits (2597), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/641 (72%), Positives = 558/641 (87%), Gaps = 1/641 (0%)

Query: 1   MKTIWFLPLVFLYFGLFSFGYCKSVSARPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVN 60
           M  IW L L+FL FG+ S G  K++S+RPAVVNVGA+FT +STIGRVAKIAIEEAVKDVN
Sbjct: 1   MNVIWLLSLLFLCFGVLSNGSQKNLSSRPAVVNVGAVFTFESTIGRVAKIAIEEAVKDVN 60

Query: 61  SNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQ 120
           S++ +L GTK  +TM++SNCSGFIGM+ AL+FMET+ +AIIGPQ S VAH++S+V+NELQ
Sbjct: 61  SDAGVLTGTKFVLTMRNSNCSGFIGMIGALQFMETETIAIIGPQSSVVAHMISHVANELQ 120

Query: 121 VPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNG 180
           VPLLSF  TDPTLSSLQ+PFFVRTTQSD YQM A+ E+V YYGW +V  IF+D++YGRNG
Sbjct: 121 VPLLSFAATDPTLSSLQFPFFVRTTQSDLYQMKAITELVDYYGWRSVIAIFIDDDYGRNG 180

Query: 181 VSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVF 240
           VSAL+D LAE+R +IS+K GIPP +  + G +MD+LVKV+++ESR+IVLHV+P +GF+VF
Sbjct: 181 VSALDDALAEKRLKISHKEGIPPGASASQGDIMDILVKVSVLESRIIVLHVNPDIGFKVF 240

Query: 241 SVAKYLGMMGNGYVWIATDWLAYMLDSAS-LPSETLESMQGVLVLRQHIPESDRKKNFLS 299
           SVA+YLGMM NGYVWIATDWL+ +LD++S L S+T++SMQGVLVLR+H P+SDRK+ FLS
Sbjct: 241 SVARYLGMMQNGYVWIATDWLSSVLDTSSPLASDTMDSMQGVLVLRRHTPDSDRKRAFLS 300

Query: 300 RWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGA 359
           RWK LTGGSLG+NSYGLYAYD+VWLLAHA+++FFNQGG ISFSNDS+L ++  G+ HL  
Sbjct: 301 RWKKLTGGSLGLNSYGLYAYDTVWLLAHALDAFFNQGGTISFSNDSKLLSIGRGSRHLEE 360

Query: 360 MSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSG 419
           M++FD GMLLL NIL+SN VGLTGP KF SDRSL   A+DIINVIGTG+R IGYWSNYSG
Sbjct: 361 MNVFDGGMLLLNNILKSNFVGLTGPFKFTSDRSLYAPAFDIINVIGTGYRQIGYWSNYSG 420

Query: 420 LSKEPPETLYAQPFNRSSTIQHLHSVIWPGETLSKPRGWVFPNNGKLLKIGVPNRASYRE 479
           LS E PE LY +P NRSS  Q L+ V+WPGETLSKPRGWVFPNNGKLLKIGVPNR SYRE
Sbjct: 421 LSTETPEALYGKPPNRSSVNQRLYGVVWPGETLSKPRGWVFPNNGKLLKIGVPNRVSYRE 480

Query: 480 FVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDA 539
           FVS+VRG+DMF+GFCIDVFTAAV LLPYAVP+Q+V+ GDGHKNP+Y++LV  +  G  DA
Sbjct: 481 FVSRVRGTDMFKGFCIDVFTAAVTLLPYAVPFQYVSVGDGHKNPNYSELVRMVAEGELDA 540

Query: 540 VVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACFFVV 599
           VVGDI IVT+RT+IVDF+QPYA+SGLVVV PFRKLN+GAWAFLRPFSPLMW VTACFF+V
Sbjct: 541 VVGDIAIVTSRTRIVDFTQPYASSGLVVVAPFRKLNSGAWAFLRPFSPLMWGVTACFFIV 600

Query: 600 VGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAHSK 640
           +GIVVWILEHRINDEFRGPPK Q+ITILWFS ST+FFAH +
Sbjct: 601 IGIVVWILEHRINDEFRGPPKHQIITILWFSFSTMFFAHRE 641

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224083342\|ref\|XP_002306988.1\| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi\|222856437\|gb\|EEE93984.1\| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255539276\|ref\|XP_002510703.1\| glutamate receptor 3 plant, putative [Ricinus communis] gi\|223551404\|gb\|EEF52890.1\| glutamate receptor 3 plant, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|147832740\|emb\|CAN72607.1\| hypothetical protein VITISV_021339 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224065661\|ref\|XP_002301908.1\| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi\|222843634\|gb\|EEE81181.1\| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357933579\|dbj\|BAL15056.1\| glutamate receptor 3.3 [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|356517233\|ref\|XP_003527293.1\| PREDICTED: glutamate receptor 3.3-like [Glycine max]	Back alignment and taxonomy information

>gi\|357467129\|ref\|XP_003603849.1\| Glutamate-gated kainate-type ion channel receptor subunit GluR5 [Medicago truncatula] gi\|355492897\|gb\|AES74100.1\| Glutamate-gated kainate-type ion channel receptor subunit GluR5 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449455617\|ref\|XP_004145549.1\| PREDICTED: glutamate receptor 3.3-like [Cucumis sativus] gi\|449485091\|ref\|XP_004157067.1\| PREDICTED: glutamate receptor 3.3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|15217450\|ref\|NP_174978.1\| glutamate receptor 3.3 [Arabidopsis thaliana] gi\|41017227\|sp\|Q9C8E7.1\|GLR33_ARATH RecName: Full=Glutamate receptor 3.3; AltName: Full=Ligand-gated ion channel 3.3; Flags: Precursor gi\|12322630\|gb\|AAG51316.1\|AC025815_3 ligand-gated ion channel, putative [Arabidopsis thaliana] gi\|332193804\|gb\|AEE31925.1\| glutamate receptor 3.3 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		640
TAIR\|locus:2206095		933	GLR3.3 "glutamate receptor 3.3	0.990	0.679	0.647	7.8e-229
TAIR\|locus:2081805		903	GLR3.6 "glutamate receptor 3.6	0.976	0.692	0.551	2.1e-194
TAIR\|locus:2122128		912	GLUR2 "glutamate receptor 2" [	0.989	0.694	0.550	1.6e-191
TAIR\|locus:2207165		959	GLR3.4 "AT1G05200" [Arabidopsi	0.95	0.633	0.562	2e-189
TAIR\|locus:2062586		921	GLR5 "glutamate receptor 5" [A	0.937	0.651	0.459	9e-148
TAIR\|locus:2066107		952	GLR2.7 "glutamate receptor 2.7	0.943	0.634	0.366	3.8e-101
TAIR\|locus:2047256		920	GLR2.2 "glutamate receptor 2.2	0.957	0.666	0.354	6.6e-97
TAIR\|locus:2047251		895	GLR2.3 "glutamate receptor 2.3	0.954	0.682	0.337	9.3e-91
TAIR\|locus:2181196		901	GLR2.1 "glutamate receptor 2.1	0.954	0.678	0.339	5.9e-89
TAIR\|locus:2066086		947	GLR2.8 "glutamate receptor 2.8	0.912	0.616	0.340	5.3e-88

TAIR\|locus:2206095 GLR3.3 "glutamate receptor 3.3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2208 (782.3 bits), Expect = 7.8e-229, P = 7.8e-229
 Identities = 416/642 (64%), Positives = 511/642 (79%)

Query:     1 MKTIW-FLPLVFLYFGLFSFGYCKSVSARPAVVNVGALFTLDSTIGRVAKIAIEEAVKDV 59
             MK +W F  L FL  GLF     ++ S +P VV +G++F+ DS IG+VAKIAI+EAVKDV
Sbjct:     1 MKQLWTFFFLSFLCSGLFR----RTHSEKPKVVKIGSIFSFDSVIGKVAKIAIDEAVKDV 56

