Citrus Sinensis ID: 006614
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 638 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LW84 | 642 | Pentatricopeptide repeat- | yes | no | 0.984 | 0.978 | 0.691 | 0.0 | |
| Q9M907 | 871 | Pentatricopeptide repeat- | no | no | 0.874 | 0.640 | 0.261 | 2e-66 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.793 | 0.824 | 0.295 | 2e-61 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.775 | 0.785 | 0.289 | 1e-58 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.775 | 0.783 | 0.279 | 1e-57 | |
| Q0WKV3 | 637 | Pentatricopeptide repeat- | no | no | 0.768 | 0.769 | 0.293 | 2e-57 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.910 | 0.634 | 0.258 | 6e-57 | |
| Q9ASZ8 | 621 | Pentatricopeptide repeat- | no | no | 0.789 | 0.811 | 0.288 | 2e-56 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.721 | 0.561 | 0.286 | 2e-56 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.835 | 0.706 | 0.281 | 3e-56 |
| >sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/632 (69%), Positives = 532/632 (84%), Gaps = 4/632 (0%)
Query: 6 SIASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPVSK-KFARKDTSARKLDE 64
S ++KR IS+L L QR KQTENEIV MF + P E P K K +RKD S R LDE
Sbjct: 8 SGSAKRSISSLPHLSQRFKQTENEIVQMFSV--PNHEESEKPQEKWKLSRKDPSVRMLDE 65
Query: 65 RFIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHN 124
RFIRI+KIFKWGPDAEKALEVLK++VDHRLV +L IDVEINVKIQFFKWAG+RRNF+H+
Sbjct: 66 RFIRIVKIFKWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQHD 125
Query: 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCV-MGPSVLSEIVNILGKAKMVNKALSIF 183
+TYM LIRCL+E R+ G M+++IQ++VR+T V + P+VLSE+V LG+AKMV+KALS+F
Sbjct: 126 CSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVF 185
Query: 184 YQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243
YQ K RKCKPT++TYNS+ILMLMQEG +EK+HE+Y EMCNEG+CFPDT+TYSALIS++ K
Sbjct: 186 YQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEK 245
Query: 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYT 303
LGR+ SAIRLFDEMK+N +QPT KIYTTL+ IYFK+G+VEKAL L +EMK GC+ TVYT
Sbjct: 246 LGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYT 305
Query: 304 YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363
YTELIKGLG+AGRV++AYG + +ML++G PD+V +NNL+N+LG+ GR+E+ +F++M
Sbjct: 306 YTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMG 365
Query: 364 ALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRV 423
+C P VV+YNTVIK+LFESKA SE S+WF+KMKA+ V PS FTYSILIDG+CKTNRV
Sbjct: 366 MWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRV 425
Query: 424 EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVM 483
EKA LLLEEM+EKGFPPCPAAYCSLIN GKAKRYEAANELF ELKE G S+RVYAVM
Sbjct: 426 EKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVM 485
Query: 484 IKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGC 543
IKHFGKCG+LS+AVDLFNEMK PDVY YNALMSGMV+AGMI++A SLLR+MEE+GC
Sbjct: 486 IKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGC 545
Query: 544 VPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAAR 603
DINSHNIILNG A++G P+RA+E+F ++HS IKPD V+YNT+LGC + AGMFEEAAR
Sbjct: 546 RADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAAR 605
Query: 604 LMKDMNAKGFEYDQITYSSILEAVGKVDEDRN 635
+M++M KGFEYD ITYSSIL+AVG VD +++
Sbjct: 606 MMREMKDKGFEYDAITYSSILDAVGNVDHEKD 637
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (647), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 157/600 (26%), Positives = 290/600 (48%), Gaps = 42/600 (7%)
Query: 69 ILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTTY 128
+L+ WGP AE L L + V VL ++N I++F+W RR H +Y
Sbjct: 42 VLETGPWGPSAENTLSALSFKPQPEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESY 101
Query: 129 MALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSV-------------------------- 162
+L+ + R + + + +M S GPSV
Sbjct: 102 NSLLLVMARCRNFDALDQILGEM--SVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMM 159
Query: 163 --------LSEIVNILGKAKMVNKA---LSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211
S ++G VN + L++F Q++ +PT + + ++I +EG
Sbjct: 160 RKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRV 219
Query: 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTT 271
+ L +EM + D V Y+ I +FGK+G+ A + F E++ NGL+P YT+
Sbjct: 220 DSALSLLDEM-KSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTS 278
Query: 272 LVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331
++ + K +++A+ + + ++ Y Y +I G G AG+ ++AY L +G
Sbjct: 279 MIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKG 338
Query: 332 CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEA 391
P ++ N ++ L + G++++ALK+F +M+ PN+ TYN +I L + A
Sbjct: 339 SIPSVIAYNCILTCLRKMGKVDEALKVFEEMKK-DAAPNLSTYNILIDMLCRA-GKLDTA 396
Query: 392 SAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLING 451
+ M+ G+ P+ T +I++D CK+ ++++A + EEM+ K P +CSLI+G
Sbjct: 397 FELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDG 456
Query: 452 YGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD 511
GK R + A +++ ++ + +++ VY +IK+F GR D ++ +M C PD
Sbjct: 457 LGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPD 516
Query: 512 VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571
+ N M M +AG + ++ ++ VPD S++I+++GL K+G E+F
Sbjct: 517 LQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFY 576
Query: 572 KMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVD 631
M+ D +YN ++ + G +A +L+++M KGFE +TY S+++ + K+D
Sbjct: 577 SMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKID 636
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 237 bits (605), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 152/514 (29%), Positives = 258/514 (50%), Gaps = 8/514 (1%)
Query: 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSV--LSEIVNILGKAKMVNKAL 180
HN TY +I CL + + M++ GPS+ L+ ++N +++A+
Sbjct: 98 HNLYTYNIMINCLCRRSQLSFALAILGKMMKLG--YGPSIVTLNSLLNGFCHGNRISEAV 155
Query: 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240
++ Q+ +P T+ +++ L Q + L M +G C PD VTY A+I+
Sbjct: 156 ALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG-CQPDLVTYGAVING 214
Query: 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT 300
K G A+ L ++M++ ++ IY+T++ K V+ AL L EM KG
Sbjct: 215 LCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPD 274
Query: 301 VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360
V+TY+ LI L GR DA L +ML+ P++V N+LI+ + G+L +A KLF+
Sbjct: 275 VFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFD 334
Query: 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420
+M PN+VTYN++I F EA F M + LP TY+ LI+GFCK
Sbjct: 335 EMIQRSIDPNIVTYNSLING-FCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKA 393
Query: 421 NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVY 480
+V L +M +G Y +LI+G+ +A + A +F ++ + Y
Sbjct: 394 KKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTY 453
Query: 481 AVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEE 540
++ K G+L A+ +F ++K + +PD+YTYN + GM +AG ++D + L +
Sbjct: 454 NTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSL 513
Query: 541 DGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEE 600
G PD+ ++N +++G K G + A +F KM+ PD+ +YNT++ R G
Sbjct: 514 KGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAA 573
Query: 601 AARLMKDMNAKGFEYDQITYSSILEAV--GKVDE 632
+A L+K+M + F D TY + + + G++D+
Sbjct: 574 SAELIKEMRSCRFAGDASTYGLVTDMLHDGRLDK 607
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 228 bits (581), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 144/497 (28%), Positives = 246/497 (49%), Gaps = 2/497 (0%)
Query: 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSI 182
HN TY LI C + + + M++ LS ++N +K +++A+++
Sbjct: 114 HNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVAL 173
Query: 183 FYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242
Q+ +P T+N++I L + L + M +G C PD VTY +++
Sbjct: 174 VDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG-CQPDLVTYGVVVNGLC 232
Query: 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY 302
K G A L ++M++ L+P IY T++ K ++ AL L +EM+ KG V
Sbjct: 233 KRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVV 292
Query: 303 TYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKM 362
TY+ LI L GR DA L +M++ PD+ + LI+ + G+L +A KL+++M
Sbjct: 293 TYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM 352
Query: 363 EALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNR 422
P++VTY+++I F EA FE M + P TY+ LI GFCK R
Sbjct: 353 VKRSIDPSIVTYSSLING-FCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKR 411
Query: 423 VEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAV 482
VE+ + EM ++G Y LI G +A + A E+F E+ + Y
Sbjct: 412 VEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 471
Query: 483 MIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDG 542
++ K G+L A+ +F +++ + +P +YTYN ++ GM +AG ++D + L + G
Sbjct: 472 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 531
Query: 543 CVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAA 602
PD+ ++N +++G + G + A +F +M+ P++ YNT++ R G E +A
Sbjct: 532 VKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 591
Query: 603 RLMKDMNAKGFEYDQIT 619
L+K+M + GF D T
Sbjct: 592 ELIKEMRSCGFAGDAST 608
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (572), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/497 (27%), Positives = 247/497 (49%), Gaps = 2/497 (0%)
Query: 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSI 182
H+ TY I C + + + M++ LS ++N +K ++ A+++
Sbjct: 116 HDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVAL 175
Query: 183 FYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242
Q+ KP T+ ++I L + L ++M G C PD VTY +++
Sbjct: 176 VDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG-CQPDLVTYGTVVNGLC 234
Query: 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY 302
K G A+ L +M++ ++ IY T++ K ++ AL L EM KG V+
Sbjct: 235 KRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVF 294
Query: 303 TYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKM 362
TY+ LI L GR DA L +M++ P++V + LI+ + G+L +A KL+++M
Sbjct: 295 TYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 354
Query: 363 EALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNR 422
P++ TY+++I F EA FE M + P+ TYS LI GFCK R
Sbjct: 355 IKRSIDPDIFTYSSLING-FCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKR 413
Query: 423 VEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAV 482
VE+ L EM ++G Y +LI+G+ +A+ + A +F ++ + Y +
Sbjct: 414 VEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNI 473
Query: 483 MIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDG 542
++ K G+L+ A+ +F +++ +PD+YTYN ++ GM +AG ++D + L + G
Sbjct: 474 LLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKG 533
Query: 543 CVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAA 602
P++ ++N +++G + G + A + KM+ P++ +YNT++ R G E +A
Sbjct: 534 VSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASA 593
Query: 603 RLMKDMNAKGFEYDQIT 619
L+K+M + GF D T
Sbjct: 594 ELIKEMRSCGFAGDAST 610
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 147/501 (29%), Positives = 251/501 (50%), Gaps = 11/501 (2%)
Query: 135 LDETRMIGVMWKSIQ-DMVRSTC--------VMGPSVLSEIVNILGKAKMVNKALSIFYQ 185
+D +R+ + K+ Q D+V + C LS ++N + + + A S +
Sbjct: 89 IDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGK 148
Query: 186 IKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG 245
I +P T++++I L EG + EL + M G+ PD +T + L++ G
Sbjct: 149 IIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH-KPDLITINTLVNGLCLSG 207
Query: 246 RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT 305
++ A+ L D+M E G QP A Y ++++ K G+ A+ L+++M+ + L Y+
Sbjct: 208 KEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYS 267
Query: 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEAL 365
+I GL + G +++A+ LF M +G +I+ N LI AGR +D KL M
Sbjct: 268 IIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKR 327
Query: 366 QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEK 425
+ PNVVT++ +I S F + EA ++M G+ P TY+ LIDGFCK N ++K
Sbjct: 328 KINPNVVTFSVLIDS-FVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDK 386
Query: 426 AHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIK 485
A+ +++ M KG P + LINGY KA R + ELF ++ + Y +I+
Sbjct: 387 ANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQ 446
Query: 486 HFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP 545
F + G+L+ A +LF EM + P++ TY L+ G+ G + A + ++E+
Sbjct: 447 GFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMEL 506
Query: 546 DINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLM 605
DI +NII++G+ + A ++F + +KP +YN ++G L + G EA L
Sbjct: 507 DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLF 566
Query: 606 KDMNAKGFEYDQITYSSILEA 626
+ M G D TY+ ++ A
Sbjct: 567 RKMEEDGHAPDGWTYNILIRA 587
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 222 bits (566), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 167/646 (25%), Positives = 290/646 (44%), Gaps = 65/646 (10%)
Query: 47 PVSKKFARKDTSARKLDERFIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEIN 106
P+ + +++ + + R + IL W +L+ + + V + ++D++
Sbjct: 47 PLLRNLPEEESDSMSVPHRLLSILSKPNW--HKSPSLKSMVSAISPSHVSSLFSLDLDPK 104
Query: 107 VKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVL--- 163
+ F W + ++H+ +Y +L+ L +GV++K M++S +G ++
Sbjct: 105 TALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLD 164
Query: 164 ----------------------SEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201
+ ++N L + +V++ ++ ++ K P TYN M
Sbjct: 165 LCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKM 224
Query: 202 ILMLMQEG-------YYEKIHE----------------------------LYNEMCNEGN 226
+ + G Y KI E ++NEM +G
Sbjct: 225 VNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKG- 283
Query: 227 CFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKAL 286
C + V Y+ LI R A+ LF +MK++ PT + YT L+ +AL
Sbjct: 284 CRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEAL 343
Query: 287 GLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVL 346
LV+EM+ G ++TYT LI L + E A L ML++G P+++ N LIN
Sbjct: 344 NLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGY 403
Query: 347 GRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPS 406
+ G +EDA+ + ME+ + PN TYN +IK K+ +A KM VLP
Sbjct: 404 CKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGY--CKSNVHKAMGVLNKMLERKVLPD 461
Query: 407 PFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFL 466
TY+ LIDG C++ + A+ LL M ++G P Y S+I+ K+KR E A +LF
Sbjct: 462 VVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFD 521
Query: 467 ELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAG 526
L++ + +Y +I + K G++ +A + +M C P+ T+NAL+ G+ G
Sbjct: 522 SLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADG 581
Query: 527 MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYN 586
+ +A L +M + G P +++ I+++ L K G A F +M S KPDA +Y
Sbjct: 582 KLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYT 641
Query: 587 TILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDE 632
T + R G +A +M M G D TYSS+++ G + +
Sbjct: 642 TFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQ 687
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (562), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 149/516 (28%), Positives = 256/516 (49%), Gaps = 12/516 (2%)
Query: 133 RCLDETRMIGVMWKSIQ-DMVRSTC--------VMGPSVLSEIVNILGKAKMVNKALSIF 183
R +D +R+ V+ ++ Q D+V C LS ++N + + ++ A S
Sbjct: 71 RLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAM 130
Query: 184 YQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243
+I +P T++++I L EG + EL + M G+ P +T +AL++
Sbjct: 131 GKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH-KPTLITLNALVNGLCL 189
Query: 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYT 303
G+ A+ L D M E G QP Y ++ + K G+ A+ L+++M+ + L
Sbjct: 190 NGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVK 249
Query: 304 YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363
Y+ +I GL + G +++A+ LF M +G K DI++ LI AGR +D KL M
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309
Query: 364 ALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRV 423
+ P+VV ++ +I F + EA ++M G+ P TY+ LIDGFCK N++
Sbjct: 310 KRKITPDVVAFSALIDC-FVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQL 368
Query: 424 EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVM 483
+KA+ +L+ M KG P + LINGY KA + ELF ++ + Y +
Sbjct: 369 DKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTL 428
Query: 484 IKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGC 543
I+ F + G+L A +LF EM R +PD+ +Y L+ G+ G + A + ++E+
Sbjct: 429 IQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKM 488
Query: 544 VPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAAR 603
DI +NII++G+ + A ++F + +KPD +YN ++G L + G EA
Sbjct: 489 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADL 548
Query: 604 LMKDMNAKGFEYDQITYSSILEA-VGKVDEDRNPTL 638
L + M G + TY+ ++ A +G+ D ++ L
Sbjct: 549 LFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKL 584
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 155/541 (28%), Positives = 256/541 (47%), Gaps = 81/541 (14%)
Query: 166 IVNILGK-AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE 224
I+N+ GK NK S+ ++KS P A TYN++I + +++ +++ EM
Sbjct: 249 ILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAA 308
Query: 225 GNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284
G + D VTY+AL+ +GK R A+++ +EM NG P+ Y +L+S Y + G +++
Sbjct: 309 GFSY-DKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDE 367
Query: 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLIN 344
A+ L +M KG V+TYT L+ G RAG+VE A +F M GCKP+I N I
Sbjct: 368 AMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIK 427
Query: 345 VLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVL 404
+ G G+ + +K+F+++ P++VT+NT++ ++F SE S F++MK G +
Sbjct: 428 MYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLL-AVFGQNGMDSEVSGVFKEMKRAGFV 486
Query: 405 PSPFTYSILIDGFCKTNRVEKA-----------------------------------HLL 429
P T++ LI + + E+A +
Sbjct: 487 PERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKV 546
Query: 430 LEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHF-- 487
L EME+ P YCSL++ Y K + L E+ Y G R AV++K
Sbjct: 547 LAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEV--YSGVIEPR--AVLLKTLVL 602
Query: 488 --GKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP 545
KC L +A F+E+K+ PD+ T N+++S R M+ A +L M+E G P
Sbjct: 603 VCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTP 662
Query: 546 -----------------------------------DINSHNIILNGLAKSGGPKRAMEIF 570
DI S+N ++ ++ + A IF
Sbjct: 663 SMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIF 722
Query: 571 TKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKV 630
++M++S I PD ++YNT +G + MFEEA +++ M G +Q TY+SI++ K+
Sbjct: 723 SEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKL 782
Query: 631 D 631
+
Sbjct: 783 N 783
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (560), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 156/554 (28%), Positives = 263/554 (47%), Gaps = 21/554 (3%)
Query: 69 ILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEIN----VKIQFFK---WAGRRRNF 121
IL + W D ++ D +++LN+ V+ N V+I K W
Sbjct: 137 ILSVVDWMIDE------FGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWG-----I 185
Query: 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181
+ + +T+ LI+ L + ++DM V + ++ + ++ AL
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALR 245
Query: 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241
I Q+ C + + N ++ +EG E EM N+ FPD T++ L++
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGL 305
Query: 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV 301
K G AI + D M + G P Y +++S KLGEV++A+ ++ +M + C+
Sbjct: 306 CKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNT 365
Query: 302 YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361
TY LI L + +VE+A L + +G PD+ N+LI L A++LF +
Sbjct: 366 VTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEE 425
Query: 362 MEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421
M + C+P+ TYN +I SL SK EA ++M+ +G S TY+ LIDGFCK N
Sbjct: 426 MRSKGCEPDEFTYNMLIDSLC-SKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKAN 484
Query: 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYA 481
+ +A + +EME G Y +LI+G K++R E A +L ++ Y
Sbjct: 485 KTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYN 544
Query: 482 VMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541
++ HF + G + A D+ M C+PD+ TY L+SG+ +AG ++ A LLR ++
Sbjct: 545 SLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMK 604
Query: 542 GCVPDINSHNIILNGLAKSGGPKRAMEIFTKM-QHSEIKPDAVSYNTIL-GCLSRAGMFE 599
G +++N ++ GL + A+ +F +M + +E PDAVSY + G + G
Sbjct: 605 GINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIR 664
Query: 600 EAARLMKDMNAKGF 613
EA + ++ KGF
Sbjct: 665 EAVDFLVELLEKGF 678
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 638 | ||||||
| 225442663 | 725 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.877 | 0.798 | 0.0 | |
| 297743291 | 638 | unnamed protein product [Vitis vinifera] | 0.993 | 0.993 | 0.8 | 0.0 | |
| 449467657 | 637 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.998 | 0.767 | 0.0 | |
| 449484944 | 637 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.996 | 0.998 | 0.764 | 0.0 | |
| 255574572 | 642 | pentatricopeptide repeat-containing prot | 0.990 | 0.984 | 0.769 | 0.0 | |
| 357454999 | 639 | Beta-D-galactosidase [Medicago truncatul | 0.993 | 0.992 | 0.751 | 0.0 | |
| 224058846 | 609 | predicted protein [Populus trichocarpa] | 0.948 | 0.993 | 0.784 | 0.0 | |
| 356547408 | 631 | PREDICTED: pentatricopeptide repeat-cont | 0.974 | 0.985 | 0.741 | 0.0 | |
| 297830178 | 642 | pentatricopeptide repeat-containing prot | 0.984 | 0.978 | 0.704 | 0.0 | |
| 15233259 | 642 | pentatricopeptide repeat-containing prot | 0.984 | 0.978 | 0.691 | 0.0 |
| >gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16010-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1077 bits (2785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/636 (79%), Positives = 572/636 (89%)
Query: 2 MVLGSIASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPVSKKFARKDTSARK 61
M+ GSI +R ISTL L QRIKQTE+EIV MF+LS P DE++ P+++KF R + S R
Sbjct: 1 MISGSIPLRRMISTLPHLSQRIKQTESEIVQMFKLSSPKDEIQRLPMNQKFPRNNPSVRT 60
Query: 62 LDERFIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNF 121
LDERFIRILKIFKWGPDAEKALEVLK++VDHRLV +VL IDVEI+VKIQFFKWAG+RRNF
Sbjct: 61 LDERFIRILKIFKWGPDAEKALEVLKLKVDHRLVREVLKIDVEIHVKIQFFKWAGKRRNF 120
Query: 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181
EH+STTYMALI CLDE M+G MWK+IQ+MVRSTCV+GP+ LSEIV +LGKAKMVNKALS
Sbjct: 121 EHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALS 180
Query: 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241
IFYQIK RKCKPT+NTYNSMILMLMQEG++EK+HELYNEMCNEG+C PDTVTYSALI+AF
Sbjct: 181 IFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAF 240
Query: 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV 301
GKLGRD SAI LFDEMKENGL PTAKIYTT++ IYFKLG VEKALGLVQEMK KGCALTV
Sbjct: 241 GKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTV 300
Query: 302 YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361
YTYTELIKG+G+AG+VE+AY +FMNMLKEGCKPD+VLINNLIN+LG+AGRL DA+KLF +
Sbjct: 301 YTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEE 360
Query: 362 MEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421
ME+LQC PNVVTYNTVIK+LFESKA ASEA W+EKMK NGV+PS FTYSILIDGFCKTN
Sbjct: 361 MESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTN 420
Query: 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYA 481
RVEKA LLLEEM+EKGF PCPAAYCSLIN GKAKRYEAANELF EL+E CG SSARVYA
Sbjct: 421 RVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYA 480
Query: 482 VMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541
VMIKH GKCGRLS+AVDLFNEMKKL C PDVY YNALMSGMVR GM D+A+SLLR MEE+
Sbjct: 481 VMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEEN 540
Query: 542 GCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEA 601
GC PD+NSHNIILNG A++GGPK A+E+FT+M++S+IKPD VSYNT+LGCLSRAGMFEEA
Sbjct: 541 GCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEA 600
Query: 602 ARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRNPT 637
A+LMK+MN+KGFEYD ITYSSILEAVGK+DED P
Sbjct: 601 AKLMKEMNSKGFEYDLITYSSILEAVGKIDEDHTPA 636
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1075 bits (2780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/635 (80%), Positives = 572/635 (90%)
Query: 2 MVLGSIASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPVSKKFARKDTSARK 61
M+ GSI +R ISTL L QRIKQTE+EIV MF+LS P DE++ P+++KF R + S R
Sbjct: 1 MISGSIPLRRMISTLPHLSQRIKQTESEIVQMFKLSSPKDEIQRLPMNQKFPRNNPSVRT 60
Query: 62 LDERFIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNF 121
LDERFIRILKIFKWGPDAEKALEVLK++VDHRLV +VL IDVEI+VKIQFFKWAG+RRNF
Sbjct: 61 LDERFIRILKIFKWGPDAEKALEVLKLKVDHRLVREVLKIDVEIHVKIQFFKWAGKRRNF 120
Query: 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181
EH+STTYMALI CLDE M+G MWK+IQ+MVRSTCV+GP+ LSEIV +LGKAKMVNKALS
Sbjct: 121 EHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALS 180
Query: 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241
IFYQIK RKCKPT+NTYNSMILMLMQEG++EK+HELYNEMCNEG+C PDTVTYSALI+AF
Sbjct: 181 IFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAF 240
Query: 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV 301
GKLGRD SAI LFDEMKENGL PTAKIYTT++ IYFKLG VEKALGLVQEMK KGCALTV
Sbjct: 241 GKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTV 300
Query: 302 YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361
YTYTELIKG+G+AG+VE+AY +FMNMLKEGCKPD+VLINNLIN+LG+AGRL DA+KLF +
Sbjct: 301 YTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEE 360
Query: 362 MEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421
ME+LQC PNVVTYNTVIK+LFESKA ASEA W+EKMK NGV+PS FTYSILIDGFCKTN
Sbjct: 361 MESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTN 420
Query: 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYA 481
RVEKA LLLEEM+EKGF PCPAAYCSLIN GKAKRYEAANELF EL+E CG SSARVYA
Sbjct: 421 RVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYA 480
Query: 482 VMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541
VMIKH GKCGRLS+AVDLFNEMKKL C PDVY YNALMSGMVR GM D+A+SLLR MEE+
Sbjct: 481 VMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEEN 540
Query: 542 GCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEA 601
GC PD+NSHNIILNG A++GGPK A+E+FT+M++S+IKPD VSYNT+LGCLSRAGMFEEA
Sbjct: 541 GCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEA 600
Query: 602 ARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRNP 636
A+LMK+MN+KGFEYD ITYSSILEAVGK+DED P
Sbjct: 601 AKLMKEMNSKGFEYDLITYSSILEAVGKIDEDHTP 635
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16010-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1031 bits (2665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/636 (76%), Positives = 557/636 (87%)
Query: 2 MVLGSIASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPVSKKFARKDTSARK 61
M S+ASKR IS+L L RIKQTENEIV MF++S P E NF ++K R+D S R
Sbjct: 1 MNFTSLASKRSISSLHPLSTRIKQTENEIVQMFRVSTPSPEASNFSFNRKVLRRDPSVRT 60
Query: 62 LDERFIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNF 121
LDERFIRILKIFKWG DAEKA+EVLK++VDHRLVHQVL+IDVEI KIQFFKWAG+R++F
Sbjct: 61 LDERFIRILKIFKWGSDAEKAIEVLKLKVDHRLVHQVLDIDVEIRAKIQFFKWAGKRQHF 120
Query: 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181
+H+STTYMALIRCL+E+ ++ MW++IQDM+RS C +GP+ SEI+ ILGKAKMVNKALS
Sbjct: 121 QHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALS 180
Query: 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241
+FYQIK RKC PTA YN++ILMLM EG++EKIHELYNE+C+EGNC PDT+TYSALISAF
Sbjct: 181 VFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAF 240
Query: 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV 301
GKL R A RLFDEMKENGL PT KIYTT++++YFKL +VE AL LV+EMKGKGCA TV
Sbjct: 241 GKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTV 300
Query: 302 YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361
+TYTELIKGLG+ GRV+DAY LF NMLK+GCKPD+VLINNLIN+LGRAGRLEDALKLF K
Sbjct: 301 FTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGK 360
Query: 362 MEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421
M++LQC PNVVTYNTVIK++FESKAPASEA+ WFEKMKANG+ PS FTY+ILIDGFCKTN
Sbjct: 361 MDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTN 420
Query: 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYA 481
RVEKA LLLEEM+EKGFPPCPAAYCSLI+ G+AKRYEAANELF ELKE CG SSARVYA
Sbjct: 421 RVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYA 480
Query: 482 VMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541
VMIKHFG CGRLSDAVDLF EMKKL C PDVYTYNALMSGM+RAGMID+A+SL+R M E+
Sbjct: 481 VMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMREN 540
Query: 542 GCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEA 601
GC PDI SHNIILNGLAK+GGPKRA+E+FTKM+ SEI PDAVSYNTIL CLSRAGMFE A
Sbjct: 541 GCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMA 600
Query: 602 ARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRNPT 637
A+LM++M KGFEYD ITYSSILEAVGKVDED +PT
Sbjct: 601 AKLMREMKLKGFEYDSITYSSILEAVGKVDEDCSPT 636
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g16010-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1026 bits (2653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/636 (76%), Positives = 556/636 (87%)
Query: 2 MVLGSIASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPVSKKFARKDTSARK 61
M S+ASKR IS+L L RIKQTENEIV MF++S P E NF ++K R+D S R
Sbjct: 1 MNFTSLASKRSISSLHPLSTRIKQTENEIVQMFRVSTPSPEASNFSFNRKVLRRDPSVRT 60
Query: 62 LDERFIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNF 121
LDERFIRILKIFKWG DAEKA+EVLK++VDHRLVHQVL+IDVEI KIQFFKWAG+R++F
Sbjct: 61 LDERFIRILKIFKWGSDAEKAIEVLKLKVDHRLVHQVLDIDVEIRAKIQFFKWAGKRQHF 120
Query: 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181
+H+STTYMALIRCL+E+ ++ MW++IQDM+RS C +GP+ SEI+ ILGKAKMVNKALS
Sbjct: 121 QHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALS 180
Query: 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241
+FYQIK RKC PTA YN++ILMLM EG++EKIHELYNE+C+EGNC PDT+TYSALISAF
Sbjct: 181 VFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAF 240
Query: 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV 301
GKL R A RLFDEMKENGL PT KIYTT++++YFKL +VE AL LV+EMKGKGCA TV
Sbjct: 241 GKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTV 300
Query: 302 YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361
+TYTELIKGLG+ GRV+DAY LF NMLK+GCKPD+VLINNLIN+LGRAGRLEDALKLF K
Sbjct: 301 FTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGK 360
Query: 362 MEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421
M++LQC PNVVTYNTVIK++FESKAPASEA+ WFEKMKANG+ PS FTY+ILIDGFCKTN
Sbjct: 361 MDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTN 420
Query: 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYA 481
RVEKA LLLEEM+EKGFPPCPAAYCSLI+ G+AKRYEAANELF ELKE CG SSARVYA
Sbjct: 421 RVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYA 480
Query: 482 VMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541
VMIKHFG CGRLSDAVDLF E +KL C PDVYTYNALMSGM+RAGMID+A+SL+R M E+
Sbjct: 481 VMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMREN 540
Query: 542 GCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEA 601
GC PDI SHNIILNGLAK+GGPKRA+E+FTKM+ SEI PDAVSYNTIL CLSRAGMFE A
Sbjct: 541 GCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMA 600
Query: 602 ARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRNPT 637
A+LM++M KGFEYD ITYSSILEAVGKVDED +PT
Sbjct: 601 AKLMREMKLKGFEYDSITYSSILEAVGKVDEDCSPT 636
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1021 bits (2639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/633 (76%), Positives = 557/633 (87%), Gaps = 1/633 (0%)
Query: 6 SIASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPVSKKFARKDTSARKLDER 65
SI KR IST L +RIKQT+NEIV+MF++ ++M+N P+++KF+ KDTS RKLDER
Sbjct: 8 SIVLKRSISTSPHLYERIKQTDNEIVNMFRVPSMNNKMQNLPMNRKFSGKDTSTRKLDER 67
Query: 66 FIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHNS 125
FIRILKIFKWGPDAEKALEVLK++VDHRLVH+VL IDVEINVKIQFFKWAG+RRNFEH+S
Sbjct: 68 FIRILKIFKWGPDAEKALEVLKLKVDHRLVHEVLKIDVEINVKIQFFKWAGKRRNFEHDS 127
Query: 126 TTYMALIRCLDETRMIGVMWKSIQDMVRS-TCVMGPSVLSEIVNILGKAKMVNKALSIFY 184
+++MALI LDE G MWK+IQDMVRS TCV+ LSEIV +LGKAKMVNKALS+FY
Sbjct: 128 SSFMALIHSLDEAGFYGEMWKTIQDMVRSSTCVISSVYLSEIVKLLGKAKMVNKALSVFY 187
Query: 185 QIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244
QIK RKCKP A TYNSMILML QEG+ EK+HE+YNEMCN+GNCFPDTVTYSALISAFGKL
Sbjct: 188 QIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALISAFGKL 247
Query: 245 GRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTY 304
G SAIRLFDEMKENGL PTAKIYTTL+ IYFKL +VEKAL +++EMK KGC LTV+TY
Sbjct: 248 GHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVFTY 307
Query: 305 TELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364
TE IKGLG+AGRV+DAY +F++M+K+GCKPD+VLIN+LIN+LG+ GRLE LKLF KME+
Sbjct: 308 TEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMES 367
Query: 365 LQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVE 424
QCKPNVVTYNTVIK+LFE KAPASEA++WFEKMK G+ PS FTYSILIDGFCKTNR+E
Sbjct: 368 WQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIE 427
Query: 425 KAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMI 484
KA LLLEEM+EKGFPPCPAAYCSLIN GK KRYEAANELFLELKE CG SSARVYAVMI
Sbjct: 428 KALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKENCGHSSARVYAVMI 487
Query: 485 KHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCV 544
KHFGKCGRLS+AVDLFNEM+KL KPDVY YNALMSGMVRAGMID+A SLLR M+E+GC
Sbjct: 488 KHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCS 547
Query: 545 PDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARL 604
PD+NSHNIILNGLA++G P RA+E+F KM+ S IKPDAVSYNT+LGCLS AG+FEEAA+L
Sbjct: 548 PDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLFEEAAKL 607
Query: 605 MKDMNAKGFEYDQITYSSILEAVGKVDEDRNPT 637
M++MN KGFEY+ ITY+SILEAVGKVDEDR P
Sbjct: 608 MREMNLKGFEYNNITYTSILEAVGKVDEDRAPA 640
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula] gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula] gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1015 bits (2624), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/635 (75%), Positives = 559/635 (88%), Gaps = 1/635 (0%)
Query: 2 MVLGSIASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPV-SKKFARKDTSAR 60
M+ G + ++R IST + QR+KQTENEIV MF+L +E P+ ++ RKD +AR
Sbjct: 1 MLPGFVTARRFISTSTPFTQRLKQTENEIVKMFRLPDSQEENHYVPMEGRRVLRKDPNAR 60
Query: 61 KLDERFIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRN 120
KLDERFIRILKIFKWGPDAEKALEVLK+++D RLV +VL IDVE++VKIQFFKWAG++RN
Sbjct: 61 KLDERFIRILKIFKWGPDAEKALEVLKLKLDIRLVREVLKIDVEVHVKIQFFKWAGKKRN 120
Query: 121 FEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKAL 180
FEH+STTYMALIRCLDE R++G +W++IQDMV+S C +GPS LSEIV ILG+ KMVNKAL
Sbjct: 121 FEHDSTTYMALIRCLDENRLVGELWRTIQDMVKSPCAIGPSELSEIVKILGRVKMVNKAL 180
Query: 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240
SIFYQ+K RKC+PTA TYNS+ILMLMQEG++EK+HELYNEMC+EG+CFPDTVTYSALISA
Sbjct: 181 SIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISA 240
Query: 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT 300
FGKL RD SA+RLFDEMKENGLQPTAKIYTTL+ IYFKLG+VE+AL LV EM+ + C T
Sbjct: 241 FGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPT 300
Query: 301 VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360
VYTYTELI+GLG++GRVEDAYG++ NMLK+GCKPD+VL+NNLIN+LGR+ RL++A++LF
Sbjct: 301 VYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFE 360
Query: 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420
+M L C PNVVTYNT+IKSLFE KAP SEAS+W E+MK +GV+PS FTYSILIDGFCKT
Sbjct: 361 EMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKT 420
Query: 421 NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVY 480
NRVEKA LLLEEM+EKGFPPCPAAYCSLIN GKAKRYEAANELF ELKE CG SS RVY
Sbjct: 421 NRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVY 480
Query: 481 AVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEE 540
AVMIKHFGKCGR ++A+ LFNEMKKL C PDVY YNAL++GMVRA M+D+A+SL R MEE
Sbjct: 481 AVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEE 540
Query: 541 DGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEE 600
+GC PDINSHNIILNGLA++GGPKRAME+F KM+ S IKPDAVSYNT+LGCLSRAG+FEE
Sbjct: 541 NGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEE 600
Query: 601 AARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRN 635
A +LMK+MN+KGFEYD ITYSSILEAVGKVDEDRN
Sbjct: 601 ATKLMKEMNSKGFEYDLITYSSILEAVGKVDEDRN 635
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa] gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 997 bits (2577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/609 (78%), Positives = 545/609 (89%), Gaps = 4/609 (0%)
Query: 33 MFQL-SGPIDEMRNFPV-SKKFARKDTSARKLDERFIRILKIFKWGPDAEKALEVLKMRV 90
MF++ S DEM+N P + KF+R+D S R LDERFIRILKIFKWGPDAEKALEVLK++V
Sbjct: 1 MFKVPSSKDDEMQNLPTQNSKFSRRDPSVRTLDERFIRILKIFKWGPDAEKALEVLKLKV 60
Query: 91 DHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQD 150
DHRLV +VL IDVEINVKIQFFKWAG+RRNFEH+ TTYM LIRCLD+ + G MWK IQ+
Sbjct: 61 DHRLVREVLKIDVEINVKIQFFKWAGKRRNFEHDLTTYMPLIRCLDDCGLFGEMWKMIQE 120
Query: 151 MVRS-TCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEG 209
MVRS TCV+GP+ LSE+V ILGKAKMVNKALS+FYQIKSRKCKPTA+TYNSMILMLMQEG
Sbjct: 121 MVRSPTCVIGPADLSEVVKILGKAKMVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEG 180
Query: 210 YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIY 269
++EKIHELY+EMCNEG+CFPDT+TYS L+SAF KLGRD AIRLFDEMK NGL PTAKIY
Sbjct: 181 HHEKIHELYHEMCNEGDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIY 240
Query: 270 TTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329
TTL++IYFK G+ EKALGLVQEMK KGCA TV+TYTELIKGLG++GRVEDAY +F+NMLK
Sbjct: 241 TTLLAIYFKSGD-EKALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLK 299
Query: 330 EGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPAS 389
+GCKPD+VLINNLIN+ G+AGRLEDALKLF++M +L+C PNVVTYNTVIK+LFESKAPAS
Sbjct: 300 DGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPAS 359
Query: 390 EASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLI 449
EA++WFEKMKANGV PS FTYSILIDGFCKTNRVEKA LLLEEM+EKGFPPCPAAYCSLI
Sbjct: 360 EAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLI 419
Query: 450 NGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCK 509
N GKAKRYEAANELFLELKE CG SSAR+YAVMIK+ GKCGR S+AVDLFNEMKK+ C
Sbjct: 420 NALGKAKRYEAANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCN 479
Query: 510 PDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEI 569
PDVY YNALMSG+VRAGMI++A+S LR MEE+GC PD+NSHNIILNGLA++G P++A E+
Sbjct: 480 PDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEM 539
Query: 570 FTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGK 629
F KM+ S IKPDAVSYNTILG LSR+GMFEEAA+LM++M ++GFEYD ITYSSILEAVGK
Sbjct: 540 FMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSILEAVGK 599
Query: 630 VDEDRNPTL 638
VDED P
Sbjct: 600 VDEDDEPNF 608
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16010-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 988 bits (2553), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/624 (74%), Positives = 548/624 (87%), Gaps = 2/624 (0%)
Query: 11 RCISTLSCLCQRIKQTENEIVHMFQL--SGPIDEMRNFPVSKKFARKDTSARKLDERFIR 68
R IST CQR+KQTENEI MF+L S + + N R+D +R LDERFIR
Sbjct: 2 RRISTFPPFCQRLKQTENEIAQMFRLPNSHEGNHLNNSMKGGHVLRRDPYSRTLDERFIR 61
Query: 69 ILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTTY 128
ILKIFKWGPDAEKALEVLK++VD RLV ++L IDVE++VKIQFFKWAG+RRNFEH+STTY
Sbjct: 62 ILKIFKWGPDAEKALEVLKLKVDPRLVREILKIDVEVSVKIQFFKWAGKRRNFEHDSTTY 121
Query: 129 MALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKS 188
MALIRCLDE RM G +WK+IQDMV+ +C M P+ LSEIV ILGKAKMVN+ALS+FYQ+K
Sbjct: 122 MALIRCLDEHRMFGEVWKTIQDMVKGSCAMAPAELSEIVRILGKAKMVNRALSVFYQVKG 181
Query: 189 RKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI 248
RKC+PTA+TYNS+ILMLMQEG++EK+HELYNEMC+E +CFPDTVTYSALISAF KL RD
Sbjct: 182 RKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALISAFAKLNRDD 241
Query: 249 SAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELI 308
SAIRLFDEMKENGLQPTAKIYTTL+ IYFK+G+VE+ALGLV+EM+ + C LTV+TYTELI
Sbjct: 242 SAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTELI 301
Query: 309 KGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCK 368
+GLG++GRVEDAY + NMLK+GCKPD+VL+NNLIN+LGR+ L DA+KLF++M+ L C
Sbjct: 302 RGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCA 361
Query: 369 PNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHL 428
PNVVTYNT+IKSLFE+KAP SEAS+WFE+MK +G++PS FTYSILIDG+CKTNRVEKA L
Sbjct: 362 PNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALL 421
Query: 429 LLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFG 488
LLEEM+EKGFPPCPAAYCSLIN G AKRY+ ANELF ELKE CGCSSARVYAVMIKHFG
Sbjct: 422 LLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVMIKHFG 481
Query: 489 KCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDIN 548
KCGRL++A++LFNEMKKL C PDVY YNALM+GMVRA +D+A+SL R MEE+GC PDIN
Sbjct: 482 KCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDIN 541
Query: 549 SHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDM 608
SHNIILNGLA++GGPK A+E+FTKM++S IKPD VS+NTILGCLSRAG+FEEAA+LM++M
Sbjct: 542 SHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAAKLMQEM 601
Query: 609 NAKGFEYDQITYSSILEAVGKVDE 632
++KGF+YD ITYSSILEAVGKVD+
Sbjct: 602 SSKGFQYDLITYSSILEAVGKVDD 625
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 934 bits (2415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/632 (70%), Positives = 533/632 (84%), Gaps = 4/632 (0%)
Query: 6 SIASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPVSK-KFARKDTSARKLDE 64
SI +KR +STL L QR KQTENEIV MF + P E P K K +RKD S R LDE
Sbjct: 8 SILAKRSVSTLPYLSQRFKQTENEIVQMFSI--PNHEESEKPQEKWKLSRKDPSVRMLDE 65
Query: 65 RFIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHN 124
RFIRI+KIFKWGPDAEKALEVLK++VDHRLV +L IDVEINVKIQFFKWAG+RRNF+H+
Sbjct: 66 RFIRIVKIFKWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQHD 125
Query: 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCV-MGPSVLSEIVNILGKAKMVNKALSIF 183
+TYMALIRCL+E R+ G M+++IQ++VR+T V +GP VLSE+V LG+AKMV+KALS+F
Sbjct: 126 CSTYMALIRCLEEARLYGEMYRTIQEVVRNTYVSVGPVVLSELVKALGRAKMVSKALSVF 185
Query: 184 YQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243
YQ K RKCKPT++TYNS+ILMLMQEG +EK+HE+Y EMCNEG+CFPDT+TYSALIS++ K
Sbjct: 186 YQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEK 245
Query: 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYT 303
LGR+ SAIRLFDEMK+N +QPT KIYTTL+ IYFK+G+VEKAL L +EMK GC+ TVYT
Sbjct: 246 LGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYT 305
Query: 304 YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363
YTELIKGLG+AGRVE+AY L+ NML +G PD+V +NNL+N+LG+ GRLE+ +FN+M
Sbjct: 306 YTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNVFNEMG 365
Query: 364 ALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRV 423
+C P VV+YNTVIK+LFESKAP SE S+WF+KMKA+GV PS FTYSILIDG+CKTNRV
Sbjct: 366 TWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRV 425
Query: 424 EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVM 483
EKA LLLEEM+EKGFPPCPAAYCSLIN GKAKRYEAANELF ELKE G S+RVYAVM
Sbjct: 426 EKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVM 485
Query: 484 IKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGC 543
IKHFGKCG+LS+AVDLFNEMK PDVY YNALMSGMV+AGM+++A SLLR+MEE+GC
Sbjct: 486 IKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGC 545
Query: 544 VPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAAR 603
DINSHNIILNG A++G P+RA+E+F M+H IKPD V+YNT+LGC + AGMFEEAAR
Sbjct: 546 TADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCFAHAGMFEEAAR 605
Query: 604 LMKDMNAKGFEYDQITYSSILEAVGKVDEDRN 635
LM++M KGFEYD ITYSSIL+AVG +D +++
Sbjct: 606 LMREMKDKGFEYDAITYSSILDAVGNMDHEKD 637
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010 gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana] gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/632 (69%), Positives = 532/632 (84%), Gaps = 4/632 (0%)
Query: 6 SIASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPVSK-KFARKDTSARKLDE 64
S ++KR IS+L L QR KQTENEIV MF + P E P K K +RKD S R LDE
Sbjct: 8 SGSAKRSISSLPHLSQRFKQTENEIVQMFSV--PNHEESEKPQEKWKLSRKDPSVRMLDE 65
Query: 65 RFIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHN 124
RFIRI+KIFKWGPDAEKALEVLK++VDHRLV +L IDVEINVKIQFFKWAG+RRNF+H+
Sbjct: 66 RFIRIVKIFKWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQHD 125
Query: 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCV-MGPSVLSEIVNILGKAKMVNKALSIF 183
+TYM LIRCL+E R+ G M+++IQ++VR+T V + P+VLSE+V LG+AKMV+KALS+F
Sbjct: 126 CSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVF 185
Query: 184 YQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243
YQ K RKCKPT++TYNS+ILMLMQEG +EK+HE+Y EMCNEG+CFPDT+TYSALIS++ K
Sbjct: 186 YQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEK 245
Query: 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYT 303
LGR+ SAIRLFDEMK+N +QPT KIYTTL+ IYFK+G+VEKAL L +EMK GC+ TVYT
Sbjct: 246 LGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYT 305
Query: 304 YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363
YTELIKGLG+AGRV++AYG + +ML++G PD+V +NNL+N+LG+ GR+E+ +F++M
Sbjct: 306 YTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMG 365
Query: 364 ALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRV 423
+C P VV+YNTVIK+LFESKA SE S+WF+KMKA+ V PS FTYSILIDG+CKTNRV
Sbjct: 366 MWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRV 425
Query: 424 EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVM 483
EKA LLLEEM+EKGFPPCPAAYCSLIN GKAKRYEAANELF ELKE G S+RVYAVM
Sbjct: 426 EKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVM 485
Query: 484 IKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGC 543
IKHFGKCG+LS+AVDLFNEMK PDVY YNALMSGMV+AGMI++A SLLR+MEE+GC
Sbjct: 486 IKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGC 545
Query: 544 VPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAAR 603
DINSHNIILNG A++G P+RA+E+F ++HS IKPD V+YNT+LGC + AGMFEEAAR
Sbjct: 546 RADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAAR 605
Query: 604 LMKDMNAKGFEYDQITYSSILEAVGKVDEDRN 635
+M++M KGFEYD ITYSSIL+AVG VD +++
Sbjct: 606 MMREMKDKGFEYDAITYSSILDAVGNVDHEKD 637
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 638 | ||||||
| TAIR|locus:2093472 | 642 | AT3G16010 [Arabidopsis thalian | 0.981 | 0.975 | 0.692 | 2.9e-238 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.793 | 0.824 | 0.295 | 1.5e-60 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.728 | 0.533 | 0.310 | 2.4e-60 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.904 | 0.915 | 0.271 | 5.1e-58 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.786 | 0.788 | 0.293 | 9.6e-57 | |
| TAIR|locus:2195047 | 621 | AT1G12620 [Arabidopsis thalian | 0.789 | 0.811 | 0.290 | 1.1e-55 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.811 | 0.687 | 0.280 | 2.9e-55 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.731 | 0.725 | 0.298 | 4.8e-55 | |
| TAIR|locus:2099458 | 659 | AT3G48810 "AT3G48810" [Arabido | 0.811 | 0.786 | 0.273 | 1.6e-54 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.783 | 0.807 | 0.280 | 2.1e-54 |
| TAIR|locus:2093472 AT3G16010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2297 (813.6 bits), Expect = 2.9e-238, P = 2.9e-238
Identities = 436/630 (69%), Positives = 531/630 (84%)
Query: 8 ASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPVSK-KFARKDTSARKLDERF 66
++KR IS+L L QR KQTENEIV MF + P E P K K +RKD S R LDERF
Sbjct: 10 SAKRSISSLPHLSQRFKQTENEIVQMFSV--PNHEESEKPQEKWKLSRKDPSVRMLDERF 67
Query: 67 IRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHNST 126
IRI+KIFKWGPDAEKALEVLK++VDHRLV +L IDVEINVKIQFFKWAG+RRNF+H+ +
Sbjct: 68 IRIVKIFKWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQHDCS 127
Query: 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCV-MGPSVLSEIVNILGKAKMVNKALSIFYQ 185
TYM LIRCL+E R+ G M+++IQ++VR+T V + P+VLSE+V LG+AKMV+KALS+FYQ
Sbjct: 128 TYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQ 187
Query: 186 IKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG 245
K RKCKPT++TYNS+ILMLMQEG +EK+HE+Y EMCNEG+CFPDT+TYSALIS++ KLG
Sbjct: 188 AKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLG 247
Query: 246 RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT 305
R+ SAIRLFDEMK+N +QPT KIYTTL+ IYFK+G+VEKAL L +EMK GC+ TVYTYT
Sbjct: 248 RNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYT 307
Query: 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEAL 365
ELIKGLG+AGRV++AYG + +ML++G PD+V +NNL+N+LG+ GR+E+ +F++M
Sbjct: 308 ELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMW 367
Query: 366 QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEK 425
+C P VV+YNTVIK+LFESKA SE S+WF+KMKA+ V PS FTYSILIDG+CKTNRVEK
Sbjct: 368 RCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEK 427
Query: 426 AHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIK 485
A LLLEEM+EKGFPPCPAAYCSLIN GKAKRYEAANELF ELKE G S+RVYAVMIK
Sbjct: 428 ALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIK 487
Query: 486 HFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP 545
HFGKCG+LS+AVDLFNEMK PDVY YNALMSGMV+AGMI++A SLLR+MEE+GC
Sbjct: 488 HFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRA 547
Query: 546 DINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLM 605
DINSHNIILNG A++G P+RA+E+F ++HS IKPD V+YNT+LGC + AGMFEEAAR+M
Sbjct: 548 DINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMM 607
Query: 606 KDMNAKGFEYDQITYSSILEAVGKVDEDRN 635
++M KGFEYD ITYSSIL+AVG VD +++
Sbjct: 608 REMKDKGFEYDAITYSSILDAVGNVDHEKD 637
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 152/514 (29%), Positives = 258/514 (50%)
Query: 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSV--LSEIVNILGKAKMVNKAL 180
HN TY +I CL + + M++ GPS+ L+ ++N +++A+
Sbjct: 98 HNLYTYNIMINCLCRRSQLSFALAILGKMMKLG--YGPSIVTLNSLLNGFCHGNRISEAV 155
Query: 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240
++ Q+ +P T+ +++ L Q + L M +G C PD VTY A+I+
Sbjct: 156 ALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG-CQPDLVTYGAVING 214
Query: 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT 300
K G A+ L ++M++ ++ IY+T++ K V+ AL L EM KG
Sbjct: 215 LCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPD 274
Query: 301 VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360
V+TY+ LI L GR DA L +ML+ P++V N+LI+ + G+L +A KLF+
Sbjct: 275 VFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFD 334
Query: 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420
+M PN+VTYN++I F EA F M + LP TY+ LI+GFCK
Sbjct: 335 EMIQRSIDPNIVTYNSLING-FCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKA 393
Query: 421 NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVY 480
+V L +M +G Y +LI+G+ +A + A +F ++ + Y
Sbjct: 394 KKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTY 453
Query: 481 AVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEE 540
++ K G+L A+ +F ++K + +PD+YTYN + GM +AG ++D + L +
Sbjct: 454 NTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSL 513
Query: 541 DGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEE 600
G PD+ ++N +++G K G + A +F KM+ PD+ +YNT++ R G
Sbjct: 514 KGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAA 573
Query: 601 AARLMKDMNAKGFEYDQITYSSILEAV--GKVDE 632
+A L+K+M + F D TY + + + G++D+
Sbjct: 574 SAELIKEMRSCRFAGDASTYGLVTDMLHDGRLDK 607
|
|
| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
Identities = 146/470 (31%), Positives = 247/470 (52%)
Query: 160 PSVLSE--IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHEL 217
PSV++ I+ L K V++AL +F ++K + P +TYN +I ML + G + EL
Sbjct: 341 PSVIAYNCILTCLRKMGKVDEALKVFEEMK-KDAAPNLSTYNILIDMLCRAGKLDTAFEL 399
Query: 218 YNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYF 277
+ M G FP+ T + ++ K + A +F+EM P + +L+
Sbjct: 400 RDSMQKAG-LFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLG 458
Query: 278 KLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIV 337
K+G V+ A + ++M C YT LIK GR ED + ++ +M+ + C PD+
Sbjct: 459 KVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQ 518
Query: 338 LINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEK 397
L+N ++ + +AG E +F +++A + P+ +Y+ +I L ++ A+E F
Sbjct: 519 LLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGF-ANETYELFYS 577
Query: 398 MKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKR 457
MK G + Y+I+IDGFCK +V KA+ LLEEM+ KGF P Y S+I+G K R
Sbjct: 578 MKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDR 637
Query: 458 YEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNA 517
+ A LF E K + +Y+ +I FGK GR+ +A + E+ + P++YT+N+
Sbjct: 638 LDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNS 697
Query: 518 LMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSE 577
L+ +V+A I++A + M+E C P+ ++ I++NGL K +A + +MQ
Sbjct: 698 LLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQG 757
Query: 578 IKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627
+KP +SY T++ L++AG EA L A G D Y++++E +
Sbjct: 758 MKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGL 807
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 160/590 (27%), Positives = 282/590 (47%)
Query: 45 NFPVSKKFARKDTSARKLDERFIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVE 104
++ +K +R S KLD+ ++ K P +E K+ + ++ DV
Sbjct: 45 SYDYREKLSRNGLSELKLDDAVALFGEMVKSRP-FPSIIEFSKLL---SAIAKMNKFDVV 100
Query: 105 INVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLS 164
I++ Q + HN TY LI C + + + M++ LS
Sbjct: 101 ISLGEQM-----QNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLS 155
Query: 165 EIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE 224
++N +K +++A+++ Q+ +P T+N++I L + L + M +
Sbjct: 156 SLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAK 215
Query: 225 GNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284
G C PD VTY +++ K G A L ++M++ L+P IY T++ K ++
Sbjct: 216 G-CQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDD 274
Query: 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLIN 344
AL L +EM+ KG V TY+ LI L GR DA L +M++ PD+ + LI+
Sbjct: 275 ALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALID 334
Query: 345 VLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVL 404
+ G+L +A KL+++M P++VTY+++I F EA FE M +
Sbjct: 335 AFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLING-FCMHDRLDEAKQMFEFMVSKHCF 393
Query: 405 PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANEL 464
P TY+ LI GFCK RVE+ + EM ++G Y LI G +A + A E+
Sbjct: 394 PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 453
Query: 465 FLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR 524
F E+ + Y ++ K G+L A+ +F +++ + +P +YTYN ++ GM +
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 513
Query: 525 AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVS 584
AG ++D + L + G PD+ ++N +++G + G + A +F +M+ P++
Sbjct: 514 AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGC 573
Query: 585 YNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV--GKVDE 632
YNT++ R G E +A L+K+M + GF D T + + G++D+