Query:    60 NSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHIVSYVSNEL 119
             NSN  IL GTK +++MQ+SNCSGF+GMVEALRFME DIV IIGPQCS VAH++S+++NEL
Sbjct:    57 NSNPDILSGTKFSVSMQNSNCSGFMGMVEALRFMEKDIVGIIGPQCSVVAHMISHMANEL 116

Query:   120 QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRN 179
             +VPLLSF VTDP +S LQ+P+F+RTTQSD YQM A+A +V +YGW  V  +FVD+++GRN
Sbjct:   117 RVPLLSFAVTDPVMSPLQFPYFIRTTQSDLYQMDAIASIVDFYGWKEVIAVFVDDDFGRN 176

Query:   180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQV 239
             GV+ALNDKLA RR RI+YK+G+ P++ VN   +M++L+K+ L++ R++V+HV   LGF V
Sbjct:   177 GVAALNDKLASRRLRITYKAGLHPDTAVNKNEIMNMLIKIMLLQPRIVVIHVYSELGFAV 236

Query:   240 FSVAKYLGMMGNGYVWIATDWLAYMLDSAS-LPSETLESMQGVLVLRQHIPESDRKKNFL 298
             F  AKYLGMMGNGYVWIATDWL+  LDS+S LP+E LE++QGVLVLR H P+SD K+ F 
Sbjct:   237 FKEAKYLGMMGNGYVWIATDWLSTNLDSSSPLPAERLETIQGVLVLRPHTPDSDFKREFF 296

Query:   299 SRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTM-EGGNLHL 357
              RW+ ++G SL +N+YGLYAYDSV LLA  ++ FF  GG ISFSN S L T+ + GNL+L
Sbjct:   297 KRWRKMSGASLALNTYGLYAYDSVMLLARGLDKFFKDGGNISFSNHSMLNTLGKSGNLNL 356

Query:   358 GAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNY 417
              AM++FD G  LL +IL + +VGLTG L+F  DRS    AYDIINV GTG R IGYWSN+
Sbjct:   357 EAMTVFDGGEALLKDILGTRMVGLTGQLQFTPDRSRTRPAYDIINVAGTGVRQIGYWSNH 416

Query:   418 SGLSKEPPETLYAQPFNRSSTIQHLHSVIWPGETLSKPRGWVFPNNGKLLKIGVPNRASY 477
             SGLS   PE LY +     ST   L  VIWPGET +KPRGWVF NNGK LKIGVP R SY
Sbjct:   417 SGLSTVLPELLYTKEKPNMSTSPKLKHVIWPGETFTKPRGWVFSNNGKELKIGVPLRVSY 476

Query:   478 REFVSKVRGSD-MFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGV 536
             +EFVS++RG++ MF+GFCIDVFTAAVNLLPYAVP +F+ +G+G +NPSYT +V+ ITTG 
Sbjct:   477 KEFVSQIRGTENMFKGFCIDVFTAAVNLLPYAVPVKFIPYGNGKENPSYTHMVEMITTGN 536

Query:   537 FDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFSPLMWTVTACF 596
             FD VVGD+ IVTNRTKIVDF+QPYAASGLVVV PF+KLN+GAWAFLRPF+ LMW VT C 
Sbjct:   537 FDGVVGDVAIVTNRTKIVDFTQPYAASGLVVVAPFKKLNSGAWAFLRPFNRLMWAVTGCC 596

Query:   597 FVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLFFAH 638
             F+ VGIVVWILEHR NDEFRGPPKRQ +TILWFS ST+FFAH
Sbjct:   597 FLFVGIVVWILEHRTNDEFRGPPKRQCVTILWFSFSTMFFAH 638

GO:0004965 "G-protein coupled GABA receptor activity" evidence=IEA

GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0005217 "intracellular ligand-gated ion channel activity" evidence=ISS

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=NAS

GO:0009416 "response to light stimulus" evidence=NAS

GO:0005262 "calcium channel activity" evidence=IMP

GO:0006816 "calcium ion transport" evidence=IMP

GO:0008066 "glutamate receptor activity" evidence=IMP

GO:0071230 "cellular response to amino acid stimulus" evidence=IMP

GO:0009630 "gravitropism" evidence=IMP

GO:0030003 "cellular cation homeostasis" evidence=RCA

TAIR\|locus:2081805 GLR3.6 "glutamate receptor 3.6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2122128 GLUR2 "glutamate receptor 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2207165 GLR3.4 "AT1G05200" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2062586 GLR5 "glutamate receptor 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2066107 GLR2.7 "glutamate receptor 2.7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2047256 GLR2.2 "glutamate receptor 2.2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2047251 GLR2.3 "glutamate receptor 2.3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2181196 GLR2.1 "glutamate receptor 2.1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2066086 GLR2.8 "glutamate receptor 2.8" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C8E7	GLR33_ARATH	No assigned EC number	0.6459	0.9937	0.6816	yes	no
Q7XP59	GLR31_ORYSJ	No assigned EC number	0.5665	0.9937	0.6780	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.6.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00002906001	SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (930 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		640
cd06366		350	cd06366, PBP1_GABAb_receptor, Ligand-binding domai	1e-130
pfam01094		343	pfam01094, ANF_receptor, Receptor family ligand bi	2e-77
cd06350		348	cd06350, PBP1_GPCR_family_C_like, Ligand-binding d	8e-72
cd06269		298	cd06269, PBP1_glutamate_receptors_like, Family C G	1e-51
cd04509		299	cd04509, PBP1_ABC_transporter_GCPR_C_like, Family	4e-30
cd06352		389	cd06352, PBP1_NPR_GC_like, Ligand-binding domain o	8e-27
cd06268		298	cd06268, PBP1_ABC_transporter_LIVBP_like, Periplas	2e-24
cd06351		328	cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leuci	7e-23
cd06379		377	cd06379, PBP1_iGluR_NMDA_NR1, N-terminal leucine/i	3e-22
cd06363		410	cd06363, PBP1_Taste_receptor, Ligand-binding domai	3e-21
cd06367		362	cd06367, PBP1_iGluR_NMDA, N-terminal leucine/isole	7e-21
cd06362		452	cd06362, PBP1_mGluR, Ligand binding domain of the	1e-19
COG0683		366	COG0683, LivK, ABC-type branched-chain amino acid	2e-17
cd01391		269	cd01391, Periplasmic_Binding_Protein_Type_1, Type	7e-17
cd06370		404	cd06370, PBP1_Speract_GC_like, Ligand-binding doma	5e-15
cd06368		324	cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leuc	6e-15
cd06376		463	cd06376, PBP1_mGluR_groupIII, Ligand-binding domai	3e-14
cd06361		403	cd06361, PBP1_GPC6A_like, Ligand-binding domain of	1e-13
cd06346		312	cd06346, PBP1_ABC_ligand_binding_like_11, Type I p	6e-13
cd06374		472	cd06374, PBP1_mGluR_groupI, Ligand binding domain	2e-12
cd06375		458	cd06375, PBP1_mGluR_groupII, Ligand binding domain	9e-12
cd06382		327	cd06382, PBP1_iGluR_Kainate, N-terminal leucine/is	3e-11
cd06340		347	cd06340, PBP1_ABC_ligand_binding_like_6, Type I pe	5e-11
cd06364		510	cd06364, PBP1_CaSR, Ligand-binding domain of the C	1e-10
cd06373		396	cd06373, PBP1_NPR_like, Ligand binding domain of n	1e-10
pfam13458		343	pfam13458, Peripla_BP_6, Periplasmic binding prote	6e-10
pfam00060		268	pfam00060, Lig_chan, Ligand-gated ion channel	1e-09
COG0834		275	COG0834, HisJ, ABC-type amino acid transport/signa	9e-09
cd06380		382	cd06380, PBP1_iGluR_AMPA, N-terminal leucine/isole	2e-08
cd00134		218	cd00134, PBPb, Bacterial periplasmic transport sys	7e-08
pfam00497		220	pfam00497, SBP_bac_3, Bacterial extracellular solu	1e-07
cd06393		384	cd06393, PBP1_iGluR_Kainate_GluR5_7, N-terminal le	2e-07
cd06365		469	cd06365, PBP1_Pheromone_receptor, Ligand-binding d	4e-07
smart00062		219	smart00062, PBPb, Bacterial periplasmic substrate-	6e-07
cd06391		400	cd06391, PBP1_iGluR_delta_2, N-terminal leucine/is	2e-06
cd06330		346	cd06330, PBP1_Arsenic_SBP_like, Periplasmic solute	3e-06
cd06349		340	cd06349, PBP1_ABC_ligand_binding_like_14, Type I p	6e-06
cd06345		344	cd06345, PBP1_ABC_ligand_binding_like_10, Type I p	8e-06
cd06342		334	cd06342, PBP1_ABC_LIVBP_like, Type I periplasmic l	1e-05
cd06333		312	cd06333, PBP1_ABC-type_HAAT_like, Type I periplasm	2e-05
cd06386		387	cd06386, PBP1_NPR_C_like, Ligand-binding domain of	9e-05
TIGR01096		250	TIGR01096, 3A0103s03R, lysine-arginine-ornithine-b	9e-04
cd06372		391	cd06372, PBP1_GC_G_like, Ligand-binding domain of	0.004