Sbjct: 574 YNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLDK 623
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 151/514 (29%), Positives = 260/514 (50%)
Query: 135 LDETRMIGVMWKSIQ-DMVRSTC----VMGPS----VLSEIVNILGKAKMVNKALSIFYQ 185
+D +R+ + K+ Q D+V + C + G + LS ++N + + + A S +
Sbjct: 89 IDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGK 148
Query: 186 IKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG 245
I +P T++++I L EG + EL + M G+ PD +T + L++ G
Sbjct: 149 IIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHK-PDLITINTLVNGLCLSG 207
Query: 246 RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT 305
++ A+ L D+M E G QP A Y ++++ K G+ A+ L+++M+ + L Y+
Sbjct: 208 KEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYS 267
Query: 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEAL 365
+I GL + G +++A+ LF M +G +I+ N LI AGR +D KL M
Sbjct: 268 IIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKR 327
Query: 366 QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEK 425
+ PNVVT++ +I S F + EA ++M G+ P TY+ LIDGFCK N ++K
Sbjct: 328 KINPNVVTFSVLIDS-FVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDK 386
Query: 426 AHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIK 485
A+ +++ M KG P + LINGY KA R + ELF ++ + Y +I+
Sbjct: 387 ANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQ 446
Query: 486 HFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP 545
F + G+L+ A +LF EM + P++ TY L+ G+ G + A + ++E+
Sbjct: 447 GFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMEL 506
Query: 546 DINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLM 605
DI +NII++G+ + A ++F + +KP +YN ++G L + G EA L
Sbjct: 507 DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLF 566
Query: 606 KDMNAKGFEYDQITYSSILEA-VGKVDEDRNPTL 638
+ M G D TY+ ++ A +G D ++ L
Sbjct: 567 RKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKL 600
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| TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 150/516 (29%), Positives = 259/516 (50%)
Query: 133 RCLDETRMIGVMWKSIQ-DMVRSTC----VMGPS----VLSEIVNILGKAKMVNKALSIF 183
R +D +R+ V+ ++ Q D+V C + G + LS ++N + + ++ A S
Sbjct: 71 RLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAM 130
Query: 184 YQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243
+I +P T++++I L EG + EL + M G+ P +T +AL++
Sbjct: 131 GKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHK-PTLITLNALVNGLCL 189
Query: 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYT 303
G+ A+ L D M E G QP Y ++ + K G+ A+ L+++M+ + L
Sbjct: 190 NGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVK 249
Query: 304 YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363
Y+ +I GL + G +++A+ LF M +G K DI++ LI AGR +D KL M
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309
Query: 364 ALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRV 423
+ P+VV ++ +I F + EA ++M G+ P TY+ LIDGFCK N++
Sbjct: 310 KRKITPDVVAFSALI-DCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQL 368
Query: 424 EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVM 483
+KA+ +L+ M KG P + LINGY KA + ELF ++ + Y +
Sbjct: 369 DKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTL 428
Query: 484 IKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGC 543
I+ F + G+L A +LF EM R +PD+ +Y L+ G+ G + A + ++E+
Sbjct: 429 IQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKM 488
Query: 544 VPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAAR 603
DI +NII++G+ + A ++F + +KPD +YN ++G L + G EA
Sbjct: 489 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADL 548
Query: 604 LMKDMNAKGFEYDQITYSSILEA-VGKVDEDRNPTL 638
L + M G + TY+ ++ A +G+ D ++ L
Sbjct: 549 LFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKL 584
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 147/524 (28%), Positives = 259/524 (49%)
Query: 109 IQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVN 168
++ F A ++ NF Y ++ L + M K ++DM S C MG S ++
Sbjct: 67 LRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIE 126
Query: 169 ILGKAKMVNKALSIF-YQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNC 227
+ ++ ++ LS+ + I KP + YN M+ +L+ +G K+ E+ + +
Sbjct: 127 SYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLV-DGNSLKLVEISHAKMSVWGI 185
Query: 228 FPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287
PD T++ LI A + + AI + ++M GL P K +TT++ Y + G+++ AL
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALR 245
Query: 288 LVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNML-KEGCKPDIVLINNLINVL 346
+ ++M GC+ + + ++ G + GRVEDA M ++G PD N L+N L
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGL 305
Query: 347 GRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPS 406
+AG ++ A+++ + M P+V TYN+VI L + EA ++M P+
Sbjct: 306 CKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKL-GEVKEAVEVLDQMITRDCSPN 364
Query: 407 PFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFL 466
TY+ LI CK N+VE+A L + KG P + SLI G + + A ELF
Sbjct: 365 TVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFE 424
Query: 467 ELKEYCGCSSAR-VYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRA 525
E++ GC Y ++I G+L +A+++ +M+ C V TYN L+ G +A
Sbjct: 425 EMRSK-GCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKA 483
Query: 526 GMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSY 585
+A + ME G + ++N +++GL KS + A ++ +M KPD +Y
Sbjct: 484 NKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTY 543
Query: 586 NTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGK 629
N++L R G ++AA +++ M + G E D +TY +++ + K
Sbjct: 544 NSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCK 587
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| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 141/472 (29%), Positives = 241/472 (51%)
Query: 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMC 222
LS ++N + + ++ A S +I +P +N+++ L E + EL + M
Sbjct: 126 LSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMV 185
Query: 223 NEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEV 282
G+ P +T + L++ G+ A+ L D M E G QP Y ++++ K G+
Sbjct: 186 EMGHK-PTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQT 244
Query: 283 EKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNL 342
A+ L+++M+ + L Y+ +I GL + G +++A+ LF M +G K DI+ N L
Sbjct: 245 ALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTL 304
Query: 343 INVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG 402
I AGR +D KL M + PNVVT++ +I S F + EA ++M G
Sbjct: 305 IGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDS-FVKEGKLREADQLLKEMMQRG 363
Query: 403 VLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAAN 462
+ P+ TY+ LIDGFCK NR+E+A +++ M KG P + LINGY KA R +
Sbjct: 364 IAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGL 423
Query: 463 ELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGM 522
ELF E+ ++ Y +++ F + G+L A LF EM R +PD+ +Y L+ G+
Sbjct: 424 ELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGL 483
Query: 523 VRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDA 582
G ++ A + ++E+ DI + II++G+ + A ++F + +K DA
Sbjct: 484 CDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDA 543
Query: 583 VSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEA-VGKVDED 633
+YN ++ L R +A L + M +G D++TY+ ++ A +G D+D
Sbjct: 544 RAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLG--DDD 593
|
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| TAIR|locus:2099458 AT3G48810 "AT3G48810" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 144/527 (27%), Positives = 254/527 (48%)
Query: 105 INVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLS 164
+ + + FFK F+H T+ +IR L + + +Q M +
Sbjct: 56 VPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFI 115
Query: 165 EIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE 224
++++ + + +A+ +FY+IK C P+ YN ++ L+ E + I+ +Y +M +
Sbjct: 116 SVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRD 175
Query: 225 GNCF-PDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283
G F P+ TY+ L+ A K + A +L EM G P A YTT++S ++G V+
Sbjct: 176 G--FEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVK 233
Query: 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLI 343
+ L + + V Y LI GL + + A+ L M+++G P+++ + LI
Sbjct: 234 EGRELAERFEP-----VVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLI 288
Query: 344 NVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGV 403
NVL +G++E A +M C PN+ T ++++K F W + ++ G+
Sbjct: 289 NVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGL 348
Query: 404 LPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANE 463
P+ Y+ L+ GFC + KA + MEE G P Y SLING+ K + A
Sbjct: 349 QPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVY 408
Query: 464 LFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV 523
++ ++ C + VY M++ + + +A L M K C P V T+NA + G+
Sbjct: 409 IWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLC 468
Query: 524 RAGMIDDAYSLLRRMEEDG-CVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDA 582
AG +D A + R+ME+ C P+I ++N +L+GLAK+ + A + ++ ++ +
Sbjct: 469 DAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSS 528
Query: 583 VSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGK 629
+YNT+L AG+ A +L+ M G D+IT + I+ A K
Sbjct: 529 STYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCK 575
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| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 142/506 (28%), Positives = 247/506 (48%)
Query: 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181
EH+ T +I C + + + + + S +VN V++A++
Sbjct: 102 EHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVA 161
Query: 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCF-PDTVTYSALISA 240
+ ++ K +P T +++I L +G + L + M G F PD VTY +++
Sbjct: 162 LVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYG--FQPDEVTYGPVLNR 219
Query: 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT 300
K G A+ LF +M+E ++ + Y+ ++ K G + AL L EM+ KG
Sbjct: 220 LCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 279
Query: 301 VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360
V TY+ LI GL G+ +D + M+ PD+V + LI+V + G+L +A +L+N
Sbjct: 280 VVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYN 339
Query: 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420
+M P+ +TYN++I + EA+ F+ M + G P TYSILI+ +CK
Sbjct: 340 EMITRGIAPDTITYNSLIDGFCKENC-LHEANQMFDLMVSKGCEPDIVTYSILINSYCKA 398
Query: 421 NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVY 480
RV+ L E+ KG P Y +L+ G+ ++ + AA ELF E+ S Y
Sbjct: 399 KRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTY 458
Query: 481 AVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEE 540
+++ G L+ A+++F +M+K R + YN ++ GM A +DDA+SL + +
Sbjct: 459 GILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSD 518
Query: 541 DGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGC-LSRAGMFE 599
G PD+ ++N+++ GL K G A +F KM+ PD +YN ++ L +G+
Sbjct: 519 KGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLIS 578
Query: 600 EAARLMKDMNAKGFEYDQITYSSILE 625
+ L+++M GF D T +++
Sbjct: 579 -SVELIEEMKVCGFSADSSTIKMVID 603
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LW84 | PP236_ARATH | No assigned EC number | 0.6914 | 0.9843 | 0.9781 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00034422001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (638 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 638 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-35 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-26 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-23 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-22 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-21 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 6e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 2e-35
Identities = 99/408 (24%), Positives = 192/408 (47%), Gaps = 25/408 (6%)
Query: 215 HELYNEMCNEGNCFPDTVTYSALI-----SAFGKL------GRDIS-AIRLFDEMKENGL 262
H + + C + + ++ LI S F L +DI A+R+ ++E GL
Sbjct: 409 HAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGL 468
Query: 263 QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG 322
+ K+YTTL+S K G+V+ + EM G V+T+ LI G RAG+V A+G
Sbjct: 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528
Query: 323 LFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKM--EALQCKPNVVTYNTVIKS 380
+ M + KPD V+ N LI+ G++G ++ A + +M E P+ +T ++K+
Sbjct: 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588
Query: 381 LFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP 440
+ A ++ + + +P Y+I ++ + + A + ++M++KG P
Sbjct: 589 CANA-GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP 647
Query: 441 CPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSD---AV 497
+ +L++ G A + A E+ + ++ Y+ ++ G C + A+
Sbjct: 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM---GACSNAKNWKKAL 704
Query: 498 DLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGL 557
+L+ ++K ++ +P V T NAL++ + + A +L M+ G P+ +++I+L
Sbjct: 705 ELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764
Query: 558 AKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILG-CLSRAGMFEEAARL 604
+ +++ ++ + IKP+ V I G CL R FE+A L
Sbjct: 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRR---FEKACAL 809
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 6e-26
Identities = 70/280 (25%), Positives = 133/280 (47%), Gaps = 2/280 (0%)
Query: 171 GKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCF-P 229
+A V KA + ++S+ KP +N++I Q G ++ ++ EM E + P
Sbjct: 518 ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP 577
Query: 230 DTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLV 289
D +T AL+ A G+ A ++ + E ++ T ++YT V+ + G+ + AL +
Sbjct: 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637
Query: 290 QEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRA 349
+MK KG ++ L+ G AG ++ A+ + + K+G K V ++L+ A
Sbjct: 638 DDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697
Query: 350 GRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFT 409
+ AL+L+ +++++ +P V T N +I +L E +A +MK G+ P+ T
Sbjct: 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ-LPKALEVLSEMKRLGLCPNTIT 756
Query: 410 YSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLI 449
YSIL+ + + + LL + +E G P +
Sbjct: 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-23
Identities = 101/409 (24%), Positives = 166/409 (40%), Gaps = 48/409 (11%)
Query: 235 SALISAFGKLGRDISAIRLFDEMKENGLQPTAKI--YTTLVSIYFKLGEVEKALGLVQEM 292
+ALI+ + K G +SA +FD M P + ++S YF+ GE + L L M
Sbjct: 226 NALITMYVKCGDVVSARLVFDRM------PRRDCISWNAMISGYFENGECLEGLELFFTM 279
Query: 293 KGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRL 352
+ + T T +I G + ++K G D+ + N+LI + G
Sbjct: 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW 339
Query: 353 EDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSI 412
+A K+F++ME K + V++ +I S +E +A + M+ + V P T +
Sbjct: 340 GEAEKVFSRME---TK-DAVSWTAMI-SGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394
Query: 413 LIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYC 472
++ ++ L E E KG +LI Y K K + A E+F + E
Sbjct: 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD 454
Query: 473 GCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTY----------NALMSG- 521
S + +I R +A+ F +M L KP+ T ALM G
Sbjct: 455 VIS----WTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGK 509
Query: 522 -----MVRAGM---------IDDAYSLLRRMEE-----DGCVPDINSHNIILNGLAKSGG 562
++R G+ + D Y RM + D+ S NI+L G G
Sbjct: 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGK 569
Query: 563 PKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAK 611
A+E+F +M S + PD V++ ++L SR+GM + M K
Sbjct: 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 2e-22
Identities = 77/312 (24%), Positives = 138/312 (44%), Gaps = 22/312 (7%)
Query: 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT 231
K+ V+ +F+++ + + +T+ ++I + G K Y M ++ N PD
Sbjct: 484 KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPDR 542
Query: 232 VTYSALISAFGKLGRDISAIRLFD---EMKENG--LQPTAKIYTTLVSIYFKLGEVEKAL 286
V ++ALISA G+ G + R FD EMK + P L+ G+V++A
Sbjct: 543 VVFNALISACGQSG---AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599
Query: 287 GLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVL 346
+ Q + T YT + + G + A ++ +M K+G KPD V + L++V
Sbjct: 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659
Query: 347 GRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAW------FEKMKA 400
G AG L+ A ++ K V+Y++++ + S A W +E +K+
Sbjct: 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA-------CSNAKNWKKALELYEDIKS 712
Query: 401 NGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEA 460
+ P+ T + LI C+ N++ KA +L EM+ G P Y L+ + +
Sbjct: 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772
Query: 461 ANELFLELKEYC 472
+L + KE
Sbjct: 773 GLDLLSQAKEDG 784
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 3e-21
Identities = 91/412 (22%), Positives = 169/412 (41%), Gaps = 86/412 (20%)
Query: 233 TYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEM 292
TY AL+ A L ++ ++ +G +P + ++ ++ K G + A L EM
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 293 KGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG--CKP---------------- 334
+ + ++ +I GL AG +A+ LF M ++G +P
Sbjct: 185 PER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 335 -----------------DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTV 377
D + LI++ + G +EDA +F+ M + V +N++
Sbjct: 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSM 296
Query: 378 IKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKG 437
+ + + EA + +M+ +GV FT+SI+I F + +E A
Sbjct: 297 LAG-YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK---------- 345
Query: 438 FPPCPAAYCSLI-NGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDA 496
A+ LI G+ AN ++L Y K GR+ DA
Sbjct: 346 -----QAHAGLIRTGFPLDI---VANTALVDL--YS----------------KWGRMEDA 379
Query: 497 VDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNG 556
++F+ M + ++ ++NAL++G G A + RM +G P+ + +L+
Sbjct: 380 RNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 557 LAKSGGPKRAMEIFTKM-QHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKD 607
SG ++ EIF M ++ IKP A+ Y ++ L R G+ +EA +++
Sbjct: 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 2e-19
Identities = 118/557 (21%), Positives = 215/557 (38%), Gaps = 131/557 (23%)
Query: 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEM 221
V++ ++ + K V A +F ++ R C ++N+MI GY+E N
Sbjct: 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCI----SWNAMI-----SGYFE------NGE 268
Query: 222 CNEG----------NCFPDTVTYSALISAFGKLGRDISAIRLFDEMK----ENGLQPTAK 267
C EG + PD +T +++ISA LG RL EM + G
Sbjct: 269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGD----ERLGREMHGYVVKTGFAVDVS 324
Query: 268 IYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM 327
+ +L+ +Y LG +A + M+ K ++T +I G + G + A + M
Sbjct: 325 VCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALM 380
Query: 328 LKEGCKPD-----------------------------------IVLINNLINVLGRAGRL 352
++ PD +V+ N LI + + +
Sbjct: 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440
Query: 353 EDALKLFNKMEALQCKPNVVTYNTVIKSL-FESKAPASEASAWFEKMKANGVLPSPFTYS 411
+ AL++F+ + + +V+++ ++I L ++ EA +F +M + P+ T
Sbjct: 441 DKALEVFHNIP----EKDVISWTSIIAGLRLNNRC--FEALIFFRQMLLT-LKPNSVTLI 493
Query: 412 ILIDGFCKTNRVE-----KAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFL 466
+ + + AH+L + GF P +L++ Y + R A
Sbjct: 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN-----ALLDLYVRCGRMNYA----- 543
Query: 467 ELKEYCGCSSARV-YAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRA 525
++ V + +++ + G+ S AV+LFN M + PD T+ +L+ R+
Sbjct: 544 -WNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602
Query: 526 GMIDDAYSLLRRMEED-GCVPDINSHNIILNGLAKSGGPKRAMEIFTKM----------- 573
GM+ MEE P++ + +++ L ++G A KM
Sbjct: 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGA 662
Query: 574 ------------------QHS-EIKPDAVSYNTILGCL-SRAGMFEEAARLMKDMNAKGF 613
QH E+ P++V Y +L L + AG ++E AR+ K M G
Sbjct: 663 LLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722
Query: 614 EYDQITYSSILEAVGKV 630
D S +E GKV
Sbjct: 723 TVD--PGCSWVEVKGKV 737
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 1e-14
Identities = 18/50 (36%), Positives = 33/50 (66%)
Query: 510 PDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK 559
PDV TYN L+ G + G +++A L M++ G P++ +++I+++GL K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 2e-14
Identities = 68/298 (22%), Positives = 131/298 (43%), Gaps = 15/298 (5%)
Query: 343 INVLGRAGRLEDALKLFNKMEA-LQCKPNVVTYNTVIKSLFESKAP-ASEASAWFEKMKA 400
I L GR +AL+LF +EA TY+ ++++ K+ +A W +++
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWH--VES 151
Query: 401 NGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEA 460
+G P + + ++ K + A L +EM E+ A++ ++I G A Y
Sbjct: 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYRE 207
Query: 461 ANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMS 520
A LF E+ E + R + VM++ G L + K D + AL+
Sbjct: 208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267
Query: 521 GMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKP 580
+ G I+DA + M E V + N +L G A G + A+ ++ +M+ S +
Sbjct: 268 MYSKCGDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323
Query: 581 DAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV---GKVDEDRN 635
D +++ ++ SR + E A + + GF D + +++++ G++++ RN
Sbjct: 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 3e-14
Identities = 91/446 (20%), Positives = 175/446 (39%), Gaps = 86/446 (19%)
Query: 110 QFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNI 169
+ F+ F ++TY AL+ + I + + S +++ ++ +
Sbjct: 108 ELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167
Query: 170 LGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG-NCF 228
K M+ A +F ++ R ++ ++I L+ G Y + L+ EM +G +
Sbjct: 168 HVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE 223
Query: 229 P---------------------------------DTVTYSALISAFGKLGRDISAIRLFD 255
P DT ALI + K G A +FD
Sbjct: 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD 283
Query: 256 EMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG 315
M E T + ++++ Y G E+AL L EM+ G ++ +T++ +I+ R
Sbjct: 284 GMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339
Query: 316 RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYN 375
+E A +++ G DIV L+++ + GR+EDA +F++M + N++++N
Sbjct: 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWN 395
Query: 376 TVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEM-E 434
+I + + ++A FE+M A GV P+ T+ ++ + E+ + + M E
Sbjct: 396 ALIAG-YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
Query: 435 EKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLS 494
P A YA MI+ G+ G L
Sbjct: 455 NHRIKP-----------------------------------RAMHYACMIELLGREGLLD 479
Query: 495 DAVDLFNEMKKLRCKPDVYTYNALMS 520
+A + +++ KP V + AL++
Sbjct: 480 EAYAM---IRRAPFKPTVNMWAALLT 502
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 1e-13
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 369 PNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419
P+VVTYNT+I + EA F +MK G+ P+ +TYSILIDG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKV-EEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.7 bits (159), Expect = 2e-13
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 334 PDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSL 381
PD+V N LI+ + G++E+ALKLFN+M+ KPNV TY+ +I L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 5e-13
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 480 YAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR 524
Y +I + K G++ +A+ LFNEMKK KP+VYTY+ L+ G+ +
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 3e-12
Identities = 83/396 (20%), Positives = 162/396 (40%), Gaps = 18/396 (4%)
Query: 235 SALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG 294
+A++S F + G + A +F +M E L + LV Y K G ++AL L M
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFS----WNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 295 KGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLED 354
G VYT+ +++ G + + ++++ G + D+ ++N LI + + G +
Sbjct: 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240
Query: 355 ALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILI 414
A +F++M C +++N +I FE+ E F M+ V P T + +I
Sbjct: 241 ARLVFDRMPRRDC----ISWNAMISGYFENGE-CLEGLELFFTMRELSVDPDLMTITSVI 295
Query: 415 DGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474
+ + + GF + SLI Y + A ++F ++
Sbjct: 296 SACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----T 351
Query: 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSL 534
A + MI + K G A++ + M++ PD T +++S G +D L
Sbjct: 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411
Query: 535 LRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSR 594
E G + + N ++ +K +A+E+F + + D +S+ +I+ L
Sbjct: 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRL 467
Query: 595 AGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKV 630
EA + M + + +T + L A ++
Sbjct: 468 NNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARI 502
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 5e-12
Identities = 87/399 (21%), Positives = 160/399 (40%), Gaps = 51/399 (12%)
Query: 250 AIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIK 309
A++L + M+E + Y L F+L E ++A E + C+ + ++ L
Sbjct: 70 ALKLLESMQELRVPVDEDAYVAL----FRLCEWKRA----VEEGSRVCSRALSSHPSLGV 121
Query: 310 GLGRA--------GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361
LG A G + A+ +F M + D+ N L+ +AG ++AL L+++
Sbjct: 122 RLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHR 177
Query: 362 MEALQCKPNVVTYNTVIKSL--FESKAPASEASAWFEKMKANGVLPSPFTYSI-----LI 414
M +P+V T+ V+++ A E A V+ F + LI
Sbjct: 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA--------HVVRFGFELDVDVVNALI 229
Query: 415 DGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474
+ K V A L+ + M + ++ ++I+GY + ELF ++E
Sbjct: 230 TMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELFFTMREL--- 282
Query: 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKP----DVYTYNALMSGMVRAGMIDD 530
S + C L D L EM K DV N+L+ + G +
Sbjct: 283 SVDPDLMTITSVISACELLGD-ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341
Query: 531 AYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILG 590
A + RME D S +++G K+G P +A+E + M+ + PD ++ ++L
Sbjct: 342 AEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397
Query: 591 CLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGK 629
+ G + +L + KG + ++++E K
Sbjct: 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 2e-11
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 11/186 (5%)
Query: 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR 189
AL+ + ++ +QD + +G S ++ AK KAL ++ IKS
Sbjct: 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713
Query: 190 KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDIS 249
K +PT +T N++I L + K E+ +EM G C P+T+TYS L+ A +
Sbjct: 714 KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC-PNTITYSILLVASERKDDADV 772
Query: 250 AIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLV----------QEMKGKGCAL 299
+ L + KE+G++P + + + + E ALG E K AL
Sbjct: 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832
Query: 300 TVYTYT 305
VY T
Sbjct: 833 MVYRET 838
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 8e-11
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 405 PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGK 454
P TY+ LIDG+CK +VE+A L EM+++G P Y LI+G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 1e-10
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 193 PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243
P TYN++I ++G E+ +L+NEM G P+ TYS LI K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 3e-10
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 264 PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR 313
P Y TL+ Y K G+VE+AL L EMK +G VYTY+ LI GL +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 5e-10
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 229 PDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274
PD VTY+ LI + K G+ A++LF+EMK+ G++P Y+ L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-09
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 301 VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGR 348
V TY LI G + G+VE+A LF M K G KP++ + LI+ L +
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 2e-09
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 580 PDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEA 626
PD V+YNT++ + G EEA +L +M +G + + TYS +++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 4e-09
Identities = 14/50 (28%), Positives = 32/50 (64%)
Query: 545 PDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSR 594
PD+ ++N +++G K G + A+++F +M+ IKP+ +Y+ ++ L +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 4e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 401 NGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEME 434
G+ P TY+ LIDG C+ RV++A LL+EME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 8e-09
Identities = 59/304 (19%), Positives = 114/304 (37%), Gaps = 49/304 (16%)
Query: 150 DMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEG 209
DM + S +V++ G A ++KA I + + K
Sbjct: 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK----------------- 681
Query: 210 YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIY 269
TV+YS+L+ A A+ L++++K L+PT
Sbjct: 682 -------------------LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722
Query: 270 TTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329
L++ + ++ KAL ++ EMK G TY+ L+ R + L +
Sbjct: 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782
Query: 330 EGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPAS 389
+G KP++V+ + + R R E A L VV++++ + E+K +
Sbjct: 783 DGIKPNLVMCRCITGLCLR--RFEKACALGEP---------VVSFDSGRPQI-ENKWTSW 830
Query: 390 EASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLI 449
+ E + A G LP+ S ++ + + L+E + + +L+
Sbjct: 831 ALMVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLV 889
Query: 450 NGYG 453
+G+G
Sbjct: 890 DGFG 893
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.0 bits (121), Expect = 2e-08
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 508 CKPDVYTYNALMSGMVRAGMIDDAYSLLRRME 539
KPDV TYN L+ G+ RAG +D+A LL ME
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 4e-08
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 513 YTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDI 547
TYN L+ G+ +AG +++A L + M+E G PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 6e-07
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 226 NCFPDTVTYSALISAFGKLGRDISAIRLFDEMK 258
PD VTY+ LI + GR A+ L DEM+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (109), Expect = 8e-07
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 331 GCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363
G KPD+V N LI+ L RAGR+++A++L ++ME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 408 FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP 440
TY+ LIDG CK RVE+A L +EM+E+G P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 55/254 (21%), Positives = 97/254 (38%), Gaps = 43/254 (16%)
Query: 416 GFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCS 475
C ++E+A LLE M+E P AY +L + E + +
Sbjct: 60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL 119
Query: 476 SARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLL 535
R+ M+ F + G L A +F +M + D++++N L+ G +AG D+A L
Sbjct: 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLY 175
Query: 536 RRMEEDGCVPD----------------------INSHNI---------ILNGL----AKS 560
RM G PD +++H + ++N L K
Sbjct: 176 HRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC 235
Query: 561 GGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITY 620
G A +F +M + D +S+N ++ G E L M + D +T
Sbjct: 236 GDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291
Query: 621 SSILEAVGKVDEDR 634
+S++ A + ++R
Sbjct: 292 TSVISACELLGDER 305
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-06
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 302 YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDI 336
TY LI GL +AGRVE+A LF M + G +PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 5e-06
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 295 KGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM 327
KG V TY LI GL RAGRV++A L M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 6e-06
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 408 FTYSILIDGFCKTNRVEKAHLLLEEMEEKGF 438
TY+ LI G+CK ++E+A L +EM+EKG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 513 YTYNALMSGMVRAGMIDDAYSLLRRMEEDGC 543
TYN+L+SG +AG +++A L + M+E G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 478 RVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDV 512
Y +I K GR+ +A++LF EMK+ +PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-05
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 512 VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP 545
+ TYNAL+ + +AG D A ++L M+ G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 583 VSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYD 616
V+YNT++ L +AG EEA L K+M +G E D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 232 VTYSALISAFGKLGRDISAIRLFDEMKENGL 262
VTY++LIS + K G+ A+ LF EMKE G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 3e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 407 PFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP 440
TY+ L+ K + A +LEEM+ G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (107), Expect = 3e-05
Identities = 50/240 (20%), Positives = 87/240 (36%), Gaps = 5/240 (2%)
Query: 161 SVLSEIVNILGKAKMVNKALSIFYQ-IKSRKCKPTANTYNSMILMLMQEGYYEKIHELYN 219
++L + +L + +AL + + ++ A + L L++ G E+ EL
Sbjct: 24 ALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLE 83
Query: 220 EMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279
+ L LG+ A+ L ++ P + ++L
Sbjct: 84 KALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYEL 143
Query: 280 GEVEKALGLVQEMKGKGCALTVYTYTELIKG--LGRAGRVEDAYGLFMNMLKEGCKPDIV 337
G+ E+AL L ++ L L G L GR E+A L LK D
Sbjct: 144 GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAE 203
Query: 338 LINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEK 397
+ NL + + G+ E+AL+ + K AL+ P+ + L EA EK
Sbjct: 204 ALLNLGLLYLKLGKYEEALEYYEK--ALELDPDNAEALYNLALLLLELGRYEEALEALEK 261
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 232 VTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA 266
VTY+ LI K GR A+ LF EMKE G++P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202
+++ K V +AL +F ++K R KP TY+ +I
Sbjct: 9 LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNV 371
N LI+ L +AGR+E+AL+LF +M+ +P+V
Sbjct: 4 NTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 3e-04
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 578 IKPDAVSYNTILGCLSRAGMFEEAARLMKDM 608
+KPD V+YNT++ L RAG +EA L+ +M
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 268 IYTTLVSIYFKLGEVEKALGLVQEMKGKGC 297
Y +L+S Y K G++E+AL L +EMK KG
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 6e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 302 YTYTELIKGLGRAGRVEDAYGLFMNMLKEGC 332
TY LI G +AG++E+A LF M ++G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (97), Expect = 6e-04
Identities = 63/283 (22%), Positives = 108/283 (38%), Gaps = 8/283 (2%)
Query: 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK-GCALTVY 302
L + A+ + E L + +++ LGE+ +AL L++E +
Sbjct: 1 LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60
Query: 303 TYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI-NNLINVLGRAGRLEDALKLFNK 361
L L + GR+E+A L L+ P++ NL +L G+ E+AL+L K
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 362 MEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG--VLPSPFTYSILIDGFCK 419
AL P++ + +L+E EA +EK + L
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYE-EALELYEKALELDPELNELAEALLALGALLEA 179
Query: 420 TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARV 479
R E+A LLE+ + A +L Y K +YE A E + + E +A
Sbjct: 180 LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP-DNAEA 238
Query: 480 YAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGM 522
+ + GR +A++ K L PD+Y + +
Sbjct: 239 LYNLALLLLELGRYEEALEALE--KALELDPDLYNLGLALLLL 279
|
Length = 291 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 8e-04
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 541 DGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ 574
G PD+ ++N +++GL ++G A+E+ +M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 9e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 583 VSYNTILGCLSRAGMFEEAARLMKDMNAKGF 613
V+YN+++ +AG EEA L K+M KG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 268 IYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV 301
Y TL+ K G VE+AL L +EMK +G V
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 479 VYAVMIKHFGKCGRLSDAVDLFNEMKKLRC 508
Y +I + K G+L +A++LF EMK+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 340 NNLINVLGRAGRLEDALKLFNKMEALQC 367
N+LI+ +AG+LE+AL+LF +M+
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKP 510
Y ++ K G A+ + EMK KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 638 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.76 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.75 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.74 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.71 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.71 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.7 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.66 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.59 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.59 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.58 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.57 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.57 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.56 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.53 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.53 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.52 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.5 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.5 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.5 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.49 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.46 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.45 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.44 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.39 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.39 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.39 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.37 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.35 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.33 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.3 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.28 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.26 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.24 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.23 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.22 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.17 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.17 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.15 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.15 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.15 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.12 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.12 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.12 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.04 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.04 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.03 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.0 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.96 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.96 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.96 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.94 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.93 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.87 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.85 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.81 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.81 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.81 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.79 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.78 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.73 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.69 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.69 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.66 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.66 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.65 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.64 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.64 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.64 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.63 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.62 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.61 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.61 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.61 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.6 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.58 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.57 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.57 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.51 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.49 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.47 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.47 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.45 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.44 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.4 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.37 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.33 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.27 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.25 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.21 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.2 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.08 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.08 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.05 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.0 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.99 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.98 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.97 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.93 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.88 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.86 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.86 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.83 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.83 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.78 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.77 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.77 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.75 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.75 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.73 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.73 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.7 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.7 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.67 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.66 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.63 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.62 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.6 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.58 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.58 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.57 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.57 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.55 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.54 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.54 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.52 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.48 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.47 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.46 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.45 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.43 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.42 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.41 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.39 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.39 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.39 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.37 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.36 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.35 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.35 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.33 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.31 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.23 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.17 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.16 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.14 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.12 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.12 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.1 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.09 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.07 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.07 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.06 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.03 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.99 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.87 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.81 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.76 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.73 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.72 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.7 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.66 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.66 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.6 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.56 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.47 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.42 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.41 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.39 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.34 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.28 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.25 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.99 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.96 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.95 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.95 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.94 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.91 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.87 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.87 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.83 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.82 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.81 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.81 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.77 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.77 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.77 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.71 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.67 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.6 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.59 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.55 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.55 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.49 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.48 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.37 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.37 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.31 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.21 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.18 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.14 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.14 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.91 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.77 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.73 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.72 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.71 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.65 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.57 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.54 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.54 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.46 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.45 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.37 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.33 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.32 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.29 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.28 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.27 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.25 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.25 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.18 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.18 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.12 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.07 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.0 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.85 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.48 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 93.25 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.92 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.87 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 92.8 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 92.69 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.68 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.65 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.26 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.85 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.8 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 91.7 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.57 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.27 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 90.84 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.4 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.28 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.22 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.08 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.03 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.01 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.89 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.87 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.79 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 89.77 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.51 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.2 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.19 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.81 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.64 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.49 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.81 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.71 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.68 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.3 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.81 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.61 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.52 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.16 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.97 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 85.9 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.74 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 85.35 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.22 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.17 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 85.1 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 84.99 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 84.41 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 84.28 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.85 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 83.85 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 83.8 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 83.58 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 83.24 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 82.95 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 82.73 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.58 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.47 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.35 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 80.06 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-70 Score=591.27 Aligned_cols=502 Identities=21% Similarity=0.315 Sum_probs=447.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTC-VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
++...|..++..|.+.|++++|+++|++|.+.|+ +++..+++.++..|.+.|.+++|..+|..|.. |+..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4667888888888899999999999999988875 46777788888899999999999999988875 789999999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE 281 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 281 (638)
+.+|++.|++++|.++|++|.+.|.. ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~-pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLK-ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999888765 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006614 282 VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK--EGCKPDIVLINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 282 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 359 (638)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999976 578899999999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006614 360 NKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFP 439 (638)
Q Consensus 360 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (638)
+.|.+.|+.|+..+|+.+|.+|++.|+.+++ ..+|+.|...|+.||..+|+.++++|++.|++++|.+++++|.+.|+.
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deA-l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA-LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999988777 888899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006614 440 PCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALM 519 (638)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 519 (638)
|+..+|+.+|.+|++.|++++|.++|++|.+.+..|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CChHHHHHHHHHhhhC
Q 006614 520 SGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK----S-------------------GGPKRAMEIFTKMQHS 576 (638)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~ 576 (638)
.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ + +..++|..+|++|.+.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999998865432 1 1236788999999999
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhcc
Q 006614 577 EIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKV 630 (638)
Q Consensus 577 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 630 (638)
|+.||..||+.++.++++.+..+.+..++++|...+..|+..+|++++++|++.
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~ 895 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY 895 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC
Confidence 999999999999988888888999999998888888888899999999988653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-70 Score=588.06 Aligned_cols=509 Identities=17% Similarity=0.249 Sum_probs=484.3
Q ss_pred ccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 006614 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
.+++..|+++|+++.+..-.+++..+++.++..|.+.|.+++|+.+++.|.. |+..+|+.++.+|++.|++++|.+
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHH
Confidence 3778999999998876655678889999999999999999999999998853 999999999999999999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006614 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|.. ||..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 459 lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~-PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G 537 (1060)
T PLN03218 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE-ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999998865 999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006614 262 LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG--KGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|
T Consensus 538 v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty 617 (1060)
T PLN03218 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH
Confidence 999999999999999999999999999999986 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006614 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 340 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~ 419 (638)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+.+++ ..+++.|.+.|+.||..+|+.+|.+|++
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA-~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA-FEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998888 9999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 006614 420 TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDL 499 (638)
Q Consensus 420 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 499 (638)
.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|..||..+|+.++.+|++.|++++|.++
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH----c-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006614 500 FNEMKKLRCKPDVYTYNALMSGMVR----A-------------------GMIDDAYSLLRRMEEDGCVPDINSHNIILNG 556 (638)
Q Consensus 500 ~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 556 (638)
|++|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+.|+.||..||+.++.+
T Consensus 777 ~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~c 856 (1060)
T PLN03218 777 LSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGC 856 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 9999999999999999999876432 1 1246799999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 557 LAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQI 618 (638)
Q Consensus 557 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 618 (638)
+++.+..+.+..+++.|...+..|+..+|+++++++++. .++|..++++|...|+.|+..
T Consensus 857 l~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 857 LQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 999999999999999998888899999999999998543 368999999999999999985
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-69 Score=592.54 Aligned_cols=494 Identities=20% Similarity=0.285 Sum_probs=371.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 006614 120 NFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYN 199 (638)
Q Consensus 120 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 199 (638)
|+.||..+|+.+++++++.+++..+.+++..|.+.|..|++.+++.++.+|++.|++++|..+|++|.+ ||..+||
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n 257 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWN 257 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhH
Confidence 344444444444444444444444444444444444444555555666666666666666666666653 3666666
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006614 200 SMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (638)
.+|.+|++.|++++|+++|++|...|.. ||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~-Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVD-PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc
Confidence 6666666666666666666666666554 666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006614 280 GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 359 (638)
|++++|.++|++|.. ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++
T Consensus 337 g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~ 412 (857)
T PLN03077 337 GSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH 412 (857)
T ss_pred CCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHH
Confidence 666666666666643 4666677777777777777777777777766666777777777777777777777777777
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006614 360 NKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFP 439 (638)
Q Consensus 360 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (638)
+.+.+.|+.|+..+|+.++..|++.|+.+++ ..+|+.|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.
T Consensus 413 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A-~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~ 486 (857)
T PLN03077 413 ELAERKGLISYVVVANALIEMYSKCKCIDKA-LEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLK 486 (857)
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHcCCHHHH-HHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCC
Confidence 7776667777777777777777777766665 666666653 4566777777777777777777777777765 468
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006614 440 PCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALM 519 (638)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 519 (638)
||..+|+.++.+|++.|+++.+.+++..+.+.|..++..+++.++++|+++|++++|..+|+++ .||..+||++|
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI 561 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILL 561 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHH
Confidence 8888888888888888888888888888888888888888899999999999999999999887 48999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh-hCCCCCCHHHHHHHHHHHHccCCH
Q 006614 520 SGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ-HSEIKPDAVSYNTILGCLSRAGMF 598 (638)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~ 598 (638)
.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|++++++|++.|++
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~ 641 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999999999999999999999 589999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCccCC
Q 006614 599 EEAARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 599 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 636 (638)
++|.+++++| ++.||..+|++|+.+|...|+.+.+
T Consensus 642 ~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 642 TEAYNFINKM---PITPDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred HHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHH
Confidence 9999999999 5899999999999999988887643
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-69 Score=590.44 Aligned_cols=510 Identities=18% Similarity=0.231 Sum_probs=456.6
Q ss_pred ccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 006614 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
.++...|.++|+... ++|..+||.++.+|++.|++++|+++|++|...|+.||..+|+.+++++++.++++.+.+
T Consensus 134 ~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 134 FGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred CCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 455677777777442 357788888888888888888999999888888888888889888888888888888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006614 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
++..+.+.|+.||..+||.++.+|++.|++++|..+|++|.. ||..+|+.+|.+|++.|+.++|+++|++|.+.|
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 888888888888888999999999999999999999988854 788889999999999999999999999999889
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006614 262 LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINN 341 (638)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 341 (638)
+.||..||+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~ 359 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA 359 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHH
Confidence 9999999999999999999999999999999998998999999999999999999999999998885 468888999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006614 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421 (638)
Q Consensus 342 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 421 (638)
++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+.+.+ .++++.|.+.|+.|+..+|+.++++|++.|
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a-~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG-VKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHH-HHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 9999999999999999999998888899999999999988888888777 888888998899999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
++++|.++|++|.+ +|..+|+.++.+|++.|+.++|.++|++|.. +..||..+|+.++.+|++.|+++.+.+++.
T Consensus 439 ~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 439 CIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred CHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 99999999988864 5677899999999999999999999999876 488999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC
Q 006614 502 EMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD 581 (638)
Q Consensus 502 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 581 (638)
.+.+.|+.+|..++|+|+.+|++.|++++|.++|+++ .||..+||++|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999887 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHH-hCCCCCCHHhHHHHHHHHhccCCccCC
Q 006614 582 AVSYNTILGCLSRAGMFEEAARLMKDMN-AKGFEYDQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a 636 (638)
..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|++++++|++.|++++|
T Consensus 589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999999999999999 689999999999999999999998876
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=536.08 Aligned_cols=474 Identities=19% Similarity=0.278 Sum_probs=446.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRST-CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS 200 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 200 (638)
..+..+|+.++..|.+.|++++|.++|+.|...+ ..|+..+|+.++.++.+.++++.|.+++..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456789999999999999999999999998764 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.++++.|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999964 8999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 360 (638)
..+.+.+++..+.+.|+.||..+|+.++++|++.|++++|.++|++|. .+|+.+||.++.+|++.|+.++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999995 4589999999999999999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006614 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP 440 (638)
Q Consensus 361 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 440 (638)
+|.+.|+.||..||+.++.++++.+..+++ .+++..|.+.|+.||..+|+.++++|++.|++++|.++|++|. .+
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a-~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~ 389 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHA-KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RK 389 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHH-HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CC
Confidence 999999999999999999999999998887 8899999999999999999999999999999999999999986 46
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHH
Q 006614 441 CPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKK-LRCKPDVYTYNALM 519 (638)
Q Consensus 441 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~ 519 (638)
|..+|+.+|.+|++.|+.++|.++|++|.+.|..||..+|+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 88999999999999999999999999999999999999999999999999999999999999976 59999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHccCCH
Q 006614 520 SGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMF 598 (638)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~ 598 (638)
.+|++.|++++|.+++++| +..|+..+|+.++.+|+..|+++.|..+++++.+ +.|+ ..+|..+++.|++.|++
T Consensus 470 ~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCH
Confidence 9999999999999998875 5789999999999999999999999999999974 4564 67999999999999999
Q ss_pred HHHHHHHHHHHhCCCC
Q 006614 599 EEAARLMKDMNAKGFE 614 (638)
Q Consensus 599 ~~A~~~~~~m~~~~~~ 614 (638)
++|.+++++|.+.|+.
T Consensus 545 ~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 545 AEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHHHHHHcCCc
Confidence 9999999999999875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-63 Score=529.56 Aligned_cols=500 Identities=18% Similarity=0.259 Sum_probs=460.7
Q ss_pred ccccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 006614 100 NIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 100 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 179 (638)
...++++.|+++|.|+....++.|+..+|+.++.++.+.++++.+.+++..|.+.|..|+..+++.++.+|++.|++++|
T Consensus 98 ~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A 177 (697)
T PLN03081 98 VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDA 177 (697)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHH
Confidence 34577899999999998777788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 180 LSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|.. ||..+|+.++.++++.|..+.+.+++..+.+
T Consensus 178 ~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 178 RRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD-AEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred HHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999975 69999999999999999999999999999998876 9999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006614 260 NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
.|+.||..+|+.|+++|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 253 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~ 328 (697)
T PLN03081 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328 (697)
T ss_pred hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999965 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006614 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 340 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~ 419 (638)
+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|+.+++ ..+|+.|. .||..+|+.+|.+|++
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A-~~vf~~m~----~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA-RNVFDRMP----RKNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH-HHHHHhCC----CCCeeeHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888 89999986 4789999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHccCCHHHHHH
Q 006614 420 TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE-YCGCSSARVYAVMIKHFGKCGRLSDAVD 498 (638)
Q Consensus 420 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~ 498 (638)
.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .+..|+..+|+.++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999986 6899999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006614 499 LFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP-DINSHNIILNGLAKSGGPKRAMEIFTKMQHSE 577 (638)
Q Consensus 499 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 577 (638)
++++| ++.|+..+|++|+.+|...|+++.|..+++++.+. .| +..+|..+++.|++.|++++|.++++.|.+.|
T Consensus 484 ~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 484 MIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99876 46899999999999999999999999999999764 45 47799999999999999999999999999998
Q ss_pred CCCCH-HHHHHHH---HHHH--------ccCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 578 IKPDA-VSYNTIL---GCLS--------RAGMFEEAARLMKDMNAKGFEYDQI 618 (638)
Q Consensus 578 ~~p~~-~~~~~l~---~~~~--------~~g~~~~A~~~~~~m~~~~~~p~~~ 618 (638)
++..+ .+|..+- +.+. ...-++...++..+|.+.|+.||..
T Consensus 559 ~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 559 LSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred CccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 76432 2332110 0010 0112456677888999999999853
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=299.21 Aligned_cols=517 Identities=13% Similarity=0.049 Sum_probs=420.5
Q ss_pred ccccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 006614 100 NIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 100 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 179 (638)
...++.+.|..+|..+.... +.+...|..+..++...|++++|.+.+..+.+.. +........++..+.+.|++++|
T Consensus 374 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 450 (899)
T TIGR02917 374 LALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKA 450 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHH
Confidence 34566777788777765543 4456677777777888888888888887777643 23344556677778888888888
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 180 LSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
..+++++.... +.+..++..+...+...|++++|.+.|+++.+..+ .+...+..+...+...|++++|.+.++++.+
T Consensus 451 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 527 (899)
T TIGR02917 451 LAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP--DFFPAAANLARIDIQEGNPDDAIQRFEKVLT 527 (899)
T ss_pred HHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888887653 44777888888889999999999999999888665 5667778888888889999999999998887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006614 260 NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
.+ +.+..++..+...+.+.|+.++|...++++...++. +...+..++..+.+.|++++|..+++.+.+.. +.+..+|
T Consensus 528 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 604 (899)
T TIGR02917 528 ID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAW 604 (899)
T ss_pred hC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 64 346778888889999999999999999988876543 66778888889999999999999999988764 3477888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006614 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 340 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~ 419 (638)
..+..+|.+.|++++|...++.+.+... .+...+..+...+...++..++ ..+++.+.... +.+..++..++..+..
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKA-ITSLKRALELK-PDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 9999999999999999999999877542 3556677777788888888777 67777777653 4467888889999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 006614 420 TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDL 499 (638)
Q Consensus 420 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 499 (638)
.|++++|..+++.+.+.+ +.+...+..+...+...|++++|.+.|..+.... |+..++..++.++.+.|++++|...
T Consensus 682 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred cCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998876 6778888889999999999999999999998864 3446777888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC
Q 006614 500 FNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIK 579 (638)
Q Consensus 500 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 579 (638)
++++.+.. +.+...+..+...|...|++++|.+.|+++.+.. +.+...++.+...+...|+ .+|+.+++++.... .
T Consensus 759 ~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~ 834 (899)
T TIGR02917 759 LEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-P 834 (899)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-C
Confidence 99988764 5577888889999999999999999999999875 4578889999999999999 88999999988642 2
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCccCC
Q 006614 580 PDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 580 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 636 (638)
-+..++..+..++.+.|++++|.++++++.+.+ +.+..++..+..++.+.|+.++|
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 256677888999999999999999999999875 34888999999999999998765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=295.16 Aligned_cols=512 Identities=13% Similarity=0.076 Sum_probs=312.3
Q ss_pred ccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 006614 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
.++.+.|...|..+.... +.+...+..+...+.+.|++++|+..++.+.... +.++..+..+...+.+.|++++|..
T Consensus 308 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 384 (899)
T TIGR02917 308 LGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAE 384 (899)
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 445566666666554433 3455666667777777777777777777766543 4456667777777777777777777
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006614 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
.|+++.+..+ .+...+..+...+...|++++|.+.|+.+.+..+ ........++..+.+.|++++|.++++.+.+.
T Consensus 385 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 460 (899)
T TIGR02917 385 YLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDP--ELGRADLLLILSYLRSGQFDKALAAAKKLEKK- 460 (899)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Confidence 7777766532 2555666666667777777777777777666543 23344455566666667777777777666654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006614 262 LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINN 341 (638)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 341 (638)
.+.+..++..+...+...|++++|.+.|+++.+..+. +...+..+...+...|++++|...|+++.+.++. +..++..
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~ 538 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILA 538 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHH
Confidence 2345666677777777777777777777776655432 4555666666666777777777777776665433 5566666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006614 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421 (638)
Q Consensus 342 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 421 (638)
+...+.+.|+.++|..+++++...+. .+...+..+...+...|+..++ ..+++.+.... +.+...|..+..++...|
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKA-LAILNEAADAA-PDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHH-HHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 66666666777777776666655432 2344455555666666665555 55555555432 345566666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+. .+.+...+..++..+...|++++|..+++
T Consensus 616 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666666554 445556666666666666666666666666654 33445566666666666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC
Q 006614 502 EMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD 581 (638)
Q Consensus 502 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 581 (638)
.+.+.+ +++...+..+...+...|++++|.+.|+++.+.+ |+..++..++..+.+.|++++|.+.++++.+.. +.+
T Consensus 694 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~ 769 (899)
T TIGR02917 694 SLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PND 769 (899)
T ss_pred HHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 665543 3344555555666666666666666666666543 333455555566666666666666666655432 234
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCC
Q 006614 582 AVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDE 632 (638)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 632 (638)
...+..+...|.+.|++++|.+.|+++.+.. +.+..++..+...+.+.|+
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence 5555556666666666666666666665542 3444555555555555444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-23 Score=230.56 Aligned_cols=549 Identities=10% Similarity=0.042 Sum_probs=377.3
Q ss_pred CCCCCcHHHHHHhhc-ccC-ChHHHHHHh---ccccchHHHHHHHHHhhhCCCCCCCHHHH----------------HHH
Q 006614 73 FKWGPDAEKALEVLK-MRV-DHRLVHQVL---NIDVEINVKIQFFKWAGRRRNFEHNSTTY----------------MAL 131 (638)
Q Consensus 73 ~~~~~~~~~~l~~~~-~~~-~~~~~~~vl---~~~~~~~~a~~~f~~~~~~~~~~~~~~~~----------------~~l 131 (638)
.+....+.+.|..+. +.+ +|....... -..++.+.|.+.++.+.+.. |.+...+ ...
T Consensus 41 ~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (1157)
T PRK11447 41 THREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQ 118 (1157)
T ss_pred hCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHH
Confidence 333344556666443 222 233333322 24678899999888766544 3343332 344
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 006614 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGPSV-LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY 210 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 210 (638)
++.+.+.|++++|.+.|+.+++.+ +++... ...........|+.++|+..|+++.+..+. +...+..+...+...|+
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCC
Confidence 567889999999999999998753 444322 112222233569999999999999987533 77888899999999999
Q ss_pred HhHHHHHHHHHHhCCCCC-----------------CC-HHHHH----------------------------------HHH
Q 006614 211 YEKIHELYNEMCNEGNCF-----------------PD-TVTYS----------------------------------ALI 238 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~-----------------~~-~~~~~----------------------------------~l~ 238 (638)
+++|++.++++....... ++ ...+. ...
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 999999999997643210 01 00111 112
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHH------------H
Q 006614 239 SAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT-VYTY------------T 305 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~------------~ 305 (638)
..+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+...... ...| .
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 34556799999999999998863 33788899999999999999999999999987654321 1112 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhc
Q 006614 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN-VVTYNTVIKSLFES 384 (638)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~ 384 (638)
.....+.+.|++++|...|+++++..+. +...+..+...+...|++++|.+.|+++.+.. |+ ...+..+...+ ..
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~-~~ 431 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLY-RQ 431 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH-Hh
Confidence 2245677899999999999999987543 66778888999999999999999999998754 44 34444444444 34
Q ss_pred CChHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 006614 385 KAPASEASAWFEKMKANGVL--------PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAK 456 (638)
Q Consensus 385 ~~~~~~~~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 456 (638)
++..++ ..+++.+...... .....+..+...+...|++++|++.+++..+.. |.++..+..+...|.+.|
T Consensus 432 ~~~~~A-~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKA-LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHH-HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 454444 5555543321100 011234556677888899999999999988875 667778888888899999
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------------------------------
Q 006614 457 RYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL------------------------------ 506 (638)
Q Consensus 457 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------ 506 (638)
++++|...++++.+.. +.+...+..+...+...++.++|+..++.+...
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999887642 223333333333333444444444443332110
Q ss_pred ---------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006614 507 ---------RCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSE 577 (638)
Q Consensus 507 ---------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 577 (638)
..+.+...+..+...+.+.|++++|+..|++.++.. +.+...+..++..+...|++++|.+.++...+.
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~- 666 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT- 666 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 123445566778888999999999999999999864 336888889999999999999999999988754
Q ss_pred CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CC---CHHhHHHHHHHHhccCCccCC
Q 006614 578 IKP-DAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF--EY---DQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 578 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~l~~~~~~~g~~~~a 636 (638)
.| +..++..+..++...|++++|.++++++....- .| +...+..+.+.+.+.|+.++|
T Consensus 667 -~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 667 -ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred -CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 33 456677788889999999999999999986421 22 224566666777777776554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-22 Score=226.83 Aligned_cols=549 Identities=13% Similarity=0.082 Sum_probs=363.5
Q ss_pred ccccccccCCChhhHHHHHHHHHhcCCCCCcHHHHHHhhcc-cCChHH------------------H--HHHhccccchH
Q 006614 48 VSKKFARKDTSARKLDERFIRILKIFKWGPDAEKALEVLKM-RVDHRL------------------V--HQVLNIDVEIN 106 (638)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~------------------~--~~vl~~~~~~~ 106 (638)
.+.+++..+|....+.....++....+....+.+.++.+.. .++... + ..++...++.+
T Consensus 50 ~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~ 129 (1157)
T PRK11447 50 SLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTE 129 (1157)
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHH
Confidence 35666666666555555555555444544444444443321 111111 1 11344567889
Q ss_pred HHHHHHHHhhhCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006614 107 VKIQFFKWAGRRRNFEHNST-TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQ 185 (638)
Q Consensus 107 ~a~~~f~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 185 (638)
.|++.|+.+.... +++.. ....+.......|++++|++.++++.+.. +.++..+..+...+...|+.++|+..+++
T Consensus 130 eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~ 206 (1157)
T PRK11447 130 EALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQ 206 (1157)
T ss_pred HHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999998776443 33332 11112222335689999999999998863 55777888899999999999999999988
Q ss_pred hhhCCC------------------C--------------CCHHH---------------------HHHHHHHHHhcCCHh
Q 006614 186 IKSRKC------------------K--------------PTANT---------------------YNSMILMLMQEGYYE 212 (638)
Q Consensus 186 ~~~~~~------------------~--------------~~~~~---------------------~~~l~~~~~~~g~~~ 212 (638)
+..... . |+... .......+...|+++
T Consensus 207 ~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~ 286 (1157)
T PRK11447 207 MAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGG 286 (1157)
T ss_pred HhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHH
Confidence 754311 0 00000 011244567789999
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHHhc
Q 006614 213 KIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP-TAKIY------------TTLVSIYFKL 279 (638)
Q Consensus 213 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~------------~~li~~~~~~ 279 (638)
+|+..|++.++..+ .+...+..+...+.+.|++++|+..|++..+..... +...| ......+.+.
T Consensus 287 ~A~~~l~~aL~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~ 364 (1157)
T PRK11447 287 KAIPELQQAVRANP--KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA 364 (1157)
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC
Confidence 99999999998775 578889999999999999999999999998753211 11112 1234567789
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006614 280 GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 359 (638)
|++++|++.|+++.+..+. +...+..+...+...|++++|.+.|+++.+..+. +...+..+...|. .++.++|..++
T Consensus 365 g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l 441 (1157)
T PRK11447 365 NNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFI 441 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHH
Confidence 9999999999999987654 6777888899999999999999999999986443 4555555555553 34456666555
Q ss_pred HHHHHCCCC--------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006614 360 NKMEALQCK--------PNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLE 431 (638)
Q Consensus 360 ~~~~~~~~~--------p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 431 (638)
+.+...... .....+..+...+...++..++ ...+++..+.. +-+...+..+...|.+.|++++|...++
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA-~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQA-AELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHH-HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 543221100 0011222333344445555554 44445444432 2234445555556666666666666666
Q ss_pred HHHhCCCCCCHHHHHHH--------------------------------------------HHHHHccCCHHHHHHHHHH
Q 006614 432 EMEEKGFPPCPAAYCSL--------------------------------------------INGYGKAKRYEAANELFLE 467 (638)
Q Consensus 432 ~~~~~~~~~~~~~~~~l--------------------------------------------i~~~~~~g~~~~A~~~~~~ 467 (638)
++.+.. +.++..+..+ ...+...|+.++|..+++
T Consensus 520 ~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~- 597 (1157)
T PRK11447 520 RLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR- 597 (1157)
T ss_pred HHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-
Confidence 655432 3333333322 334455555566655554
Q ss_pred HHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006614 468 LKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDI 547 (638)
Q Consensus 468 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 547 (638)
..+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|++.++...+.. +.+.
T Consensus 598 ----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~ 671 (1157)
T PRK11447 598 ----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSL 671 (1157)
T ss_pred ----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCCh
Confidence 134566677888999999999999999999998864 4467889999999999999999999999888752 2346
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCC--CC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCC
Q 006614 548 NSHNIILNGLAKSGGPKRAMEIFTKMQHSEI--KP---DAVSYNTILGCLSRAGMFEEAARLMKDMNA-KGFE 614 (638)
Q Consensus 548 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~ 614 (638)
..+..+...+...|++++|.++++++..... .| +...+..+...+...|++++|.+.|++... .|+.
T Consensus 672 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 672 NTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 6777788899999999999999999986421 22 234666678889999999999999999864 3443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.5e-22 Score=188.04 Aligned_cols=429 Identities=16% Similarity=0.127 Sum_probs=221.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 006614 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
-..+..-+.+.|++.+|.+.-...-..+ +.+....-.+-..+.+..+.++....-....+. .+.-.++|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 4455556666677777766554443322 222223333334444555555444333332222 12355667777777777
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIY-TTLVSIYFKLGEVEKAL 286 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~ 286 (638)
.|++++|+.+|+.+.+..+ .....|..+..++...|+.+.|.+.|.+..+. .|+.... +.+...+-..|++++|.
T Consensus 129 rg~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 7777777777777776654 45666777777777777777777777776664 3544433 23444444567777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006614 287 GLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 287 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
..+.+.++..+. -...|+.|...+-.+|++..|++.|++..+..+. -...|-.|.+.|...+.++.|...|.+.....
T Consensus 205 ~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 205 ACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 777666665332 3456666666677777777777777777664322 23456666666666666666666666554321
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006614 367 CKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYC 446 (638)
Q Consensus 367 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 446 (638)
|+. ...+..+...|...|.++.|+..|++.++.. |.-+.+|+
T Consensus 283 --pn~-----------------------------------A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~ 324 (966)
T KOG4626|consen 283 --PNH-----------------------------------AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYN 324 (966)
T ss_pred --Ccc-----------------------------------hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHh
Confidence 221 1122223333444444444544444444432 33344444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHc
Q 006614 447 SLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRA 525 (638)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~ 525 (638)
.+..++-..|++.+|.+.+.+.... .+......+.|...|...|.+++|..+|....+. .|. ....+.|...|-++
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhc
Confidence 4544444445555555555444443 2223334444444444455555555554444432 222 23344444444455
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHccCCHHHHHH
Q 006614 526 GMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEAAR 603 (638)
Q Consensus 526 g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 603 (638)
|++++|+..|++.+. +.|+ ...|+.+...|-..|+.+.|.+.+.+.+. +.|. ...++.|...|..+|+..+|+.
T Consensus 402 gnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred ccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 555555555554444 2333 33444444445555555555555544442 2232 2334444444445555555555
Q ss_pred HHHHHH
Q 006614 604 LMKDMN 609 (638)
Q Consensus 604 ~~~~m~ 609 (638)
-+++.+
T Consensus 478 sY~~aL 483 (966)
T KOG4626|consen 478 SYRTAL 483 (966)
T ss_pred HHHHHH
Confidence 554444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-19 Score=192.70 Aligned_cols=506 Identities=10% Similarity=0.017 Sum_probs=262.8
Q ss_pred ccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 006614 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
.++++.|+..|+.+.... |.+..++..+++.|.+.|++++|...+++.++. .|+...+...+..+ +++.+|..
T Consensus 57 ~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 57 NNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 366777777777776655 556777777777777777777777777777764 33333333323222 67777777
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHH--------HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH-HHHHHccCChHHHHH
Q 006614 182 IFYQIKSRKCKPTANTYNSMILM--------LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL-ISAFGKLGRDISAIR 252 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~ 252 (638)
+|+++.+..+. +...+..+... |.+.++..++++ .....+. |+....... ...|.+.|++++|++
T Consensus 130 ~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~-~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 130 TVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAAS-PEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCC-CCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 77777766322 34444444443 444433333333 2211111 333333333 666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006614 253 LFDEMKENGLQPTAKIYTTLVSIYFK-LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 253 ~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
++.++.+.+ +.+..-...|...|.. .++ +++..+++.. +.-+...+..+...|.+.|+.++|.++++++....
T Consensus 204 lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 204 LYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 666666654 2234444455555555 244 5555553321 11255555566666666666666665555543211
Q ss_pred CC-C----------------------------------------------------------------------------
Q 006614 332 CK-P---------------------------------------------------------------------------- 334 (638)
Q Consensus 332 ~~-p---------------------------------------------------------------------------- 334 (638)
.. |
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 00 0
Q ss_pred -----------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCChHHH--HHH
Q 006614 335 -----------------DIVLINNLINVLGRAGRLEDALKLFNKMEAL--QCKPNVVTYNTVIKSLFESKAPASE--ASA 393 (638)
Q Consensus 335 -----------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~--~~~ 393 (638)
+......+.....+.|+.++|..+++..... +..++....+.++..+.+.+..... +..
T Consensus 358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 358 KAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 0111111111223445566666666655441 1112222333444444444331100 000
Q ss_pred ----------------------HHHHHHh-CCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006614 394 ----------------------WFEKMKA-NGV-LP--SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCS 447 (638)
Q Consensus 394 ----------------------~~~~m~~-~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 447 (638)
..+.... .+. ++ +...|..+..++.. ++.++|...+.+..... |+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 0011100 011 22 45555555555554 56666777666655542 33333333
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 006614 448 LINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGM 527 (638)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 527 (638)
+...+...|++++|...|+++... +|+...+..+...+.+.|++++|...+++..+.. +++...+..+.......|+
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCC
Confidence 444445667777777777765443 2333334455556666677777777776666543 2222222223333334467
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 528 IDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKD 607 (638)
Q Consensus 528 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 607 (638)
+++|...+++.++. .|+...+..+...+.+.|++++|...+++..... +.+...++.+..++...|++++|+..+++
T Consensus 592 ~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 592 PELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777666664 3456666666666667777777777777666532 12345555666666666777777776666
Q ss_pred HHhCCCCCCHHhHHHHHHHHhccCCccCC
Q 006614 608 MNAKGFEYDQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 608 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 636 (638)
..+.. +-+...+..+..++...|+++.|
T Consensus 669 AL~l~-P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 669 AHKGL-PDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 66431 23444556666666666665543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-20 Score=180.22 Aligned_cols=435 Identities=20% Similarity=0.210 Sum_probs=343.4
Q ss_pred cchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 006614 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
++...|.+--..+.++. +.+....-.+-.++.+..+.+....--....+. .+-...+|..+.+.+-..|++++|+..
T Consensus 62 gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~ 138 (966)
T KOG4626|consen 62 GDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALAL 138 (966)
T ss_pred cCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHH
Confidence 55566666555554444 222233333445566666666555444444443 344567899999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006614 183 FYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVT-YSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
|+.+.+..++ .+..|..+..++...|+.+.|.+.|.+.++.+ |+... .+.+...+-..|++.+|...+.+.++.
T Consensus 139 y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln---P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~- 213 (966)
T KOG4626|consen 139 YRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN---PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET- 213 (966)
T ss_pred HHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC---cchhhhhcchhHHHHhhcccchhHHHHHHHHhh-
Confidence 9999988544 78899999999999999999999999999876 55443 344555566689999999999998875
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006614 262 LQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLIN 340 (638)
Q Consensus 262 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 340 (638)
.|. ...|+.|...+-..|+.-.|+..|++....++. -...|..|...|...+.+++|...|.+.....+. ..+++.
T Consensus 214 -qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~g 290 (966)
T KOG4626|consen 214 -QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHG 290 (966)
T ss_pred -CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhcc
Confidence 343 567999999999999999999999999987544 4678889999999999999999999998876443 567888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006614 341 NLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420 (638)
Q Consensus 341 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 420 (638)
.+...|...|.+|.|...|++..+.. |+ =+..|+.|..++-..
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~--P~-----------------------------------F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQ--PN-----------------------------------FPDAYNNLANALKDK 333 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcC--CC-----------------------------------chHHHhHHHHHHHhc
Confidence 89999999999999999999887633 22 124577777788888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHH
Q 006614 421 NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLF 500 (638)
Q Consensus 421 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 500 (638)
|++.+|...|++..... +....+.+.|...+...|.+++|..+|....+. .+.-....+.|...|-..|++++|+..+
T Consensus 334 G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v-~p~~aaa~nNLa~i~kqqgnl~~Ai~~Y 411 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV-FPEFAAAHNNLASIYKQQGNLDDAIMCY 411 (966)
T ss_pred cchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh-ChhhhhhhhhHHHHHHhcccHHHHHHHH
Confidence 99999999999988875 666778889999999999999999999998874 2233566888999999999999999999
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006614 501 NEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAMEIFTKMQHSEI 578 (638)
Q Consensus 501 ~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 578 (638)
++..+ +.|+ ...|+.+...|-..|+.+.|++.+.+++.- .|. ...++.|...|-..|++.+|++-++.... +
T Consensus 412 kealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--l 485 (966)
T KOG4626|consen 412 KEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--L 485 (966)
T ss_pred HHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--c
Confidence 99887 4676 567899999999999999999999999985 444 67888899999999999999999999885 4
Q ss_pred CCCH-HHHHHHHHHHH
Q 006614 579 KPDA-VSYNTILGCLS 593 (638)
Q Consensus 579 ~p~~-~~~~~l~~~~~ 593 (638)
+||. ..|..++.++-
T Consensus 486 kPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 486 KPDFPDAYCNLLHCLQ 501 (966)
T ss_pred CCCCchhhhHHHHHHH
Confidence 6663 45556665553
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-18 Score=174.36 Aligned_cols=498 Identities=15% Similarity=0.123 Sum_probs=377.6
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCHHHHHHH
Q 006614 105 INVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTC--VMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 105 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
...+++.+..+-... ++++.+.+.|.+-+.-.|++..+|.+...+..... +.-...|..+.++|...|++++|...
T Consensus 252 ~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 355666666554444 56788999999999999999999999999877531 23345689999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC----ChHHHHHHHHHHH
Q 006614 183 FYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG----RDISAIRLFDEMK 258 (638)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~m~ 258 (638)
|.+..+......+..+--+...+++.|+++.+...|+.+.+..+ .+..+...|...|...+ ..+.|..++.+..
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p--~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP--NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc--chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99988764332244556688999999999999999999999875 56677778888887765 5677888888877
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C
Q 006614 259 ENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMK----GKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE---G 331 (638)
Q Consensus 259 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~ 331 (638)
+.- +.|...|-.+...|.....+.. +..|.... ..+-.+.+...|.+...+...|++++|...|+..... .
T Consensus 408 ~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 408 EQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred hcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 753 4588889888888876655444 66665543 4455578899999999999999999999999998765 1
Q ss_pred CCCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC
Q 006614 332 CKPD------IVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLP 405 (638)
Q Consensus 332 ~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~ 405 (638)
..+| +.+-..+...+-..++++.|.++|..+.+.. |+-+....-+.+..+.......+..++...... ...
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~ 562 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSS 562 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccC
Confidence 2222 2234446677778889999999999998854 666655555544555545544446666666553 244
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHc------------cCCHHHHHHHHHHHHHcC
Q 006614 406 SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKG-FPPCPAAYCSLINGYGK------------AKRYEAANELFLELKEYC 472 (638)
Q Consensus 406 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~~ 472 (638)
++..++.+...+.+...+..|.+-|+...+.- ..+|+++...|.+.|.. .+..++|+++|.++.+.
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~- 641 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN- 641 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-
Confidence 66677778889999999999999777766542 23677777777776543 24678899999998886
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHH
Q 006614 473 GCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED-GCVPDINSHN 551 (638)
Q Consensus 473 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~ 551 (638)
.+.|...-|-+.-+++..|++.+|..+|.+..+... .+..+|-.+.++|...|++..|+++|+...+. ....+.....
T Consensus 642 dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 642 DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 556788888899999999999999999999988652 34567889999999999999999999987765 4445788899
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH------------------HccCCHHHHHHHHHHHHhCCC
Q 006614 552 IILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCL------------------SRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 552 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~------------------~~~g~~~~A~~~~~~m~~~~~ 613 (638)
.|.+++.+.|++.+|.+.+.........-....||..+-.. ...+..+.|.++|.+|...+-
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999888654333345555443222 234567889999999987653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-18 Score=185.21 Aligned_cols=429 Identities=12% Similarity=0.001 Sum_probs=259.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
.+......+.+.|++++|+..|++.++ ..|++..|..+..+|.+.|++++|+..+.+..+..+. +...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 466777888999999999999999887 5677888888999999999999999999998887433 6778888999999
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006614 207 QEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKAL 286 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 286 (638)
..|++++|+..|..+..... .+......++..+.. ..+........+.. +++...+..+.. |....+.+...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~--~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDG--FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCC--CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcch
Confidence 99999999998887766543 222222222222211 12222233332221 122222222222 22211111111
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 287 GLVQEMKGKGCALT-VYTYTELIKG---LGRAGRVEDAYGLFMNMLKEG-CKP-DIVLINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 287 ~~~~~m~~~~~~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 360 (638)
.-+....+. .+. ...+..+... ....+++++|...|+...+.+ ..| +...++.+...+...|++++|...++
T Consensus 278 ~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 111111111 111 0111111111 123467888888888888764 122 44567777788888888888888888
Q ss_pred HHHHCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006614 361 KMEALQCKPN-VVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFP 439 (638)
Q Consensus 361 ~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (638)
+..+.. |+ ...|..+...+...|+..++ ...++...+.. +.+...|..+...+...|++++|...|++..+.. +
T Consensus 356 kal~l~--P~~~~~~~~la~~~~~~g~~~eA-~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P 430 (615)
T TIGR00990 356 KSIELD--PRVTQSYIKRASMNLELGDPDKA-EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-P 430 (615)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-c
Confidence 887643 43 33455555555566666555 55555554432 3345666667777777777777777777777664 5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH------
Q 006614 440 PCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVY------ 513 (638)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------ 513 (638)
.+...+..+...+.+.|++++|...|++..+. .+.+...++.+...+...|++++|...|++..+..-..+..
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 55666666777777777777777777776664 34456666777777777777777777777766542110110
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 514 TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
.++.....+...|++++|.+++++.++.. +.+...+..+...+.+.|++++|.++|++..+
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 11111222333567777777777766643 12344566667777777777777777777654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-17 Score=177.06 Aligned_cols=542 Identities=12% Similarity=0.050 Sum_probs=335.1
Q ss_pred cccccccCCChhhHHHHHHHHHhcCCCCCcHHHHHHhh-cccCChHHHHHHhccccchHHHHHHHHHhhhCCCCCCCHHH
Q 006614 49 SKKFARKDTSARKLDERFIRILKIFKWGPDAEKALEVL-KMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTT 127 (638)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~vl~~~~~~~~a~~~f~~~~~~~~~~~~~~~ 127 (638)
..++++.+|....+...+.++....+..+.+...++.. ...++.......+....+.+.|...|+.+.... +-+..+
T Consensus 67 l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~kA~~~ye~l~~~~--P~n~~~ 144 (987)
T PRK09782 67 FEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVKSVTTVEELLAQQ--KACDAV 144 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccChhHHHHHHHHHHhC--CCChhH
Confidence 34455555555555544455544444434443333321 222222333333333355566666666554433 334445
Q ss_pred HHHHHHH--------HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHH
Q 006614 128 YMALIRC--------LDETRMIGVMWKSIQDMVRSTCVMGPSVLSEI-VNILGKAKMVNKALSIFYQIKSRKCKPTANTY 198 (638)
Q Consensus 128 ~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 198 (638)
+..+... |.+.++..++++ .......|.+.+.... .+.|.+.|++++|+.++.++.+.++. +....
T Consensus 145 ~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~ 219 (987)
T PRK09782 145 PTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAER 219 (987)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHH
Confidence 5555554 554433333333 2111122234433333 67777777777777777777776533 45555
Q ss_pred HHHHHHHHh-cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CCHHHH-------
Q 006614 199 NSMILMLMQ-EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQ-PTAKIY------- 269 (638)
Q Consensus 199 ~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~------- 269 (638)
..+..+|.+ .++ +++..+++...+ .+...+..+...+.+.|+.++|.++++++...-.. |+..+|
T Consensus 220 ~~L~~ay~q~l~~-~~a~al~~~~lk-----~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~ 293 (987)
T PRK09782 220 RQWFDVLLAGQLD-DRLLALQSQGIF-----TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKY 293 (987)
T ss_pred HHHHHHHHHhhCH-HHHHHHhchhcc-----cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhc
Confidence 666666666 355 666666443211 46667777777777777777777777766532111 221111
Q ss_pred -----------------------HHHHHHHHhcCCHHHHHHHHH-----------------------------HHHhCCC
Q 006614 270 -----------------------TTLVSIYFKLGEVEKALGLVQ-----------------------------EMKGKGC 297 (638)
Q Consensus 270 -----------------------~~li~~~~~~g~~~~A~~~~~-----------------------------~m~~~~~ 297 (638)
..++..+.+.++++.+.++.. .|.+...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~ 373 (987)
T PRK09782 294 SANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEP 373 (987)
T ss_pred cCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCC
Confidence 112344445555554443321 1111100
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCC---HHHHHHH--------------
Q 006614 298 ALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE--GCKPDIVLINNLINVLGRAGR---LEDALKL-------------- 358 (638)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~---~~~A~~~-------------- 358 (638)
-+......+.-...+.|+.++|.++|+..... ...++.....-++..|.+.+. ..++..+
T Consensus 374 -~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 452 (987)
T PRK09782 374 -ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQS 452 (987)
T ss_pred -CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHh
Confidence 02222223333456788899999999888762 122345566678888887766 3333322
Q ss_pred --------HHHHHH-CCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006614 359 --------FNKMEA-LQCKP---NVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKA 426 (638)
Q Consensus 359 --------~~~~~~-~~~~p---~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 426 (638)
.+.... .+..| +...|..+-..+.. ++..+++..+.+..... |+......+...+...|++++|
T Consensus 453 ~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~---Pd~~~~L~lA~al~~~Gr~eeA 528 (987)
T PRK09782 453 QLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ---PDAWQHRAVAYQAYQVEDYATA 528 (987)
T ss_pred hhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC---CchHHHHHHHHHHHHCCCHHHH
Confidence 111111 11212 44555555555554 66666634344444333 5655444455566789999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 427 HLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
...++++... +|+...+..+...+.+.|+.++|...++...+.. +.+...+..+.......|++++|...+++..+.
T Consensus 529 i~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l 605 (987)
T PRK09782 529 LAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI 605 (987)
T ss_pred HHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999998665 4555667777888999999999999999998864 334444444444555669999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHH
Q 006614 507 RCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYN 586 (638)
Q Consensus 507 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 586 (638)
.|+...|..+...+.+.|++++|+..+++..+.. +.+...++.+...+...|++++|+..+++..+.. +-+...+.