>gnl\|CDD\|107361 cd06366, PBP1_GABAb_receptor, Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA)	Back alignment and domain information

 Score =  387 bits (995), Expect = e-130
 Identities = 159/401 (39%), Positives = 219/401 (54%), Gaps = 62/401 (15%)

Query: 33  NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALR 91
            +GA+F L  S IG+ A  AIE A++DVN+++SIL G +L + ++ S C        AL 
Sbjct: 1   RIGAIFDLSGSWIGKAALPAIEMALEDVNADNSILPGYRLVLHVRDSKCDPVQAASAALD 60

Query: 92  FMET-DIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDS 149
            +E   +VAIIGPQCS+VA  V+ V+NE  VP+LSF  T P+LSS LQYP+F RTT SDS
Sbjct: 61  LLENKPVVAIIGPQCSSVAEFVAEVANEWNVPVLSFAATSPSLSSRLQYPYFFRTTPSDS 120

Query: 150 YQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNT 209
            Q  A+A ++  +GW  V+ I+ D++YG  G+  L D L E    ISY++  PP +  + 
Sbjct: 121 SQNPAIAALLKKFGWRRVATIYEDDDYGSGGLPDLVDALQEAGIEISYRAAFPPSANDDD 180

Query: 210 GYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSAS 269
             + D L K+   +SRVIV+H SP L  +VF  A  LGMMG GYVWI TDWL+    S+S
Sbjct: 181 --ITDALKKLKEKDSRVIVVHFSPDLARRVFCEAYKLGMMGKGYVWILTDWLSSNWWSSS 238

Query: 270 --LPSETLESMQGVLVLRQHIPE-SDRKKNFLSRWKNLTGGS----LGMNSYGLYAYDSV 322
                E LE+MQGV+ +R ++P  S   + F SRW+   G         + Y LYAYD+V
Sbjct: 239 DCTDEEMLEAMQGVIGVRSYVPNSSMTLQEFTSRWRKRFGNENPELTEPSIYALYAYDAV 298

Query: 323 WLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLT 382
           W                                                    +N  GL+
Sbjct: 299 W--------------------------------------------------ASTNFNGLS 308

Query: 383 GPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGLSKE 423
           GP++F+  R L   A++IIN+IG G+R IG+WS+ SGLS  
Sbjct: 309 GPVQFDGGRRLASPAFEIINIIGKGYRKIGFWSSESGLSVF 349

Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example. Length = 350

>gnl\|CDD\|216296 pfam01094, ANF_receptor, Receptor family ligand binding region	Back alignment and domain information

>gnl\|CDD\|153138 cd06350, PBP1_GPCR_family_C_like, Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs)	Back alignment and domain information

>gnl\|CDD\|153137 cd06269, PBP1_glutamate_receptors_like, Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors	Back alignment and domain information

>gnl\|CDD\|107261 cd04509, PBP1_ABC_transporter_GCPR_C_like, Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems	Back alignment and domain information

>gnl\|CDD\|107347 cd06352, PBP1_NPR_GC_like, Ligand-binding domain of membrane guanylyl-cyclase receptors	Back alignment and domain information

>gnl\|CDD\|107263 cd06268, PBP1_ABC_transporter_LIVBP_like, Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily	Back alignment and domain information

>gnl\|CDD\|107346 cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs)	Back alignment and domain information

>gnl\|CDD\|107374 cd06379, PBP1_iGluR_NMDA_NR1, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor	Back alignment and domain information

>gnl\|CDD\|107358 cd06363, PBP1_Taste_receptor, Ligand-binding domain of the T1R taste receptor	Back alignment and domain information

>gnl\|CDD\|107362 cd06367, PBP1_iGluR_NMDA, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors	Back alignment and domain information

>gnl\|CDD\|107357 cd06362, PBP1_mGluR, Ligand binding domain of the metabotropic glutamate receptors (mGluR)	Back alignment and domain information

>gnl\|CDD\|223755 COG0683, LivK, ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|107248 cd01391, Periplasmic_Binding_Protein_Type_1, Type 1 periplasmic binding fold superfamily	Back alignment and domain information

>gnl\|CDD\|107365 cd06370, PBP1_Speract_GC_like, Ligand-binding domain of membrane bound guanylyl cyclases	Back alignment and domain information

>gnl\|CDD\|107363 cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors	Back alignment and domain information

>gnl\|CDD\|107371 cd06376, PBP1_mGluR_groupIII, Ligand-binding domain of the group III metabotropic glutamate receptor	Back alignment and domain information

>gnl\|CDD\|107356 cd06361, PBP1_GPC6A_like, Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor	Back alignment and domain information

>gnl\|CDD\|107341 cd06346, PBP1_ABC_ligand_binding_like_11, Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions	Back alignment and domain information

>gnl\|CDD\|107369 cd06374, PBP1_mGluR_groupI, Ligand binding domain of the group I metabotropic glutamate receptor	Back alignment and domain information

>gnl\|CDD\|107370 cd06375, PBP1_mGluR_groupII, Ligand binding domain of the group II metabotropic glutamate receptor	Back alignment and domain information

>gnl\|CDD\|107377 cd06382, PBP1_iGluR_Kainate, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors	Back alignment and domain information

>gnl\|CDD\|107335 cd06340, PBP1_ABC_ligand_binding_like_6, Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions	Back alignment and domain information

>gnl\|CDD\|107359 cd06364, PBP1_CaSR, Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily	Back alignment and domain information

>gnl\|CDD\|107368 cd06373, PBP1_NPR_like, Ligand binding domain of natriuretic peptide receptor (NPR) family	Back alignment and domain information

>gnl\|CDD\|222144 pfam13458, Peripla_BP_6, Periplasmic binding protein	Back alignment and domain information

>gnl\|CDD\|215685 pfam00060, Lig_chan, Ligand-gated ion channel	Back alignment and domain information

>gnl\|CDD\|223904 COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|107375 cd06380, PBP1_iGluR_AMPA, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor	Back alignment and domain information

>gnl\|CDD\|238078 cd00134, PBPb, Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions	Back alignment and domain information

>gnl\|CDD\|215950 pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3	Back alignment and domain information

>gnl\|CDD\|107388 cd06393, PBP1_iGluR_Kainate_GluR5_7, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor	Back alignment and domain information

>gnl\|CDD\|107360 cd06365, PBP1_Pheromone_receptor, Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily	Back alignment and domain information

>gnl\|CDD\|214497 smart00062, PBPb, Bacterial periplasmic substrate-binding proteins	Back alignment and domain information

>gnl\|CDD\|107386 cd06391, PBP1_iGluR_delta_2, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family	Back alignment and domain information

>gnl\|CDD\|107325 cd06330, PBP1_Arsenic_SBP_like, Periplasmic solute-binding domain of active transport proteins	Back alignment and domain information

>gnl\|CDD\|107344 cd06349, PBP1_ABC_ligand_binding_like_14, Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems	Back alignment and domain information

>gnl\|CDD\|107340 cd06345, PBP1_ABC_ligand_binding_like_10, Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions	Back alignment and domain information

>gnl\|CDD\|107337 cd06342, PBP1_ABC_LIVBP_like, Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine)	Back alignment and domain information

>gnl\|CDD\|107328 cd06333, PBP1_ABC-type_HAAT_like, Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids	Back alignment and domain information

>gnl\|CDD\|107381 cd06386, PBP1_NPR_C_like, Ligand-binding domain of type C natriuretic peptide receptor	Back alignment and domain information

>gnl\|CDD\|233269 TIGR01096, 3A0103s03R, lysine-arginine-ornithine-binding periplasmic protein	Back alignment and domain information

>gnl\|CDD\|107367 cd06372, PBP1_GC_G_like, Ligand-binding domain of membrane guanylyl cyclase G	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		640
KOG1054		897	consensus Glutamate-gated AMPA-type ion channel re	100.0
KOG4440		993	consensus NMDA selective glutamate-gated ion chann	100.0
KOG1053		1258	consensus Glutamate-gated NMDA-type ion channel re	100.0
cd06392		400	PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/v	100.0
cd06390		364	PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucin	100.0
cd06393		384	PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isol	100.0
cd06387		372	PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucin	100.0
cd06374		472	PBP1_mGluR_groupI Ligand binding domain of the gro	100.0
cd06362		452	PBP1_mGluR Ligand binding domain of the metabotrop	100.0
cd06375		458	PBP1_mGluR_groupII Ligand binding domain of the gr	100.0
cd06365		469	PBP1_Pheromone_receptor Ligand-binding domain of t	100.0
cd06376		463	PBP1_mGluR_groupIII Ligand-binding domain of the g	100.0
cd06388		371	PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucin	100.0
cd06379		377	PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/	100.0
cd06361		403	PBP1_GPC6A_like Ligand-binding domain of the promi	100.0
cd06389		370	PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucin	100.0
cd06364		510	PBP1_CaSR Ligand-binding domain of the CaSR calciu	100.0
cd06391		400	PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/v	100.0
cd06367		362	PBP1_iGluR_NMDA N-terminal leucine/isoleucine/vali	100.0
cd06380		382	PBP1_iGluR_AMPA N-terminal leucine/isoleucine/vali	100.0
cd06386		387	PBP1_NPR_C_like Ligand-binding domain of type C na	100.0
cd06366		350	PBP1_GABAb_receptor Ligand-binding domain of GABAb	100.0
cd06385		405	PBP1_NPR_A Ligand-binding domain of type A natriur	100.0
cd06370		404	PBP1_Speract_GC_like Ligand-binding domain of memb	100.0
cd06372		391	PBP1_GC_G_like Ligand-binding domain of membrane g	100.0
cd06363		410	PBP1_Taste_receptor Ligand-binding domain of the T	100.0
cd06373		396	PBP1_NPR_like Ligand binding domain of natriuretic	100.0
cd06394		333	PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleu	100.0
cd06371		382	PBP1_sensory_GC_DEF_like Ligand-binding domain of	100.0
KOG1056		878	consensus Glutamate-gated metabotropic ion channel	100.0
cd06384		399	PBP1_NPR_B Ligand-binding domain of type B natriur	100.0
cd06382		327	PBP1_iGluR_Kainate N-terminal leucine/isoleucine/v	100.0
cd06352		389	PBP1_NPR_GC_like Ligand-binding domain of membrane	100.0
PF01094		348	ANF_receptor: Receptor family ligand binding regio	100.0
cd06381		363	PBP1_iGluR_delta_like N-terminal leucine/isoleucin	100.0
cd06368		324	PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleu	100.0
PRK15404		369	leucine ABC transporter subunit substrate-binding	100.0
KOG1052		656	consensus Glutamate-gated kainate-type ion channel	100.0
cd06342		334	PBP1_ABC_LIVBP_like Type I periplasmic ligand-bind	100.0
cd06377		382	PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/	100.0
cd06378		362	PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/	100.0
cd06350		348	PBP1_GPCR_family_C_like Ligand-binding domain of m	100.0
cd06383		368	PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine	100.0
cd06346		312	PBP1_ABC_ligand_binding_like_11 Type I periplasmic	100.0
cd06345		344	PBP1_ABC_ligand_binding_like_10 Type I periplasmic	100.0
cd06338		345	PBP1_ABC_ligand_binding_like_5 Type I periplasmic	100.0
cd06348		344	PBP1_ABC_ligand_binding_like_13 Type I periplasmic	100.0
cd06340		347	PBP1_ABC_ligand_binding_like_6 Type I periplasmic	100.0
cd06355		348	PBP1_FmdD_like Periplasmic component (FmdD) of an	100.0
cd06344		332	PBP1_ABC_ligand_binding_like_9 Type I periplasmic	100.0
cd06351		328	PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleuc	100.0
cd06331		333	PBP1_AmiC_like Type I periplasmic components of am	100.0
cd06347		334	PBP1_ABC_ligand_binding_like_12 Type I periplasmic	100.0
COG0683		366	LivK ABC-type branched-chain amino acid transport	100.0
cd06329		342	PBP1_SBP_like_3 Periplasmic solute-binding domain	100.0
TIGR03669		374	urea_ABC_arch urea ABC transporter, substrate-bind	100.0
cd06343		362	PBP1_ABC_ligand_binding_like_8 Type I periplasmic	100.0
cd06349		340	PBP1_ABC_ligand_binding_like_14 Type I periplasmic	100.0
TIGR03407		359	urea_ABC_UrtA urea ABC transporter, urea binding p	100.0
cd06327		334	PBP1_SBP_like_1 Periplasmic solute-binding domain	100.0
cd06330		346	PBP1_Arsenic_SBP_like Periplasmic solute-binding d	100.0
cd06336		347	PBP1_ABC_ligand_binding_like_3 Type I periplasmic	100.0
cd06359		333	PBP1_Nba_like Type I periplasmic binding component	100.0
PF13458		343	Peripla_BP_6: Periplasmic binding protein; PDB: 4E	100.0
cd06357		360	PBP1_AmiC Periplasmic binding domain of amidase (A	100.0
cd06360		336	PBP1_alkylbenzenes_like Type I periplasmic binding	100.0
cd06328		333	PBP1_SBP_like_2 Periplasmic solute-binding domain	100.0
cd06335		347	PBP1_ABC_ligand_binding_like_2 Type I periplasmic	100.0
cd06356		334	PBP1_Amide_Urea_BP_like Periplasmic component (Fmd	99.98
cd06358		333	PBP1_NHase Type I periplasmic-binding protein of t	99.98
cd06334		351	PBP1_ABC_ligand_binding_like_1 Type I periplasmic	99.98
cd06332		333	PBP1_aromatic_compounds_like Type I periplasmic bi	99.97
KOG1055		865	consensus GABA-B ion channel receptor subunit GABA	99.97
PF13433		363	Peripla_BP_5: Periplasmic binding protein domain;	99.97
cd06337		357	PBP1_ABC_ligand_binding_like_4 Type I periplasmic	99.97
cd06326		336	PBP1_STKc_like Type I periplasmic binding domain o	99.96
cd06339		336	PBP1_YraM_LppC_lipoprotein_like Periplasmic bindin	99.96
cd06269		298	PBP1_glutamate_receptors_like Family C G-protein c	99.96
cd06369		380	PBP1_GC_C_enterotoxin_receptor Ligand-binding doma	99.96
TIGR03863		347	PQQ_ABC_bind ABC transporter, substrate binding pr	99.95
cd04509		299	PBP1_ABC_transporter_GCPR_C_like Family C of G-pro	99.95
cd06341		341	PBP1_ABC_ligand_binding_like_7 Type I periplasmic	99.95
cd06333		312	PBP1_ABC-type_HAAT_like Type I periplasmic binding	99.94
cd06268		298	PBP1_ABC_transporter_LIVBP_like Periplasmic bindin	99.93
cd01391		269	Periplasmic_Binding_Protein_Type_1 Type 1 periplas	99.62
PF04348		536	LppC: LppC putative lipoprotein; InterPro: IPR0074	99.41
PRK11917		259	bifunctional adhesin/ABC transporter aspartate/glu	99.32
PRK15010		260	ABC transporter lysine/arginine/ornithine binding	99.27
PRK15437		259	histidine ABC transporter substrate-binding protei	99.27
PRK10797		302	glutamate and aspartate transporter subunit; Provi	99.27
PRK09495		247	glnH glutamine ABC transporter periplasmic protein	99.25
PF00497		225	SBP_bac_3: Bacterial extracellular solute-binding	99.21
PRK15007		243	putative ABC transporter arginine-biding protein;	99.19
PF10613		65	Lig_chan-Glu_bd: Ligated ion channel L-glutamate-	99.18
TIGR02995		275	ectoine_ehuB ectoine/hydroxyectoine ABC transporte	99.14
PRK11260		266	cystine transporter subunit; Provisional	99.11
TIGR01096		250	3A0103s03R lysine-arginine-ornithine-binding perip	99.1
TIGR03870		246	ABC_MoxJ methanol oxidation system protein MoxJ. T	99.07
PRK10859		482	membrane-bound lytic transglycosylase F; Provision	98.96
TIGR02285		268	conserved hypothetical protein. Members of this fa	98.89
cd01537		264	PBP1_Repressors_Sugar_Binding_like Ligand-binding	98.86
PRK09959		1197	hybrid sensory histidine kinase in two-component r	98.82
PRK09959		1197	hybrid sensory histidine kinase in two-component r	98.8
COG0834		275	HisJ ABC-type amino acid transport/signal transduc	98.76
cd01536		267	PBP1_ABC_sugar_binding_like Periplasmic sugar-bind	98.76
cd06300		272	PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-bi	98.73
TIGR03871		232	ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associa	98.72
cd06267		264	PBP1_LacI_sugar_binding_like Ligand binding domain	98.68