T Consensus 606 --~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~ 681 (987)
T PRK09782 606 --APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIR 681 (987)
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4788889999999999999999999999999974 3357788889999999999999999999998753 23577889
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006614 587 TILGCLSRAGMFEEAARLMKDMNAKGFEYDQ 617 (638)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 617 (638)
.+..++...|++++|...+++..+. .|+.
T Consensus 682 nLA~al~~lGd~~eA~~~l~~Al~l--~P~~ 710 (987)
T PRK09782 682 QLAYVNQRLDDMAATQHYARLVIDD--IDNQ 710 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 9999999999999999999999854 4554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-20 Score=186.29 Aligned_cols=303 Identities=14% Similarity=0.142 Sum_probs=212.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHhc
Q 006614 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT---ANTYNSMILMLMQE 208 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 208 (638)
...+...|++++|+..|+++++.+ +.+..++..+...+...|++++|...++.+...+..++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445677888999999999988853 44567888888888899999999999988877532221 24677788888889
Q ss_pred CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHH
Q 006614 209 GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT----AKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 209 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~ 284 (638)
|++++|..+|+++.+..+ .+..++..++..+.+.|++++|.+.++.+.+.+..++ ...+..+...+.+.|++++
T Consensus 121 g~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGD--FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcCCc--chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999887654 5677888888888889999999999988887643222 1245567777888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
|.+.++++.+.... +...+..+...+.+.|++++|.++++++.+.++.....+++.++.+|.+.|++++|...++.+.+
T Consensus 199 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888776432 45677778888888888888888888888764433345677788888888888888888888766
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCC
Q 006614 365 LQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK---TNRVEKAHLLLEEMEEKGFPPC 441 (638)
Q Consensus 365 ~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~ 441 (638)
.. |+...+..+...+.+.|+..++ ..+++.+.+. .|+..++..++..+.. .|+.+++..+++++.+.++.++
T Consensus 278 ~~--p~~~~~~~la~~~~~~g~~~~A-~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 278 EY--PGADLLLALAQLLEEQEGPEAA-QALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred hC--CCchHHHHHHHHHHHhCCHHHH-HHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 43 4444445555555555555544 4444444433 3555555555554443 3355555555555555444444
Q ss_pred HH
Q 006614 442 PA 443 (638)
Q Consensus 442 ~~ 443 (638)
+.
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 43
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-20 Score=184.25 Aligned_cols=308 Identities=18% Similarity=0.201 Sum_probs=184.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh
Q 006614 237 LISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT---VYTYTELIKGLGR 313 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~ 313 (638)
....+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3444556677777777777777753 23455677777777777777777777777766432211 2456666777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 006614 314 AGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASA 393 (638)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~ 393 (638)
.|++++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..+...
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------------------- 177 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV--------------------- 177 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH---------------------
Confidence 777777777777776652 2356667777777777777777777777765533111000
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 006614 394 WFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG 473 (638)
Q Consensus 394 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 473 (638)
.....+..+...+.+.|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.++++.+.+.
T Consensus 178 -----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 178 -----------EIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred -----------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 001123445556667777777777777776653 44455666666666666666666666666665432
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006614 474 CSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNII 553 (638)
Q Consensus 474 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 553 (638)
.....+++.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.+
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l 321 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRL 321 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHH
Confidence 222344555666666666666666666666554 244444455556666666666666666665553 3555555555
Q ss_pred HHHHHh---cCChHHHHHHHHHhhhCCCCCCHH
Q 006614 554 LNGLAK---SGGPKRAMEIFTKMQHSEIKPDAV 583 (638)
Q Consensus 554 ~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~ 583 (638)
+..+.. .|+.+++..++++|.+.++.|++.
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 555443 335566666666666554444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-18 Score=170.13 Aligned_cols=518 Identities=15% Similarity=0.109 Sum_probs=332.6
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 006614 105 INVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRST--CVMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 105 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
.+.|.+-|..+.++. ++++-.+..-+.+....++|..|..+|+.++... +.+|++ ..+..++.+.|+.+.|+..
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHH
Confidence 578888888887766 6677677666777778889999999999877653 334443 3445677888888998888
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhc---CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 183 FYQIKSRKCKPTANTYNSMILMLMQE---GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
|.+..+..+ .++.++-.|...-... ..+..++.++...-..++ .++...+.|...|.-.|++..++.+.+.+..
T Consensus 222 ~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 222 FERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 888888743 2344444333332222 345677777777777666 5777788888888888888888888888876
Q ss_pred CCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006614 260 NGLQ--PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIV 337 (638)
Q Consensus 260 ~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 337 (638)
.... .-...|..+..+|-..|++++|...|.+..+....--...+--+...+.+.|+++.+...|+...+..+. +..
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~e 377 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYE 377 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHH
Confidence 5311 1234577788888888888888888887776543212344455677888888888888888888876433 566
Q ss_pred HHHHHHHHHHccC----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHH----HHHHhCCCCCCHHH
Q 006614 338 LINNLINVLGRAG----RLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWF----EKMKANGVLPSPFT 409 (638)
Q Consensus 338 ~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~----~~m~~~~~~~~~~~ 409 (638)
+...|...|...+ ..+.|..++.+..+.. ..|...|-.+-. +...++.... ..++ +.+...+-.+-+..
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq-l~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ-LLEQTDPWAS-LDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH-HHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHH
Confidence 7777777777664 4566677776666533 224444444433 3344444433 3333 33344555566777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--------
Q 006614 410 YSILIDGFCKTNRVEKAHLLLEEMEEK---GFPPC------PAAYCSLINGYGKAKRYEAANELFLELKEYC-------- 472 (638)
Q Consensus 410 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------- 472 (638)
.|.+...+...|++++|...|...... ...++ ..+-..+...+-..++.+.|.+.|..+.+..
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~yl 534 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYL 534 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHH
Confidence 777777788888888888887776544 11111 1122233444444455555555555544421
Q ss_pred -------------------------CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH--
Q 006614 473 -------------------------GCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL-RCKPDVYTYNALMSGMVR-- 524 (638)
Q Consensus 473 -------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~-- 524 (638)
...++..++.+...|.+...+..|..-|+...+. ...+|.++.-.|.+.|.+
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 2233444444554555555555555544444332 122455555555554442
Q ss_pred ----------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 006614 525 ----------AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSR 594 (638)
Q Consensus 525 ----------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 594 (638)
.+..++|+++|.+.++.. +-|...-|.+.-.++..|++.+|..+|.+..+... -+..+|-.+.++|..
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVE 692 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHH
Confidence 234567888888887764 33677777788888888888888888888877532 244567788888888
Q ss_pred cCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHhccCCccC
Q 006614 595 AGMFEEAARLMKDMNAK-GFEYDQITYSSILEAVGKVDEDRN 635 (638)
Q Consensus 595 ~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~ 635 (638)
.|+|-.|+++|+...+. .-.-+..+...|.+++.+.|.+.+
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 88888888888886653 344566677788888887776654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.5e-18 Score=177.56 Aligned_cols=334 Identities=10% Similarity=0.072 Sum_probs=235.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
-...++..+.+.|++++|..+++..+... +-++..+..++.+....|++++|...|+++.+..+. +...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 34456778888999999999998888753 555667777777888899999999999999887433 6778888889999
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006614 207 QEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKAL 286 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 286 (638)
+.|++++|++.|+++....+ .+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P--~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFS--GNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHH
Confidence 99999999999999988765 5677888888899999999999999988876532 233344333 3477889999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHHH
Q 006614 287 GLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLED----ALKLFNKM 362 (638)
Q Consensus 287 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~ 362 (638)
..++.+.+....++...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++ |...+++.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 99998877654445555566677888899999999999998887543 67777888888888898875 67777777
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 006614 363 EALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCP 442 (638)
Q Consensus 363 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 442 (638)
..... .+...+..+...+...|+..++ ...++...... +.+...+..+..++.+.|++++|...++++.+.+ +.+.
T Consensus 277 l~l~P-~~~~a~~~lg~~l~~~g~~~eA-~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~ 352 (656)
T PRK15174 277 LQFNS-DNVRIVTLYADALIRTGQNEKA-IPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTS 352 (656)
T ss_pred HhhCC-CCHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccch
Confidence 66432 1334555555555555555555 44445544432 2234445555666666666666666666666543 2222
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 006614 443 AAYCSLINGYGKAKRYEAANELFLELKEY 471 (638)
Q Consensus 443 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (638)
..+..+..++...|+.++|...|++..+.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33333455566666666666666666553
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-17 Score=173.98 Aligned_cols=334 Identities=11% Similarity=0.067 Sum_probs=225.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
...++..+.+.|++++|..+++......+. +...+..++.+....|++++|++.|+++....+ .+...+..+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P--~~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV--CQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHH
Confidence 455667778888888888888888777544 455566666777778888888888888888775 56667788888888
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006614 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++.+....+. +...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 8888888888888888752 335667788888888888888888888877766544 23333333 34677888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHH---HHHHHHHHH
Q 006614 323 LFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASE---ASAWFEKMK 399 (638)
Q Consensus 323 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~---~~~~~~~m~ 399 (638)
.++.+.+....++......+...+.+.|++++|...++.+..... .+...+..+-..+...|+..++ +...++...
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 888887765444555555566777888888888888888876542 2344455555566666665542 355555555
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHH
Q 006614 400 ANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARV 479 (638)
Q Consensus 400 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 479 (638)
... +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+.+.|++++|...++.+..... .+...
T Consensus 278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-~~~~~ 354 (656)
T PRK15174 278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG-VTSKW 354 (656)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cchHH
Confidence 542 2345566666666667777777777777666654 44555666666666666777777776666665421 12223
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 480 YAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
+..+..++...|++++|...|++..+.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 333455566666667776666666554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-17 Score=172.80 Aligned_cols=432 Identities=14% Similarity=-0.016 Sum_probs=304.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
..+....+.+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++..++..+ .+...+..+..+
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p--~~~~a~~~~a~a 203 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP--DYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHH
Confidence 34566778888999999999999998876 56778888899999999999999999999998765 567788889999
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006614 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 320 (638)
+...|++++|+..|......+-. +......++..+.. ..+........+.... +...+..+.. +........+
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~ 276 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPR 276 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcc
Confidence 99999999999888776654211 22222222222222 2233333333332211 2112222222 2222122222
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHH---HHccCCHHHHHHHHHHHHHCC-CCCC-hhhHHHHHHHHHhcCChHHHHHHH
Q 006614 321 YGLFMNMLKEGCKPDI-VLINNLINV---LGRAGRLEDALKLFNKMEALQ-CKPN-VVTYNTVIKSLFESKAPASEASAW 394 (638)
Q Consensus 321 ~~~~~~~~~~~~~p~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~ll~~~~~~~~~~~~~~~~ 394 (638)
..-+....+. .++. ..+..+... ....+++++|.+.|+...+.+ ..|+ ...++.+-..+...|+..++ ...
T Consensus 277 ~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA-~~~ 353 (615)
T TIGR00990 277 PAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEA-LAD 353 (615)
T ss_pred hhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHH-HHH
Confidence 2222221111 1111 111111111 123478999999999998764 2343 44566666677778888877 777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 006614 395 FEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474 (638)
Q Consensus 395 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (638)
++...... +.+...|..+...+...|++++|...+++..+.. +.++.++..+...+...|++++|...|++..+. .+
T Consensus 354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-~P 430 (615)
T TIGR00990 354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-DP 430 (615)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-Cc
Confidence 77777652 2346688888999999999999999999998875 677899999999999999999999999999986 34
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH------
Q 006614 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDIN------ 548 (638)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------ 548 (638)
.+...+..+...+.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|++.|++.++.....+..
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 567788889999999999999999999998753 4457889999999999999999999999999863221111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 549 SHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAK 611 (638)
Q Consensus 549 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 611 (638)
.++..+..+...|++++|.+++++...... .+...+..+...+.+.|++++|.++|++..+.
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 112222234456999999999999886532 24557889999999999999999999999864
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-16 Score=172.31 Aligned_cols=418 Identities=13% Similarity=0.078 Sum_probs=280.4
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHH
Q 006614 156 CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYS 235 (638)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 235 (638)
.+.++....-.+......|+.++|++++.+..... +.+...+..+..++.+.|++++|.++|++.+...+ .+...+.
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~ 87 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP--QNDDYQR 87 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHH
Confidence 35677777777788888888888888888887632 44566788888888888888888888888887664 5566677
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006614 236 ALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG 315 (638)
Q Consensus 236 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 315 (638)
.+...+...|++++|+..++++.+.. +.+.. +..+...+...|+.++|+..++++.+..+. +...+..+...+...+
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 88888888888888888888888762 33555 777888888888888888888888887554 5566666777777888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHcc-----CCH---HHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006614 316 RVEDAYGLFMNMLKEGCKPDIV------LINNLINVLGRA-----GRL---EDALKLFNKMEALQCKPNVVTYNTVIKSL 381 (638)
Q Consensus 316 ~~~~A~~~~~~~~~~~~~p~~~------~~~~li~~~~~~-----g~~---~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 381 (638)
..++|+..++.... .|+.. ....++...... +++ ++|
T Consensus 165 ~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~A-------------------------- 215 (765)
T PRK10049 165 LSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRA-------------------------- 215 (765)
T ss_pred ChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHH--------------------------
Confidence 88888887776553 23210 011111111100 111 222
Q ss_pred HhcCChHHHHHHHHHHHHhC-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 006614 382 FESKAPASEASAWFEKMKAN-GVLPSPF-TY----SILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKA 455 (638)
Q Consensus 382 ~~~~~~~~~~~~~~~~m~~~-~~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 455 (638)
...++.+... ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.+........+...|...
T Consensus 216 ----------l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~ 285 (765)
T PRK10049 216 ----------LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKL 285 (765)
T ss_pred ----------HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence 3333333321 1112111 11 111233456688888888888887765221122233356678888
Q ss_pred CCHHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----------CCCC---HHHHHHH
Q 006614 456 KRYEAANELFLELKEYCGCS---SARVYAVMIKHFGKCGRLSDAVDLFNEMKKLR-----------CKPD---VYTYNAL 518 (638)
Q Consensus 456 g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~p~---~~~~~~l 518 (638)
|++++|...|+++.+..... .......+..++...|++++|...++.+.+.. -.|+ ...+..+
T Consensus 286 g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 286 HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 88888888888876642211 13445566667788888888888888877642 1123 1234566
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHccCC
Q 006614 519 MSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGM 597 (638)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 597 (638)
...+...|+.++|+++++++.... +-+...+..+...+...|++++|++.+++.... .|+ ...+...+..+.+.|+
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCC
Confidence 677888899999999999988763 335777888888888999999999999988864 354 5566677778888899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHH
Q 006614 598 FEEAARLMKDMNAKGFEYDQITYSSI 623 (638)
Q Consensus 598 ~~~A~~~~~~m~~~~~~p~~~~~~~l 623 (638)
+++|..+++++.+. .|+...-..+
T Consensus 443 ~~~A~~~~~~ll~~--~Pd~~~~~~~ 466 (765)
T PRK10049 443 WRQMDVLTDDVVAR--EPQDPGVQRL 466 (765)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 99999999999853 4554433333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-17 Score=174.99 Aligned_cols=406 Identities=11% Similarity=0.037 Sum_probs=263.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+.++..-.-.+.+....|+.++|++++...... .+.+...+..+..++.+.|++++|..+|++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 456666667778888889999998888888752 25556678888888888999999999998887763 2356777788
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE 281 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 281 (638)
+..+...|++++|+..++++.+..+ .+.. +..+...+...|+.++|+..++++.+.. +.+...+..+...+...+.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P--~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAP--DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC--CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 8888889999999999999888765 4555 8788888888899999999999888863 2355666677888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHc-CCCCCHH-HH----HH
Q 006614 282 VEKALGLVQEMKGKGCALTV------YTYTELIKGLG-----RAGRV---EDAYGLFMNMLKE-GCKPDIV-LI----NN 341 (638)
Q Consensus 282 ~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~-~~~p~~~-~~----~~ 341 (638)
.++|++.++.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 8888888876654 1221 01112222221 22234 6788888888754 2222221 11 11
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHH
Q 006614 342 LINVLGRAGRLEDALKLFNKMEALQCK-PNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLP---SPFTYSILIDGF 417 (638)
Q Consensus 342 li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~---~~~~~~~li~~~ 417 (638)
.+..+...|++++|...|+.+.+.+.. |+... ..+...+...++.+++ ...++.+....... .......+..++
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~g~~e~A-~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ-RWVASAYLKLHQPEKA-QSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH-HHHHHHHHhcCCcHHH-HHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 123445668888888888888775422 22211 1134456666666666 56666655432110 123445555567
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 006614 418 CKTNRVEKAHLLLEEMEEKGF-----------PPC---PAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVM 483 (638)
Q Consensus 418 ~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 483 (638)
...|++++|..+++.+.+... .|+ ...+..+...+...|+.++|.++++++... .+.+...+..+
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~l 399 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDY 399 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 777888888888877766420 112 123445566666677777777777776665 34456666667
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006614 484 IKHFGKCGRLSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (638)
...+...|++++|+..+++..+.. |+ ...+......+...|++++|..+++++++.
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 777777777777777777666643 43 444555555666667777777777777764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.9e-16 Score=162.79 Aligned_cols=458 Identities=13% Similarity=0.074 Sum_probs=307.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHH
Q 006614 119 RNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP--SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTAN 196 (638)
Q Consensus 119 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 196 (638)
...+..+.+--.-+-...+.|+++.|+..|++.++. .|+. .++ .++..+...|+.++|+..+++..... .....
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~ 103 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSR 103 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHH
Confidence 333444455555566678889999999999888874 3432 344 77788888888899988888887321 22333
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
....+...+...|++++|+++|+++.+..+ .+...+..++..+...++.++|++.++++... .|+...+..++..+
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP--~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~ 179 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDP--TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLN 179 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHH
Confidence 344446677888899999999999888776 45666667788888888888888888888875 45655565555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 006614 277 FKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDAL 356 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 356 (638)
...++..+|++.++++.+..+. +...+..+...+.+.|-...|.++..+- |+..+-..... =+.+.|.
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~-----l~~~~~a 247 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ-----LERDAAA 247 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH-----HHHHHHH
Confidence 5566666688888888887644 6777777888888888888887666552 22221111111 0112222
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCCC-HHHH----HHHHHHHHhcCCHHHHHHHH
Q 006614 357 KLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKA-NGVLPS-PFTY----SILIDGFCKTNRVEKAHLLL 430 (638)
Q Consensus 357 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~-~~~~~~-~~~~----~~li~~~~~~g~~~~A~~~~ 430 (638)
+..+......-. ...-|..+ +. +..-++.+.. .+-.|. ...| .-.+-++...|++.++++.|
T Consensus 248 ~~vr~a~~~~~~-~~~r~~~~----------d~-ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y 315 (822)
T PRK14574 248 EQVRMAVLPTRS-ETERFDIA----------DK-ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEY 315 (822)
T ss_pred HHHhhccccccc-chhhHHHH----------HH-HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 222211100000 00011100 11 1222233322 111122 1111 22345677889999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 431 EEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG-----CSSARVYAVMIKHFGKCGRLSDAVDLFNEMKK 505 (638)
Q Consensus 431 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (638)
+.+...+.+....+...+.++|...++.++|..++..+..... +++......|..+|...+++++|..+++++.+
T Consensus 316 ~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 316 EAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred HHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 9999888776777888999999999999999999999876431 23444457788899999999999999999887
Q ss_pred CC-------------CCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006614 506 LR-------------CKPDV-YTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 506 ~~-------------~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
.. ..||- ..+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|.+.++
T Consensus 396 ~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 396 QTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELK 474 (822)
T ss_pred cCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 31 11222 223445667888999999999999998864 3478888889999999999999999997
Q ss_pred HhhhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 572 KMQHSEIKPD-AVSYNTILGCLSRAGMFEEAARLMKDMNAK 611 (638)
Q Consensus 572 ~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 611 (638)
..... .|+ ..+....+.++...|++++|..+.+...+.
T Consensus 475 ~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 475 AVESL--APRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 77643 454 556667888888899999999999888753
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8e-18 Score=155.59 Aligned_cols=486 Identities=15% Similarity=0.161 Sum_probs=304.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCCCHHHHHHHHHHhhhCCCC----CCHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVL-SEIVNILGKAKMVNKALSIFYQIKSRKCK----PTANTYNS 200 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~ 200 (638)
.+...+.+-|..+.++.+|+..++-+++....|+.-.+ -.+.+.+.+...+.+|+++|.-....-+. ......+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 44555666677777777777777777766555554332 23445566777777777777665543111 12234555
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHH--------HHH
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIY--------TTL 272 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~--------~~l 272 (638)
+...+.+.|+++.|+..|+...+.. |+..+-..|+-.+...|+-++..+.|.+|+.....||..-| ..|
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~---pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEA---PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhC---ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 5556677777777777777776654 66655544555555567777777777777654333332211 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006614 273 VSIYFKLGEVEKALGLVQEMKGKGCALTV----YTYTELIKGLGRAGRV----EDAYGLFMNMLKEGCKPDIVLINNLIN 344 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~p~~~~~~~li~ 344 (638)
+.-..+.. .++.|.+.+-. +. .|-..+|.- .-.-++ +-+++.++.-.-..+..+ .-..-.-
T Consensus 359 l~eai~nd-------~lk~~ek~~ka-~aek~i~ta~kiiap-vi~~~fa~g~dwcle~lk~s~~~~la~d--lei~ka~ 427 (840)
T KOG2003|consen 359 LNEAIKND-------HLKNMEKENKA-DAEKAIITAAKIIAP-VIAPDFAAGCDWCLESLKASQHAELAID--LEINKAG 427 (840)
T ss_pred HHHHHhhH-------HHHHHHHhhhh-hHHHHHHHHHHHhcc-ccccchhcccHHHHHHHHHhhhhhhhhh--hhhhHHH
Confidence 21111111 11111111000 00 000000000 000011 111111111110000000 0011233
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 345 VLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFE-SKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRV 423 (638)
Q Consensus 345 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 423 (638)
-|.+.|+++.|.++++-+.+..-+..+...+.|-..++. .|+....+..+-+..... -.-+......-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~-dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI-DRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc-cccCHHHhhcCCceeeecCcH
Confidence 477899999999999988776554444444444433333 333333334444433322 122333332223344568999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 424 EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEM 503 (638)
Q Consensus 424 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 503 (638)
++|.+.|++..... .........+.-.+-..|++++|++.|-++... ...+..+.-.+...|....+...|++++.+.
T Consensus 507 dka~~~ykeal~nd-asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNND-ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCc-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99999999998765 333444444555677889999999999988764 4457788888999999999999999999887
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHH
Q 006614 504 KKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAV 583 (638)
Q Consensus 504 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 583 (638)
... ++.|......|...|-+.|+-.+|.+.+-+--.. ++-|..+...|..-|....-.++|+.+|++.. =+.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHH
Confidence 765 5667888999999999999999999887655443 45678888889999999999999999999976 4689999
Q ss_pred HHHHHHH-HHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCc
Q 006614 584 SYNTILG-CLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDED 633 (638)
Q Consensus 584 ~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 633 (638)
-|..++. ++.+.|+++.|+++++...++ ++-|..+...|++.|...|-.
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 9998765 556799999999999999876 888999999999999887743
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-15 Score=158.01 Aligned_cols=441 Identities=12% Similarity=0.074 Sum_probs=275.3
Q ss_pred cccchHHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 006614 101 IDVEINVKIQFFKWAGRRRNFEHNS-TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 101 ~~~~~~~a~~~f~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 179 (638)
..++...|+..|+.+.+.. +.+. .++ .++..+...|+.++|...+++... ..+........++..+...|++++|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred hCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4677889999999887654 3342 344 889999999999999999999872 1233445555557788999999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 180 LSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
+++|+++.+..+. +...+..++..+.+.++.++|++.++++.... |+...+..++..+...++..+|++.++++.+
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d---p~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD---PTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---cchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999998554 57778888899999999999999999998865 6666665555555556777679999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006614 260 NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
.. +.+...+..+...+.+.|-...|.++.++-.+. . +...+.-+ .. +.|.+.. +.+..++.. -
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l-~~-------~~~a~~v----r~a~~~~~~-~ 260 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQL-ER-------DAAAEQV----RMAVLPTRS-E 260 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHH-HH-------HHHHHHH----hhccccccc-c
Confidence 74 346778889999999999999999877653322 1 11111111 00 1111111 111111000 0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC-CCCCChhh-----HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006614 340 NNLINVLGRAGRLEDALKLFNKMEAL-QCKPNVVT-----YNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSIL 413 (638)
Q Consensus 340 ~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~-----~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~l 413 (638)
. . +---.+.|+.-++.+... +..|.... ..-.+.++...++..++ ...++.+...+.+.-..+-..+
T Consensus 261 ~---~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~v-i~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 261 T---E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADL-IKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred h---h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHH-HHHHHHhhhcCCCCCHHHHHHH
Confidence 0 0 000123333333333221 11121111 11222334444444444 5555666655544333455566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----------CCc-
Q 006614 414 IDGFCKTNRVEKAHLLLEEMEEKG-----FPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG-----------CSS- 476 (638)
Q Consensus 414 i~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~- 476 (638)
.++|...++.++|..+++++.... .+++......|.-++...+++++|..+++.+.+... .|+
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 666777777777777776665432 122333345666666677777777777776665211 111
Q ss_pred --HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006614 477 --ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 477 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 554 (638)
...+..++..+...|++.+|.+.++++.... +-|......+...+...|.+.+|.+.++...... +-+..+....+
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~ 491 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQA 491 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHH
Confidence 2234445666777777778887777776653 4566677777777777777888877776665542 22355556666
Q ss_pred HHHHhcCChHHHHHHHHHhhh
Q 006614 555 NGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~m~~ 575 (638)
..+...|++++|..+.+.+.+
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHh
Confidence 777777777777777777765
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-14 Score=132.35 Aligned_cols=445 Identities=15% Similarity=0.173 Sum_probs=227.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--cCCCHH-HHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILG--KAKMVN-KALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+=|.+++. ...|...++--+|+.|.+.|++.++..-..+++.-+ ...++- .-++.|-.|...|-. +..+|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW----- 190 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW----- 190 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc-----
Confidence 34444433 335666666666777766666666655544444322 222221 223344444444322 22233
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
+.|.+.+ ++-+. -+ .+..+|..+|.++|+--..+.|.+++++......+.+..+||.+|.+-.-.
T Consensus 191 ---K~G~vAd---L~~E~---~P--KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~---- 255 (625)
T KOG4422|consen 191 ---KSGAVAD---LLFET---LP--KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS---- 255 (625)
T ss_pred ---ccccHHH---HHHhh---cC--CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----
Confidence 2333322 22221 11 345667777777777777777777777766655566777777776553322
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH-HHHH
Q 006614 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED----AYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLED-ALKL 358 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~ 358 (638)
...+++.+|......||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..+
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 225666777777777777777777777777776554 34566666667777777777777776666665533 3334
Q ss_pred HHHHHH----CCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHhC----CCCCC---HHHHHHHHHHHHhcCCH
Q 006614 359 FNKMEA----LQCKP----NVVTYNTVIKSLFESKAPASEASAWFEKMKAN----GVLPS---PFTYSILIDGFCKTNRV 423 (638)
Q Consensus 359 ~~~~~~----~~~~p----~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~----~~~~~---~~~~~~li~~~~~~g~~ 423 (638)
+.++.. ...+| |...|...+..|.+..+..-+ .++....... -+.|+ .+-|..+....|+....
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA-~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELA-YQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHH-HHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 433322 11221 334444555544433333222 4432222211 01122 12344555555666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 424 EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEM 503 (638)
Q Consensus 424 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 503 (638)
+.-...|+.|.-.-.-|+..+...++++....|.++-..+++.++...|..-+......+... |
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~----------------L 478 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILML----------------L 478 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHH----------------H
Confidence 666666666655545555666666666666666666666666666554433222222222222 2
Q ss_pred HhCCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC-C-
Q 006614 504 KKLRCKPDVY---TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSE-I- 578 (638)
Q Consensus 504 ~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~- 578 (638)
......|+.. -+.....-|+ ..-.+.....-.+|.+.. ......+...-.+.+.|..++|.+++..+.+++ -
T Consensus 479 ~~~k~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~i 555 (625)
T KOG4422|consen 479 ARDKLHPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKI 555 (625)
T ss_pred hcCCCCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcC
Confidence 2221222211 1111111111 001111111222333332 334455666667788888888888888875432 2
Q ss_pred --CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006614 579 --KPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 579 --~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 613 (638)
.|......-+++.-.+.++...|...++-|...++
T Consensus 556 p~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 556 PRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 23333333555666677788888888888776554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-14 Score=129.34 Aligned_cols=460 Identities=18% Similarity=0.216 Sum_probs=290.5
Q ss_pred cchHHHHHHHHHhhhCCCCCCCHHHHHHHHHH--HHhcCChH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 006614 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIRC--LDETRMIG-VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 179 (638)
++...+.-+|. .+++.|.+.++.+-..+++. |..+.++. .-|+-|-.|...| ..+..+| +.|++.+
T Consensus 129 ~EvKDs~ilY~-~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vAd- 197 (625)
T KOG4422|consen 129 REVKDSCILYE-RMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVAD- 197 (625)
T ss_pred cccchhHHHHH-HHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHHH-
Confidence 44555666666 44567777777776666653 33333333 2233333333322 2222222 3444433
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 180 LSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
-+|+...+ +..+|.++|.++|+--..++|.++|++....... .+..+||.+|.+-.-. ...+++.+|..
T Consensus 198 -L~~E~~PK-----T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k-v~~~aFN~lI~~~S~~----~~K~Lv~EMis 266 (625)
T KOG4422|consen 198 -LLFETLPK-----TDETVSIMIAGLCKFSSLERARELYKEHRAAKGK-VYREAFNGLIGASSYS----VGKKLVAEMIS 266 (625)
T ss_pred -HHHhhcCC-----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe-eeHHhhhhhhhHHHhh----ccHHHHHHHHH
Confidence 33443332 7889999999999999999999999999876554 8999999998876533 23889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHc----
Q 006614 260 NGLQPTAKIYTTLVSIYFKLGEVEK----ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED-AYGLFMNMLKE---- 330 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~---- 330 (638)
..+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..+..++...
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 9999999999999999999998765 56788999999999999999999999999888754 55555555442
Q ss_pred CCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006614 331 GCKP----DIVLINNLINVLGRAGRLEDALKLFNKMEALQ----CKPN---VVTYNTVIKSLFESKAPASEASAWFEKMK 399 (638)
Q Consensus 331 ~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p~---~~~~~~ll~~~~~~~~~~~~~~~~~~~m~ 399 (638)
..+| |...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|.....+.- ..+++.|.
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~-~~~Y~~lV 425 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT-LKWYEDLV 425 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 2222 44556677788888999999988877664421 1222 12234445555665555544 78889998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHH
Q 006614 400 ANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARV 479 (638)
Q Consensus 400 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 479 (638)
-+-+-|+..+...++++..-.|.++-.-+++.++..-|...+.....-+...+++.. ..|+...
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k----------------~hp~tp~ 489 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK----------------LHPLTPE 489 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC----------------CCCCChH
Confidence 888889999999999999999999999999999998875554444444444444432 1121111
Q ss_pred HHHHHHHHHcc-CCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC----CCHHHHHHH
Q 006614 480 YAVMIKHFGKC-GRLSDAV-DLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCV----PDINSHNII 553 (638)
Q Consensus 480 ~~~li~~~~~~-g~~~~A~-~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~l 553 (638)
-..+-..+.++ -++.++. ..-.+|.+.. -.....+.+.-.+.+.|..++|.+++.-+.+++-+ |......-+
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El 567 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAEL 567 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHH
Confidence 11111111111 0111111 1122334332 33445566666677788888888888877654322 333333345
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 006614 554 LNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAAR 603 (638)
Q Consensus 554 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 603 (638)
++.-....+...|...++-|...+...-...-+.+...|.-+....+|+.
T Consensus 568 ~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls 617 (625)
T KOG4422|consen 568 MDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALS 617 (625)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHh
Confidence 55556677788888888887665432222233344444443333333433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.5e-13 Score=135.32 Aligned_cols=480 Identities=12% Similarity=0.049 Sum_probs=332.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
.......++.+...|++++|.+++.+.++.. +..+..|..|...|-..|+.+++...+-......+. |...|-.+...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladl 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 3455556666777799999999999998864 677889999999999999999999988877776544 77889999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcC
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYT----TLVSIYFKLG 280 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~----~li~~~~~~g 280 (638)
..+.|.+++|.-.|.++++..+ ++...+---...|-+.|+...|..-|.++.....+.|..-+. ..++.+...+
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p--~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANP--SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999876 666666667788889999999999999998864322333232 3455666777
Q ss_pred CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------------------
Q 006614 281 EVEKALGLVQEMKGK-GCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP------------------------- 334 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p------------------------- 334 (638)
+-+.|.+.++..... +-..+...++.++..+.+...++.|......+......+
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 778888888877763 222355677888888999999999988888777622222
Q ss_pred --CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHH
Q 006614 335 --DIVLINNLINVLGRAGRLEDALKLFNKMEALQ--CKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTY 410 (638)
Q Consensus 335 --~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~ 410 (638)
+..++ .+.-++...+..+....+........ ..-+...|.-+..++...++..++ ..++..+.....--+...|
T Consensus 375 s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~A-l~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 375 SYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEA-LRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHH-HHHHHHHhcCccccchhhh
Confidence 22221 22233344444444444555555544 334566778888888888988888 8888888877666677889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH--------cCCCCcHHHHHH
Q 006614 411 SILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE--------YCGCSSARVYAV 482 (638)
Q Consensus 411 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~ 482 (638)
-.+..+|...|.++.|.+.|+..+... |.+..+-.+|...+-+.|+.++|.+.++.+.. ....|+......
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~ 531 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH 531 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence 999999999999999999999998875 77778888888889999999999999988542 233455555566
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCC-----CCC-----------------CHHHHHHHHHHHHHcCChHHHHHHHH----
Q 006614 483 MIKHFGKCGRLSDAVDLFNEMKKLR-----CKP-----------------DVYTYNALMSGMVRAGMIDDAYSLLR---- 536 (638)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~~-----~~p-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~---- 536 (638)
....+...|+.++-+..-..|.... +-| ...+...++.+-.+.++......-..
T Consensus 532 r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~ 611 (895)
T KOG2076|consen 532 RCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTE 611 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhh
Confidence 6677778888777555444443211 111 11122233333333333222111111
Q ss_pred --HHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHhhhCCC--CCCH---HHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 537 --RMEEDGCVPDI--NSHNIILNGLAKSGGPKRAMEIFTKMQHSEI--KPDA---VSYNTILGCLSRAGMFEEAARLMKD 607 (638)
Q Consensus 537 --~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 607 (638)
--...|+..+. ..+.-++.++++.|++++|..+...+..... .++. ..=...+.+....+++..|...++.
T Consensus 612 ~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~ 691 (895)
T KOG2076|consen 612 FRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRS 691 (895)
T ss_pred hhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11112222221 2345577788999999999999998886422 1222 2234566777889999999999999
Q ss_pred HHhC
Q 006614 608 MNAK 611 (638)
Q Consensus 608 m~~~ 611 (638)
|...
T Consensus 692 ~i~~ 695 (895)
T KOG2076|consen 692 VITQ 695 (895)
T ss_pred HHHH
Confidence 8864
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-12 Score=123.87 Aligned_cols=497 Identities=12% Similarity=0.060 Sum_probs=333.8
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006614 106 NVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQ 185 (638)
Q Consensus 106 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 185 (638)
..-.++++.+...- |.++..|...+ ...+.++|..++...++. |+.+...| .+|++..-++.|..++++
T Consensus 363 ~~K~RVlRKALe~i--P~sv~LWKaAV----elE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNk 431 (913)
T KOG0495|consen 363 KNKKRVLRKALEHI--PRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNK 431 (913)
T ss_pred HHHHHHHHHHHHhC--CchHHHHHHHH----hccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHH
Confidence 34466666665433 55667776554 345666688888887773 34444444 345556677888888888
Q ss_pred hhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH----hCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006614 186 IKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMC----NEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
..+. ++.+...|.+-...--.+|+.+....+.++-+ ..|. ..+...|..=...|-..|..--+..+....+..|
T Consensus 432 aRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv-~i~rdqWl~eAe~~e~agsv~TcQAIi~avigig 509 (913)
T KOG0495|consen 432 AREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGV-EINRDQWLKEAEACEDAGSVITCQAIIRAVIGIG 509 (913)
T ss_pred HHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcce-eecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhc
Confidence 8775 45578888777777777888888887777643 3333 3666677777777777788877777777777766
Q ss_pred CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006614 262 LQP--TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 262 ~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
+.- -..||+.-...|.+.+.++-|..+|...++.-+. +...|...+..--..|..++-..+|++....-++ ....|
T Consensus 510 vEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lw 587 (913)
T KOG0495|consen 510 VEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILW 587 (913)
T ss_pred cccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHH
Confidence 543 2457777888888888888888888888776443 5566666666666778888888888888876333 55566
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006614 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 340 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~ 419 (638)
......+...|++..|..++..+.+.... +...|-.-+.....+...+.+ ..+|.+.... .|+...|..-+...--
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~era-R~llakar~~--sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERA-RDLLAKARSI--SGTERVWMKSANLERY 663 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHH-HHHHHHHhcc--CCcchhhHHHhHHHHH
Confidence 66677777788888888888888775532 455666666666666666665 7777776654 5667777666666667
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 006614 420 TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDL 499 (638)
Q Consensus 420 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 499 (638)
.++.++|++++++.++. ++.-...|..+.+.+-+.++++.|.+.|..-.+. ++..+-.|-.+...-.+.|.+-.|..+
T Consensus 664 ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred hhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHH
Confidence 78888888888888776 3666678888888888888888888888776665 455666777777777788888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC
Q 006614 500 FNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIK 579 (638)
Q Consensus 500 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 579 (638)
|++..-.+ +.+...|-..|..-.+.|+.+.|..+..++++. ++.+...|.--|...-+.++-......+++. .
T Consensus 742 ldrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e 814 (913)
T KOG0495|consen 742 LDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----E 814 (913)
T ss_pred HHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----c
Confidence 88877664 456777888888888888888888888777764 3334444544444444444433333333322 2
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccC
Q 006614 580 PDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVD 631 (638)
Q Consensus 580 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 631 (638)
-|+...-++...|....+++.|.++|.+..+.+ +.+.-+|--+.+-..++|
T Consensus 815 ~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 815 HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHG 865 (913)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhC
Confidence 244445555555555556666666666555332 222234444444444444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-15 Score=138.70 Aligned_cols=445 Identities=13% Similarity=0.126 Sum_probs=261.5
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCCHHHHHH
Q 006614 106 NVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG----PSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 106 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
..|+..|+-..+...|+..-..-..+-+++.+.+++..|++.+...+..-.+.+ ..+.+.+...+.+.|+++.|+.
T Consensus 218 ~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dain 297 (840)
T KOG2003|consen 218 AEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAIN 297 (840)
T ss_pred HHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHh
Confidence 567888887777777766656666777889999999999999998887533333 3455666667899999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-----------CCCHHHHHHH-----HHHHHccC
Q 006614 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNC-----------FPDTVTYSAL-----ISAFGKLG 245 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~~~~~l-----~~~~~~~g 245 (638)
-|+...+. .|+..+-..|+-.+..-|+-++..+.|.+|...... .|+....+-- ++-+-+..
T Consensus 298 sfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ 375 (840)
T KOG2003|consen 298 SFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKEN 375 (840)
T ss_pred hHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhh
Confidence 99999887 567776555666666789999999999999865432 1222222221 12222221
Q ss_pred Ch--HHHHHHHHHHHHCCCCCCHH---------------------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 246 RD--ISAIRLFDEMKENGLQPTAK---------------------IYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY 302 (638)
Q Consensus 246 ~~--~~A~~~~~~m~~~g~~~~~~---------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 302 (638)
.. ++++-.-.+++.--+.|+-. .-..-...|.++|+++.|++++.-+.+.+-.....
T Consensus 376 ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~sa 455 (840)
T KOG2003|consen 376 KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASA 455 (840)
T ss_pred hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHH
Confidence 11 11111111111111112210 00111234667788888888877776653322222
Q ss_pred HHHHHH--HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 006614 303 TYTELI--KGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKS 380 (638)
Q Consensus 303 ~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 380 (638)
.-+.|- ..+-...++..|.++-+..+...-. +......-.+.....|++++|.+.|++.......-....||.=+.
T Consensus 456 aa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt- 533 (840)
T KOG2003|consen 456 AANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLT- 533 (840)
T ss_pred HhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhccc-
Confidence 222222 2222234566666666665543211 222322223334456788888888888766432222233333222
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 006614 381 LFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEA 460 (638)
Q Consensus 381 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 460 (638)
+-..|+.+++ ...|-.+..- +.-+......+.+.|-...+..+|++++.+.... +|.|+...+.|.+.|-+.|+-.+
T Consensus 534 ~e~~~~ldea-ld~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 534 AEALGNLDEA-LDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred HHHhcCHHHH-HHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhh
Confidence 2234444444 4444333321 1124455555666666677777777777666554 46667777777777777777777
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHH
Q 006614 461 ANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV-RAGMIDDAYSLLRRME 539 (638)
Q Consensus 461 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~ 539 (638)
|.+.+-+--+. ++.+..+...|...|....-+++|+.+|++..- +.|+..-|..++..|. +.|++.+|.++|+...
T Consensus 611 afq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 611 AFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred hhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 77766655543 556666666677777777777777777776543 3577777776665554 5677777777777766
Q ss_pred HCCCCCCHHHHHHHHHHHHhcC
Q 006614 540 EDGCVPDINSHNIILNGLAKSG 561 (638)
Q Consensus 540 ~~~~~p~~~~~~~l~~~~~~~g 561 (638)
.. ++-|......|++.+...|
T Consensus 688 rk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 688 RK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred Hh-CccchHHHHHHHHHhcccc
Confidence 54 4446666666666665555
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-12 Score=128.33 Aligned_cols=360 Identities=11% Similarity=0.067 Sum_probs=248.7
Q ss_pred cccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 006614 101 IDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKAL 180 (638)
Q Consensus 101 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 180 (638)
++++...|..++.-+.++. +.....|..+..+|-+.|+.+.+...+-.+... .+-|...|..+.....+.|+++.|.
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHH
Confidence 3688899999999888877 667889999999999999999888877665543 3556788999999999999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHH
Q 006614 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTV----TYSALISAFGKLGRDISAIRLFDE 256 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 256 (638)
-.|.+..+..++ +....---+..|-+.|+..+|.+-|.++....+. .|-. .--..++.+...++.+.|++.++.
T Consensus 228 ~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~-~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 228 YCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP-VDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999888533 5555556677888899999999999999886641 2222 223446667777888889999888
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------------------------HHHHH
Q 006614 257 MKEN-GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTY--------------------------TELIK 309 (638)
Q Consensus 257 m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--------------------------~~li~ 309 (638)
.... +-..+...++.++..|.+...++.|......+......+|..-| .-+.-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 7763 22345667888999999999999998888777662222221111 11122
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 006614 310 GLGRAGRVEDAYGLFMNMLKEG--CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAP 387 (638)
Q Consensus 310 ~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 387 (638)
++.+.+..+....+........ +.-++..|..+..+|...|++.+|+.+|..+......-+...|..+-..+...+..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 3333344344444444444444 33456677888888888888888888888887766555666777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHccCCHH
Q 006614 388 ASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEE--------KGFPPCPAAYCSLINGYGKAKRYE 459 (638)
Q Consensus 388 ~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~ 459 (638)
+.| ...++...... +.+...-..|...+.+.|+.++|.+.++.+.. .+.+|+........+.+.+.|+.+
T Consensus 466 e~A-~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 466 EEA-IEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHH-HHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 777 55556655531 22334445566677888888888888887542 234455555555666677777766
Q ss_pred HHHHHHHH
Q 006614 460 AANELFLE 467 (638)
Q Consensus 460 ~A~~~~~~ 467 (638)
+-..+-..
T Consensus 544 ~fi~t~~~ 551 (895)
T KOG2076|consen 544 EFINTAST 551 (895)
T ss_pred HHHHHHHH
Confidence 64444333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.3e-11 Score=117.48 Aligned_cols=454 Identities=12% Similarity=0.038 Sum_probs=239.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH----hhhCCCCCCHHHHHHHHHHHHhcCCHh
Q 006614 137 ETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQ----IKSRKCKPTANTYNSMILMLMQEGYYE 212 (638)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~ 212 (638)
+..-|+.|.+++..+.+. .+.++.+|.+-...--..|+.+...++..+ +...|+..+...|..=...+-..|..-
T Consensus 418 rLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~ 496 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVI 496 (913)
T ss_pred HHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChh
Confidence 334455555665555443 455555665555555555655555555433 233455556666655555555556655
Q ss_pred HHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006614 213 KIHELYNEMCNEGNCFPD-TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 213 ~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
.+..+....+..|....| ..||..-...|.+.+.++-|..+|....+- ++-+...|...+..--..|..+.-..+|++
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 555555555544432122 235555555566666666666666655553 223445555555555555566666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCh
Q 006614 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNV 371 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 371 (638)
....-+ .....|......+-..|++..|..++.+..+..+. +...|-.-+.....+.+++.|..+|.+....+ |+.
T Consensus 576 av~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~s--gTe 651 (913)
T KOG0495|consen 576 AVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSIS--GTE 651 (913)
T ss_pred HHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccC--Ccc
Confidence 555422 23444445555555556666666666666555433 45555555555566666666666666555432 444
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006614 372 VTYNTVIKSLFESKAPASEASAWFEKMKANGVLPS-PFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLIN 450 (638)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 450 (638)
..|.--+....-.+..+++ .+++++..+. -|+ ...|..+.+.+-+.++.+.|.+.|..-.+. +|.....|..+..
T Consensus 652 Rv~mKs~~~er~ld~~eeA-~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLak 727 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEA-LRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAK 727 (913)
T ss_pred hhhHHHhHHHHHhhhHHHH-HHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHH
Confidence 4444333333333333333 4444444443 233 234555555666666666666666554443 2444455555555
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 006614 451 GYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDD 530 (638)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 530 (638)
.--+.|++-.|..+++...-. .+.+...|-..|.+-.+.|..+.|..+..+..+. ++.+...|..-|...-+.++-..
T Consensus 728 leEk~~~~~rAR~ildrarlk-NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLK-NPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhc-CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchH
Confidence 555666666666666665554 3345556666666666666666666666555543 23334445444444433343222
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 531 AYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 531 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
....+++ +..|+.....+...+....++++|.+.|.+.+..+ || -.+|.-+..-+.+.|.-++-.++++...
T Consensus 806 s~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 806 SIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 2222222 23355555555566666666666666666666432 22 3455555555566665555555555554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-11 Score=115.95 Aligned_cols=438 Identities=12% Similarity=0.072 Sum_probs=318.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
..|......-..++++..|..+|++.+.... .+...|.-.+..-+++.+++.|..+++.....-+ .-...|-..+..
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP--RVdqlWyKY~ym 150 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP--RVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc--hHHHHHHHHHHH
Confidence 3444444444556778888888888887653 3777788888888899999999999999888653 223345555555
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006614 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 320 (638)
--..|++..|.++|+...+ ..|+...|++.|..-.+.+..+.|..+++...-. .|++.+|.-...--.+.|.+..|
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHH
Confidence 5567899999999999887 4799999999999999999999999999988764 58899998888888889999999
Q ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChH---HHHH--
Q 006614 321 YGLFMNMLKEGC--KPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN-VVTYNTVIKSLFESKAPA---SEAS-- 392 (638)
Q Consensus 321 ~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~---~~~~-- 392 (638)
..+|+...+.-- .-+...+.+....-.++..++.|.-+|+-..+.-.+-. ...|..+...--+-|+.. +++.
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 999988876411 11233555555555667888889888888876432211 223333333222333322 2111
Q ss_pred --HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHH---HccCCHHH
Q 006614 393 --AWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA-------AYCSLINGY---GKAKRYEA 460 (638)
Q Consensus 393 --~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~---~~~g~~~~ 460 (638)
--++.+...+ +-|-.+|--.++.-...|+.+...++|+..+.. +||-.. .|.-+--++ ....+.+.
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 1123333322 456777888888888889999999999999876 455322 121111111 24678999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHH----HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 006614 461 ANELFLELKEYCGCSSARVYAV----MIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLR 536 (638)
Q Consensus 461 A~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 536 (638)
+.++|+...+. ++....++.- ....-.++.++..|.+++..... ..|...++...|..-.+.++++....+++
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999884 5555555444 34445578899999999988764 56889999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 537 RMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSE-IKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAK 611 (638)
Q Consensus 537 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 611 (638)
+.++-+.. |..+|......=...|+.+.|..+|+-.++.. +......|.+.|+--...|.++.|..+++++++.
T Consensus 462 kfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 462 KFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 99997633 78888888888889999999999999998753 2334567888888888999999999999999864
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8e-11 Score=110.55 Aligned_cols=458 Identities=12% Similarity=0.091 Sum_probs=339.6
Q ss_pred cccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 006614 101 IDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKAL 180 (638)
Q Consensus 101 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 180 (638)
.+.+...|..+|..+.... ..+...|..-+..=.++.+...|..+++..+.. .|.-...|...+.+--..|++..|.
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccHHHH
Confidence 3556788899998776544 446778999999999999999999999998874 2222345666667777789999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
++|++-.+. .|+...|++.|..-.+-+..+.|..+|++..-.. |++.+|-.....-.+.|.+..|..+++...+.
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~H---P~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVH---PKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec---ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 999998775 8999999999999999999999999999998744 99999999999999999999999999998864
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC---HHHHHH-----HHHHHHH
Q 006614 261 -GL-QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT-VYTYTELIKGLGRAGR---VEDAYG-----LFMNMLK 329 (638)
Q Consensus 261 -g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~---~~~A~~-----~~~~~~~ 329 (638)
|- ..+...+.+....-.++..++.|.-+|+-.+++=+.-. ...|..+...--+-|+ +++++- -|+.+++
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 10 11334566666666678889999999988887633211 3344444433334454 333332 3555566
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHH--------HHHhcCChHHHHHHHHHHHH
Q 006614 330 EGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNV--VTYNTVIK--------SLFESKAPASEASAWFEKMK 399 (638)
Q Consensus 330 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~--------~~~~~~~~~~~~~~~~~~m~ 399 (638)
.++. |-.+|-..++.-...|+.+...++|++.... ++|-. ..|...|. .-....+.+.. .++++...
T Consensus 317 ~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert-r~vyq~~l 393 (677)
T KOG1915|consen 317 KNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT-RQVYQACL 393 (677)
T ss_pred hCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHH
Confidence 5544 7778888888888889999999999999873 44421 12222221 11233444444 77777777
Q ss_pred hCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 006614 400 ANGVLPSPFTYSILIDGFC----KTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCS 475 (638)
Q Consensus 400 ~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 475 (638)
+ -++...+||..+.-.|+ ++.++..|.+++-..+. ..|...++...|..-.+.+++|.+..++++..+. .+.
T Consensus 394 ~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~-~Pe 469 (677)
T KOG1915|consen 394 D-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF-SPE 469 (677)
T ss_pred h-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc-ChH
Confidence 6 35556778877666655 57889999999988774 4788899999999999999999999999999986 445
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006614 476 SARVYAVMIKHFGKCGRLSDAVDLFNEMKKLR-CKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 554 (638)
+..+|......-...|+.+.|..+|+-..+.. .......|.+.|+.-...|.++.|..+++++++.. +...+|-++.
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA 547 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFA 547 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHH
Confidence 67888888888888999999999999887642 12235567777777778999999999999999863 3444665554
Q ss_pred HHHH-----hcC-----------ChHHHHHHHHHhhh
Q 006614 555 NGLA-----KSG-----------GPKRAMEIFTKMQH 575 (638)
Q Consensus 555 ~~~~-----~~g-----------~~~~A~~~~~~m~~ 575 (638)
..-. +.| ....|..+|++...
T Consensus 548 ~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 548 KFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 4322 333 56678888888754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-11 Score=113.92 Aligned_cols=383 Identities=14% Similarity=0.080 Sum_probs=277.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--H
Q 006614 229 PDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT--E 306 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~ 306 (638)
.|...+-.....+.+.|..+.|+..|...... .+-.-..|..|.... .+.+.+ ..... |...|..... .
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~----~~l~~-~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEIL----SILVV-GLPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHH----HHHHh-cCcccchHHHHHH
Confidence 55555555566667788888899888887764 122333343333322 222222 22221 1111222221 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhc
Q 006614 307 LIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQC--KPNVVTYNTVIKSLFES 384 (638)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~ 384 (638)
+..++-...+.+++..-.+.....|.+-+...-+....+.....|+++|..+|+++.+... --|..+|..++..- .
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--N 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--h
Confidence 3456666778889999999999888876666666666777788999999999999988642 12556666665332 2
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006614 385 KAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANEL 464 (638)
Q Consensus 385 ~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 464 (638)
.+.. ..++.+-...--+--+.|..++.+.|.-.++.++|...|+...+.+ +....+|+.+..-|....+...|.+.
T Consensus 311 ~~sk---Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 311 DKSK---LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhHH---HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 2111 1122211111112345678888899999999999999999999987 77788999999999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 006614 465 FLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCV 544 (638)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 544 (638)
++.+.+. .+.|-..|-.|.++|.-.+.+.-|+-.|++..+.. +.|...|.+|..+|.+.++.++|+..|+.....|-
T Consensus 387 YRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d- 463 (559)
T KOG1155|consen 387 YRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD- 463 (559)
T ss_pred HHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-
Confidence 9999997 56788999999999999999999999999998864 55789999999999999999999999999998763
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhh----CCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 545 PDINSHNIILNGLAKSGGPKRAMEIFTKMQH----SEIKPD--AVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQI 618 (638)
Q Consensus 545 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 618 (638)
.+...+..|...+-+.++..+|..+|++-++ .|...+ .....-|..-+.+.+++++|..+....... .+...
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~e 541 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECE 541 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHH
Confidence 3678899999999999999999999998765 233322 222233567778899999999877766633 66667
Q ss_pred hHHHHHHHHhccC
Q 006614 619 TYSSILEAVGKVD 631 (638)
Q Consensus 619 ~~~~l~~~~~~~g 631 (638)
--+.|++.+.+..
T Consensus 542 eak~LlReir~~~ 554 (559)
T KOG1155|consen 542 EAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHHHHhc
Confidence 7778888776643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-11 Score=116.84 Aligned_cols=423 Identities=13% Similarity=0.024 Sum_probs=245.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG-PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
.+....+-+.++|.+++|++.|...+. +.|+ +..|.....+|...|++++..+.-.+.++.++. -+..+..-..++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAH 193 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHH
Confidence 445556677889999999999999888 5677 777888888889999999999988888877432 344566667777
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHhcCCH
Q 006614 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE-NG--LQPTAKIYTTLVSIYFKLGEV 282 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g--~~~~~~~~~~li~~~~~~g~~ 282 (638)
-..|++++|+.-..-..-.+.. .|..+--.+=+.+-+ .|....++-.+ ++ +-|......+....+-..-
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F-~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~-- 265 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGF-QNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP-- 265 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhc-ccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc--
Confidence 7788888776543333222211 111111111111111 12222222222 21 2233333333222221100
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHc---CCCC---C------HHHHHHHHHHHHcc
Q 006614 283 EKALGLVQEMKGKGCALTVYTYTELIKGLGR-AGRVEDAYGLFMNMLKE---GCKP---D------IVLINNLINVLGRA 349 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~---~~~p---~------~~~~~~li~~~~~~ 349 (638)
...+...+..-|...-..+-..+.. ...+..|...+.+-... .... | ..+.......+.-.
T Consensus 266 ------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 266 ------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred ------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 0000000000010000000000000 01222333332222110 0000 1 11222222233446
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006614 350 GRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLL 429 (638)
Q Consensus 350 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 429 (638)
|+.-.|..-|+..++....++.. |--+-..|....+..+. +..|....+-+ +-|+.+|..-.+.+.-.+++++|..=
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~-~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKM-WKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred CCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHH-HHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 78888888888888765443332 44444455555555555 77777766653 33556677667777778888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006614 430 LEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCK 509 (638)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 509 (638)
|++.++.. |.+...|..+.-+..+.++++++...|++.++. ++..+..|+.....+...++++.|.+.|+...+..
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE-- 492 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE-- 492 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc--
Confidence 88888775 666677777777777888888888888888886 66778888888888888888888888888877652
Q ss_pred CC-------HHHH--HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 510 PD-------VYTY--NALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 510 p~-------~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
|+ ..++ ..++ .+--.+++..|.+++.+..+...+ ....|..|...-.+.|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 32 1111 1111 111347888888888888876432 356778888888888888888888888654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-11 Score=122.63 Aligned_cols=289 Identities=10% Similarity=0.027 Sum_probs=131.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHH--HHHHHHHHhcCCHhHH
Q 006614 138 TRMIGVMWKSIQDMVRSTCVMGPSVLSEI-VNILGKAKMVNKALSIFYQIKSRKCKPTANTY--NSMILMLMQEGYYEKI 214 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A 214 (638)
.|+++.|.+.+....+. .+++..+..+ ..+..+.|+++.|...|.++.+. .|+.... ......+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~--~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH--AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 46666666555543332 1223333222 22235556666666666665554 2232211 1224455556666666
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006614 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 294 (638)
.+.++++.+..+ .+...+..+...|.+.|++++|.+++..+.+.+..++ .....+-
T Consensus 173 l~~l~~~~~~~P--~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~-~~~~~l~--------------------- 228 (398)
T PRK10747 173 RHGVDKLLEVAP--RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE-EHRAMLE--------------------- 228 (398)
T ss_pred HHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH-HHHHHHH---------------------
Confidence 666666655543 3445555555555555555555555555555432211 1111000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhH
Q 006614 295 KGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTY 374 (638)
Q Consensus 295 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 374 (638)
..+|..++.......+.+...++++.+.+. .+.+......+...+...|+.++|.+++++..+.. |+...
T Consensus 229 ------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l- 298 (398)
T PRK10747 229 ------QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL- 298 (398)
T ss_pred ------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH-
Confidence 012222222222333344444444444332 12355555566666666666666666665554421 22210
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006614 375 NTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGK 454 (638)
Q Consensus 375 ~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 454 (638)
.++.+.+..++..++ ....+...+.. +-|...+..+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+
T Consensus 299 -~~l~~~l~~~~~~~a-l~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~ 373 (398)
T PRK10747 299 -VLLIPRLKTNNPEQL-EKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDR 373 (398)
T ss_pred -HHHHhhccCCChHHH-HHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH
Confidence 011111122222222 22222222221 223344445555555566666666666655554 3555555555555555
Q ss_pred cCCHHHHHHHHHHHH
Q 006614 455 AKRYEAANELFLELK 469 (638)
Q Consensus 455 ~g~~~~A~~~~~~~~ 469 (638)
.|+.++|.+++.+..
T Consensus 374 ~g~~~~A~~~~~~~l 388 (398)
T PRK10747 374 LHKPEEAAAMRRDGL 388 (398)
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555555443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-10 Score=108.64 Aligned_cols=383 Identities=15% Similarity=0.112 Sum_probs=251.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHH
Q 006614 190 KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIY 269 (638)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 269 (638)
+..-|...+-.....+-+.|....|++.|.......+ ..|.+++....-.-+.+.+..+ .. |.+.|....
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P-----~~W~AWleL~~lit~~e~~~~l----~~-~l~~~~h~M 228 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP-----WFWSAWLELSELITDIEILSIL----VV-GLPSDMHWM 228 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC-----cchHHHHHHHHhhchHHHHHHH----Hh-cCcccchHH
Confidence 4444666666666667788888999998888877543 2344443333222222222222 21 112121111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHH
Q 006614 270 --TTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK--PDIVLINNLINV 345 (638)
Q Consensus 270 --~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~ 345 (638)
--+..++-...+.+++..-.+.....|.+-+...-+....+.-...++++|+.+|+++.+..+- -|..+|..++..
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 1234555566677888888888887777655555555555666788889999999988887432 255667666544
Q ss_pred HHccCCHHH-HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 346 LGRAGRLED-ALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVE 424 (638)
Q Consensus 346 ~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 424 (638)
--...++.- |..++ .+-+ .+ +.|...+-+-|.-.++.+.+ ..+|+...+-+ +.....|+.+.+-|....+..
T Consensus 309 ~~~~skLs~LA~~v~-~idK--yR--~ETCCiIaNYYSlr~eHEKA-v~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~ 381 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVS-NIDK--YR--PETCCIIANYYSLRSEHEKA-VMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTH 381 (559)
T ss_pred HhhhHHHHHHHHHHH-Hhcc--CC--ccceeeehhHHHHHHhHHHH-HHHHHHHHhcC-cchhHHHHHhhHHHHHhcccH
Confidence 322222211 11111 1111 22 22333333333334444444 77788777654 334567888888999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 425 KAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMK 504 (638)
Q Consensus 425 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (638)
.|++-++..++.+ |.|-.+|..|.++|.-.+-..-|+-.|++.... .+.|..+|.+|..+|.+.+++++|+..|....
T Consensus 382 AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai 459 (559)
T KOG1155|consen 382 AAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAI 459 (559)
T ss_pred HHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999999886 888899999999999999999999999999886 56789999999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006614 505 KLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED----GCVPD--INSHNIILNGLAKSGGPKRAMEIFTKMQHSEI 578 (638)
Q Consensus 505 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 578 (638)
..| ..+...+..|...|-+.++.++|...|.+.++. |...+ .....-|..-+.+.+++++|..+.......
T Consensus 460 ~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-- 536 (559)
T KOG1155|consen 460 LLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-- 536 (559)
T ss_pred hcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--
Confidence 876 335678999999999999999999999887762 33322 122222445566777777776655544321
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 579 KPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 579 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.-..++|..+++++++
T Consensus 537 ----------------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 537 ----------------ETECEEAKALLREIRK 552 (559)
T ss_pred ----------------CchHHHHHHHHHHHHH
Confidence 2234666677766654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-11 Score=123.78 Aligned_cols=287 Identities=14% Similarity=0.135 Sum_probs=131.9
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFPDTV-TYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYT--TLVSIYFKLGEVEK 284 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~ 284 (638)
.|++++|.+......+.. ++.. .|.....+..+.|+++.|.+.++++.+. .|+..... .....+...|++++
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 577777776666544432 1122 2222233335666666666666666553 23332221 23455556666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHHHH
Q 006614 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLI-NVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~~~ 363 (638)
|.+.++++.+..+. +...+..+...|.+.|++++|..++..+.+.+..++ .....+- .+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~-~~~~~l~~~a------------------ 231 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE-EHRAMLEQQA------------------ 231 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHH------------------
Confidence 66666666555433 455555556666666666666666666655543311 1111000 00
Q ss_pred HCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 364 ALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA 443 (638)
Q Consensus 364 ~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 443 (638)
|..++.......+ .+....+++.+... .+.++.....+...+...|+.++|..++++..+. ++++.
T Consensus 232 ----------~~~l~~~~~~~~~-~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~ 297 (398)
T PRK10747 232 ----------WIGLMDQAMADQG-SEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER 297 (398)
T ss_pred ----------HHHHHHHHHHhcC-HHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence 0000000000000 11111222222111 1234445555556666666666666666665553 33332
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006614 444 AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV 523 (638)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 523 (638)
.. ++.+....++.+++.+..+...+. .+.|...+..+...+.+.+++++|.+.|+...+. .|+..++..+...+.
T Consensus 298 l~--~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~ 372 (398)
T PRK10747 298 LV--LLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALD 372 (398)
T ss_pred HH--HHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHH
Confidence 11 122222335555555555555443 3344444445555555555555555555555443 355555445555555
Q ss_pred HcCChHHHHHHHHHH
Q 006614 524 RAGMIDDAYSLLRRM 538 (638)
Q Consensus 524 ~~g~~~~A~~~~~~m 538 (638)
+.|+.++|.+++++.
T Consensus 373 ~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 373 RLHKPEEAAAMRRDG 387 (398)
T ss_pred HcCCHHHHHHHHHHH
Confidence 555555555555444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-10 Score=110.79 Aligned_cols=289 Identities=11% Similarity=0.062 Sum_probs=218.3
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 006614 332 CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYS 411 (638)
Q Consensus 332 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 411 (638)
..-+......-.+-+...+++.+..++.+...+.. ++....+-.-|..+...|+...- ..+-..+.+. .+....+|-
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~L-f~lsh~LV~~-yP~~a~sW~ 316 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKL-FLLSHKLVDL-YPSKALSWF 316 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchH-HHHHHHHHHh-CCCCCcchh
Confidence 33456666667777888899999999999887743 34555666667777777776554 4444555544 355678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC
Q 006614 412 ILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCG 491 (638)
Q Consensus 412 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 491 (638)
++.-.|...|+.++|.+.|.+....+ +.-...|..+...|+-.|..|+|...+..+.+.- +-...-+--+.--|.+.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhc
Confidence 99988889999999999999887765 4456688889999999999999999998887741 111112233445677889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhcCChHH
Q 006614 492 RLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED--GCV----PDINSHNIILNGLAKSGGPKR 565 (638)
Q Consensus 492 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~----p~~~~~~~l~~~~~~~g~~~~ 565 (638)
..+-|.++|.+..... +-|...++-+.-.....+.+.+|..+|+..+.. .+. --..+++.|.++|.+.+++++
T Consensus 395 n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 9999999999887652 456777777777777788999999999988732 011 124568889999999999999
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhc
Q 006614 566 AMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGK 629 (638)
Q Consensus 566 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 629 (638)
|+..+++..... +-|..++.++.-.|...|+++.|.+.|.+.+ .+.||..+.+.++..+..
T Consensus 474 AI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 474 AIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 999999988753 3478889999989999999999999999988 678999888888776544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-11 Score=124.55 Aligned_cols=292 Identities=14% Similarity=0.065 Sum_probs=151.4
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 006614 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA--KIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~ 283 (638)
...|+++.|.+.+.+..+..+ -....+-....+....|+.+.|.+.+++..+.. |+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~--~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAA--EPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 457788888887777666442 123334444566666777777777777766542 333 23333466666777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHH
Q 006614 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLIN-VLGRAGRLEDALKLFNKM 362 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~~ 362 (638)
.|.+.++.+.+..+. +...+..+...+...|++++|.+.+..+.+.+.. +...+..+-. .+ .+ .++.
T Consensus 171 ~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~--~~-------~l~~- 238 (409)
T TIGR00540 171 AARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE--IG-------LLDE- 238 (409)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH--HH-------HHHH-
Confidence 777777777766543 5556666677777777777777777777766533 2222211110 00 00 0000
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006614 363 EALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG---VLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFP 439 (638)
Q Consensus 363 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (638)
+...+. ...+..+.... .+.+...+..+...+...|+.++|.+++++..+.. +
T Consensus 239 ----------------------~~~~~~-~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-p 294 (409)
T TIGR00540 239 ----------------------AMADEG-IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-G 294 (409)
T ss_pred ----------------------HHHhcC-HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-C
Confidence 000000 11111111111 11356667777777888888888888888877764 2
Q ss_pred CCHHHHHHHHH--HHHccCCHHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006614 440 PCPAAYCSLIN--GYGKAKRYEAANELFLELKEYCGCSSA--RVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTY 515 (638)
Q Consensus 440 ~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 515 (638)
.+......++. .....++.+.+.+.++...+. .+.|. ....++...+.+.|++++|.+.|+........|+...+
T Consensus 295 d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~ 373 (409)
T TIGR00540 295 DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL 373 (409)
T ss_pred CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH
Confidence 22211100111 112234555555555555443 22233 44445555555555555555555532222224555555
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH
Q 006614 516 NALMSGMVRAGMIDDAYSLLRRM 538 (638)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~m 538 (638)
..+...+.+.|+.++|.++|++.
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555555543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.9e-12 Score=111.37 Aligned_cols=301 Identities=12% Similarity=0.120 Sum_probs=222.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCC-CCC--CHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRK-CKP--TANTYNSMI 202 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~ 202 (638)
..|..-++.+. .++.+.|.+.|.+|++.. +.+..+.-++.+.|-+.|.++.|+++.+.+.++. ... .......|.
T Consensus 37 r~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 37 RDYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred HHHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 45555555443 578899999999998843 4556677889999999999999999999998762 111 122345567
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHh
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA----KIYTTLVSIYFK 278 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~ 278 (638)
.-|...|-+++|.++|..+.+.+. --......|+..|-...++++|+++-+++.+.|-++.. ..|.-|...+..
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~e--fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEGE--FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcchh--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 778899999999999999988654 45667888999999999999999999988887644432 245566667777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006614 279 LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKL 358 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 358 (638)
..+.+.|..++.+..+.+.+ .+..-..+.+.....|+++.|.+.++...+.++.--..+...|..+|.+.|+.++....
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 193 SSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 88899999999999887654 55566677888999999999999999999987666667888899999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 006614 359 FNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT---NRVEKAHLLLEEMEE 435 (638)
Q Consensus 359 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~ 435 (638)
+..+.+.. ++...-..+-.......+...+...+.+++.. .|+...+..+++..... |...+...+++.|..
T Consensus 272 L~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 272 LRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 99987754 44444444444444455555554444455554 48888888888765533 345555666666654
Q ss_pred C
Q 006614 436 K 436 (638)
Q Consensus 436 ~ 436 (638)
.
T Consensus 347 e 347 (389)
T COG2956 347 E 347 (389)
T ss_pred H
Confidence 3
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-11 Score=122.68 Aligned_cols=287 Identities=11% Similarity=0.012 Sum_probs=129.6
Q ss_pred CCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHH
Q 006614 173 AKMVNKALSIFYQIKSRKCKPT-ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAI 251 (638)
Q Consensus 173 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 251 (638)
.|+++.|.+.+.+..+.. |+ ...+-....+..+.|++++|.+.+++..+..+. ++..........+...|+++.|.
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~-~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN-DNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-CchHHHHHHHHHHHHCCCHHHHH
Confidence 455555555554444432 22 222223334444555555555555555443211 11122222344444555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HH---HHHHHhcCCHHHHHHHHHHH
Q 006614 252 RLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT-EL---IKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 252 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~l---i~~~~~~g~~~~A~~~~~~~ 327 (638)
+.++.+.+.. +-+..++..+...+...|++++|.+.+..+.+.+.. +...+. .- ..+....+..+++...+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5555555543 224444555555555555555555555555554432 222221 00 11112222222223333333
Q ss_pred HHcCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhH--HHHHH-HHHhcCChHHHHHHHHHHHHhC
Q 006614 328 LKEGCK---PDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTY--NTVIK-SLFESKAPASEASAWFEKMKAN 401 (638)
Q Consensus 328 ~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~ll~-~~~~~~~~~~~~~~~~~~m~~~ 401 (638)
.+..+. .+...+..++..+...|+.++|.+++++..+.. ||.... ..+.. .....++. ......++...+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~-~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDN-EKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCCh-HHHHHHHHHHHHh
Confidence 333221 256666667777777777777777777776643 332210 11111 11111222 2223333333322
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 402 GVLPSP--FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLEL 468 (638)
Q Consensus 402 ~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 468 (638)
. +-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 1122 3344555556666666666666663322222455555556666666666666666666554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-14 Score=136.99 Aligned_cols=258 Identities=19% Similarity=0.173 Sum_probs=55.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006614 272 LVSIYFKLGEVEKALGLVQEMKGKG-CALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 350 (638)
+...+.+.|++++|++++++..... .+.+...|..+.......+++++|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3445555555555555554333222 1223333344444444555555555555555544332 33344444444 4555
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006614 351 RLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKAN-GVLPSPFTYSILIDGFCKTNRVEKAHLL 429 (638)
Q Consensus 351 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~ 429 (638)
++++|.+++....+.. ++...+...+..+...++...+ ..+++.+... ..+.+...|..+...+.+.|+.++|+..
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEA-EELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp ----------------------------H-HHHTT-HHHH-HHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHH-HHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555544432211 1222222222222222222222 2222222111 1123344444445555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006614 430 LEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCK 509 (638)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 509 (638)
+++..+.. |.++.....++..+...|+.+++.+++....+.. +.+...+..+..+|...|+.++|+..|++..+.. +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 55555443 3344445555555555555555444444444431 2333344444444444444444444444444321 2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 006614 510 PDVYTYNALMSGMVRAGMIDDAYSLLRR 537 (638)
Q Consensus 510 p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (638)
.|......+..++...|+.++|.++.++
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp T-HHHHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 2333444444444444444444444443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.9e-11 Score=111.53 Aligned_cols=420 Identities=15% Similarity=0.079 Sum_probs=263.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006614 166 IVNILGKAKMVNKALSIFYQIKSRKCKPT-ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
..+-|.+.|++++|++.|.+..+. .|+ +.-|....-.|...|+++++.+.-.+.++.++ .-+..+..-.+++-+.
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P--~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNP--DYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc--HHHHHHHHHHHHHHhh
Confidence 447788999999999999999987 566 78888999999999999999999999988764 3455667777788888
Q ss_pred CChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 006614 245 GRDISAIRLFDEMKE-NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG-KG--CALTVYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 245 g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~--~~~~~~~~~~li~~~~~~g~~~~A 320 (638)
|++++|+.=..-..- .|+. |..+- .+++-..+ ..|.....+-.. .+ +-|+.....+....+-..-.
T Consensus 197 g~~~eal~D~tv~ci~~~F~-n~s~~-~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~---- 266 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQ-NASIE-PMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK---- 266 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcc-cchhH-HHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc----
Confidence 888887653322211 1111 11111 11111111 112222222222 12 23444333333332211000
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHC-CCCCChh---------hHHHHHH--HHHhcCCh
Q 006614 321 YGLFMNMLKEGCKPDIVLINNLINVLGRA-GRLEDALKLFNKMEAL-QCKPNVV---------TYNTVIK--SLFESKAP 387 (638)
Q Consensus 321 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~-~~~p~~~---------~~~~ll~--~~~~~~~~ 387 (638)
..+...+...|...-..+-..+... ..+..|...+.+-... ...++.. .-..++. .++-.|+.
T Consensus 267 ----~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~ 342 (606)
T KOG0547|consen 267 ----PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS 342 (606)
T ss_pred ----ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence 0000000001111111111111110 1122222222211000 0001100 0111111 12344666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 388 ASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLE 467 (638)
Q Consensus 388 ~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 467 (638)
..+ ..-|+..+.....++ ..|-.+...|...++.++....|++....+ +.++.+|..-.+.+.-.+++++|..-|++
T Consensus 343 ~~a-~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 343 LGA-QEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred hhh-hhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 665 666777776643333 237777788999999999999999999987 78889999999999999999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC---
Q 006614 468 LKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCV--- 544 (638)
Q Consensus 468 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--- 544 (638)
.+.. .+.+...|-.+.-+..+.+++++++..|++.++. ++.-...|+.....+...+++++|.+.|+..++....
T Consensus 420 ai~L-~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 420 AISL-DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred Hhhc-ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 9986 4456777878888888999999999999999876 4556788999999999999999999999999874211
Q ss_pred --CCHHHH--HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 545 --PDINSH--NIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 545 --p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.+..++ -.++. +.-.+++..|.+++++..+...+ ....|.+|...-.+.|+.++|+++|++...
T Consensus 498 ~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 122221 11111 12348999999999999865322 346788999999999999999999998653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-10 Score=104.22 Aligned_cols=454 Identities=12% Similarity=0.070 Sum_probs=274.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (638)
+.-+..++++..|+.+++--...+-.....+-.-+..++.+.|++++|..+|.-+... -.++...+-.+...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 4455566777777777765544332222233344556677888999999988887764 355667777777777778888
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006614 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
.+|..+-.+.. .+...-..+++..-+.++-++-..+.+.+.+ ...---+|.......-.+.+|++++..
T Consensus 108 ~eA~~~~~ka~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 108 IEAKSIAEKAP------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHhhCC------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 88887765542 2333444555666677888777777777654 223344556665566678889999988
Q ss_pred HHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 006614 292 MKGKGCALTVYTYTEL-IKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN 370 (638)
Q Consensus 292 m~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 370 (638)
....+ |+-...|.. .-+|.+..-++-+.++++--++. ++.+....|..+....+.=.-..|..-.+.+.+.+-.
T Consensus 177 vL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-- 251 (557)
T KOG3785|consen 177 VLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-- 251 (557)
T ss_pred HHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc--
Confidence 88763 344444433 34566777778787777777665 2223444454444333332222233333333322110
Q ss_pred hhhHHHHHHHHHhcC-----ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006614 371 VVTYNTVIKSLFESK-----APASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAY 445 (638)
Q Consensus 371 ~~~~~~ll~~~~~~~-----~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 445 (638)
. -..+.-+++.+ +-+.+ .+++-.+.+. .| ..-..++-.|.+.+++.+|..+.+++. |.++.-|
T Consensus 252 ~---~~f~~~l~rHNLVvFrngEgA-LqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~Ey 319 (557)
T KOG3785|consen 252 E---YPFIEYLCRHNLVVFRNGEGA-LQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEY 319 (557)
T ss_pred c---chhHHHHHHcCeEEEeCCccH-HHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHH
Confidence 0 11122222221 11222 3333333222 12 233345666889999999999887764 3333333
Q ss_pred HHHHHHHHc-------cCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006614 446 CSLINGYGK-------AKRYEAANELFLELKEYCGCSSAR-VYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNA 517 (638)
Q Consensus 446 ~~li~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 517 (638)
..-.-.+.. .....-|...|+..-+.+...|.. --.++..++.-..++++.+..++.+...-...|...+|
T Consensus 320 ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N- 398 (557)
T KOG3785|consen 320 ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN- 398 (557)
T ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-
Confidence 322222233 334566677776665554443322 23456666677778899999999888765455555555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHcc
Q 006614 518 LMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHN-IILNGLAKSGGPKRAMEIFTKMQHSEIKPDA-VSYNTILGCLSRA 595 (638)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~ 595 (638)
+..+++..|++.+|.++|-......++ |..+|. .|.++|.+.++++-|++++-++... .+. .....+...|.+.
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHH
Confidence 678899999999999999877765444 555655 4567888999999998888777532 222 3344566788899
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHH
Q 006614 596 GMFEEAARLMKDMNAKGFEYDQITYS 621 (638)
Q Consensus 596 g~~~~A~~~~~~m~~~~~~p~~~~~~ 621 (638)
+.+--|.+.|+.+.. ..|++.-|.
T Consensus 475 ~eFyyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred HHHHHHHHhhhHHHc--cCCCccccC
Confidence 998888888888874 456665553
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-08 Score=99.22 Aligned_cols=402 Identities=12% Similarity=0.175 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVM--GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
..|..-+..+.++|+...-...|+..++. .+. ...+|...+......|-++.+..+|++..+. ++..-+-.+.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALra-LpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRA-LPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHh-CchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 35555555666666666666666655543 121 2245555555555566666666666665554 3444455555
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCC-----------------------------------------CCC--HHHHHHHHHH
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNC-----------------------------------------FPD--TVTYSALISA 240 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~-----------------------------------------~~~--~~~~~~l~~~ 240 (638)
.+++.+++++|.+.+...+..... .+| ...|.+|.+.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 556666666655555544322100 022 1347788888
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CC------HHHHHHHHHHHHhCCC-
Q 006614 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL----------------GE------VEKALGLVQEMKGKGC- 297 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------------g~------~~~A~~~~~~m~~~~~- 297 (638)
|.+.|.+++|..++++.+..- .++.-|..+.+.|+.- |+ ++-...-|+.+...++
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 888888888888888877642 2344444444444321 11 1222223333332210
Q ss_pred ----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 298 ----------ALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP------DIVLINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 298 ----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~ 361 (638)
+.++..|..-+ -+..|+..+-...|.+.++. +.| -...|..+...|-..|+++.|..+|++
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 01233333322 22345666667777777654 111 234567777778888888888888887
Q ss_pred HHHCCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-----------------CCHHHHHHHHHHHHhcC
Q 006614 362 MEALQCKPN---VVTYNTVIKSLFESKAPASEASAWFEKMKANGVL-----------------PSPFTYSILIDGFCKTN 421 (638)
Q Consensus 362 ~~~~~~~p~---~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~-----------------~~~~~~~~li~~~~~~g 421 (638)
..+...+.- ...|..-...-.+..+...+ ..+.+....-.-. -+...|+..++.--..|
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~A-l~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAA-LKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHH-HHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 765332211 11222112222223333222 3333322211000 02234555666666677
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHcc---CCHHHHH
Q 006614 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSS-ARVYAVMIKHFGKC---GRLSDAV 497 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~---g~~~~A~ 497 (638)
-++....+|+.+.+..+ .++.........+-...-++++.+++++-...-..|+ ...|+..+.-+.+. ..++.|.
T Consensus 492 tfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 77777788887776653 2333333333344455566677776666554433333 23455544444432 3567777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHH
Q 006614 498 DLFNEMKKLRCKPDVYTYNALMSGM--VRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 498 ~~~~~m~~~~~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~ 540 (638)
.+|++..+ |++|...-+-.|+.+- -+.|-...|+++++++..
T Consensus 571 dLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 571 DLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 77777776 5555543333232221 234666666666666554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.8e-10 Score=107.01 Aligned_cols=285 Identities=14% Similarity=0.077 Sum_probs=204.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006614 299 LTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVI 378 (638)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 378 (638)
-+......-.+-+...+++.+...+++...+..+ +....+..-|.++...|+..+-..+=.++.+.- +....+|-.+-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 3555555566667778888888888888877632 344455555667777777776666666666643 22456666666
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 006614 379 KSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRY 458 (638)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 458 (638)
--|...++..++ +++|.+...-.- .=...|-.....|.-.|.-|+|+..+...-+.- +-..--+.-+.--|.+.++.
T Consensus 320 ~YYl~i~k~seA-Rry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 320 CYYLMIGKYSEA-RRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHhcCcHHH-HHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence 666666777666 777766554321 113467777888888888999998888776541 22222233345567888999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHHcCChHHHH
Q 006614 459 EAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL----R--CKPDVYTYNALMSGMVRAGMIDDAY 532 (638)
Q Consensus 459 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~--~~p~~~~~~~l~~~~~~~g~~~~A~ 532 (638)
+-|.+.|.++... .|.|+.+.+.+.-.....+.+.+|...|...... + ..-...+++.|.++|.+.+++++|+
T Consensus 397 kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999988876 5667888888888777888899999999876521 1 1124567889999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 533 SLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCL 592 (638)
Q Consensus 533 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 592 (638)
..+++.+... +-|..++.++.-.|...|+++.|.+.|++.. .+.||..+-..++..+
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 9999998863 4588899999999999999999999999988 5678887766666544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=7e-14 Score=133.57 Aligned_cols=230 Identities=16% Similarity=0.177 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+.......++++.|.+.++.+...+ +.++..+..++.. ...+++++|..++.+..+. .++...+..++..
T Consensus 44 ~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~ 119 (280)
T PF13429_consen 44 PEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQL 119 (280)
T ss_dssp ------------------------------------------------------------------------------H-
T ss_pred ccccccccccccccccccccccccccccccc-ccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHH
Confidence 3444444444444555555555555554432 1133344444444 3445555555554444332 2233444444444
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+.+.++++++.++++.+........+...|..+...+.+.|+.++|++.+++..+.. +.|....+.++..+...|+.++
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~ 198 (280)
T PF13429_consen 120 YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDE 198 (280)
T ss_dssp HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHH
Confidence 555555555555555544332222344444444555555555555555555555432 1134444455555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 361 (638)
+.+++....+.. +.|...+..+..++...|+.++|+.+|++..+..+. |..+...+..++.+.|+.++|.++..+
T Consensus 199 ~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 199 AREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT--------------
T ss_pred HHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence 444444444332 113333444445555555555555555555443222 444444555555555555555554444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-10 Score=105.88 Aligned_cols=293 Identities=13% Similarity=0.142 Sum_probs=148.2
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
.|+|.+|..+..+..+.+. .-...|..-..+.-+.|+.+.+-+++.+.-+..-.++...+-+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e--~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE--QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc--chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 5666666666666555443 23344555555555666666666666666554223444455555555666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 006614 288 LVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQC 367 (638)
Q Consensus 288 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 367 (638)
-+.++.+.++. +........++|.+.|++.+...+...+.+.|.--|...-. +
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~-l------------------------- 227 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR-L------------------------- 227 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-H-------------------------
Confidence 66665555443 44555555566666666666666666666555443322100 0
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006614 368 KPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCS 447 (638)
Q Consensus 368 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 447 (638)
...+|+.+++-....++...- ..+++..... .+-++..-..++.-+.+.|+.++|.++.++..+++..++ ...
T Consensus 228 --e~~a~~glL~q~~~~~~~~gL-~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~ 300 (400)
T COG3071 228 --EQQAWEGLLQQARDDNGSEGL-KTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR 300 (400)
T ss_pred --HHHHHHHHHHHHhccccchHH-HHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH
Confidence 001112222111111111110 1222222211 122344445555566666666666666666666654443 111
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 006614 448 LINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGM 527 (638)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 527 (638)
.-.+.+-++.+.-.+..+...+. .+.++..+..|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+
T Consensus 301 -~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 301 -LIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGE 376 (400)
T ss_pred -HHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCC
Confidence 11233445555555555544443 3334455556666666666666666666655543 3566666666666666666
Q ss_pred hHHHHHHHHHHHH
Q 006614 528 IDDAYSLLRRMEE 540 (638)
Q Consensus 528 ~~~A~~~~~~m~~ 540 (638)
..+|.++.++...
T Consensus 377 ~~~A~~~r~e~L~ 389 (400)
T COG3071 377 PEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHH
Confidence 6666666555543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.3e-09 Score=100.98 Aligned_cols=423 Identities=17% Similarity=0.208 Sum_probs=225.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 006614 135 LDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKI 214 (638)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 214 (638)
+...|+-++|......-++.+ .-+...|..+.-.+....++++|++.|......+.. |...|.-+.-.-++.|+++-.
T Consensus 51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhH
Confidence 344555566665555554432 333344444444444455666666666666555322 555555555555555666665
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHhcCCHHHHHH
Q 006614 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG-LQPTAKIYTTLV------SIYFKLGEVEKALG 287 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~ 287 (638)
.+.-..+.+..+ .....|..+..++.-.|+...|..++++..+.- -.|+...+.... ....+.|.+++|++
T Consensus 129 ~~tr~~LLql~~--~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 129 LETRNQLLQLRP--SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 555555555443 344555555556666666666666666655432 124444433222 23345566666666
Q ss_pred HHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccCCHHHHH-HHHHHHHH
Q 006614 288 LVQEMKGKGCALTVYT-YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLIN-NLINVLGRAGRLEDAL-KLFNKMEA 364 (638)
Q Consensus 288 ~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~-~~~~~~~~ 364 (638)
.+..-...- .|-.. -..-...+.+.+++++|..++..++... ||..-|. .+..++.+-.+.-++. .+|....+
T Consensus 207 ~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 207 HLLDNEKQI--VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 665443321 12222 2233455667777777777777777653 3444333 3333443333333333 45554433
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCC---
Q 006614 365 LQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEME----EKG--- 437 (638)
Q Consensus 365 ~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~--- 437 (638)
.- |....-..+--......+.......++..+.+.|+++- +..+...|-.....+-..++.-.+. ..|
T Consensus 283 ~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~ 357 (700)
T KOG1156|consen 283 KY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFN 357 (700)
T ss_pred cC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCC
Confidence 21 11111111111111223334444566666777776543 2223322222111111111111111 110
Q ss_pred -------CCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006614 438 -------FPPCPA--AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRC 508 (638)
Q Consensus 438 -------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 508 (638)
-+|... ++..++..+-+.|+++.|...++....+ .+.-+..|..-.+.+...|++++|...+++..+..