COG3107		604	LppC Putative lipoprotein [General function predic	98.66
cd00134		218	PBPb Bacterial periplasmic transport systems use m	98.56
cd06320		275	PBP1_allose_binding Periplasmic allose-binding dom	98.56
cd06325		281	PBP1_ABC_uncharacterized_transporter Type I peripl	98.55
smart00062		219	PBPb Bacterial periplasmic substrate-binding prote	98.42
PRK10653		295	D-ribose transporter subunit RbsB; Provisional	98.38
COG2984		322	ABC-type uncharacterized transport system, peripla	98.35
cd06282		266	PBP1_GntR_like_2 Ligand-binding domain of putative	98.3
cd06323		268	PBP1_ribose_binding Periplasmic sugar-binding doma	98.29
cd06273		268	PBP1_GntR_like_1 This group includes the ligand-bi	98.19
cd06319		277	PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-b	98.19
PRK10936		343	TMAO reductase system periplasmic protein TorT; Pr	98.18
cd06312		271	PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-bi	98.17
cd06317		275	PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-bi	98.17
cd06310		273	PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-bi	98.15
cd06301		272	PBP1_rhizopine_binding_like Periplasmic binding pr	98.13
cd06305		273	PBP1_methylthioribose_binding_like Methylthioribos	98.08
PF13407		257	Peripla_BP_4: Periplasmic binding protein domain;	98.06
COG4623		473	Predicted soluble lytic transglycosylase fused to	98.05
PRK09701		311	D-allose transporter subunit; Provisional	98.04
cd01545		270	PBP1_SalR Ligand-binding domain of DNA transcripti	98.02
cd06309		273	PBP1_YtfQ_like Periplasmic binding domain of ABC-t	97.96
cd06298		268	PBP1_CcpA_like Ligand-binding domain of the catabo	97.91
cd06289		268	PBP1_MalI_like Ligand-binding domain of MalI, a tr	97.88
cd06284		267	PBP1_LacI_like_6 Ligand-binding domain of an uncha	97.87
cd06303		280	PBP1_LuxPQ_Quorum_Sensing Periplasmic binding prot	97.83
cd06322		267	PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-b	97.73
cd01539		303	PBP1_GGBP Periplasmic glucose/galactose-binding pr	97.7
cd06288		269	PBP1_sucrose_transcription_regulator Ligand-bindin	97.69
cd06275		269	PBP1_PurR Ligand-binding domain of purine represso	97.69
cd06308		270	PBP1_sensor_kinase_like Periplasmic binding domain	97.69
cd06311		274	PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-bi	97.69
PRK15395		330	methyl-galactoside ABC transporter galactose-bindi	97.68
cd01575		268	PBP1_GntR Ligand-binding domain of DNA transcripti	97.67
PF00532		279	Peripla_BP_1: Periplasmic binding proteins and sug	97.65
cd06306		268	PBP1_TorT-like TorT-like proteins, a periplasmic b	97.64
PRK10355		330	xylF D-xylose transporter subunit XylF; Provisiona	97.64
cd01540		289	PBP1_arabinose_binding Periplasmic L-arabinose-bin	97.63
COG1879		322	RbsB ABC-type sugar transport system, periplasmic	97.61
cd06271		268	PBP1_AglR_RafR_like Ligand-binding domain of DNA t	97.6
TIGR01481		329	ccpA catabolite control protein A. Catabolite cont	97.6
cd06321		271	PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-b	97.58
cd06283		267	PBP1_RegR_EndR_KdgR_like Ligand-binding domain of	97.58
cd01542		259	PBP1_TreR_like Ligand-binding domain of DNA transc	97.58
cd01574		264	PBP1_LacI Ligand-binding domain of DNA transcripti	97.57
cd06293		269	PBP1_LacI_like_11 Ligand-binding domain of unchara	97.56
cd06295		275	PBP1_CelR Ligand binding domain of a transcription	97.55
cd06270		268	PBP1_GalS_like Ligand binding domain of DNA transc	97.54
cd06316		294	PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-bi	97.53
cd06324		305	PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-b	97.53
cd06274		264	PBP1_FruR Ligand binding domain of DNA transcripti	97.52
cd06278		266	PBP1_LacI_like_2 Ligand-binding domain of uncharac	97.52
cd01538		288	PBP1_ABC_xylose_binding Periplasmic xylose-binding	97.5
cd06285		265	PBP1_LacI_like_7 Ligand-binding domain of uncharac	97.48
cd06281		269	PBP1_LacI_like_5 Ligand-binding domain of uncharac	97.44
PRK11303		328	DNA-binding transcriptional regulator FruR; Provis	97.44
cd06299		265	PBP1_LacI_like_13 Ligand-binding domain of DNA-bin	97.41
PRK10703		341	DNA-binding transcriptional repressor PurR; Provis	97.41
PRK10014		342	DNA-binding transcriptional repressor MalI; Provis	97.39
PRK15408		336	autoinducer 2-binding protein lsrB; Provisional	97.38
cd06296		270	PBP1_CatR_like Ligand-binding domain of a LacI-lik	97.38
cd06314		271	PBP1_tmGBP Periplasmic sugar-binding domain of The	97.37
COG1609		333	PurR Transcriptional regulators [Transcription]	97.34
cd06290		265	PBP1_LacI_like_9 Ligand-binding domain of uncharac	97.33
TIGR02955		295	TMAO_TorT TMAO reductase system periplasmic protei	97.32
PRK10423		327	transcriptional repressor RbsR; Provisional	97.31
cd06307		275	PBP1_uncharacterized_sugar_binding Periplasmic sug	97.29
cd01541		273	PBP1_AraR Ligand-binding domain of DNA transcripti	97.28
cd06318		282	PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-bi	97.28
cd06292		273	PBP1_LacI_like_10 Ligand-binding domain of unchara	97.27
cd06286		260	PBP1_CcpB_like Ligand-binding domain of a novel tr	97.26
cd06313		272	PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-bi	97.22
TIGR02417		327	fruct_sucro_rep D-fructose-responsive transcriptio	97.21
cd06294		270	PBP1_ycjW_transcription_regulator_like Ligand-bind	97.2
cd06302		298	PBP1_LsrB_Quorum_Sensing Periplasmic binding domai	97.2
cd06272		261	PBP1_hexuronate_repressor_like Ligand-binding doma	97.17
PF04392		294	ABC_sub_bind: ABC transporter substrate binding pr	97.16
cd06277		268	PBP1_LacI_like_1 Ligand-binding domain of uncharac	97.15
cd06280		263	PBP1_LacI_like_4 Ligand-binding domain of uncharac	97.14
cd06354		265	PBP1_BmpA_PnrA_like Periplasmic binding domain of	97.14
cd06291		265	PBP1_Qymf_like Ligand binding domain of the lacI-l	97.1
cd06297		269	PBP1_LacI_like_12 Ligand-binding domain of unchara	97.07
PRK09526		342	lacI lac repressor; Reviewed	97.06
PRK10727		343	DNA-binding transcriptional regulator GalR; Provis	97.04
cd06304		260	PBP1_BmpA_like Periplasmic binding component of a	96.99
cd01543		265	PBP1_XylR Ligand-binding domain of DNA transcripti	96.95
cd06279		283	PBP1_LacI_like_3 Ligand-binding domain of uncharac	96.93
PRK09492		315	treR trehalose repressor; Provisional	96.87
PRK14987		331	gluconate operon transcriptional regulator; Provis	96.79
PRK10401		346	DNA-binding transcriptional regulator GalS; Provis	96.78
PRK11041		309	DNA-binding transcriptional regulator CytR; Provis	96.54
PF00060		148	Lig_chan: Ligand-gated ion channel; InterPro: IPR0	96.51
TIGR02634		302	xylF D-xylose ABC transporter, substrate-binding p	96.46
TIGR01098		254	3A0109s03R phosphate/phosphite/phosphonate ABC tra	96.35
TIGR02405		311	trehalos_R_Ecol trehalose operon repressor, proteo	96.34
cd01544		270	PBP1_GalR Ligand-binding domain of DNA transcripti	96.22
TIGR02637		302	RhaS rhamnose ABC transporter, rhamnose-binding pr	95.94
cd06315		280	PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-bi	95.8
cd06353		258	PBP1_BmpA_Med_like Periplasmic binding domain of t	95.73
COG1744		345	Med Uncharacterized ABC-type transport system, per	94.83
TIGR02990		239	ectoine_eutA ectoine utilization protein EutA. Mem	94.42
PRK00489		287	hisG ATP phosphoribosyltransferase; Reviewed	94.38
cd06287		269	PBP1_LacI_like_8 Ligand-binding domain of uncharac	94.29
COG4213		341	XylF ABC-type xylose transport system, periplasmic	94.28
cd06276		247	PBP1_FucR_like Ligand-binding domain of a transcri	92.62
PRK10339		327	DNA-binding transcriptional repressor EbgR; Provis	92.28
cd06353		258	PBP1_BmpA_Med_like Periplasmic binding domain of t	90.8
PF12683		275	DUF3798: Protein of unknown function (DUF3798); In	90.36
PF13377		160	Peripla_BP_3: Periplasmic binding protein-like dom	88.96
TIGR00035		229	asp_race aspartate racemase.	88.61
TIGR03431		288	PhnD phosphonate ABC transporter, periplasmic phos	88.54
COG3473		238	Maleate cis-trans isomerase [Secondary metabolites	87.35
COG1454		377	EutG Alcohol dehydrogenase, class IV [Energy produ	87.26
PRK09860		383	putative alcohol dehydrogenase; Provisional	86.98
PF02608		306	Bmp: Basic membrane protein; InterPro: IPR003760 T	86.94
cd08192		370	Fe-ADH7 Iron-containing alcohol dehydrogenases-lik	85.37
PRK15454		395	ethanol dehydrogenase EutG; Provisional	84.86
cd08189		374	Fe-ADH5 Iron-containing alcohol dehydrogenases-lik	84.13
cd08193		376	HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyze	84.13
cd08190		414	HOT Hydroxyacid-oxoacid transhydrogenase (HOT) inv	83.78
PRK10624		382	L-1,2-propanediol oxidoreductase; Provisional	83.35
cd08551		370	Fe-ADH iron-containing alcohol dehydrogenases (Fe-	83.3
PRK10200		230	putative racemase; Provisional	83.14
cd08194		375	Fe-ADH6 Iron-containing alcohol dehydrogenases-lik	82.74
PF03808		172	Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp	81.49
TIGR02638		379	lactal_redase lactaldehyde reductase. This clade o	80.94