T Consensus 358 ~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH-TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD- 435 (700)
T KOG1156|consen 358 FLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH-TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD- 435 (700)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-
Confidence 144444 3445677888889999999999988875 22335566666788888999999999999988765
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--------HHHH--HHHHHhcCChHHHHHHHHHhh
Q 006614 509 KPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINS--------HNII--LNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 509 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--------~~~l--~~~~~~~g~~~~A~~~~~~m~ 574 (638)
.+|...-.--..-..++.+.++|.++.....+.|. +... |-.+ ..+|.+.|++..|++=|..+.
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 45555444556666788899999999888888764 2221 1111 345777788877777666654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-11 Score=121.08 Aligned_cols=284 Identities=17% Similarity=0.112 Sum_probs=126.7
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHccCChHHHHHHH
Q 006614 176 VNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCF-PDTVTYSALISAFGKLGRDISAIRLF 254 (638)
Q Consensus 176 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 254 (638)
..+|...|.++.+.- .-+......+..+|...+++++|.++|+.+.+..+.. .+...|.+.+-.+-+.- ++..+
T Consensus 335 ~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHHH
Confidence 345555555543331 1122333444555555555555555555555443321 23344444433322111 11111
Q ss_pred H-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006614 255 D-EMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK 333 (638)
Q Consensus 255 ~-~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 333 (638)
. .+.+. -+..+.+|.++..+|.-+++.+.|++.|+...+.+.. ...+|+.+.+-+....++|.|...|+..+.-.+.
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 1 11111 1123445555555555555555555555555444322 3444555444455555555555555444432111
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006614 334 PDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSIL 413 (638)
Q Consensus 334 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~l 413 (638)
+-..|.-+...|.+.++++.|.-.|+++.+.+ | .+.+....+
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P-----------------------------------~nsvi~~~~ 529 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--P-----------------------------------SNSVILCHI 529 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCC--c-----------------------------------cchhHHhhh
Confidence 11222233444444444444444444443322 1 122222333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCH
Q 006614 414 IDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRL 493 (638)
Q Consensus 414 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 493 (638)
...+.+.|+.|+|++++++....+ +.|+..-...+..+...+++++|+..++++++. .+.+..++..+...|-+.|+.
T Consensus 530 g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 530 GRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred hHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccc
Confidence 344455555566666666555544 334444444444455555555555555555553 333444555555555555555
Q ss_pred HHHHHHHHHHHhC
Q 006614 494 SDAVDLFNEMKKL 506 (638)
Q Consensus 494 ~~A~~~~~~m~~~ 506 (638)
+.|+.-|.-+.+.
T Consensus 608 ~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 608 DLALLHFSWALDL 620 (638)
T ss_pred hHHHHhhHHHhcC
Confidence 5555555555443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-11 Score=121.13 Aligned_cols=285 Identities=12% Similarity=0.035 Sum_probs=205.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCChHHHHHH
Q 006614 316 RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQC--KPNVVTYNTVIKSLFESKAPASEASA 393 (638)
Q Consensus 316 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~~~~~ 393 (638)
+..+|...|...... +.-...+...+..+|...+++++|.++|+.+.+... .-+...|.+.+--+- +..+- -.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~L-s~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVAL-SY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHH-HH
Confidence 345666666663333 222334445566667777777777777776655321 123444554442221 11111 11
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 006614 394 WFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG 473 (638)
Q Consensus 394 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 473 (638)
+-+.+.+. .+-.+.+|.++.++|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..... .
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-D 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-C
Confidence 11222222 24467899999999999999999999999999875 557889999999999999999999999998874 2
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006614 474 CSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNII 553 (638)
Q Consensus 474 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 553 (638)
+.+-..|--+...|.+.++++.|.-.|++..+.+ +-+.+....+...+-+.|+.++|+.+++++.....+ |+..---.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 2233445557788999999999999999998865 345666777788888999999999999999987544 44444445
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006614 554 LNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEAARLMKDMNAKG 612 (638)
Q Consensus 554 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 612 (638)
+..+...+++++|+..++++++. .|+ ...|..+...|.+.|+.+.|..-|--|.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 67778889999999999999964 554 5678888999999999999999888887543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.1e-11 Score=119.17 Aligned_cols=247 Identities=16% Similarity=0.102 Sum_probs=154.8
Q ss_pred hhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCH
Q 006614 116 GRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTA 195 (638)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 195 (638)
.+..|..|+..||..+|..|+..|+.+.|- +|.-|.-...+.+...++.++....++++.+.+. .|.+
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 346788899999999999999999999988 8888877778888889999999988888887776 5788
Q ss_pred HHHHHHHHHHHhcCCHhH---HHHHHHHHHh----CCCCCCCHHHH-------------HHHHHHHHccCChHHHHHHHH
Q 006614 196 NTYNSMILMLMQEGYYEK---IHELYNEMCN----EGNCFPDTVTY-------------SALISAFGKLGRDISAIRLFD 255 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~---A~~~~~~~~~----~~~~~~~~~~~-------------~~l~~~~~~~g~~~~A~~~~~ 255 (638)
.+|..+..+|...|+... +.+.++.... .|...|....+ ...+....-.|-++.+++++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998654 3332222211 11110111110 112222333344444444443
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006614 256 EMKENGLQPTAKIYTTLVSIYFK-LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP 334 (638)
Q Consensus 256 ~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 334 (638)
.+...... .+... +++-... ...+++-..+.....+ .|++.+|..+++.-.-+|+.+.|..++.+|.+.|.+.
T Consensus 164 ~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 164 KVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred hCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 33321100 00101 1222222 1223333333333332 4677777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 006614 335 DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFE 383 (638)
Q Consensus 335 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 383 (638)
+..-|-.|+-+ .++...+..+++-|...|+.|+..|+...+-.++.
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 77666666655 66667777777777777777777777666655555
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.7e-09 Score=101.15 Aligned_cols=462 Identities=14% Similarity=0.164 Sum_probs=311.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 006614 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
|-.++.+ -..+++..-.++.+.+++. .+....+.....-.+...|+-++|......-....+. +.+.|..+.-.+-.
T Consensus 11 F~~~lk~-yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKC-YETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHH-HHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 3334443 3567888888888888773 4445566665555667789999999988887775444 78889988888888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
..++++|+..|..+...++ .|...+.-+.-.-++.|+++.....-....+.. +.....|..++-++.-.|++..|..
T Consensus 88 dK~Y~eaiKcy~nAl~~~~--dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEK--DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999876 678888888777888899988888877777642 2356678889999999999999999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHH
Q 006614 288 LVQEMKGKG-CALTVYTYTELI------KGLGRAGRVEDAYGLFMNMLKEGCKPDIV-LINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 288 ~~~~m~~~~-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~ 359 (638)
++++..+.. -.|+...|.... ....+.|..++|++.+..-... + .|-. .-.+-...+.+.+++++|..++
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 999998764 245666554432 3456788888888877665443 1 1333 3345566788999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHH-hcCChHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC
Q 006614 360 NKMEALQCKPNVVTYNTVIKSLF-ESKAPASEASAWFEKMKANGVLPSPFTYSIL-IDGFCKTNRVEKAHLLLEEMEEKG 437 (638)
Q Consensus 360 ~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~ 437 (638)
..+.... ||...|+..+..+. +-.+..++...++....+.- |....-..+ ++......-.+..-+++..+.+.|
T Consensus 243 ~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 243 RRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 9999866 88888887776655 35555555456666665541 111111111 111111222334556677778888
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----cC----------CCCcHHH--HHHHHHHHHccCCHHHHHHHHH
Q 006614 438 FPPCPAAYCSLINGYGKAKRYEAANELFLELKE----YC----------GCSSARV--YAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 438 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~----------~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 501 (638)
+++ ++..+...|-.....+-..++...+.. .+ -+|.... +-.++..|-+.|+++.|...++
T Consensus 319 ~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 654 334444444332222212222222211 10 1344433 4567888999999999999999
Q ss_pred HHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC
Q 006614 502 EMKKLRCKPDV-YTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKP 580 (638)
Q Consensus 502 ~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 580 (638)
..... .|+. ..|..-...+...|++++|..++++..+.. .||...-.--..-..++...++|.++.....+.|.
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~-- 470 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF-- 470 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--
Confidence 99875 4553 345555677889999999999999999865 34554443455556788999999999999987664
Q ss_pred CHHH--------HHHH--HHHHHccCCHHHHHHHHHHHH
Q 006614 581 DAVS--------YNTI--LGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 581 ~~~~--------~~~l--~~~~~~~g~~~~A~~~~~~m~ 609 (638)
+... |-.+ ..+|.+.|++..|++=|....
T Consensus 471 ~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 471 GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 2221 2222 456778888887776555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-10 Score=101.85 Aligned_cols=225 Identities=15% Similarity=0.128 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC---HHHHHHH
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD---TVTYSAL 237 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l 237 (638)
+.|..-++.+. ..+.++|..+|-+|.+... -+.++.-+|.+.|-+.|..++|+.+.+.+.+.... +. ......|
T Consensus 37 r~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdl-T~~qr~lAl~qL 113 (389)
T COG2956 37 RDYVKGLNFLL-SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDL-TFEQRLLALQQL 113 (389)
T ss_pred HHHHhHHHHHh-hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCC-chHHHHHHHHHH
Confidence 34444444443 3578899999999987532 25666777888888999999999999988875221 11 1234556
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh
Q 006614 238 ISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT----VYTYTELIKGLGR 313 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~ 313 (638)
..-|...|-+|.|.++|..+.+.| ..-......|+..|-...+|++|+++-+++.+.+..+. ...|.-+...+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 777888899999999998888754 23456677888888889999999998888887765543 2355666666777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHH
Q 006614 314 AGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASE 390 (638)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 390 (638)
..+++.|..++.+..+.+.+ .+..--.+.+.+...|++..|.+.++.+.+.+..--..+...|..+|...|+..+.
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 193 SSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred hhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 78888888888888876544 44444556777888888888888888887755332233344444444444444444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.3e-10 Score=104.03 Aligned_cols=287 Identities=15% Similarity=0.099 Sum_probs=208.9
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHH
Q 006614 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAI 251 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 251 (638)
-.|++.+|+++..+-.+.+.. ....|..-+.+--+.|+.+.+-.++.++.+..+. ++...+-+........|+++.|.
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~-~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD-DTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHhCCCchhHH
Confidence 479999999999998887644 3445666667778899999999999999887433 66777788888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 006614 252 RLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV-------YTYTELIKGLGRAGRVEDAYGLF 324 (638)
Q Consensus 252 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~ 324 (638)
.-++++.+.+ +-+.........+|.+.|++.....++.++.+.|.--+. .+|..+++-....+..+.-...|
T Consensus 174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 9999999875 347888999999999999999999999999999876553 46677777776677777766677
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 006614 325 MNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVL 404 (638)
Q Consensus 325 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~ 404 (638)
++..++ .+.++..-.+++.-+.++|+.++|.++.++..+.+..|+... ++ ...+-++...-....-......+..
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~---~~-~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR---LI-PRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH---HH-hhcCCCCchHHHHHHHHHHHhCCCC
Confidence 776554 344666777888899999999999999999888776665221 11 2334444444422222333334333
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 405 PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 405 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
+..+.++...|.+.+.|.+|...|+...+. .|+..+|..+..++.+.|+..+|.++.++...
T Consensus 328 --p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 --PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred --hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 355666666777777777777777755554 56666666666666666666666666666553
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.3e-09 Score=102.09 Aligned_cols=418 Identities=14% Similarity=0.141 Sum_probs=222.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH--HHHH
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA--LISA 240 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--l~~~ 240 (638)
+.+=++.+...|++++|.....++...+ +.+...+.+-+.++++.++|++|+.+.+.-.. ..+++. +=.+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~-------~~~~~~~~fEKA 86 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA-------LLVINSFFFEKA 86 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch-------hhhcchhhHHHH
Confidence 3344567778888888888888888776 44667777777888888888888855544221 112222 3455
Q ss_pred HH--ccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC
Q 006614 241 FG--KLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGL-GRAGR 316 (638)
Q Consensus 241 ~~--~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~ 316 (638)
|| +.++.|+|+..++ |..+ |..+...-...+.+.|++++|+++|+.+.+.+.. .+...+.+- ...+
T Consensus 87 Yc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~- 156 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVA- 156 (652)
T ss_pred HHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHH-
Confidence 55 6788888888887 3333 3446666677888899999999999998776432 222222111 0111
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 006614 317 VEDAYGLFMNMLKEGCKPDIVLIN---NLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASA 393 (638)
Q Consensus 317 ~~~A~~~~~~~~~~~~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~ 393 (638)
.+... +.+......| ..+|. .....+...|++.+|+++++.....+.+ .+. .++..+ +.
T Consensus 157 --a~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-----------~l~-~~d~~e--Ee 218 (652)
T KOG2376|consen 157 --AALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICRE-----------KLE-DEDTNE--EE 218 (652)
T ss_pred --HhhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------hhc-ccccch--hh
Confidence 01111 1122222222 22333 3344567789999999999887432110 000 000000 00
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHH-----------------
Q 006614 394 WFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAA----YCSLINGY----------------- 452 (638)
Q Consensus 394 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~----------------- 452 (638)
+-.++ ++ .-..+.-.+-..|+.++|..++...++.. ++|... .|.++..-
T Consensus 219 ie~el-------~~-IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~ 289 (652)
T KOG2376|consen 219 IEEEL-------NP-IRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQ 289 (652)
T ss_pred HHHHH-------HH-HHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHH
Confidence 00000 00 01122233444555555555555555443 222211 11111100
Q ss_pred ----------------------------HccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH--ccCCHHHHHHHHHH
Q 006614 453 ----------------------------GKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFG--KCGRLSDAVDLFNE 502 (638)
Q Consensus 453 ----------------------------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~ 502 (638)
.-.+..+.+.++-.... +..|. ..+..++.... +...+..|..++..
T Consensus 290 ~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~ 366 (652)
T KOG2376|consen 290 VFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQ 366 (652)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 00111122222111111 11122 22333333222 12245667777766
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 006614 503 MKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLR--------RMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 503 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 574 (638)
.-+..-.......-..+......|+++.|.+++. ...+.+..|-.+ ..+...+.+.++.+.|..++.+.+
T Consensus 367 ~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai 444 (652)
T KOG2376|consen 367 FADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAI 444 (652)
T ss_pred HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHH
Confidence 6554311223445556666778999999999988 555555455444 446667777777777777777765
Q ss_pred hC--CCCCCHHHHHH----HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccC
Q 006614 575 HS--EIKPDAVSYNT----ILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVD 631 (638)
Q Consensus 575 ~~--~~~p~~~~~~~----l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 631 (638)
.. .-.+....... +...-.+.|+-++|..+++++.+. .++|..+...++.+|++.+
T Consensus 445 ~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 445 KWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcC
Confidence 41 11122222333 333335679999999999999875 3677778888888887754
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-09 Score=99.41 Aligned_cols=431 Identities=16% Similarity=0.139 Sum_probs=271.7
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006614 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
.-+....++..|+.+++--...+-+-...+-..+...+...|++++|+..|..+..... ++...+-.|.-.+.-.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHH
Confidence 34455678888888887765443322222333455667789999999999999988655 6666666666666677889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006614 248 ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 327 (638)
.+|.++-++..+ ++-.-..+.+..-+.++-++-..+.+.+.+. ...--+|.......-.+++|+++|...
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999888766443 4445556677777888888877777766542 233344555555666889999999999
Q ss_pred HHcCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC
Q 006614 328 LKEGCKPDIVLINN-LINVLGRAGRLEDALKLFNKMEALQCKPNV-VTYNTVIKSLFESKAPASEASAWFEKMKANGVLP 405 (638)
Q Consensus 328 ~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~ 405 (638)
+..+ |+-...|. +.-+|.+..-++-+.++++-....- ||+ ...|......++.-+...+ +.-...+.+++...
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdStiA~NLkacn~fRl~ngr~a-e~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDSTIAKNLKACNLFRLINGRTA-EDEKKELADNIDQE 252 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCcHHHHHHHHHHHhhhhccchh-HHHHHHHHhccccc
Confidence 8863 34444443 4457788888999999988876633 443 4444444333333222222 22223344333211
Q ss_pred CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHH
Q 006614 406 SPFTYSILIDGFCKT-----NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVY 480 (638)
Q Consensus 406 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 480 (638)
| ..+.-.++. .+-+.|++++--+.+. - +.+-..|+-.|.+.+++.+|..+..++.. ..+.-|
T Consensus 253 ----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~Ey 319 (557)
T KOG3785|consen 253 ----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEY 319 (557)
T ss_pred ----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCC----CChHHH
Confidence 1 122223332 3557888888777654 2 34555677788999999999998877643 122222
Q ss_pred HHHHHHHHcc-------CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006614 481 AVMIKHFGKC-------GRLSDAVDLFNEMKKLRCKPDVY-TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNI 552 (638)
Q Consensus 481 ~~li~~~~~~-------g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 552 (638)
-.-.-.+... ..++-|...|.-.-+.+..-|.. --.++..++.-..++++.+..++.....-...|...+ .
T Consensus 320 ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N 398 (557)
T KOG3785|consen 320 ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-N 398 (557)
T ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-H
Confidence 2222222233 34556777777655544333322 2344555666667889999999888875433344444 4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHH-HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHhcc
Q 006614 553 ILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYN-TILGCLSRAGMFEEAARLMKDMNAKGFEYDQI-TYSSILEAVGKV 630 (638)
Q Consensus 553 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~ 630 (638)
+..+.+..|++.+|.++|-++....++ |..+|. .+.++|.+.|+.+-|-.++-++. -..+.. ....+..-|.+.
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHH
Confidence 788999999999999999988765555 555555 66789999999999977766553 333333 334455667776
Q ss_pred CCc
Q 006614 631 DED 633 (638)
Q Consensus 631 g~~ 633 (638)
+++
T Consensus 475 ~eF 477 (557)
T KOG3785|consen 475 NEF 477 (557)
T ss_pred HHH
Confidence 654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-08 Score=97.06 Aligned_cols=451 Identities=12% Similarity=0.150 Sum_probs=241.6
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH
Q 006614 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSR-KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL 237 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 237 (638)
-+++|...+..+.++|++..-...|+..+.. .+......|...+...-..|-++-++.+|++.++.. +..-+-.
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~-----P~~~eey 175 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA-----PEAREEY 175 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC-----HHHHHHH
Confidence 4578888899999999999999999988654 344456678888888888999999999999999844 4447778
Q ss_pred HHHHHccCChHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCCC--HHHHHH
Q 006614 238 ISAFGKLGRDISAIRLFDEMKEN------GLQPTAKIYTTLVSIYFKLGEVEK---ALGLVQEMKGKGCALT--VYTYTE 306 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~~--~~~~~~ 306 (638)
+..+++.+++++|.+.+...... .-+.+...|.-+-+...++-+.-. ...+++.+... -+| ...|++
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~S 253 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCS 253 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHH
Confidence 89999999999999999887643 124466677777777766554332 22334444332 233 357899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC----------------------HHHHHHHHHHHHH
Q 006614 307 LIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR----------------------LEDALKLFNKMEA 364 (638)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------------------~~~A~~~~~~~~~ 364 (638)
|.+.|.+.|+++.|..+|++.+..-. .+.-|..+.+.|++-.. ++-.+.-|+.+..
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 99999999999999999999887522 33344445555543211 1222222333222
Q ss_pred CCC-----------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHH
Q 006614 365 LQC-----------KPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPS------PFTYSILIDGFCKTNRVEKAH 427 (638)
Q Consensus 365 ~~~-----------~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~------~~~~~~li~~~~~~g~~~~A~ 427 (638)
.+. ..++.+|..-+. +..++..+. ...+.+.... +.|. ...|..+.+.|-..|+++.|.
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~-i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQ-INTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHH-HHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 110 011112211111 111222222 2222222221 1111 123445555555666666666
Q ss_pred HHHHHHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-----------------cHHHHHHHHHHH
Q 006614 428 LLLEEMEEKGFPPC---PAAYCSLINGYGKAKRYEAANELFLELKEYCGCS-----------------SARVYAVMIKHF 487 (638)
Q Consensus 428 ~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~li~~~ 487 (638)
.+|++..+...+-- ..+|..-...-.+..+++.|.++.+......-.+ +..+|...++.-
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle 487 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE 487 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH
Confidence 66666655432211 2344444444445556666666555554321110 122344444444
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh-c--CCh
Q 006614 488 GKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAK-S--GGP 563 (638)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~-~--g~~ 563 (638)
...|-++....+++++.+..+.......| ....+-.+.-++++.+.|++-+..-..|+ ...|+..+.-+.+ - .++
T Consensus 488 Es~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence 45555556666666665554322211111 11122334445556665555444322233 2344444433322 1 245
Q ss_pred HHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HhHHHHHH
Q 006614 564 KRAMEIFTKMQHSEIKPDAVS--YNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQ--ITYSSILE 625 (638)
Q Consensus 564 ~~A~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~ 625 (638)
+.|..+|++..+ |.+|...- |-.....=-+-|....|..++++.... +++.. ..|+..|+
T Consensus 567 EraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 567 ERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 666666666665 44433211 111112222345566666666665432 33332 24555544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.4e-10 Score=105.43 Aligned_cols=199 Identities=12% Similarity=0.038 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...+..+...+...|++++|.+.+++.++.. +.+...+..+...+...|++++|...|++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 3455556666666666666666666655532 33445555555666666666666666666555432 244455555555
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+...|++++|.+.|++.............+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 666666666666666655432111223344444555555555555555555555432 1233444455555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006614 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 327 (638)
|.+.+++..+.. +.+...+..+...+...|+.++|..+.+.+
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555555554431 223344444444444555555555544443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-10 Score=119.32 Aligned_cols=266 Identities=14% Similarity=0.055 Sum_probs=186.0
Q ss_pred CHHHHHHHHHHHH-----hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------cCCCHHHHHHHHHHhhhC
Q 006614 124 NSTTYMALIRCLD-----ETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILG---------KAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 124 ~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~ 189 (638)
+...|...+++.. ..+.+++|...+++.++.. +.+...+..+..++. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4455555554431 2346889999999998853 334556666655443 234588999999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHH
Q 006614 190 KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT-AKI 268 (638)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~ 268 (638)
.+. +...+..+...+...|++++|...|+++.+.++ .+...+..+...+...|++++|...+++..+.. |+ ...
T Consensus 334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~ 408 (553)
T PRK12370 334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSP--ISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAA 408 (553)
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhh
Confidence 544 788888898999999999999999999999875 567788888999999999999999999998864 43 333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006614 269 YTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGR 348 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 348 (638)
+..++..+...|++++|...+++......+-+...+..+...+...|+.++|...+.++..... .+....+.+...|+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhc
Confidence 4445556777899999999999987664332555677788888899999999999988766522 244455666667777
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 006614 349 AGRLEDALKLFNKMEAL-QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG 402 (638)
Q Consensus 349 ~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~ 402 (638)
.| +.|...++.+.+. ...+....+..++.++ .|+...+ ..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~--~g~~~~~-~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVA--HGEAIAE-KMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH--HhhhHHH-HHH-HHhhccc
Confidence 77 4777777766442 2233334444444333 3333332 333 6666653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-10 Score=105.65 Aligned_cols=202 Identities=12% Similarity=0.058 Sum_probs=159.7
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH
Q 006614 158 MGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL 237 (638)
Q Consensus 158 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 237 (638)
.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.|++..+..+ .+...+..+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~ 105 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP--NNGDVLNNY 105 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHH
Confidence 345677888888899999999999999887764 23577888888889999999999999999888765 566778888
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006614 238 ISAFGKLGRDISAIRLFDEMKENGL-QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 316 (638)
...+...|++++|.+.+++..+... ......+..+...+...|++++|.+.+++..+.... +...+..+...+...|+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCC
Confidence 8888899999999999998886432 224456777788888899999999999888876543 56677788888888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 317 VEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 317 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
+++|...+++..+. .+.+...+..++..+...|+.+.|..+.+.+..
T Consensus 185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999988888876 334566667777888888888888888777654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.9e-11 Score=106.19 Aligned_cols=230 Identities=13% Similarity=0.091 Sum_probs=191.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHHh
Q 006614 129 MALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANT-YNSMILMLMQ 207 (638)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 207 (638)
+-+.++|.+.|.+.+|.+.++..+. -.|-+.+|..+.++|.+-.+++.|+.+|.+-.+. .|-.+| ..-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~--q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT--QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh--cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 5678999999999999999998887 4677889999999999999999999999998876 444444 4556788888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
.++.++|.++|+...+..+ .++.....+...|.-.++.+-|+.+++++.+.|+. +...|+.+.-+|.-.+++|-++.
T Consensus 303 m~~~~~a~~lYk~vlk~~~--~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP--INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC--ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 8999999999999998776 67888888888888899999999999999999864 88888888888888999999998
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 006614 288 LVQEMKGKGCAL--TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEAL 365 (638)
Q Consensus 288 ~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 365 (638)
-|+.....--.| -...|..+.......||+..|.+.|+-.+..+.. ....+|.|.-.-.+.|++++|..+++...+.
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 888877643323 2456667777788899999999999988877654 6778888888888999999999999988764
Q ss_pred C
Q 006614 366 Q 366 (638)
Q Consensus 366 ~ 366 (638)
.
T Consensus 459 ~ 459 (478)
T KOG1129|consen 459 M 459 (478)
T ss_pred C
Confidence 3
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-07 Score=88.13 Aligned_cols=274 Identities=14% Similarity=0.062 Sum_probs=177.5
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH-HhcCChHHHHHHHHHHHHhCCCCCCHHHH
Q 006614 332 CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSL-FESKAPASEASAWFEKMKANGVLPSPFTY 410 (638)
Q Consensus 332 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~-~~~~~~~~~~~~~~~~m~~~~~~~~~~~~ 410 (638)
++-|+.....+...+...|+.++|...|+.....+ |+..+-.-+-..+ .+.|+.... ..+...+.... ..+...|
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~-~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQD-SALMDYLFAKV-KYTASHW 303 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhH-HHHHHHHHhhh-hcchhhh
Confidence 33455566666666666666666666666655422 3332221111111 122222222 22222222110 1122333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 006614 411 SILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKC 490 (638)
Q Consensus 411 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 490 (638)
-.-.......++++.|+.+-++.++.+ +.+...|..-...+...|+.++|.-.|+..... -+.+...|.-|+++|...
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhh
Confidence 333444556778888888888888775 566677777778888889999999999888875 446788899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHH-cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 006614 491 GRLSDAVDLFNEMKKLRCKPDVYTYNALM-SGMVR-AGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAM 567 (638)
Q Consensus 491 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~~-~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 567 (638)
|++.+|..+-+...+. ++.+..+.+.+. ..|.. ...-++|.+++++.+.. .|+ ....+.+...+...|..++++
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHH
Confidence 9999988877765543 234455555442 22322 22347788888887764 455 445667778888899999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 568 EIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQI 618 (638)
Q Consensus 568 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 618 (638)
.++++... ..||....+.+.+.+...+.+++|.+.|....+. .|+..
T Consensus 459 ~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~~ 505 (564)
T KOG1174|consen 459 KLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKSK 505 (564)
T ss_pred HHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccch
Confidence 99998774 3688888899999999999999999988888743 45443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-09 Score=113.95 Aligned_cols=268 Identities=11% Similarity=0.014 Sum_probs=189.2
Q ss_pred CCCHHHHHHHHHHHHc-----CCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh---------cCCHhHHHHHHHHHH
Q 006614 157 VMGPSVLSEIVNILGK-----AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ---------EGYYEKIHELYNEMC 222 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 222 (638)
..+...|...+++... .+..++|...|++..+..+. +...|..+..++.. .+++++|...++++.
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3455555555555321 23568999999999987433 56667766665542 345899999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 223 NEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY 302 (638)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 302 (638)
+.++ .+...+..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.++. +..
T Consensus 332 ~ldP--~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 332 ELDH--NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred hcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 9876 678888899999999999999999999999874 345778889999999999999999999999988655 333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhH-HHHHHHH
Q 006614 303 TYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTY-NTVIKSL 381 (638)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~ll~~~ 381 (638)
.+..++..+...|++++|...+++..+...+-+...+..+..++...|+.++|...++++... .|+.... +.+...+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 334445556778999999999999887643335556778888999999999999999987653 2444443 4444445
Q ss_pred HhcCChHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006614 382 FESKAPASEASAWFEKMKAN-GVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKG 437 (638)
Q Consensus 382 ~~~~~~~~~~~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 437 (638)
+..++ .+ ...++.+.+. ...+....+ .-..+.-.|+-+.+..+ +++.+.+
T Consensus 486 ~~~g~--~a-~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNSE--RA-LPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccHH--HH-HHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 55554 22 4434444332 112222222 33445566777777666 7777654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.8e-09 Score=105.26 Aligned_cols=130 Identities=19% Similarity=0.222 Sum_probs=83.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006614 444 AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV 523 (638)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 523 (638)
++..+.+.|...|++++|++.+++.++. .+..+..|..-...+-+.|++++|.+.++...+.. .-|...-+-....+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h-tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH-TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHH
Confidence 4455566677777777777777777775 23346667777777777777777777777777654 235555555666677
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHH------H--HHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 524 RAGMIDDAYSLLRRMEEDGCVPDINS------H--NIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 524 ~~g~~~~A~~~~~~m~~~~~~p~~~~------~--~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
+.|++++|.+++......+..|-... | .-...+|.+.|++..|++.|..+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777766553322111 1 2235566777777777766666543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-07 Score=92.20 Aligned_cols=448 Identities=13% Similarity=0.070 Sum_probs=230.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH--HHHH--
Q 006614 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM--ILML-- 205 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~-- 205 (638)
+=++.+..+|++++|.+....++..+ +-+...+..-+.++.+.+++++|+.+.+.-.. ..+++.. =.+|
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHH
Confidence 34455666777777777777776653 45555666666667777777777744333211 1111221 2333
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 006614 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~ 284 (638)
.+.++.++|+..++-..+ .|..+...-...+.+.|++++|+.+++.+.+.+.+. +...-..++..-.
T Consensus 90 Yrlnk~Dealk~~~~~~~-----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a------- 157 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDR-----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA------- 157 (652)
T ss_pred HHcccHHHHHHHHhcccc-----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------
Confidence 356777777777662211 333455555566667777777777777776654321 1111111111100
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHc-------CCCCCH------H-HHHHHHHHHH
Q 006614 285 ALGLVQEMKGKGCALTVYTYTEL---IKGLGRAGRVEDAYGLFMNMLKE-------GCKPDI------V-LINNLINVLG 347 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~------~-~~~~li~~~~ 347 (638)
+... +.+......| ..+|..+ .-.+...|++.+|+++++...+. +-.-+. . .--.+..++-
T Consensus 158 ~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 158 ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 0000 1111111122 2233222 23455667777777777666221 100001 1 1123445566
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCChhh----HHHHHHHHHhcCChHHHHHHHHHHHHhCCC----------CCCHHHH-HH
Q 006614 348 RAGRLEDALKLFNKMEALQCKPNVVT----YNTVIKSLFESKAPASEASAWFEKMKANGV----------LPSPFTY-SI 412 (638)
Q Consensus 348 ~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~----------~~~~~~~-~~ 412 (638)
..|+.++|..++....+..+. |... -|.++..--...-.+......++....... .-..+.. +.
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred HhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888877777765532 3221 222221111111111111111111110000 0000011 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 006614 413 LIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYG--KAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKC 490 (638)
Q Consensus 413 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 490 (638)
++. ...+..+.+.++....... .|. ..+..++..+. +.....++.+++....+........+.-.++......
T Consensus 315 lL~--l~tnk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 315 LLA--LFTNKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHH--HHhhhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc
Confidence 121 2233334444443332211 232 23333333332 2235677777777777654444466677778888899
Q ss_pred CCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHH----HH
Q 006614 491 GRLSDAVDLFN--------EMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED--GCVPDINSHNIIL----NG 556 (638)
Q Consensus 491 g~~~~A~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~----~~ 556 (638)
|+++.|++++. .+.+.+..|- +...+...+.+.++.+.|..++++.+.. .-.+.....++++ ..
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 99999999998 5555444444 4455666777888888888888877642 0112223333333 33
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 557 LAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDM 608 (638)
Q Consensus 557 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 608 (638)
-.+.|+.++|..+++++.+.+ .+|..+...++.+|++. +.+.|..+-+.+
T Consensus 468 ~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 356799999999999998743 46788888888888876 677887766554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-07 Score=94.23 Aligned_cols=295 Identities=15% Similarity=0.119 Sum_probs=187.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc-
Q 006614 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQE- 208 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 208 (638)
-...++...|++++|.+.++.-.+. +......+......+.+.|+.++|..+|..+.++++. |..-|..+..++.-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhc
Confidence 3455677888888888888775442 3444566777788888888888888888888888543 555555555555222
Q ss_pred ----CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 209 ----GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD-ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 209 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
...+...++|+++.... |.......+.-.+..-..+ ..+..++..+..+|++ .+|+.|-..|......+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 25677788888887655 4333333332222222222 2455566677777754 35556666666555555
Q ss_pred HHHHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006614 284 KALGLVQEMKGK----G----------CALTV--YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLG 347 (638)
Q Consensus 284 ~A~~~~~~m~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 347 (638)
-..+++...... + -.|+. +++..+...|...|++++|+.+.++.++..+. .+..|..-...+-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHH
Confidence 555555554422 1 12333 34455677788888888888888888887433 4677888888888
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCH--H------HHHHHHHHHHh
Q 006614 348 RAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSP--F------TYSILIDGFCK 419 (638)
Q Consensus 348 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~--~------~~~~li~~~~~ 419 (638)
+.|++.+|.+.++.....+.. |...-+-....+.+.|+..++ ...+......+..|-. . -......+|.+
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A-~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEA-EKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHH-HHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888776533 455555556666677776666 6666666655532221 1 11334567888
Q ss_pred cCCHHHHHHHHHHHHh
Q 006614 420 TNRVEKAHLLLEEMEE 435 (638)
Q Consensus 420 ~g~~~~A~~~~~~~~~ 435 (638)
.|++..|++.|....+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 8888888877776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.6e-12 Score=84.34 Aligned_cols=50 Identities=40% Similarity=0.747 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhc
Q 006614 580 PDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGK 629 (638)
Q Consensus 580 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 629 (638)
||..+|++++++|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777764
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.6e-08 Score=97.58 Aligned_cols=425 Identities=13% Similarity=0.021 Sum_probs=231.3
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006614 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
.-++.+|..+.-++..+|+++.+.+.|++....- ......|+.+...|...|.-..|+.+.++-....+.++|...+..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 4467777777777888888888888888876542 336677777877888888888888888777665533233344433
Q ss_pred HHHHHH-ccCChHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHhCCCCCC
Q 006614 237 LISAFG-KLGRDISAIRLFDEMKEN--GL--QPTAKIYTTLVSIYFK-----------LGEVEKALGLVQEMKGKGCALT 300 (638)
Q Consensus 237 l~~~~~-~~g~~~~A~~~~~~m~~~--g~--~~~~~~~~~li~~~~~-----------~g~~~~A~~~~~~m~~~~~~~~ 300 (638)
.-+.|. +.+.+++++.+-.+..+. |. ......|..+.-+|.. .....++++.+++..+.+.. |
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-D 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence 333333 346666666666665541 11 1123334444333332 11245677777777776544 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 006614 301 VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKS 380 (638)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 380 (638)
....-.+.--|+..++++.|.+...+..+-+..-+...|..+.-.+...+++.+|+.+.+.....-. -|......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~-~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG-DNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-hhhhhchhhhhh
Confidence 2222223344667778888888888888775566777888888888888888888888776643210 011111111111
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH------hcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHH
Q 006614 381 LFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFC------KTNRVEKAHLLLEEMEE--KGFPPCPAAYCSLINGY 452 (638)
Q Consensus 381 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~------~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~ 452 (638)
-..-++..++ .. |...++..+- +.++-....++...+.- ........++..+....
T Consensus 557 ~~~~~~~e~~-l~---------------t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 557 ELTFNDREEA-LD---------------TCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred hhhcccHHHH-HH---------------HHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 1112222222 11 1111111111 11111111111111110 01111122222222222
Q ss_pred HccC---CHHHHHHHHHHHHHcCCC--Cc------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006614 453 GKAK---RYEAANELFLELKEYCGC--SS------ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSG 521 (638)
Q Consensus 453 ~~~g---~~~~A~~~~~~~~~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 521 (638)
...+ ..+.. +.+.... |+ ...|......+.+.+..++|...+.+..+.. +-....|......
T Consensus 621 a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~ 693 (799)
T KOG4162|consen 621 ASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLL 693 (799)
T ss_pred Hhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHH
Confidence 1111 11111 1111111 11 2345566667777777777777776666542 3345556666666
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHH--HHHHhhhCCCCCCHHHHHHHHHHHHccCCH
Q 006614 522 MVRAGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAME--IFTKMQHSEIKPDAVSYNTILGCLSRAGMF 598 (638)
Q Consensus 522 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 598 (638)
+...|..++|.+.|...... .|+ +.+..++...+.+.|+..-|.. ++..+.+.+. -+...|..+...+.+.|+.
T Consensus 694 ~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred HHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccch
Confidence 77777777777777777764 343 5566677777777777666666 7777776542 2667777777777777887
Q ss_pred HHHHHHHHHHHh
Q 006614 599 EEAARLMKDMNA 610 (638)
Q Consensus 599 ~~A~~~~~~m~~ 610 (638)
++|.+.|.....
T Consensus 771 ~~Aaecf~aa~q 782 (799)
T KOG4162|consen 771 KQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHHHh
Confidence 777777776654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.4e-08 Score=97.72 Aligned_cols=435 Identities=15% Similarity=0.071 Sum_probs=287.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC-HH
Q 006614 118 RRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT-AN 196 (638)
Q Consensus 118 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~ 196 (638)
...+..++..|..+.=++...|++..+.+.|++.... +.-....|+.+.-.+..+|.-..|..+.+.-......|+ ..
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 3445568899999999999999999999999987653 455667899999999999999999999988766543343 33
Q ss_pred HHHHHHHHHHh-cCCHhHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHcc-----------CChHHHHHHHHHHHHCC
Q 006614 197 TYNSMILMLMQ-EGYYEKIHELYNEMCNEGNC---FPDTVTYSALISAFGKL-----------GRDISAIRLFDEMKENG 261 (638)
Q Consensus 197 ~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~g 261 (638)
.+......|.+ -+.+++++++..++...... ......|..+.-+|... ....++++.+++..+.+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 34433444443 47788888888777662111 12344555555555422 22467888999988765
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006614 262 LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINN 341 (638)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 341 (638)
. -|......+.--|+..++++.|.+..++..+.+..-+...|..+.-.+...+++.+|+.+.+.....-.. |-.....
T Consensus 475 ~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~ 552 (799)
T KOG4162|consen 475 P-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDG 552 (799)
T ss_pred C-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchh
Confidence 2 2444444455567788999999999999999876779999999999999999999999999988875211 2222222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 006614 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKAN--GVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 342 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~--~~~~~~~~~~~li~~~~~ 419 (638)
-+..-...++.++++.....+...= -+.... ...++ ..........+.-. ...-...++..+......
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~w--e~~~~~-------q~~~~-~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALW--EAEYGV-------QQTLD-EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHH--HhhhhH-------hhhhh-hhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 2333344677777776666554310 000000 00000 00001111111110 011112333332222221
Q ss_pred c---CCHHHHHHHHHHHHhCCCCC--C------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006614 420 T---NRVEKAHLLLEEMEEKGFPP--C------PAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFG 488 (638)
Q Consensus 420 ~---g~~~~A~~~~~~~~~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 488 (638)
. -..+.. +....+.| + ...|......+.+.+..++|...+.+..+. .+.....|......+.
T Consensus 623 ~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 623 QLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLE 695 (799)
T ss_pred hhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHH
Confidence 1 111111 22111111 1 234566777788888888888888888775 4566777888888888
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 006614 489 KCGRLSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYS--LLRRMEEDGCVPDINSHNIILNGLAKSGGPKR 565 (638)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 565 (638)
..|..++|.+.|......+ |+ +....++...+.+.|+..-|.. ++..+.+.+. .+...|-.+...+.+.|+.++
T Consensus 696 ~~~~~~EA~~af~~Al~ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALALD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHhhHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHH
Confidence 8999999999998887753 54 5678888889999998877777 9999998763 478999999999999999999
Q ss_pred HHHHHHHhhh
Q 006614 566 AMEIFTKMQH 575 (638)
Q Consensus 566 A~~~~~~m~~ 575 (638)
|.+.|+...+
T Consensus 773 Aaecf~aa~q 782 (799)
T KOG4162|consen 773 AAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHh
Confidence 9999998775
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=82.30 Aligned_cols=49 Identities=45% Similarity=0.813 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006614 510 PDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA 558 (638)
Q Consensus 510 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 558 (638)
||..+||+++++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444444444444444444444444444444444444444444444443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.4e-08 Score=98.93 Aligned_cols=476 Identities=13% Similarity=0.067 Sum_probs=261.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-------CCCCC--------------CHHHHHHHHHHHHcCCCHHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVR-------STCVM--------------GPSVLSEIVNILGKAKMVNKAL 180 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~ 180 (638)
.|.+.+|+.+..+|...|+......+=+++.. .|+.. ....-..++....-.|-++.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999998752222222221 12110 0011122233334445556666
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 181 SIFYQIKSRKCKPTANTYNSMILMLMQEG-YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
++...+...... .+... +++-..... .+++-......... .|+..+|..+++.....|+.+.|..++.+|.+
T Consensus 160 kll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e----~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE----APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc----CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 666555433211 11111 122222222 23343333333333 28999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006614 260 NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
.|++.+..-|-.|+-+ .++..-+..++.-|.+.|+.|+..|+...+-.+.++|....+. .|.+ ....+
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~sq-~~hg~ 300 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EGSQ-LAHGF 300 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------cccc-hhhhh
Confidence 9998888877777666 7888888999999999999999999988777777755522221 1111 22222
Q ss_pred HHHHHHHHccCCHHHHHHHH------------HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCC--CC-
Q 006614 340 NNLINVLGRAGRLEDALKLF------------NKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG--VL- 404 (638)
Q Consensus 340 ~~li~~~~~~g~~~~A~~~~------------~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~--~~- 404 (638)
++-+..-.-.| ..|.+.+ .+..-.|.......|...+.... .|...+. .++-..+...- ..
T Consensus 301 tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~h-Qgk~e~v-eqlvg~l~npt~r~s~ 376 (1088)
T KOG4318|consen 301 TAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRH-QGKGEEV-EQLVGQLLNPTLRDSG 376 (1088)
T ss_pred hHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHH-cCCCchH-HHHHhhhcCCccccCc
Confidence 22222111122 1111111 11111122222233333332222 2222111 22222222110 00
Q ss_pred CCHHHHHHHHHHHHh----------------------cCCHHHHHHHHHHHH------------h----CCC-------C
Q 006614 405 PSPFTYSILIDGFCK----------------------TNRVEKAHLLLEEME------------E----KGF-------P 439 (638)
Q Consensus 405 ~~~~~~~~li~~~~~----------------------~g~~~~A~~~~~~~~------------~----~~~-------~ 439 (638)
.++..|..++.-|.+ .....+..++..... . +.. .
T Consensus 377 ~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h 456 (1088)
T KOG4318|consen 377 QNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAH 456 (1088)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhh
Confidence 111222222221111 111112222211110 0 000 1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHH
Q 006614 440 PCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL--RCKPDVYTYNA 517 (638)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ 517 (638)
+-...-+.++..|++.-+..++...-+.....-+ ...|..||+-++.....+.|..+.++.... .+..|..-+..
T Consensus 457 ~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~ 533 (1088)
T KOG4318|consen 457 LIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTS 533 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHH
Confidence 1122344455556665555555544444333211 257889999999999999999999887643 23345566788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc
Q 006614 518 LMSGMVRAGMIDDAYSLLRRMEEDGC-VPD-INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRA 595 (638)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 595 (638)
+.+.+.+.+....+..++.++.+.-. .|+ ..++--++++....|+.+.-.++++-+...|+..+ .-++....+.
T Consensus 534 l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrk 609 (1088)
T KOG4318|consen 534 LQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRK 609 (1088)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeec
Confidence 88889999999999999999887421 222 44555677777888999988888888887776542 3344455677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHh
Q 006614 596 GMFEEAARLMKDMNAKGFEYDQITYSSILEAVG 628 (638)
Q Consensus 596 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 628 (638)
++...|.++.+.-... ++|.+.....+.+.+.
T Consensus 610 dd~s~a~ea~e~~~qk-yk~~P~~~e~lcrlv~ 641 (1088)
T KOG4318|consen 610 DDQSAAQEAPEPEEQK-YKPYPKDLEGLCRLVY 641 (1088)
T ss_pred cchhhhhhcchHHHHH-hcCChHHHHHHHHHHH
Confidence 8888888877766554 5666665555555544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.4e-09 Score=104.14 Aligned_cols=244 Identities=23% Similarity=0.294 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC
Q 006614 266 AKIYTTLVSIYFKLGEVEKALGLVQEMKGK-----GC-ALTVYT-YTELIKGLGRAGRVEDAYGLFMNMLKE-----GCK 333 (638)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~ 333 (638)
..+...+...|...|++++|..+++...+. |. .|...+ .+.+...|...+++++|..+|+++... |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445566888888888888888888777653 21 223332 334677888999999999999998762 221
Q ss_pred -C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCH-HHH
Q 006614 334 -P-DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSP-FTY 410 (638)
Q Consensus 334 -p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~-~~~ 410 (638)
| -..+++.|...|.+.|++++|...++...+. ++.... -..|.. ..+
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I-----------------------------~~~~~~-~~~~~v~~~l 328 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI-----------------------------YEKLLG-ASHPEVAAQL 328 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-----------------------------HHHhhc-cChHHHHHHH
Confidence 2 2457788888999999999999999887541 111000 001111 234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC-----CC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC----C---CCc
Q 006614 411 SILIDGFCKTNRVEKAHLLLEEMEEK-----GF--PPCPAAYCSLINGYGKAKRYEAANELFLELKEYC----G---CSS 476 (638)
Q Consensus 411 ~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~---~~~ 476 (638)
+.+...++..+++++|..+++...+. |. +.-..+++.+...|...|++++|.++++.+.... . .-.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 55667788889999998888865432 10 1123456667777777777777777776665421 1 111
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 006614 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKK----LRC-KPD-VYTYNALMSGMVRAGMIDDAYSLLRRME 539 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (638)
...++.|...|.+.+++++|.++|.+... .|. .|+ ..+|..|...|...|++++|.++.+...
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 23345555555555555555555554321 110 111 2344445555555555555555444433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.5e-07 Score=89.96 Aligned_cols=347 Identities=14% Similarity=0.168 Sum_probs=214.9
Q ss_pred ccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHcC
Q 006614 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRST--------CVMGPSVLSEIVNILGKA 173 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 173 (638)
.++.+.|.+-.+.+ .+..+|..|++.+.+.++.+-|.-.+..|.... ...+...-..+.....+.
T Consensus 741 iG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieL 813 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIEL 813 (1416)
T ss_pred eccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHH
Confidence 35566665544432 256799999999999999998887777664320 011112223344455678
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 006614 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRL 253 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 253 (638)
|..++|+.+|.+-+.. ..|=..|-..|.+++|+++-+.--+.. =..||......+-..++.+.|++.
T Consensus 814 gMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH----Lr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH----LRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee----hhhhHHHHHHHHHhhccHHHHHHH
Confidence 9999999999998763 445566777899999999876543322 234666666667777888888887
Q ss_pred HHHHH----------HCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006614 254 FDEMK----------ENG---------LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA 314 (638)
Q Consensus 254 ~~~m~----------~~g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 314 (638)
|++.- ... -..|...|......+-..|+.+.|+.+|....+ |-++++..|-+
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence 76432 110 112344455555555667888888888876543 55667777888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHH----
Q 006614 315 GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASE---- 390 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~---- 390 (638)
|+.++|-++-++- -|...+..+.+.|-..|++.+|..+|.+... +...|+. |+.++..+.
T Consensus 952 Gk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRl-cKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 952 GKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRL-CKENDMKDRLANL 1015 (1416)
T ss_pred cCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHH-HHhcCHHHHHHHH
Confidence 8888888877653 2667778899999999999999999987643 2222222 222222221
Q ss_pred -----------HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHhC--CCCCCHHHHHHHH
Q 006614 391 -----------ASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEE--------MEEK--GFPPCPAAYCSLI 449 (638)
Q Consensus 391 -----------~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~--~~~~~~~~~~~li 449 (638)
+..+|++.. . -+...+..|-+.|.+.+|+++--+ ++.. .-..|+...+...
T Consensus 1016 al~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rca 1087 (1416)
T KOG3617|consen 1016 ALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCA 1087 (1416)
T ss_pred HhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 122222221 1 112234456677777777665322 1222 2234667777777
Q ss_pred HHHHccCCHHHHHHHHHHHHHc----------C----------------CCCc----HHHHHHHHHHHHccCCHHHHHHH
Q 006614 450 NGYGKAKRYEAANELFLELKEY----------C----------------GCSS----ARVYAVMIKHFGKCGRLSDAVDL 499 (638)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~~~~~----------~----------------~~~~----~~~~~~li~~~~~~g~~~~A~~~ 499 (638)
+.++...++++|..++....+. + ..|+ ..+...+...|.++|.+..|-+-
T Consensus 1088 dFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKK 1167 (1416)
T KOG3617|consen 1088 DFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKK 1167 (1416)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 7778788888877776544321 1 1122 23456677777888887776665
Q ss_pred HH
Q 006614 500 FN 501 (638)
Q Consensus 500 ~~ 501 (638)
|.
T Consensus 1168 fT 1169 (1416)
T KOG3617|consen 1168 FT 1169 (1416)
T ss_pred Hh
Confidence 54
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-06 Score=88.83 Aligned_cols=147 Identities=18% Similarity=0.178 Sum_probs=96.1
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006614 476 SARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILN 555 (638)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 555 (638)
.+.+|+.+..+-...|...+|++-|-+. .|...|.-++....+.|.+++-..++....+..-+|...+ .|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHH
Confidence 3556777777777777777777666432 3567788888888899999998888888887766776665 5777
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--------------------CCCC
Q 006614 556 GLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAK--------------------GFEY 615 (638)
Q Consensus 556 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--------------------~~~p 615 (638)
+|++.++..+-.+++. .||......+.+-|...|.++.|.-+|...... .-.-
T Consensus 1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7888777766544432 244444444555555555554444333221100 0112
Q ss_pred CHHhHHHHHHHHhccCCccCCC
Q 006614 616 DQITYSSILEAVGKVDEDRNPT 637 (638)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~a~ 637 (638)
+..||..+-.+|...++++.|+
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHHH
Confidence 4568999999999888888765
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-07 Score=82.60 Aligned_cols=292 Identities=14% Similarity=0.095 Sum_probs=200.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHH-HHHHH
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS-MILML 205 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~ 205 (638)
-+++.+..+.+..++.+|++++....+.. +.+...++.+..+|....++..|...|+++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 46677777888999999999999887753 447778888999999999999999999999876 455555543 35778
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH--HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA--FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
.+.+.+.+|+.+...|... ++...-..-+.+ ....+++..+..++++....| +..+.+.......+.|+++
T Consensus 89 Y~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 8899999999999988653 332222222222 335788889999999887543 6667777777888999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CCH--------------
Q 006614 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK-------------PDI-------------- 336 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------------p~~-------------- 336 (638)
.|.+-|+...+.+---....|+..+ +..+.|+++.|++...+++++|++ ||+
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 9999999998875443566777655 455788999999999999987754 121
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006614 337 -VLINNLINVLGRAGRLEDALKLFNKMEAL-QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILI 414 (638)
Q Consensus 337 -~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li 414 (638)
..+|.-...+.+.|+++.|.+-+-.|.-+ ....|++|...+.-.- ..+++.+. ..-+.-+.... +-...||..++
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g-~~KLqFLL~~n-PfP~ETFANlL 317 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEG-FEKLQFLLQQN-PFPPETFANLL 317 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCcccc-HHHHHHHHhcC-CCChHHHHHHH
Confidence 12333344556778888888887777432 2334556654443211 11222222 22223333322 23456777777
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 006614 415 DGFCKTNRVEKAHLLLEE 432 (638)
Q Consensus 415 ~~~~~~g~~~~A~~~~~~ 432 (638)
-.||++.-++.|-.++.+
T Consensus 318 llyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHhhhHHHhHHHHHHhh
Confidence 778888777777777654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-08 Score=101.34 Aligned_cols=244 Identities=19% Similarity=0.195 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhC-----CC-CCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHhC-----CCCC
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSR-----KC-KPTANT-YNSMILMLMQEGYYEKIHELYNEMCNE-----GNCF 228 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~ 228 (638)
.++..+...|...|++++|..++++.... |. .|.+.+ .+.+...|...+++.+|..+|+++... |...
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555667777777777777777665443 11 223332 233556666777777777777766532 2222
Q ss_pred CC-HHHHHHHHHHHHccCChHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC
Q 006614 229 PD-TVTYSALISAFGKLGRDISAIRLFDEMKEN-----GL-QPTA-KIYTTLVSIYFKLGEVEKALGLVQEMKGK---GC 297 (638)
Q Consensus 229 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~ 297 (638)
|. ..+++.|..+|.+.|++++|...++...+. |. .|.+ ..++.++..+...+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22 234556666677777776666666554421 11 1111 12444555566666666666666554331 01
Q ss_pred CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C--CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006614 298 AL----TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG----C--KP-DIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 298 ~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
.+ -..+++.|...|.+.|++++|.++|++.+... - .+ ....++.+...|.+.+.+.+|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~-- 437 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD-- 437 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH--
Confidence 11 13456666666666666666666666655421 1 11 123445555556666666666666655432
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 367 CKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEME 434 (638)
Q Consensus 367 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 434 (638)
+. .....+.+-...+|..|...|.+.|+++.|.++.+...
T Consensus 438 ---------------------------i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 ---------------------------IM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred ---------------------------HH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11 11111112234678888888888888888888887765
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-09 Score=95.81 Aligned_cols=229 Identities=14% Similarity=0.098 Sum_probs=163.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006614 375 NTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGK 454 (638)
Q Consensus 375 ~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 454 (638)
+.+-+.|++.|-+.++ ++.++.-.+. .|-+.||..|-..|.+..+.+.|+.++.+-.+. +|-++....-..+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~A-ekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRA-EKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhh-HHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 4455566666666555 4444444443 455667777778888888888888888877765 25555555566677777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 006614 455 AKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSL 534 (638)
Q Consensus 455 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 534 (638)
.++.++|.++++...+. .+.++.....+...|.-.++++-|++++.++.+.|+ -+...|+.+.-+|...++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 78888888888887775 445666666777777778888888888888888875 3666777777788888888888888
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 535 LRRMEEDGCVPD--INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 535 ~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
|.+.+..--.|+ ...|-.+.......||+.-|.+.|+-....+- -+...++.+.-.-.+.|+.++|..+++....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 888776543344 44566667777788888888888888776432 2456778777777788888888888887764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.6e-08 Score=93.67 Aligned_cols=198 Identities=13% Similarity=0.057 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+..++.+.|++++|...|++.++.. +.++..|+.+...+...|++++|...|++..+..+. +..+|..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4567777778888888888888888887753 456778888888888888888888888888776433 56677778888
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+...|++++|++.|+...+..+ +......+.......++.++|.+.|++..... .|+...+ .+... ..|+...
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P---~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~~--~lg~~~~ 214 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDP---NDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIVEF--YLGKISE 214 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHHHH--HccCCCH
Confidence 8888888888888888887654 22222222223345677888888886655432 2232221 22222 3344433
Q ss_pred HHHHHHHHHhC---CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006614 285 ALGLVQEMKGK---GCA---LTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC 332 (638)
Q Consensus 285 A~~~~~~m~~~---~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 332 (638)
+ +.++.+.+. .+. .....|..+...+.+.|++++|...|++..+.++
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3 233333321 110 1234566777777777777777777777776543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.2e-08 Score=84.31 Aligned_cols=197 Identities=11% Similarity=-0.009 Sum_probs=118.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
...+.-.|.+.|+...|..-+++.++..+. +..+|..+...|.+.|+.+.|.+.|++.++..+ .+....|.....+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p--~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAP--NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--CccchhhhhhHHHH
Confidence 344455566666666666666666665322 455666666666666666666666666666554 45555666666666
Q ss_pred ccCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006614 243 KLGRDISAIRLFDEMKENGLQ-PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAY 321 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 321 (638)
..|++++|.+.|++......- --..+|..+.-+..+.|+.+.|.+.|++.++.... ...+.-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 666666666666666654211 12445666666666666666666666666665443 3445555566666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 322 GLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 322 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
.+++.....+. ++..+.-..|..-...|+.+.+.+.=..+..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666666554 5666666666666666666665555444433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.7e-07 Score=91.96 Aligned_cols=494 Identities=10% Similarity=0.008 Sum_probs=267.2
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006614 106 NVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQ 185 (638)
Q Consensus 106 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 185 (638)
..|+..|-.+.+.. +.=...|..|...|....+...|.+.|+...+.+ ..+..........|++..+++.|..+.-.
T Consensus 475 ~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 475 ALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 34444444444333 1123577778888877777788888888887653 45667778888999999999999988544
Q ss_pred hhhCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 006614 186 IKSRKC-KPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP 264 (638)
Q Consensus 186 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 264 (638)
..+... ..-...|..+.-.|.+.+++..|+..|+...+..+ .|...|..++.+|...|++..|+++|.+.... .|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP--kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP--KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc--hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 433311 11222344455667788999999999999999876 78899999999999999999999999988774 34
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------c
Q 006614 265 TA-KIYTTLVSIYFKLGEVEKALGLVQEMKGKG------CALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK-------E 330 (638)
Q Consensus 265 ~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~ 330 (638)
+. ..---..-.-+..|.+.+|+..+....... ..--..++..+...+...|-...|..+++..++ +
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 32 222223445567899999999888876431 111122333333333344444444444444332 2
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh---HHHHHHHHHHHHhCCCCCCH
Q 006614 331 GCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAP---ASEASAWFEKMKANGVLPSP 407 (638)
Q Consensus 331 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~---~~~~~~~~~~m~~~~~~~~~ 407 (638)
...-+...|-.+. .|..+|-... .. .|+......+....-..+.. +-.....-..........+.
T Consensus 708 ~~~~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~ 775 (1238)
T KOG1127|consen 708 SLQSDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHM 775 (1238)
T ss_pred hhhhhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhcc
Confidence 1111222222222 2222332222 00 12222222222111111111 00000000000000111123
Q ss_pred HHHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHH
Q 006614 408 FTYSILIDGFCK--------TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARV 479 (638)
Q Consensus 408 ~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 479 (638)
.+|..++..|.+ ..+...|+..+++.++.. ..+..+|+.|.-. ...|++.-|...|-+.... .+.+..+
T Consensus 776 ~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~ 852 (1238)
T KOG1127|consen 776 YPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQ 852 (1238)
T ss_pred chHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhh
Confidence 344444443333 122346777777776653 4556666666554 5556777777766665543 3345566
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH--HHH--CCCCCCHHHHHHHHH
Q 006614 480 YAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRR--MEE--DGCVPDINSHNIILN 555 (638)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--m~~--~~~~p~~~~~~~l~~ 555 (638)
|..+.-.+.+..+++-|...|...+... +.|...|-.........|+.-++..+|.. ... .|-.|+..-|-....
T Consensus 853 W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te 931 (1238)
T KOG1127|consen 853 WLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATE 931 (1238)
T ss_pred eeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHH
Confidence 7667777777788888888888777653 33455555444444566776666666654 111 233344333333333
Q ss_pred HHHhcCChHHHHHHHHHhhh---------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHHhHHH
Q 006614 556 GLAKSGGPKRAMEIFTKMQH---------SEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA-KGFEYDQITYSS 622 (638)
Q Consensus 556 ~~~~~g~~~~A~~~~~~m~~---------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ 622 (638)
.-...|+.++-+...+++.. .+..-+...|.+.....-+.+.+.+|.++..+... ...+-|..+|+.
T Consensus 932 ~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynv 1008 (1238)
T KOG1127|consen 932 IHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNV 1008 (1238)
T ss_pred HHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 33444554443333333221 12222345666666666666777777666665442 112344445553
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.8e-08 Score=83.94 Aligned_cols=208 Identities=18% Similarity=0.061 Sum_probs=174.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006614 409 TYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFG 488 (638)
Q Consensus 409 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 488 (638)
+...+.-.|.+.|+...|..-+++.++.. |.+..++..+...|.+.|+.+.|.+-|++.... .+.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL-APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-CCCccchhhhhhHHHH
Confidence 34556778999999999999999999987 778889999999999999999999999999986 4567788899999999
Q ss_pred ccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006614 489 KCGRLSDAVDLFNEMKKLRC-KPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAM 567 (638)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 567 (638)
..|++++|...|++....-. .--..||..+.-+..+.|+.+.|.+.|++.++... -...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHH
Confidence 99999999999999887521 11256788888888899999999999999998742 24567778889999999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 006614 568 EIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSS 622 (638)
Q Consensus 568 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 622 (638)
.+++.....+. ++..+.-..|+.-.+.|+.+.|.++=..+.+. -|...-|..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 99999988654 88988888899889999999998877776643 455444433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4e-08 Score=94.07 Aligned_cols=233 Identities=15% Similarity=0.056 Sum_probs=166.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC-C--CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc
Q 006614 132 IRCLDETRMIGVMWKSIQDMVRSTC-V--MGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQE 208 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 208 (638)
+......+..+.++..+.+++.... . -....|......+.+.|+.++|...|.+..+..+. +...|+.+...+...
T Consensus 33 ~~~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 33 AVPLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQA 111 (296)
T ss_pred ccccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHC
Confidence 3344455667788888888775421 1 22456888888999999999999999999988543 789999999999999
Q ss_pred CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006614 209 GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGL 288 (638)
Q Consensus 209 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 288 (638)
|++++|.+.|++..+..+ .+..+|..+...+...|++++|.+.|+...+.. |+..............++.++|.+.
T Consensus 112 g~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDP--TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKEN 187 (296)
T ss_pred CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHH
Confidence 999999999999998775 567788889999999999999999999999863 4433222223334567889999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 289 VQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE---GCK---PDIVLINNLINVLGRAGRLEDALKLFNKM 362 (638)
Q Consensus 289 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 362 (638)
+.+..... .|+...+ .+ .....|+..++ ..+..+.+. .+. ....+|..+...+.+.|++++|...|++.
T Consensus 188 l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 188 LKQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 97765432 2232222 22 23345555444 344444432 111 13457889999999999999999999999
Q ss_pred HHCCCCCChhhHH
Q 006614 363 EALQCKPNVVTYN 375 (638)
Q Consensus 363 ~~~~~~p~~~~~~ 375 (638)
...++ |+.+.+.
T Consensus 263 l~~~~-~~~~e~~ 274 (296)
T PRK11189 263 LANNV-YNFVEHR 274 (296)
T ss_pred HHhCC-chHHHHH
Confidence 87552 3444443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.9e-06 Score=77.27 Aligned_cols=302 Identities=14% Similarity=0.049 Sum_probs=189.2
Q ss_pred CCHHHHHHHHHHHHc--cCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006614 229 PDTVTYSALISAFGK--LGRDISAIRLFDEMKEN-GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT 305 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 305 (638)
|...+...++.+++. .++...|.+.+-.+... -++-|+.....+...+...|+.++|+..|++..-.++. +.....
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD 270 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMD 270 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHH
Confidence 444555566665554 35555555555444433 24557778888999999999999999999888765321 222233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHHhc
Q 006614 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVI-KSLFES 384 (638)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll-~~~~~~ 384 (638)
...-.+.+.|+++....+...+....-. ....|-.-.......+++..|+.+-++.++.+ |+.+.-..+- ..+...
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhc
Confidence 3344456778888777777776654211 22233333445556788888888888877643 3333332332 334445
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-ccCCHHHHH
Q 006614 385 KAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLI-NGYG-KAKRYEAAN 462 (638)
Q Consensus 385 ~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~ 462 (638)
+++.++ ...|+....-. +.+...|.-++.+|...|++.+|..+-++..+. ++.+..+.+.+. ..+. ...--++|.
T Consensus 348 ~R~~~A-~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 348 ERHTQA-VIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred cchHHH-HHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 555555 44455544331 346778888888888888888888777766554 244555555553 2222 222346777
Q ss_pred HHHHHHHHcCCCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006614 463 ELFLELKEYCGCSS-ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 463 ~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (638)
++++...+. .|+ ....+.+...+...|..++++.++++.... .||....+.|.+.+.....+.+|++.|..++..
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 777776663 232 344566667777778888888888777663 577777777777777777888888877777764
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-05 Score=78.10 Aligned_cols=439 Identities=12% Similarity=0.127 Sum_probs=225.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+-|..+|+.|++-+..+ -++++.+.+++++.- .+..++.|..-|..-.+.++++..+.+|.+.+.. ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 56889999999888776 899999999999874 4567788999999999999999999999998776 3467777766
Q ss_pred HHHHHh-cCCHhH----HHHHHHHHHh-CCCCCCCHHHHHHHHHHH---------HccCChHHHHHHHHHHHHCCCCCCH
Q 006614 202 ILMLMQ-EGYYEK----IHELYNEMCN-EGNCFPDTVTYSALISAF---------GKLGRDISAIRLFDEMKENGLQPTA 266 (638)
Q Consensus 202 ~~~~~~-~g~~~~----A~~~~~~~~~-~~~~~~~~~~~~~l~~~~---------~~~g~~~~A~~~~~~m~~~g~~~~~ 266 (638)
+.---+ .|+... -..-|+-... .|........|+..+..+ ....+++...+++.++....
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP----- 167 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP----- 167 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc-----
Confidence 643222 222222 2222332222 221111222233333221 11223333444444444321
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHH
Q 006614 267 KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK--EGCKPDIVLINNLIN 344 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~li~ 344 (638)
.+++++-.+-|....+. .|..|-..++ --+...+..|.++++++.. +|...+..+
T Consensus 168 ------------m~nlEkLW~DY~~fE~~---IN~~tarK~i--~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~------ 224 (656)
T KOG1914|consen 168 ------------MHNLEKLWKDYEAFEQE---INIITARKFI--GERSPEYMNARRVYQELQNLTRGLNRNAPA------ 224 (656)
T ss_pred ------------cccHHHHHHHHHHHHHH---HHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHhhhcccCCC------
Confidence 12222222222222211 1222222222 1233445566666666543 222111111
Q ss_pred HHHccCCHH--HHHHHHHHHHH----CCCC-CC--------hhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHH
Q 006614 345 VLGRAGRLE--DALKLFNKMEA----LQCK-PN--------VVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFT 409 (638)
Q Consensus 345 ~~~~~g~~~--~A~~~~~~~~~----~~~~-p~--------~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~ 409 (638)
.-..|-.+ ...+++....+ .+.. -+ ..+|+..+..+. ...+.-.....-+..
T Consensus 225 -vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~---~~peiWy~~s~yl~~--------- 291 (656)
T KOG1914|consen 225 -VPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLG---YHPEIWYDYSMYLIE--------- 291 (656)
T ss_pred -CCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHH---------
Confidence 00001111 11111111111 1111 00 001111111100 000000000000000
Q ss_pred HHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCcHHH
Q 006614 410 YSILIDGFCKTNR-------VEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAK---RYEAANELFLELKEYCGCSSARV 479 (638)
Q Consensus 410 ~~~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~ 479 (638)
.-+.+...|+ -+++..+++...+.-...+.-+|..+.+.--..- +.+.....++++...-...-..+
T Consensus 292 ---~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv 368 (656)
T KOG1914|consen 292 ---ISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLV 368 (656)
T ss_pred ---hhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCcee
Confidence 0011222222 3455555555544322233344444433222111 35566666666665444444556
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006614 480 YAVMIKHFGKCGRLSDAVDLFNEMKKLRCKP-DVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA 558 (638)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 558 (638)
|...++.--+..-++.|..+|.+..+.+..+ ++..+++++.-+| .++.+-|.++|+--+++ ..-+..--...+.-+.
T Consensus 369 ~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 369 YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLS 446 (656)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHH
Confidence 7777777777777888888888888776666 6677777777655 57778888888766554 1223333455677777
Q ss_pred hcCChHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 559 KSGGPKRAMEIFTKMQHSEIKPD--AVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 559 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
..++-..|..+|++....++.|+ ..+|..++.-=+.-|+.+.+.++-+++..
T Consensus 447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88888888888888887755554 46788888888888888888888777664
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.3e-07 Score=88.87 Aligned_cols=156 Identities=13% Similarity=0.032 Sum_probs=81.7
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH----ccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG----KLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYF 277 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~ 277 (638)
..+...|++++|.+.+++.....+ .|...+.. ...+. ..+..+.+.+.++.. .+..| .......+...+.
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDYP--RDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHH
Confidence 334455666666666666665443 23333321 11111 223334444444331 11122 2233344555666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCH--HHHHHHHHHHHccCCHHH
Q 006614 278 KLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK-PDI--VLINNLINVLGRAGRLED 354 (638)
Q Consensus 278 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~--~~~~~li~~~~~~g~~~~ 354 (638)
..|++++|.+.+++..+..+. +...+..+...+...|++++|...+++....... |+. ..|..+...+...|++++
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 667777777777666665433 4555666666666777777777776666654221 222 234456666667777777
Q ss_pred HHHHHHHHHH
Q 006614 355 ALKLFNKMEA 364 (638)
Q Consensus 355 A~~~~~~~~~ 364 (638)
|..++++...
T Consensus 205 A~~~~~~~~~ 214 (355)
T cd05804 205 ALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHhc
Confidence 7777776643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.8e-05 Score=80.80 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGV 143 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~ 143 (638)
..++.+||++.++|...++-.+
T Consensus 869 ~~d~a~hnAlaKIyIDSNNnPE 890 (1666)
T KOG0985|consen 869 SQDPATHNALAKIYIDSNNNPE 890 (1666)
T ss_pred CcchHHHhhhhheeecCCCChH
Confidence 4688999999999987665543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.2e-07 Score=80.37 Aligned_cols=417 Identities=12% Similarity=0.084 Sum_probs=236.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH-HHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA-LISA 240 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-l~~~ 240 (638)
-+.+++..+.+..++++|++++..-.++..+ +......+...|....++..|-+-|+++.... |...-|.. -...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHHH
Confidence 3566677778889999999999888887433 77778888899999999999999999998754 55555543 3566
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV--SIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE 318 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 318 (638)
+.+.+.+.+|+++...|.+. |+...-..-+ ......+++..+..++++....| +..+.+...-...+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 77889999999999888763 2222222222 23345788888888888877543 4455555555667999999
Q ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHH-----HHHHHHhcCChHHHHH
Q 006614 319 DAYGLFMNMLKE-GCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNT-----VIKSLFESKAPASEAS 392 (638)
Q Consensus 319 ~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-----ll~~~~~~~~~~~~~~ 392 (638)
+|.+-|+...+- |.. ....|+..+.. .+.|+++.|++...++.++|++-.+. +++ .+. .-..|+..
T Consensus 162 aAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiD-vrsvgNt~---- 233 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGID-VRSVGNTL---- 233 (459)
T ss_pred HHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCc-hhcccchH----
Confidence 999999999885 555 56677765544 56789999999999999887652111 000 000 00001110
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 006614 393 AWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK-GFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY 471 (638)
Q Consensus 393 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (638)
.|..++ -...+|.-...+.+.|+++.|.+.+-.|--+ ....|+.|...+.-.- -.+++.+..+-+.-+...
T Consensus 234 ----~lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 234 ----VLHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ 305 (459)
T ss_pred ----HHHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc
Confidence 000000 1223444445566777777777766666422 1234555555443221 123344444444444444
Q ss_pred CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCCHHH
Q 006614 472 CGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRC-KPDVYTYNALMSGMV-RAGMIDDAYSLLRRMEEDGCVPDINS 549 (638)
Q Consensus 472 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~ 549 (638)
.. -...++..++-.||+..-++-|-.++.+-..... -.+...|+. +.++. ..-..++|.+-++.+... +.-....
T Consensus 306 nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~-l~~kLRk 382 (459)
T KOG4340|consen 306 NP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGM-LTEKLRK 382 (459)
T ss_pred CC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHH
Confidence 22 3455666666677777777777666655332211 123344443 23332 233445554444433321 0000000
Q ss_pred HHHHHHHHHhcCC---hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 550 HNIILNGLAKSGG---PKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAK 611 (638)
Q Consensus 550 ~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 611 (638)
..+-+.--....+ ...|++-+++..+.- ....-+-.+.+++..++..+.++|..-.+.
T Consensus 383 lAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y----LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 383 LAIQVQEARHNRDDEAIRKAVNEYDETLEKY----LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 1111111111111 112222223222210 112233445678888999999998887754
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.6e-06 Score=79.82 Aligned_cols=104 Identities=14% Similarity=0.106 Sum_probs=72.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCH
Q 006614 133 RCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT-ANTYNSMILMLMQEGYY 211 (638)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 211 (638)
++....|+++.|+.+|.+.+... +++...|+.-..+|+..|++++|++--.+-.+. .|+ ...|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 44566778888888887776653 446666777777788888888877766665554 333 34677777777777888
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006614 212 EKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
++|+.-|.+-++..+ .+...++.+..++
T Consensus 87 ~eA~~ay~~GL~~d~--~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDP--SNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhcCC--chHHHHHhHHHhh
Confidence 888888887777654 4566666666666
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-06 Score=83.85 Aligned_cols=201 Identities=11% Similarity=-0.028 Sum_probs=134.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTC-VMGPS-VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
....|..+...+...|+.+++.+.+....+... ..+.. ........+...|++++|...+++..+..+. +...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-
Confidence 355677777777777888887666666554321 22322 2223344556788999999999998876332 4444442
Q ss_pred HHHHHh----cCCHhHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006614 202 ILMLMQ----EGYYEKIHELYNEMCNEGNCFPD-TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 202 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
...+.. .+..+.+.+.++...... |+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPEN---PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 223332 344555555554421211 33 3445566678888999999999999998864 34567788889999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 277 FKLGEVEKALGLVQEMKGKGCA-LT--VYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
...|++++|...+++....... ++ ...|..+...+...|++++|..++++....
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 9999999999999888765332 22 234557788899999999999999998654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.3e-06 Score=79.54 Aligned_cols=383 Identities=13% Similarity=0.045 Sum_probs=221.0
Q ss_pred ccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHH
Q 006614 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG-PSVLSEIVNILGKAKMVNKAL 180 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 180 (638)
.++.+.|+..|.-+.... ++|.+.|..-..+|+..|+|++|.+--.+..+. .|+ +..|+....++.-.|++++|+
T Consensus 15 ~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHH
Confidence 367889999999887666 668999999999999999999998877777663 344 568999999999999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHH---HHHHHHHHhCCCC--CCCHHHHHHHHHHHHcc----------C
Q 006614 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKI---HELYNEMCNEGNC--FPDTVTYSALISAFGKL----------G 245 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~----------g 245 (638)
.-|.+-++.... +...++-+..++.......+. -.++..+...... ......|..++..+-+. .
T Consensus 91 ~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~ 169 (539)
T KOG0548|consen 91 LAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP 169 (539)
T ss_pred HHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH
Confidence 999999887433 666777777777211100000 0011111100000 00011122222221110 0
Q ss_pred ChHHHHHHHHH-----HHHCC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006614 246 RDISAIRLFDE-----MKENG-------LQP------------T----------AKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 246 ~~~~A~~~~~~-----m~~~g-------~~~------------~----------~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
++..|.-.+.. +...| ..| | ..-...+.+...+..+++.|++-+..
T Consensus 170 r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~ 249 (539)
T KOG0548|consen 170 RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAK 249 (539)
T ss_pred HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11111111100 00000 011 0 11234566667777778888888877
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHccCCHHHHHHHHHHHHH
Q 006614 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLIN-------NLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-------~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
..+.. -+...++....+|...|.+.++....+...+.|.. ...-|+ .+..+|.+.++++.+...|.+...
T Consensus 250 a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 250 ALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 77665 35566666777788888888777777776665533 222222 233355666777888888877655
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 365 LQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSP-FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA 443 (638)
Q Consensus 365 ~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 443 (638)
....|+..+-..-.. ++ ....+.. .-+.|.. .-...-...+.+.|++..|+..|.+++... |.|..
T Consensus 327 e~Rt~~~ls~lk~~E---------k~-~k~~e~~--a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~ 393 (539)
T KOG0548|consen 327 EHRTPDLLSKLKEAE---------KA-LKEAERK--AYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDAR 393 (539)
T ss_pred hhcCHHHHHHHHHHH---------HH-HHHHHHH--HhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhH
Confidence 443433322211111 11 1111111 1112221 111122455677788888888888877776 67777
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 444 AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
.|+...-+|.+.|.+..|++-.+...+. .++....|.-=..++....++++|++.|.+..+.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777888777777776666664 2333444444445555556677777777766664
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-05 Score=91.52 Aligned_cols=370 Identities=12% Similarity=0.024 Sum_probs=193.4
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDT--VTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
....+...|++.+|...+..... .+. .........+...|+++.+...++.+.......+..........+..
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d-----~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGD-----AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCC-----HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 34445556666666554433311 111 11112223344456666666665554221111122223334444556
Q ss_pred cCCHHHHHHHHHHHHhCCC------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHH
Q 006614 279 LGEVEKALGLVQEMKGKGC------ALT--VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDI----VLINNLINVL 346 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~~~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~ 346 (638)
.|++++|...+......-. .+. ......+...+...|++++|...+++..+.-...+. ...+.+...+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 6777777766665543200 011 111122233445677777777777766553111121 2334455556
Q ss_pred HccCCHHHHHHHHHHHHHCCCC---C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHh----CCCC--C-CHHHHHHHH
Q 006614 347 GRAGRLEDALKLFNKMEALQCK---P--NVVTYNTVIKSLFESKAPASEASAWFEKMKA----NGVL--P-SPFTYSILI 414 (638)
Q Consensus 347 ~~~g~~~~A~~~~~~~~~~~~~---p--~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~----~~~~--~-~~~~~~~li 414 (638)
...|++++|...+++.....-. + .......+...+...|+..++ ...+++... .+.. + ....+..+.
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A-~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAA-YETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 6677777777776666432110 1 112233334445556666555 443333222 2211 1 123344555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc-HHHH-----HHHH
Q 006614 415 DGFCKTNRVEKAHLLLEEMEEKG--FPP--CPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSS-ARVY-----AVMI 484 (638)
Q Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~-----~~li 484 (638)
..+...|++++|...+.+..... ..+ ....+..+...+...|+.++|.+.+........... ...+ ...+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 66677789998888888765421 111 233444566677788889888888887754211110 0101 1122
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHH
Q 006614 485 KHFGKCGRLSDAVDLFNEMKKLRCKPDV---YTYNALMSGMVRAGMIDDAYSLLRRMEED----GCVPD-INSHNIILNG 556 (638)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~ 556 (638)
..+...|+.+.|...+............ ..+..+..++...|++++|...+++.... |..++ ..+...+..+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 3445578888888887765442211111 11345666777888999998888887753 22222 3456666777
Q ss_pred HHhcCChHHHHHHHHHhhhC
Q 006614 557 LAKSGGPKRAMEIFTKMQHS 576 (638)
Q Consensus 557 ~~~~g~~~~A~~~~~~m~~~ 576 (638)
+...|+.++|...+.+..+.
T Consensus 741 ~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88889999999998888763
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-05 Score=72.11 Aligned_cols=331 Identities=12% Similarity=0.044 Sum_probs=207.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHH-HHH
Q 006614 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTY-NSM 201 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l 201 (638)
.++.-...+-+.+..+|++.+|+.-|...++.+ +.+-.++..-...|...|+..-|+.-+.++.+. +||-..- ..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 345556677888889999999999999887632 222234445566788889999999999998887 5665432 334
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE 281 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 281 (638)
...+.++|++++|..-|+.+++..+ +..+ ...+..+.--.++-+.+ ...+..+...|+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~---s~~~---~~eaqskl~~~~e~~~l----------------~~ql~s~~~~GD 170 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEP---SNGL---VLEAQSKLALIQEHWVL----------------VQQLKSASGSGD 170 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCC---Ccch---hHHHHHHHHhHHHHHHH----------------HHHHHHHhcCCc
Confidence 5678899999999999999998764 2211 11111111111222222 223344556788
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 282 VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 282 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 361 (638)
...|+.....+++..+- |...|..-..+|...|++..|+.-++...+..- -+..++-.+...+...|+.+.++...++
T Consensus 171 ~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 88888888888876543 777788888889999999988887777666532 3667777778888888999998888888
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006614 362 MEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPC 441 (638)
Q Consensus 362 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 441 (638)
..+.+ ||....-..-..+-+ +.+.++.| ......++|.++++-.+...+......
T Consensus 249 CLKld--pdHK~Cf~~YKklkK-------v~K~les~----------------e~~ie~~~~t~cle~ge~vlk~ep~~~ 303 (504)
T KOG0624|consen 249 CLKLD--PDHKLCFPFYKKLKK-------VVKSLESA----------------EQAIEEKHWTECLEAGEKVLKNEPEET 303 (504)
T ss_pred HHccC--cchhhHHHHHHHHHH-------HHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcCCccc
Confidence 87744 665433221111100 01111111 123345666666666666665532212
Q ss_pred HH---HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 442 PA---AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 442 ~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
.. .+..+-.++...+++.+|++.-.++... .+.|+.++..-..+|.-...++.|+.-|+...+.
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~-d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI-DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHhc-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 22 2333444455566677777666666653 2334666666666666666667777666666654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-05 Score=90.34 Aligned_cols=372 Identities=12% Similarity=-0.038 Sum_probs=224.9
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 238 ISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRV 317 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 317 (638)
...+...|++.+|........... .-..............|+++.+...++.+.......+..........+...|++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 344555666666655443321110 001112223344556788888888777653221111222233444556688999
Q ss_pred HHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcC
Q 006614 318 EDAYGLFMNMLKEGC------KPD--IVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNV----VTYNTVIKSLFESK 385 (638)
Q Consensus 318 ~~A~~~~~~~~~~~~------~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~ 385 (638)
++|...+......-. .+. ......+...+...|++++|...++.........+. ...+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 999999988765311 111 122233445667899999999999988663211121 23344445556678
Q ss_pred ChHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC---CHHHHHHHHHHHH
Q 006614 386 APASEASAWFEKMKAN----GVL-PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK----GFPP---CPAAYCSLINGYG 453 (638)
Q Consensus 386 ~~~~~~~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~---~~~~~~~li~~~~ 453 (638)
+..++ ...+++.... |.. ....++..+...+...|+++.|...+++.... +... ....+..+...+.
T Consensus 506 ~~~~A-~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 506 ELARA-LAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CHHHH-HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 87776 5555555432 211 11234455667788999999999998886542 2111 2234555666777
Q ss_pred ccCCHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHHHH-----HHHHHHHH
Q 006614 454 KAKRYEAANELFLELKEY----CGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCK-PDVYTY-----NALMSGMV 523 (638)
Q Consensus 454 ~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~-----~~l~~~~~ 523 (638)
..|++++|...+.+.... +.......+..+...+...|++++|...+++.....-. .....+ ...+..+.
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 889999999999887653 11112344555667788899999999999887543111 111111 11224445
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHHcc
Q 006614 524 RAGMIDDAYSLLRRMEEDGCVPDI---NSHNIILNGLAKSGGPKRAMEIFTKMQHS----EIKPD-AVSYNTILGCLSRA 595 (638)
Q Consensus 524 ~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~ 595 (638)
..|+.+.|...+............ ..+..+...+...|++++|...+++.... |..++ ..+...+..++.+.
T Consensus 665 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 688999999998776543211111 12345677788999999999999998752 33222 34566777889999
Q ss_pred CCHHHHHHHHHHHHhCC
Q 006614 596 GMFEEAARLMKDMNAKG 612 (638)
Q Consensus 596 g~~~~A~~~~~~m~~~~ 612 (638)
|+.++|.+.+.+..+..
T Consensus 745 G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 745 GRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988753
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.1e-05 Score=80.62 Aligned_cols=469 Identities=10% Similarity=0.009 Sum_probs=253.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 006614 141 IGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNE 220 (638)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 220 (638)
...+...|-+.++.. +.-...|..+...|....+...|.+.|.+.-+.... +...+-...+.|++...++.|.++.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 444444444444432 112245666666676666777777888777666432 666777777888888888888777433
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006614 221 MCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT 300 (638)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 300 (638)
.-+..+...-...|-...-.|...++...|..-|+...+.. +-|...|..+..+|...|++..|.++|.+....++ +
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP--~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP--L 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc--H
Confidence 33322111111223334445566777777777777777653 33677788888888888888888888877766532 2
Q ss_pred HHHHHH--HHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-------C
Q 006614 301 VYTYTE--LIKGLGRAGRVEDAYGLFMNMLKEG------CKPDIVLINNLINVLGRAGRLEDALKLFNKMEA-------L 365 (638)
Q Consensus 301 ~~~~~~--li~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~ 365 (638)
.+|.. ..-..+..|.+.+|+..+...+... -.--..++-.+...+.-.|-..+|..++++-.+ .
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 22222 2233566788888887777766431 111122333333333333444444444443322 1
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---H---HHHHHHHHHHhCCCC
Q 006614 366 QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRV---E---KAHLLLEEMEEKGFP 439 (638)
Q Consensus 366 ~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~~~~ 439 (638)
....+...|-.+-.+ -..|-+.. .. .|+.....++..-.-..+.. | -+.+.+-.-.+. .
T Consensus 708 ~~~~~~~~Wi~asda-----------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~ 772 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDA-----------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--A 772 (1238)
T ss_pred hhhhhHHHHHHHhHH-----------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--h
Confidence 111122222211111 11122222 11 22322222222212222221 1 111111111111 1
Q ss_pred CCHHHHHHHHHHHHc-------cC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006614 440 PCPAAYCSLINGYGK-------AK-RYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD 511 (638)
Q Consensus 440 ~~~~~~~~li~~~~~-------~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 511 (638)
.++.+|..++..|.+ .+ +...|...+....+. ...+..+|+.|.-. ...|.+.-|...|-+-.... +..
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~ 849 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTC 849 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccc
Confidence 223444444433332 22 334677888777765 34566777777655 56677777777776555442 456
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh----hCCCCCCHHHHHH
Q 006614 512 VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ----HSEIKPDAVSYNT 587 (638)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~~ 587 (638)
..+|..+.-.+.+..+++.|...|...+... +.|...|..........|+.-++..+|..-. ..|--|+...|-+
T Consensus 850 ~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c 928 (1238)
T KOG1127|consen 850 HCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLC 928 (1238)
T ss_pred hhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHH
Confidence 7788888888899999999999999988863 2356777666666667888888888888722 1344566666666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC---------CCCCCHHhHHHHHHHHhccCCcc
Q 006614 588 ILGCLSRAGMFEEAARLMKDMNAK---------GFEYDQITYSSILEAVGKVDEDR 634 (638)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~m~~~---------~~~p~~~~~~~l~~~~~~~g~~~ 634 (638)
...-....|+.++-+...+++-.. +.+-+...|........+.++++
T Consensus 929 ~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~ 984 (1238)
T KOG1127|consen 929 ATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYR 984 (1238)
T ss_pred HHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHH
Confidence 555566777776655544433221 23333445555555444444443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.8e-06 Score=81.16 Aligned_cols=266 Identities=19% Similarity=0.218 Sum_probs=162.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006614 272 LVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR 351 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 351 (638)
.+.+......|.+|+.+++.+..... -...|..+.+.|...|+++-|.++|-+. ..++..|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 45566677888889888888876643 3456777888899999999999988653 245677889999999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006614 352 LEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLE 431 (638)
Q Consensus 352 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 431 (638)
++.|.++-.+... .......|-.-..-+-..|+..++ ++++-.+ | .|+ ..|..|-+.|..+..+++.+
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~ea-eqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEA-EQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhh-hheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHHH
Confidence 9999988877643 333444554444445555555554 3332211 1 233 24677888888888777776
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH--------
Q 006614 432 EMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEM-------- 503 (638)
Q Consensus 432 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------- 503 (638)
+-.. ..-..|...+..-+-..|++..|...|-+... |..-+++|-..+-+++|.++-+.-
T Consensus 875 k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~ 942 (1636)
T KOG3616|consen 875 KHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKH 942 (1636)
T ss_pred HhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHH
Confidence 5432 12234566677778888999998888776544 455566676777777766654321
Q ss_pred ------HhCCCCCCHHHH------HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006614 504 ------KKLRCKPDVYTY------NALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 504 ------~~~~~~p~~~~~------~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
+..|-..-+... ..-++..+..+.++-|.++-+-..+.. .|.+ ...+...+-..|++++|.+.+-
T Consensus 943 v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~v--hlk~a~~ledegk~edaskhyv 1019 (1636)
T KOG3616|consen 943 VAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEV--HLKLAMFLEDEGKFEDASKHYV 1019 (1636)
T ss_pred HHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccc--hhHHhhhhhhccchhhhhHhhH
Confidence 111100001111 112223344555566666555444432 1222 2234455678899999988877
Q ss_pred Hhhh
Q 006614 572 KMQH 575 (638)
Q Consensus 572 ~m~~ 575 (638)
+.++
T Consensus 1020 eaik 1023 (1636)
T KOG3616|consen 1020 EAIK 1023 (1636)
T ss_pred HHhh
Confidence 7765
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-07 Score=88.17 Aligned_cols=148 Identities=17% Similarity=0.180 Sum_probs=66.8
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--c--C
Q 006614 451 GYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR--A--G 526 (638)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~--g 526 (638)
.+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.. .| .+...+..+++. . .