>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

Probab=100.00  E-value=3.5e-68  Score=519.40  Aligned_cols=556  Identities=17%  Similarity=0.302  Sum_probs=447.1

Q ss_pred             CCeeEEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCC-CcEEEEEEccC-CCChHHHHHHHHHhHhcCcEEEEcCCC
Q 006567           28 RPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILH-GTKLNITMQSS-NCSGFIGMVEALRFMETDIVAIIGPQC  105 (640)
Q Consensus        28 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~-g~~i~~~~~D~-~~~~~~a~~~a~~l~~~~v~aiiGp~~  105 (640)
                      -+.+|.||.+||.+.   .+...|+++|+...|.+..--+ -++|.+++... ..++...+.+.|+..++||.||+|-+.
T Consensus        23 f~~tiqigglF~~n~---~qe~~Afr~~~~~~~~~~~~~~~pf~L~~~~d~~e~a~Sf~~tnafCsq~s~Gv~Aifg~yd   99 (897)
T KOG1054|consen   23 FPNTIQIGGLFPRNT---DQEHSAFRFAVQLYNTNQNTTEKPFKLNPHVDNLESANSFAVTNAFCSQFSRGVYAIFGFYD   99 (897)
T ss_pred             CCCceeeccccCCcc---hHHHHHHHHHHHHhhcCCCCCCCCcccccccchhhhhhhHHHHHHHHHHHhhhHhhheeccc
Confidence            567899999999986   3568899999998887543211 14555544322 257788899999999999999999999


Q ss_pred             hHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHH
Q 006567          106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALN  185 (640)
Q Consensus       106 s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~  185 (640)
                      ......+..+|+..++|+|+++...    +...++.+++.|+-   ..++++++.||+|.++.++| |.+.|...++.+.
T Consensus       100 ~ks~~~ltsfc~aLh~~~vtpsfp~----~~~~~Fviq~RP~l---~~al~s~i~hy~W~~fv~ly-D~~rg~s~Lqai~  171 (897)
T KOG1054|consen  100 KKSVNTLTSFCGALHVSFVTPSFPT----DGDNQFVIQMRPAL---KGALLSLIDHYKWEKFVYLY-DTDRGLSILQAIM  171 (897)
T ss_pred             ccchhhhhhhccceeeeeecccCCc----CCCceEEEEeCchH---HHHHHHHHHhcccceEEEEE-cccchHHHHHHHH
Confidence            9999999999999999999875422    22346778888874   48999999999999999999 5557888899999


Q ss_pred             HHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCcccccc
Q 006567          186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYML  265 (640)
Q Consensus       186 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~~  265 (640)
                      +.+.++++.|.....-.++   +..+++.+++.+.....+.|++.|..+....++.++-+.+-...+|||++.+..-...
T Consensus       172 ~~a~~~nw~VtA~~v~~~~---d~~~yr~~f~~l~~r~e~rv~iDce~~~~~~il~q~i~~~k~~~~YHYvlaNl~f~d~  248 (897)
T KOG1054|consen  172 EAAAQNNWQVTAINVGNIN---DVKEYRMLFEMLDRRQENRVLIDCESERRNRILLQVIELGKHVKGYHYVLANLGFTDI  248 (897)
T ss_pred             HHHHhcCceEEEEEcCCcc---cHHHHHHHHHHHhccccceEEEEcccHHHHHHHHHHHHHhhhccceEEEEeeCCCchh
Confidence            9999999999876544433   4566999999999999999999999999999999998888888999999987543332


Q ss_pred             CCCCCChhhhhhccceEEEEEccCCchhHHHHHHHHhhhcC------CCCCCCchhhhhhhHHHHHHHHHHHHhhcCCcc
Q 006567          266 DSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTG------GSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKI  339 (640)
Q Consensus       266 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~------~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~  339 (640)
                      |.    +.+.....++.+++..+.+++..++|.++|+....      ++.++...++..|||+++.++|++.+.++..+.
T Consensus       249 dl----~~f~~g~aNitgFqivn~~~~~~~k~~~~~~~l~~~~~~g~~~~~~k~tsAlthDailV~~eaf~~~~~q~~~~  324 (897)
T KOG1054|consen  249 DL----ERFQHGGANITGFQIVNKNNPMVKKFIQRWKELDEREYPGASNDPIKYTSALTHDAILVMAEAFRSLRRQRIDI  324 (897)
T ss_pred             hH----HHHhcCCcceeEEEEecCCChHHHHHHHHHhhhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhhhch
Confidence            22    33445666789999999999999999999987542      335667789999999999999999998876544


Q ss_pred             cccCCccccccCCCCcccC--cccccCchHHHHHHHHhCcccccccceEEccCCCcccccEEEEEEecccEEEEEEEeCC
Q 006567          340 SFSNDSRLKTMEGGNLHLG--AMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNY  417 (640)
Q Consensus       340 ~~~~~~~~~~~~~~~~~c~--~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g~r~~~~~~I~~~~~~~~~~vG~w~~~  417 (640)
                      ..         .+....|.  +..+|.+|..+.++++++.++|+||+|+||..|+|.+++.+|+++..++-+++|.|++.
T Consensus       325 ~r---------RG~~GD~~an~~~p~~qG~~I~ralk~v~~eGLTGniqFd~~G~R~Nyt~~i~elk~~~~rk~~~W~e~  395 (897)
T KOG1054|consen  325 SR---------RGNAGDCLANPAVPWEQGIDIERALKQVQVEGLTGNIQFDKYGRRTNYTIDIVELKSNGSRKVGYWNEG  395 (897)
T ss_pred             hc---------cCCCccccCCCCCchhcchhHHHHHHheeecccccceeecccCccccceEEEEEeccCCcceeeeeccc
Confidence            32         22222343  35689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCCCcccccCCCCCCCccccceeEEeCCCCCCCCCceeecCCCCeEEEEeecCCCccceEEe---ecCCcceeeee
Q 006567          418 SGLSKEPPETLYAQPFNRSSTIQHLHSVIWPGETLSKPRGWVFPNNGKLLKIGVPNRASYREFVSK---VRGSDMFQGFC  494 (640)
Q Consensus       418 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~~~~~~~l~v~~~~~~~~~p~~~~---~~~~~~~~G~~  494 (640)
                      .|+.......             +...      .       ....+.++..|.+.-..||..+...   .+||++++|||
T Consensus       396 ~~fv~~~t~a-------------~~~~------d-------~~~~~n~tvvvttiL~spyvm~kkn~~~~egn~ryEGyC  449 (897)
T KOG1054|consen  396 EGFVPGSTVA-------------QSRN------D-------QASKENRTVVVTTILESPYVMLKKNHEQLEGNERYEGYC  449 (897)
T ss_pred             Cceeeccccc-------------cccc------c-------ccccccceEEEEEecCCchhHHHhhHHHhcCCcccceeH
Confidence            8865432210             0000      0       0001235555555533344333222   24789999999


Q ss_pred             HHHHHHHHHhCCCCccEEEEEcCCCC-----CCCC-HhhHHHHHHcCcccEEEeeeeeeccccceEEeCccccccceEEE
Q 006567          495 IDVFTAAVNLLPYAVPYQFVAFGDGH-----KNPS-YTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVV  568 (640)
Q Consensus       495 ~dl~~~i~~~l~~~~~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~il  568 (640)
                      |||+.+||+..+.+  |++..++|++     .+++ |+||+++|..|+||++++++|||.+|+++||||+|||.+|++|+
T Consensus       450 vdLa~~iAkhi~~~--Y~l~iv~dgkyGardaD~k~WnGMvGeLv~grAdiavApLTIt~~REeviDFSKPfMslGISIM  527 (897)
T KOG1054|consen  450 VDLAAEIAKHIGIK--YKLFIVGDGKYGARDADTKIWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIM  527 (897)
T ss_pred             HHHHHHHHHhcCce--EEEEEecCCcccccCCCcccccchhHHHhcCccceEEeeeeeehhhhhhhccccchhhcCeEEE
Confidence            99999999999998  7777776765     4445 99999999999999999999999999999999999999999999


Q ss_pred             EecCC-CCcCcceeccccchhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCc-------------cccchhhhHhHhhhh
Q 006567          569 VPFRK-LNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPP-------------KRQVITILWFSLSTL  634 (640)
Q Consensus       569 ~~~~~-~~~~~~~~l~pf~~~vw~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~w~~~~~~  634 (640)
                      +++|+ ..++.|+||+|+..+.|+||+++++.|++++|++.|++|+||.-..             ..+++||+||++|++
T Consensus       528 IKKPqKsk~gVFSFldPLa~eIWm~ivfaYiGVSvvlFLVSrFSPYEwh~Ee~~rg~~t~~~~~NeFgifNsLWFsLgAF  607 (897)
T KOG1054|consen  528 IKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFERGRFTPSDPPNEFGIFNSLWFSLGAF  607 (897)
T ss_pred             EeCcccCCCCeeeecchhHHHHHHHHHHHHhcceEEEEEEeccCchheeccccccCCCCCCCCCccchhhHHHHHHHHHH
Confidence            99999 8899999999999999999999999999999999999999985322             235899999999999


Q ss_pred             hhcc
Q 006567          635 FFAH  638 (640)
Q Consensus       635 ~~~~  638 (640)
                      |=++
T Consensus       608 MQQG  611 (897)
T KOG1054|consen  608 MQQG  611 (897)
T ss_pred             HhcC
Confidence            8654

>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family	Back alignment and domain information

>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor	Back alignment and domain information

>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor	Back alignment and domain information

>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor	Back alignment and domain information

>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor	Back alignment and domain information

>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR)	Back alignment and domain information

>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor	Back alignment and domain information

>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily	Back alignment and domain information

>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor	Back alignment and domain information

>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor	Back alignment and domain information

>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor	Back alignment and domain information

>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor	Back alignment and domain information

>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor	Back alignment and domain information

>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily	Back alignment and domain information

>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family	Back alignment and domain information

>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors	Back alignment and domain information

>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor	Back alignment and domain information

>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor	Back alignment and domain information

>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA)	Back alignment and domain information

>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor	Back alignment and domain information

>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases	Back alignment and domain information

>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G	Back alignment and domain information

>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor	Back alignment and domain information

>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family	Back alignment and domain information

>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor	Back alignment and domain information

>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues	Back alignment and domain information

>KOG1056 consensus Glutamate-gated metabotropic ion channel receptor subunit GRM2 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor	Back alignment and domain information

>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors	Back alignment and domain information

>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors	Back alignment and domain information

>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure []	Back alignment and domain information

>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2	Back alignment and domain information

>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors	Back alignment and domain information

>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional	Back alignment and domain information

>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine)	Back alignment and domain information

>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family	Back alignment and domain information

>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family	Back alignment and domain information

>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs)	Back alignment and domain information

>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors	Back alignment and domain information

>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF)	Back alignment and domain information

>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs)	Back alignment and domain information

>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF)	Back alignment and domain information

>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions	Back alignment and domain information

>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]	Back alignment and domain information

>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins	Back alignment and domain information

>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type	Back alignment and domain information

>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems	Back alignment and domain information

>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein	Back alignment and domain information

>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family	Back alignment and domain information

>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins	Back alignment and domain information

>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway	Back alignment and domain information

>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A	Back alignment and domain information

>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family	Back alignment and domain information

>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene	Back alignment and domain information

>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria	Back alignment and domain information

>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF)	Back alignment and domain information

>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides	Back alignment and domain information

>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes	Back alignment and domain information

>KOG1055 consensus GABA-B ion channel receptor subunit GABABR1 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A	Back alignment and domain information

>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins	Back alignment and domain information

>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen	Back alignment and domain information

>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors	Back alignment and domain information

>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C	Back alignment and domain information

>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system	Back alignment and domain information

>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems	Back alignment and domain information

>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions	Back alignment and domain information

>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids	Back alignment and domain information

>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily	Back alignment and domain information

>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily	Back alignment and domain information

>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown	Back alignment and domain information

>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed	Back alignment and domain information

>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional	Back alignment and domain information

>PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional	Back alignment and domain information

>PRK10797 glutamate and aspartate transporter subunit; Provisional	Back alignment and domain information

>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed	Back alignment and domain information

>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane	Back alignment and domain information

>PRK15007 putative ABC transporter arginine-biding protein; Provisional	Back alignment and domain information

>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ]	Back alignment and domain information

>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein	Back alignment and domain information

>PRK11260 cystine transporter subunit; Provisional	Back alignment and domain information

>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein	Back alignment and domain information

>TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ	Back alignment and domain information

>PRK10859 membrane-bound lytic transglycosylase F; Provisional	Back alignment and domain information

>TIGR02285 conserved hypothetical protein	Back alignment and domain information

>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems	Back alignment and domain information

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional	Back alignment and domain information

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional	Back alignment and domain information

>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]	Back alignment and domain information

>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily	Back alignment and domain information

>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily	Back alignment and domain information

>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein	Back alignment and domain information

>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily	Back alignment and domain information

>COG3107 LppC Putative lipoprotein [General function prediction only]	Back alignment and domain information

>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions	Back alignment and domain information

>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis	Back alignment and domain information

>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions	Back alignment and domain information

>smart00062 PBPb Bacterial periplasmic substrate-binding proteins	Back alignment and domain information

>PRK10653 D-ribose transporter subunit RbsB; Provisional	Back alignment and domain information

>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]	Back alignment and domain information

>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators	Back alignment and domain information

>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs	Back alignment and domain information

>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators	Back alignment and domain information

>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	Back alignment and domain information

>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional	Back alignment and domain information

>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	Back alignment and domain information

>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	Back alignment and domain information

>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	Back alignment and domain information

>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines	Back alignment and domain information

>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily	Back alignment and domain information

>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A	Back alignment and domain information

>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK09701 D-allose transporter subunit; Provisional	Back alignment and domain information

>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators	Back alignment and domain information

>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems	Back alignment and domain information

>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation	Back alignment and domain information

>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria	Back alignment and domain information

>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria	Back alignment and domain information

>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs	Back alignment and domain information

>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	Back alignment and domain information

>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species	Back alignment and domain information

>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors	Back alignment and domain information

>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli	Back alignment and domain information

>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems	Back alignment and domain information

>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	Back alignment and domain information

>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional	Back alignment and domain information

>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	Back alignment and domain information

>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators	Back alignment and domain information

>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria	Back alignment and domain information

>PRK10355 xylF D-xylose transporter subunit XylF; Provisional	Back alignment and domain information

>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily	Back alignment and domain information

>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators	Back alignment and domain information

>TIGR01481 ccpA catabolite control protein A	Back alignment and domain information

>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	Back alignment and domain information

>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR	Back alignment and domain information

>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators	Back alignment and domain information

>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators	Back alignment and domain information

>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	Back alignment and domain information

>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators	Back alignment and domain information

>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism	Back alignment and domain information

>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	Back alignment and domain information

>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	Back alignment and domain information

>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs	Back alignment and domain information

>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	Back alignment and domain information

>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily	Back alignment and domain information

>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	Back alignment and domain information

>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	Back alignment and domain information

>PRK11303 DNA-binding transcriptional regulator FruR; Provisional	Back alignment and domain information

>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia	Back alignment and domain information

>PRK10703 DNA-binding transcriptional repressor PurR; Provisional	Back alignment and domain information

>PRK10014 DNA-binding transcriptional repressor MalI; Provisional	Back alignment and domain information

>PRK15408 autoinducer 2-binding protein lsrB; Provisional	Back alignment and domain information

>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation	Back alignment and domain information

>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs	Back alignment and domain information

>COG1609 PurR Transcriptional regulators [Transcription]	Back alignment and domain information

>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	Back alignment and domain information

>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT	Back alignment and domain information

>PRK10423 transcriptional repressor RbsR; Provisional	Back alignment and domain information

>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems	Back alignment and domain information

>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators	Back alignment and domain information

>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	Back alignment and domain information

>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	Back alignment and domain information

>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species	Back alignment and domain information

>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	Back alignment and domain information

>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor	Back alignment and domain information

>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors	Back alignment and domain information

>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs	Back alignment and domain information

>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators	Back alignment and domain information

>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems	Back alignment and domain information

>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	Back alignment and domain information

>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	Back alignment and domain information

>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea	Back alignment and domain information

>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	Back alignment and domain information

>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs	Back alignment and domain information

>PRK09526 lacI lac repressor; Reviewed	Back alignment and domain information

>PRK10727 DNA-binding transcriptional regulator GalR; Provisional	Back alignment and domain information

>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria	Back alignment and domain information

>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR)	Back alignment and domain information

>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	Back alignment and domain information

>PRK09492 treR trehalose repressor; Provisional	Back alignment and domain information

>PRK14987 gluconate operon transcriptional regulator; Provisional	Back alignment and domain information

>PRK10401 DNA-binding transcriptional regulator GalS; Provisional	Back alignment and domain information

>PRK11041 DNA-binding transcriptional regulator CytR; Provisional	Back alignment and domain information

>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory	Back alignment and domain information

>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein	Back alignment and domain information

>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein	Back alignment and domain information

>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial	Back alignment and domain information

>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism	Back alignment and domain information

>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein	Back alignment and domain information

>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	Back alignment and domain information

>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea	Back alignment and domain information

>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]	Back alignment and domain information

>TIGR02990 ectoine_eutA ectoine utilization protein EutA	Back alignment and domain information

>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed	Back alignment and domain information

>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	Back alignment and domain information

>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability	Back alignment and domain information

>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional	Back alignment and domain information

>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea	Back alignment and domain information

>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria	Back alignment and domain information

>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A	Back alignment and domain information

>TIGR00035 asp_race aspartate racemase	Back alignment and domain information

>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein	Back alignment and domain information

>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]	Back alignment and domain information

>PRK09860 putative alcohol dehydrogenase; Provisional	Back alignment and domain information

>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria	Back alignment and domain information

>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway	Back alignment and domain information

>PRK15454 ethanol dehydrogenase EutG; Provisional	Back alignment and domain information

>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like	Back alignment and domain information

>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor	Back alignment and domain information

>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism	Back alignment and domain information

>PRK10624 L-1,2-propanediol oxidoreductase; Provisional	Back alignment and domain information

>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like	Back alignment and domain information

>PRK10200 putative racemase; Provisional	Back alignment and domain information

>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like	Back alignment and domain information

>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli	Back alignment and domain information

>TIGR02638 lactal_redase lactaldehyde reductase	Back alignment and domain information

Homologous Structure Templates