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 344445555554444321 233444445555555555555555555555432 22 222223333221 1 2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHH
Q 006614 527 MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMF-EEAARLM 605 (638)
Q Consensus 527 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~ 605 (638)
.+.+|..+|+++.+. ..++..+.+.+..+....|++++|.+++.+....+. -++.+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 355555555555443 334555555555555555555555555555543321 1344444555555555554 4444555
Q ss_pred HHHH
Q 006614 606 KDMN 609 (638)
Q Consensus 606 ~~m~ 609 (638)
.++.
T Consensus 260 ~qL~ 263 (290)
T PF04733_consen 260 SQLK 263 (290)
T ss_dssp HHCH
T ss_pred HHHH
Confidence 5554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-07 Score=88.37 Aligned_cols=250 Identities=13% Similarity=0.073 Sum_probs=125.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 006614 135 LDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKI 214 (638)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 214 (638)
+.-.|++..++.-.+ ...............+.+++...|+++.++ .++.+.. .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566665554444 111111112334445556666666655433 3333322 44555554444443333444555
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006614 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 294 (638)
+.-+++.........+..........+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555444333221122222233334455667777777766432 3556666667777777777777777777776
Q ss_pred CCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 006614 295 KGCALTVYTYTELIKG----LGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN 370 (638)
Q Consensus 295 ~~~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 370 (638)
.+ .|. +...+..+ ....+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+.. +
T Consensus 160 ~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~ 234 (290)
T PF04733_consen 160 ID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-D 234 (290)
T ss_dssp CS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-H
T ss_pred cC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-C
Confidence 53 232 22223332 22334577777777776554 4456777777777777777777777777776543322 3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006614 371 VVTYNTVIKSLFESKAPASEASAWFEKMKA 400 (638)
Q Consensus 371 ~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~ 400 (638)
..+...++-.....|+..+.+.+++.++..
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 334444444445555554444555555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.00011 Score=67.43 Aligned_cols=316 Identities=13% Similarity=0.117 Sum_probs=170.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH-HHHH
Q 006614 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKI-YTTL 272 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~l 272 (638)
++.-..-+...+...|++.+|+..|...++-++ .+-.++..-...|...|+...|+.=++...+. +||-.. -..-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp--~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDP--NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 344444556666667777777777777766332 22233333445566667777777777666663 455322 1223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--H------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006614 273 VSIYFKLGEVEKALGLVQEMKGKGCALT--V------------YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVL 338 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~--~------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 338 (638)
...+.+.|.++.|..-|+..++..+.-. . ......+..+...|+...|+.....+++..+- |...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHH
Confidence 3456677777777777777776543211 0 11112234455566666777666666665332 5555
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006614 339 INNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFC 418 (638)
Q Consensus 339 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~ 418 (638)
+..-..+|...|++..|..=++...+.... +..++.-+-..++..|+.......+ ++-.+ +.||.... |.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~i-RECLK--ldpdHK~C------f~ 261 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEI-RECLK--LDPDHKLC------FP 261 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHH-HHHHc--cCcchhhH------HH
Confidence 666666666777766666555554433211 2222323333334444433331111 11111 12222111 11
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHHccCCHHH
Q 006614 419 KTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSA---RVYAVMIKHFGKCGRLSD 495 (638)
Q Consensus 419 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~ 495 (638)
.-..+.+..+.++.|. .....+++.++.+-.+...+....... ..+..+-.++...|++.+
T Consensus 262 ~YKklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 1111122222222221 223455666677777776665433222 233445566777788889
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006614 496 AVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEEDG 542 (638)
Q Consensus 496 A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 542 (638)
|++.-.+..+. .|| +.++.--..+|.-..+++.|+.-|+.+.+..
T Consensus 326 AiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 326 AIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 99888888774 354 7777777888888888999999998888753
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-06 Score=85.54 Aligned_cols=218 Identities=15% Similarity=0.075 Sum_probs=120.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006614 274 SIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLE 353 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 353 (638)
.-+.+.|++.+|.-.|+..++.++. +...|..|.......++-..|+..+.+.++..+. |..+...|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 3456788888888888888877655 7778888888888888888888888888877554 6777888888888888888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHH-----------HHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006614 354 DALKLFNKMEALQCKPNVVTYNTVIKS-----------LFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNR 422 (638)
Q Consensus 354 ~A~~~~~~~~~~~~~p~~~~~~~ll~~-----------~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 422 (638)
.|++.++.......+ |..+..+ +............+++.....+..+|+.....|.-.|.-.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 888888877553311 0000000 000000011112222233333333444444444444555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 423 VEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSS-ARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 423 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
+++|...|+..+... |.|...|+.|...++...+.++|+..|.++++. .|+ +++.--|.-.|...|.+++|...|-
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 555555555555443 444445555555555555555555555555442 121 2222233333444444444444443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.5e-06 Score=78.73 Aligned_cols=215 Identities=9% Similarity=0.034 Sum_probs=138.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK-MVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
++..+-.++...++.++|+.+..+++... +-+..+|+....++...| ++++++..++++.+...+ +..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 33344444555667777777777777642 334445655555566666 567888888887776544 556677666556
Q ss_pred HhcCCH--hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---C
Q 006614 206 MQEGYY--EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL---G 280 (638)
Q Consensus 206 ~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g 280 (638)
.+.|+. ++++++++++.+..+ .+..+|+...-.+...|+++++++.++++++.+. -|..+|+.....+.+. |
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp--kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA--KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccc
Confidence 566653 667788878877665 5777777777777777888888888888887653 3666676666555444 2
Q ss_pred C----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006614 281 E----VEKALGLVQEMKGKGCALTVYTYTELIKGLGRA----GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGR 348 (638)
Q Consensus 281 ~----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 348 (638)
. .++.++...+++...+. |...|+-+...+... +...+|.+.+.+..+.++. +......|++.|+.
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 2 24566666666666544 666676666666552 3445677777776665433 66677777777775
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-06 Score=76.09 Aligned_cols=178 Identities=15% Similarity=0.092 Sum_probs=133.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006614 143 VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
.+..+...... .+-|..+ ....+.+...|+-+.+..+..+..... .-+....+..+....+.|++.+|+..|.+..
T Consensus 52 a~~al~~~~~~--~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 52 AAAALGAAVLR--NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred HHHHHHHHHhc--CcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 44444444443 2334455 666777777888888887777765543 2366667778888888999999999999988
Q ss_pred hCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 223 NEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY 302 (638)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 302 (638)
...+ +|...|+.+.-+|.+.|++++|..-|.+..+.- .-+....|.+.-.+.-.|+.+.|..++......+.. |..
T Consensus 128 ~l~p--~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~ 203 (257)
T COG5010 128 RLAP--TDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSR 203 (257)
T ss_pred ccCC--CChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chH
Confidence 8765 888899999999999999999998888888752 336677788888888888999998888888776544 666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 303 TYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
.-..+.......|++++|..+-..-.
T Consensus 204 v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 204 VRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHHhhcCChHHHHhhccccc
Confidence 66777778888888888888765544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.00036 Score=71.39 Aligned_cols=209 Identities=13% Similarity=0.164 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI 275 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 275 (638)
..|.-...-+-..|+.+.|+.+|..... |.++++..|-.|+.++|-++-++- -|......|.+.
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~ 976 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARM 976 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHH
Confidence 3344344444456666666666665533 445555556666666666554432 144455555566
Q ss_pred HHhcCCHHHHHHHHHHHHh----------CCCCCCHHHH-------------------------HHHHHHHHhcCCHHHH
Q 006614 276 YFKLGEVEKALGLVQEMKG----------KGCALTVYTY-------------------------TELIKGLGRAGRVEDA 320 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~----------~~~~~~~~~~-------------------------~~li~~~~~~g~~~~A 320 (638)
|-..|++.+|..+|.+... .+.. ...+ ...+..|-+.|.+.+|
T Consensus 977 YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~--d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kA 1054 (1416)
T KOG3617|consen 977 YENDGDVVKAVKFFTRAQAFSNAIRLCKENDMK--DRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKA 1054 (1416)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHH
Confidence 6666666666555544321 1110 0011 1122334455555555
Q ss_pred HHHHHH--------HHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHH
Q 006614 321 YGLFMN--------MLKE--GCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASE 390 (638)
Q Consensus 321 ~~~~~~--------~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 390 (638)
+++--+ ++.. ....|....+.-.+.++...++++|..++-...+ |...+.. |..++..-.
T Consensus 1055 LelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alql-C~~~nv~vt 1124 (1416)
T KOG3617|consen 1055 LELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQL-CKNRNVRVT 1124 (1416)
T ss_pred HHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHH-HhcCCCchh
Confidence 543211 1111 2223556666667777777777877777765544 2222322 333332211
Q ss_pred HHHHHHHHHh-CCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006614 391 ASAWFEKMKA-NGVLPSP----FTYSILIDGFCKTNRVEKAHLLLEEM 433 (638)
Q Consensus 391 ~~~~~~~m~~-~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~ 433 (638)
+++-+.|.- ..-.|+. .....+...|.+.|.+..|-+-|.+.
T Consensus 1125 -ee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1125 -EEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred -HHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 333333332 1123443 34556677888889888887776554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2e-05 Score=79.07 Aligned_cols=136 Identities=16% Similarity=0.235 Sum_probs=69.8
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 344 NVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRV 423 (638)
Q Consensus 344 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 423 (638)
.+......+.+|+.+++.+.+... -..-|..+..-|...|+..-+ +++|.+. ..++-.|..|.+.|+|
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~a-e~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIA-EELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHH-HHHHHhc---------chhHHHHHHHhccccH
Confidence 344455666666666666655331 122233333334444443333 4443221 1244456667777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 424 EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNE 502 (638)
Q Consensus 424 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (638)
+.|.++-.+.. |.......|.+-..-+-+.|++.+|.++|-.+.. |+ ..|.+|-+.|..++.+++.++
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHH
Confidence 77776665543 2233445555555556666666666666544322 22 234556666666666655554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00044 Score=67.55 Aligned_cols=414 Identities=12% Similarity=0.101 Sum_probs=224.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006614 192 KPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTT 271 (638)
Q Consensus 192 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 271 (638)
+-|..+|+.||+-+-.. .++++.+.|+++...-+ -....|..-+..-.+..+++....+|.+-...- .+...|..
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP--~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFP--SSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHH
Confidence 45888999888866555 88999999999988664 466778888888888899999999998877653 45666766
Q ss_pred HHHHHHh-cCCHHH----HHHHHHHHHh-CCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHcCCCCC
Q 006614 272 LVSIYFK-LGEVEK----ALGLVQEMKG-KGCAL-TVYTYTELIKG---------LGRAGRVEDAYGLFMNMLKEGCKPD 335 (638)
Q Consensus 272 li~~~~~-~g~~~~----A~~~~~~m~~-~~~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~~~~~p~ 335 (638)
.++--.+ .|+... ..+.|+-..+ .|..+ +...|+..+.- +..+.+++...++|.+++..-.. +
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~-n 170 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH-N 170 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc-c
Confidence 6654433 233222 2233333332 23322 22234444332 23334555666777777654222 2
Q ss_pred H-HHHHHHHH------HH-------HccCCHHHHHHHHHHHHH--CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006614 336 I-VLINNLIN------VL-------GRAGRLEDALKLFNKMEA--LQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMK 399 (638)
Q Consensus 336 ~-~~~~~li~------~~-------~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~ 399 (638)
. ..|+.... .. -+..++-.|.++++++.. .|...+..+. -.........++
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~v--------p~~~T~~e~~qv----- 237 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAV--------PPKGTKDEIQQV----- 237 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCC--------CCCCChHHHHHH-----
Confidence 2 12221110 00 011223334444443321 1221111110 000000000000
Q ss_pred hCCCCCCHHHHHHHHHHHHhc------CCH--HHHHHHHHHH-HhCCCCCCHHH-HH----HHHHHHHccCC-------H
Q 006614 400 ANGVLPSPFTYSILIDGFCKT------NRV--EKAHLLLEEM-EEKGFPPCPAA-YC----SLINGYGKAKR-------Y 458 (638)
Q Consensus 400 ~~~~~~~~~~~~~li~~~~~~------g~~--~~A~~~~~~~-~~~~~~~~~~~-~~----~li~~~~~~g~-------~ 458 (638)
..|..+|.-=-.+ |.. ....-.+++. .-.+..|+... +. ..-+.+...|+ .
T Consensus 238 --------~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t 309 (656)
T KOG1914|consen 238 --------ELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLT 309 (656)
T ss_pred --------HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhH
Confidence 0011111100000 000 0011111111 11111221110 00 01112222333 4
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 006614 459 EAANELFLELKEYCGCSSARVYAVMIKHFGKCG---RLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLL 535 (638)
Q Consensus 459 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (638)
+++..+++.....-..-+..+|..+.+.--..- ..+.....++++...-...-..+|..++....+..-.+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 566666666655433334444444443222222 35666677777765432223456777888888888899999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006614 536 RRMEEDGCVP-DINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFE 614 (638)
Q Consensus 536 ~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 614 (638)
.++.+.+..+ ++..+++++.-+|. ++.+.|.++|+--..+ ..-++..-...++-+.+.++-+.|..+|++....++.
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 9999988777 67788888887765 6888999999986653 2223444557888889999999999999999988777
Q ss_pred CCH--HhHHHHHHHHhccCCcc
Q 006614 615 YDQ--ITYSSILEAVGKVDEDR 634 (638)
Q Consensus 615 p~~--~~~~~l~~~~~~~g~~~ 634 (638)
||. .+|..+++-=...|++.
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHH
Confidence 665 48999988777777654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.5e-08 Score=59.28 Aligned_cols=32 Identities=38% Similarity=0.672 Sum_probs=18.3
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 577 EIKPDAVSYNTILGCLSRAGMFEEAARLMKDM 608 (638)
Q Consensus 577 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 608 (638)
|+.||..||+++|++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.1e-05 Score=74.09 Aligned_cols=211 Identities=13% Similarity=0.076 Sum_probs=157.4
Q ss_pred HHHHhccccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 006614 95 VHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETR-MIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKA 173 (638)
Q Consensus 95 ~~~vl~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 173 (638)
+..++......+.|+.....+.... +.+..+|+..-.++...| .+++++..++.+++.+ +-+..+|+.....+.+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 4455555666778888888776544 446678888888888888 6799999999988753 44556677665556666
Q ss_pred CCH--HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc---CCh-
Q 006614 174 KMV--NKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL---GRD- 247 (638)
Q Consensus 174 g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~- 247 (638)
|+. ++++.+++++.+...+ |..+|+...-++...|+++++++.++++++.++ .|...|+.....+.+. |+.
T Consensus 120 ~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~--~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV--RNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC--CchhHHHHHHHHHHhcccccccc
Confidence 653 6789999899887654 889999999999999999999999999999876 6777777766665554 333
Q ss_pred ---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006614 248 ---ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL----GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR 313 (638)
Q Consensus 248 ---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 313 (638)
+++++...+++... +-|...|+.+...+... ++..+|.+.+.+..+.++. +......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 46777777777753 44788899888888773 3456788888887775543 67778888888875
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.2e-08 Score=58.28 Aligned_cols=32 Identities=38% Similarity=0.820 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 006614 542 GCVPDINSHNIILNGLAKSGGPKRAMEIFTKM 573 (638)
Q Consensus 542 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 573 (638)
|+.||..||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.001 Score=69.17 Aligned_cols=222 Identities=11% Similarity=0.115 Sum_probs=139.3
Q ss_pred cchHHHHHHHHHhhhCCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 006614 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIR--CLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKAL 180 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 180 (638)
++...|++-.....++. +.. .|...+. .+.+.|..++|..+++..-..+ ..|..+...+-.+|.+.|+.++|.
T Consensus 23 ~qfkkal~~~~kllkk~--Pn~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH--PNA--LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHHHHHHHHHHHHHHHC--CCc--HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHH
Confidence 44566777666666554 222 2333333 3578899999998887765543 348888999999999999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC-C---------hHHH
Q 006614 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG-R---------DISA 250 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~A 250 (638)
.+|++.... .|+..-...+..+|.+.+.+.+-.+.--++-+.-+ .+...+=++++.....- . ..-|
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p--k~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP--KRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--cccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 999998876 56677777788888888887664444444444332 33444444444444321 1 1235
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 251 IRLFDEMKENG-LQPTAKIYTTLVSIYFKLGEVEKALGLV-QEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 251 ~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
.+.++.+.+.+ ---+..-.-.-...+...|.+++|++++ ....+.-..-+...-+.-++.+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55666666543 1112222223334455678899999888 444443333344444556677788888888888888888
Q ss_pred HcCCC
Q 006614 329 KEGCK 333 (638)
Q Consensus 329 ~~~~~ 333 (638)
..|..
T Consensus 254 ~k~~D 258 (932)
T KOG2053|consen 254 EKGND 258 (932)
T ss_pred HhCCc
Confidence 87644
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.8e-06 Score=79.39 Aligned_cols=248 Identities=12% Similarity=0.082 Sum_probs=182.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 006614 134 CLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEK 213 (638)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 213 (638)
-+.++|+..+|.-.|+..++.+ |-+...|-.|.......++-..|+..+.+..+..+. |......|...|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 4567888999988898888764 557788888888889988888999999998887544 77888888899999999999
Q ss_pred HHHHHHHHHhCCCCC-------CCHHHHHHHHHHHHccCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006614 214 IHELYNEMCNEGNCF-------PDTVTYSALISAFGKLGRDISAIRLFDEMK-ENGLQPTAKIYTTLVSIYFKLGEVEKA 285 (638)
Q Consensus 214 A~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~li~~~~~~g~~~~A 285 (638)
|+..++..+...+.. ++...-.. +.+.....+....++|-++. ..+..+|..++..|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999998886654310 00000000 12222333344555555544 455557888888898899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 286 LGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPD-IVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 286 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
.+.|+..+...+. |...||-|...+....+..+|+..|.+.++. +|+ +.+...|.-.|...|.+++|.+.|=....
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999988765 7889999999999999999999999999885 343 33455577788899999999888776643
Q ss_pred C---------CCCCChhhHHHHHHHHHhcCChH
Q 006614 365 L---------QCKPNVVTYNTVIKSLFESKAPA 388 (638)
Q Consensus 365 ~---------~~~p~~~~~~~ll~~~~~~~~~~ 388 (638)
. ...++...|.+|-.++...++.+
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 2 12234567777776666666655
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.4e-06 Score=76.11 Aligned_cols=188 Identities=10% Similarity=-0.031 Sum_probs=132.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCH--H
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP---SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTA--N 196 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~ 196 (638)
......+..+...+...|++++|...++++.... +.++ .++..+..++.+.|++++|...|+++.+..+.... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456788889999999999999999999988743 2222 46788889999999999999999999876432111 2
Q ss_pred HHHHHHHHHHhc--------CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH
Q 006614 197 TYNSMILMLMQE--------GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKI 268 (638)
Q Consensus 197 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 268 (638)
++..+..++.+. |++++|.+.|+++.+..+. +...+..+..... ... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~a~~~~~~----~~~------~~--------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN--SEYAPDAKKRMDY----LRN------RL--------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC--ChhHHHHHHHHHH----HHH------HH--------HHH
Confidence 455566666654 7889999999999887642 2222222211100 000 00 011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 269 YTTLVSIYFKLGEVEKALGLVQEMKGKGCA--LTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
...+...|.+.|++++|...++...+..+. .....+..+...+.+.|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 225667788999999999999998876431 23567888899999999999999988888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2e-05 Score=79.43 Aligned_cols=189 Identities=16% Similarity=0.127 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006614 409 TYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFG 488 (638)
Q Consensus 409 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 488 (638)
.|..++.+|+..|+..+|..+..+..++ +|++..|..+.+......-+++|.++.+..... .-..+.....
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~ 496 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLIL 496 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccc
Confidence 3555677777777777777777777663 677777777777777666677777777665432 1112222233
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 006614 489 KCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAM 567 (638)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 567 (638)
+.++++++.+.|+.-.+.. +--..+|-.+..+..+.++++.|.+.|...... .|| ...||.+-.+|.+.|+-.+|.
T Consensus 497 ~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred cchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHH
Confidence 4677777777777665543 334566777777777778888888877777764 343 667888888888888888888
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 568 EIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 568 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
..+.+..+.+ .-+...|...+....+.|.+++|.+.+.++.+
T Consensus 574 ~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 574 RKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8888777655 33455666666667777888888887777664
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.0011 Score=68.83 Aligned_cols=223 Identities=12% Similarity=0.116 Sum_probs=159.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 006614 136 DETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNI--LGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEK 213 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 213 (638)
...+++..|......+++. .|+. .|..++.+ +.+.|+.++|..+++.....+.. |..|...+-..|-+.|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3567888888888888774 3443 23334444 46899999999999888777655 88899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HH
Q 006614 214 IHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE----------VE 283 (638)
Q Consensus 214 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~ 283 (638)
|..+|+...... |+......+..+|++.+++.+-.+.=-+|.+. ++-+...+=++++.+...-. ..
T Consensus 96 ~~~~Ye~~~~~~---P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 96 AVHLYERANQKY---PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999876 77888889999999999887655555455442 33455555556666554221 34
Q ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 284 KALGLVQEMKGKG-CALTVYTYTELIKGLGRAGRVEDAYGLF-MNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 284 ~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 361 (638)
-|.+.++.+.+.+ .--+..-.......+...|++++|..++ ....+.-...+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 5677777777664 2223333344455677889999999999 4444443444555556677788888999998888888
Q ss_pred HHHCC
Q 006614 362 MEALQ 366 (638)
Q Consensus 362 ~~~~~ 366 (638)
+...+
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 88766
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.4e-05 Score=84.10 Aligned_cols=203 Identities=11% Similarity=0.100 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTC----VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYN 199 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 199 (638)
++..|...+.-....++.+.|+++.+++++.-- ..-..+|.++++.-..-|.-+...++|+++.+. +. .-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-cd-~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-CD-AYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-cc-hHHHHH
Confidence 455555555555555666666666655554310 011234555555544445555555555555443 11 122344
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 006614 200 SMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT---AKIYTTLVSIY 276 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~ 276 (638)
.|...|.+.+++++|-++++.|.+.-. .....|..++..+.+..+-+.|..++.+..+. -|. .......+..-
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence 555555555555555555555555432 34445555555555555555555555554442 121 22233334444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006614 277 FKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK 333 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 333 (638)
.+.|+.+.+..+|+.....-+. -...|+..|+.-.+.|+.+.+..+|++.+..+..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 4555555555555554443222 3344555555555555555555555555554443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.3e-05 Score=67.07 Aligned_cols=247 Identities=15% Similarity=0.107 Sum_probs=138.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 006614 137 ETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHE 216 (638)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 216 (638)
-.|+|..++......... +.++..-.-+.++|...|.+..... +++... .|.......+...+...++-+.-+.
T Consensus 20 Y~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHH
Confidence 345555555444433321 1334444445556666655443322 222221 3334444444444444444444333
Q ss_pred -HHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006614 217 -LYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 217 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
+.+.+...... .+......-...|+..|++++|++...... +......=...+.+..+.+-|.+.++.|.+.
T Consensus 94 ~l~E~~a~~~~~-sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 94 SLYELVADSTDG-SNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHhhccc-hhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33333332221 333333344456677778888877766511 3333333344556777778888888888765
Q ss_pred CCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCh
Q 006614 296 GCALTVYTYTELIKGLG----RAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNV 371 (638)
Q Consensus 296 ~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 371 (638)
. +..|.+.|..++. ..+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..+++.......+ +.
T Consensus 167 d---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dp 241 (299)
T KOG3081|consen 167 D---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DP 241 (299)
T ss_pred c---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CH
Confidence 2 5556665554443 355678888888888765 5667778888888888888888888888888775543 45
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 006614 372 VTYNTVIKSLFESKAPASEASAWFEKMKAN 401 (638)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~ 401 (638)
.+...++-.....|...++..+.+.++...
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 555555555556666666656666666654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.8e-06 Score=76.37 Aligned_cols=190 Identities=13% Similarity=0.052 Sum_probs=131.7
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH-HH
Q 006614 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK-P-TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT-VT 233 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~ 233 (638)
...+..+...+..+.+.|++++|...|+++....+. | ...++..+..++.+.|++++|+..|+++.+..+..+.. .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345667788888899999999999999998776322 1 12467788889999999999999999998876532332 23
Q ss_pred HHHHHHHHHcc--------CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006614 234 YSALISAFGKL--------GRDISAIRLFDEMKENGLQPTA-KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTY 304 (638)
Q Consensus 234 ~~~l~~~~~~~--------g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 304 (638)
+..+...+... |+.++|.+.++.+.+.. |+. ..+..+..... ... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHH
Confidence 44455555543 67888888888887752 332 22222211100 000 00 0112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006614 305 TELIKGLGRAGRVEDAYGLFMNMLKEGCK-P-DIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 305 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
..+...+.+.|++++|...++...+..+. | ....+..+..++.+.|++++|...++.+....
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 24567789999999999999999987432 2 45788899999999999999999999887643
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.3e-05 Score=83.57 Aligned_cols=239 Identities=12% Similarity=0.094 Sum_probs=161.0
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006614 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
+.+...+..++..+...+++++|.++.+...+..+. ....|-.+...+.+.++.+++.-+ .+..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------- 91 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLID------------- 91 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhh-------------
Confidence 345677888888888888888888888876665222 333344444466666766555554 3322
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006614 237 LISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 316 (638)
......++.-...+...|.+.+ -+...+..+..+|-+.|+.++|..+++++.+..+. |+.+.|.+...|... +
T Consensus 92 ---~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 92 ---SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D 164 (906)
T ss_pred ---hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence 2222233322333333444432 35557788888999999999999999999988754 888888888888888 8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCChHHHHHHHH
Q 006614 317 VEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVV-TYNTVIKSLFESKAPASEASAWF 395 (638)
Q Consensus 317 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~ 395 (638)
+++|..++.+.+.. +...+++..+.+++.++.... |+.. .+-.++
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~----------------- 210 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRIE----------------- 210 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHHHHHH-----------------
Confidence 99998888877654 666678888888888887743 3322 222222
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006614 396 EKMKAN-GVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYG 453 (638)
Q Consensus 396 ~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 453 (638)
+.+... |..--..++-.+...|...++++++..+++.+.+.. +.|..+..-++..|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 222221 222344567778888999999999999999999986 667777777777776
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-05 Score=84.17 Aligned_cols=150 Identities=9% Similarity=0.014 Sum_probs=128.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHH
Q 006614 119 RNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTY 198 (638)
Q Consensus 119 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 198 (638)
+.+++++..+-.|..+..+.|.+++|..+++...+. .+-+.......+..+.+.+++++|...+++.....+. +....
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~ 157 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREI 157 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHH
Confidence 356788999999999999999999999999999885 3556678888999999999999999999999988654 78888
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006614 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
+.+..++.+.|++++|.++|+++...++ .+..++..+...+-..|+.++|...|+...+.- .+....|+..+
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p--~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHP--EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 8899999999999999999999998553 458899999999999999999999999998752 34555555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.8e-05 Score=81.39 Aligned_cols=232 Identities=13% Similarity=0.034 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 006614 336 IVLINNLINVLGRAGRLEDALKLFNKMEAL-QCKP---NVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYS 411 (638)
Q Consensus 336 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p---~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 411 (638)
...|-..+......++.+.|.++.+++... +++- -...|.++++..-.-| .++...++|++..+.- -....|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG-~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG-TEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC-cHHHHHHHHHHHHHhc--chHHHHH
Confidence 334444445555555555555555554331 1100 1123333333332333 2333355555555431 1123466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHcc
Q 006614 412 ILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC-SSARVYAVMIKHFGKC 490 (638)
Q Consensus 412 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 490 (638)
.|...|.+.+.+++|.++++.|.++- ......|...++.+.+.++-+.|..++.++.+.-.. .........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 67777777777777777777777652 456677777777777777777777777777664211 1344455556666677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHH
Q 006614 491 GRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD--INSHNIILNGLAKSGGPKRAME 568 (638)
Q Consensus 491 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 568 (638)
|+.+.+..+|+...... +.-...|+.+++.-.++|+.+.+..+|++.+..++.|- -..|...+..=-..|+-+.+..
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 77777777777776542 33456777777777778888888888888877776654 3345555555455566544443
Q ss_pred HHHH
Q 006614 569 IFTK 572 (638)
Q Consensus 569 ~~~~ 572 (638)
+=.+
T Consensus 1693 VKar 1696 (1710)
T KOG1070|consen 1693 VKAR 1696 (1710)
T ss_pred HHHH
Confidence 3333
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.9e-05 Score=67.89 Aligned_cols=173 Identities=13% Similarity=0.118 Sum_probs=103.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 006614 392 SAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY 471 (638)
Q Consensus 392 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (638)
..+.+.+.......+......-...|+..|++++|++...... +......-+..+.+..+++-|.+.+++|...
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3344444444333333333333455777777887777765521 2333334445566667777777777777764
Q ss_pred CCCCcHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006614 472 CGCSSARVYAVMIKHFGK----CGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDI 547 (638)
Q Consensus 472 ~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 547 (638)
.+..+.+.|..++.+ .+.+.+|.-+|++|.++ .+|+..+.+....++...|++++|..++++.+.+... ++
T Consensus 167 ---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dp 241 (299)
T KOG3081|consen 167 ---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DP 241 (299)
T ss_pred ---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CH
Confidence 345566666666554 24577777777777664 3577777777777777777777777777777776432 56
Q ss_pred HHHHHHHHHHHhcCChH-HHHHHHHHhhh
Q 006614 548 NSHNIILNGLAKSGGPK-RAMEIFTKMQH 575 (638)
Q Consensus 548 ~~~~~l~~~~~~~g~~~-~A~~~~~~m~~ 575 (638)
.+...++..-...|+.. --.+.+.+++.
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 66655555555555543 33445555553
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.5e-05 Score=81.47 Aligned_cols=238 Identities=10% Similarity=0.047 Sum_probs=167.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
++.....+=.+++.-|..++|-+-+..-.+ .++...++-....+++.-....... ...++..+..|..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La~ 94 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQAR-----------QVLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVAR 94 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHH-----------HHHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHHH
Confidence 445555555667777777776543332222 2333333333334444333333333 4557999999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
+..+.|.+++|..+++...+..+ .+......+...+.+.+++++|+...++..... +-+....+.+..++.+.|+++
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~~P--d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQRFP--DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchH
Confidence 99999999999999999999765 567778888999999999999999999999874 346777888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 363 (638)
+|..+|+++...+.. +..++..+...+-..|+.++|...|+...+.. .|....|+..+ +++..-..+++.+.
T Consensus 172 ~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~ 243 (694)
T PRK15179 172 QADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHcC
Confidence 999999999985433 58899999999999999999999999998752 23444555443 34444555666653
Q ss_pred HC----CCCCChhhHHHHHHHHHhc
Q 006614 364 AL----QCKPNVVTYNTVIKSLFES 384 (638)
Q Consensus 364 ~~----~~~p~~~~~~~ll~~~~~~ 384 (638)
.. |..........+|..+-+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 244 VEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred cccccCCCceeeeeHHHHHHHHhhc
Confidence 33 2333444555555554443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.1e-05 Score=67.66 Aligned_cols=95 Identities=14% Similarity=-0.037 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006614 198 YNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYF 277 (638)
Q Consensus 198 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 277 (638)
+..+...+...|++++|...|+.+....+ .+...|..+...+.+.|++++|...|+...+.. +.+...+..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP--WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 33344455555555555555555555443 344555555555555555555555555555432 224445555555555
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 006614 278 KLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 278 ~~g~~~~A~~~~~~m~~~ 295 (638)
..|++++|...|+...+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=3e-05 Score=69.00 Aligned_cols=120 Identities=12% Similarity=0.105 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HccCC--hHH
Q 006614 173 AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF-GKLGR--DIS 249 (638)
Q Consensus 173 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~ 249 (638)
.++.+++...+++..+..+ .+...|..+...|...|++++|...|++..+..+ .+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P--~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG--ENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCCCcHH
Confidence 4455555555555555432 2566666666666666666666666666666554 4555555555543 44454 366
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006614 250 AIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG 296 (638)
Q Consensus 250 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 296 (638)
|.+++++..+.. +-+..++..+...+.+.|++++|+..++++.+..
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666666666543 2245556666666666666666666666665543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.1e-06 Score=81.75 Aligned_cols=225 Identities=15% Similarity=0.082 Sum_probs=166.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHH
Q 006614 119 RNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTY 198 (638)
Q Consensus 119 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 198 (638)
.+++|--..--.+...+...|-..+|..++++. ..+..++-+|...|+-.+|..+..+..++ +|++..|
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~ly 460 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLY 460 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhH
Confidence 344444444456777888888888888888764 35667788888888888888888887774 6788888
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006614 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
..+.+.....--+++|.++++..... .-..+.....+.+++.++.+.|+.-.+.. +....+|-.+..+..+
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQ 531 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHH
Confidence 88888877777788888887765432 22223333344688888888888776653 3467788888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006614 279 LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKL 358 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 358 (638)
.++++.|.+.|.......+. +...||.+-.+|.+.++-.+|...+.+..+-+.. +...|...+....+.|.+++|.+.
T Consensus 532 lek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHH
Confidence 88888888888888776443 6778888888888888888888888888887633 555666677777888888888888
Q ss_pred HHHHHHC
Q 006614 359 FNKMEAL 365 (638)
Q Consensus 359 ~~~~~~~ 365 (638)
+.++.+.
T Consensus 610 ~~rll~~ 616 (777)
T KOG1128|consen 610 YHRLLDL 616 (777)
T ss_pred HHHHHHh
Confidence 8887654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.1e-05 Score=68.13 Aligned_cols=120 Identities=11% Similarity=0.127 Sum_probs=82.4
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI-YFKLGE--VEK 284 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~--~~~ 284 (638)
.++.+++...++...+.++ .|...|..+...|...|++++|...+++..+.. +.+...+..+..+ +...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P--~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP--QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 5566777777777777665 667777777777777777777777777777653 2356666666665 355565 477
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006614 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
|.+++++..+.++. +...+..+...+.+.|++++|...|+++.+..
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777777776654 66666777777777777777777777776653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.8e-05 Score=67.44 Aligned_cols=164 Identities=15% Similarity=0.057 Sum_probs=133.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006614 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
|... ..+-..+.-.|+-+....+........+ .|.......+....+.|++.+|...|.+..... ++|...|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~--~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYP--KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCc--ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 3444 5566777778888888888777666443 566777778999999999999999999988753 67899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006614 274 SIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLE 353 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 353 (638)
-+|.+.|+.+.|..-|.+..+..+. +...++.+.-.+.-.|+.+.|..++......+.. |..+-..+.......|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChH
Confidence 9999999999999999998887554 6677888888888999999999999998877544 7777778888889999999
Q ss_pred HHHHHHHHHH
Q 006614 354 DALKLFNKME 363 (638)
Q Consensus 354 ~A~~~~~~~~ 363 (638)
+|.++...-.
T Consensus 220 ~A~~i~~~e~ 229 (257)
T COG5010 220 EAEDIAVQEL 229 (257)
T ss_pred HHHhhccccc
Confidence 9988876543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00021 Score=76.54 Aligned_cols=238 Identities=12% Similarity=0.104 Sum_probs=143.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006614 300 TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIK 379 (638)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 379 (638)
+...+..|+..+...+++++|.++.+...+..+. ....|-.+...+.+.++.+++..+ .+.. ..+...-|
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--~~~~~~~~----- 99 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLID--SFSQNLKW----- 99 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhh--hcccccch-----
Confidence 4556677777777777888887777766654322 223333333466666666665555 2222 11111111
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 006614 380 SLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYE 459 (638)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 459 (638)
..+..+...|... .-+...+..+..+|-+.|+.++|..+++++.+.. +.|+.+.+.+...|... +++
T Consensus 100 ---------~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 100 ---------AIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred ---------hHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 2223333344443 2244577788999999999999999999999988 88899999999999999 999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 006614 460 AANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRME 539 (638)
Q Consensus 460 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (638)
+|.+++.++... |...+++.++.+++.++.... |+...+ -..+.+.+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~---------------f~~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDF---------------FLRIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchH---------------HHHHHHHHH
Confidence 999988887763 556667888888888877653 332111 111222222
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 006614 540 ED-GCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLS 593 (638)
Q Consensus 540 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 593 (638)
.. |..--..++-.+...|....+++++..+++.+.+..-+ |.....-++.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11 11122334444555556666666777777666654221 4445555555554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.8e-05 Score=66.54 Aligned_cols=96 Identities=7% Similarity=-0.119 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 006614 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
+.....++...|++++|...|+..+... +.+...+..+..++.+.|++++|...|++..+..+ .+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 3344555666666666666666665542 44556666666666666666666666666665532 255666666666666
Q ss_pred cCCHhHHHHHHHHHHhCC
Q 006614 208 EGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~ 225 (638)
.|++++|+..|+...+..
T Consensus 105 ~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 666666666666666654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00018 Score=69.61 Aligned_cols=110 Identities=16% Similarity=0.221 Sum_probs=54.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHH
Q 006614 454 KAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAY 532 (638)
Q Consensus 454 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 532 (638)
..|++++|+..++.+.+. .+.|+..+....+.+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|++.+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 344445555555544443 3344444444445555555555555555555543 233 333344445555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006614 533 SLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAM 567 (638)
Q Consensus 533 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 567 (638)
.+++...... +-|+..|..|..+|...|+..+|.
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHH
Confidence 5555555442 234555555555555555554443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00057 Score=60.27 Aligned_cols=165 Identities=18% Similarity=0.232 Sum_probs=114.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
+|..++-+....|+.+.|...++++... ++.+...-..-...+-..|++++|.++|+.+++.++ .|.+++-.-+...
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp--t~~v~~KRKlAil 130 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDP--TDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCc--chhHHHHHHHHHH
Confidence 3445556666778888888888887665 222222222222334457888899999998888775 6777787777777
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHH
Q 006614 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG---RVE 318 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~ 318 (638)
-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-..+. +...+..+.+.+.-.| +.+
T Consensus 131 ka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHH
Confidence 7778877888887777765 5568888888888888888888888888888876443 5555555555544333 455
Q ss_pred HHHHHHHHHHHcC
Q 006614 319 DAYGLFMNMLKEG 331 (638)
Q Consensus 319 ~A~~~~~~~~~~~ 331 (638)
.|.++|.+.++..
T Consensus 209 ~arkyy~~alkl~ 221 (289)
T KOG3060|consen 209 LARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHhC
Confidence 6777777777653
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00046 Score=66.87 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT-ANTYNSMILM 204 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 204 (638)
..+.-........|++++|.+.++.+++. .+-|+.........+.+.++..+|.+.++++... .|+ ......+..+
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~a 383 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHH
Confidence 34445555566677777777777776664 3455666666667777777777777777777766 333 5556667777
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
|.+.|++.+|+..++......+ .|...|..|..+|...|+..++.....+. |...|+++.
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p--~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~ 443 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDP--EDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQ 443 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHH
Confidence 7777777777777777777665 56777777777777777777666655443 345677777
Q ss_pred HHHHHHHHHhC
Q 006614 285 ALGLVQEMKGK 295 (638)
Q Consensus 285 A~~~~~~m~~~ 295 (638)
|...+....+.
T Consensus 444 A~~~l~~A~~~ 454 (484)
T COG4783 444 AIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHh
Confidence 77777666654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0012 Score=58.35 Aligned_cols=180 Identities=13% Similarity=0.051 Sum_probs=98.1
Q ss_pred HHHHHHHHh---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 392 SAWFEKMKA---NG-VLPSPF-TYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFL 466 (638)
Q Consensus 392 ~~~~~~m~~---~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 466 (638)
.+++..+.. .| ..++.. .|..++-+....|+.+.|..+++++...- |.+...-..-...+-..|++++|.++++
T Consensus 32 v~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~ 110 (289)
T KOG3060|consen 32 VQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYE 110 (289)
T ss_pred HHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHH
Confidence 555555443 22 333432 23444455556666666766666666552 3333333333334445566666666666
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006614 467 ELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD 546 (638)
Q Consensus 467 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 546 (638)
.+.+.. +.|..++-.-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++-.. +.+
T Consensus 111 ~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n 187 (289)
T KOG3060|consen 111 SLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFN 187 (289)
T ss_pred HHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCc
Confidence 666653 445555555455555556656666666655554 34566666666666666666666666666666542 223
Q ss_pred HHHHHHHHHHHHhcC---ChHHHHHHHHHhhh
Q 006614 547 INSHNIILNGLAKSG---GPKRAMEIFTKMQH 575 (638)
Q Consensus 547 ~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~ 575 (638)
+..+..+...+.-.| +.+.|.++|.+..+
T Consensus 188 ~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 188 PLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444444555444443 34556666666654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.2e-05 Score=62.48 Aligned_cols=94 Identities=16% Similarity=0.129 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
...+...+.+.|++++|...|+.+...+. .+...+..+...+...|++++|...|++..+.++ .+...+..+...+.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~ 96 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP--DDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CChHHHHHHHHHHH
Confidence 33444444444455555554444444321 1444444444444444555555555544444332 33344444444444
Q ss_pred ccCChHHHHHHHHHHHH
Q 006614 243 KLGRDISAIRLFDEMKE 259 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~ 259 (638)
..|++++|.+.|+...+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44444444444444444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.4e-05 Score=62.42 Aligned_cols=103 Identities=11% Similarity=-0.020 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+.+......+...+.+.|++++|...++.+...+ +.++..+..+...+.+.|++++|...|++..+.+ +.+...+..+
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l 91 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHA 91 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 3455677788899999999999999999988754 5688899999999999999999999999998875 3478888889
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
...+...|++++|...|+...+..+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998763
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00017 Score=60.89 Aligned_cols=124 Identities=10% Similarity=0.078 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC--HHHHHHH
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG---PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT--ANTYNSM 201 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l 201 (638)
.|..++..+. .++...+...++.+.... +.+ ....-.+...+...|++++|...|+++......++ ......+
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3333443332 444444444444444432 111 12222233444444555555555555444431111 1122233
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFD 255 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 255 (638)
...+...|++++|+..++...... .....+......+.+.|+.++|...|+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~---~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA---FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc---hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444444455555555443321110 222333344444444444444444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.08 E-value=6e-06 Score=49.99 Aligned_cols=33 Identities=45% Similarity=0.713 Sum_probs=25.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006614 584 SYNTILGCLSRAGMFEEAARLMKDMNAKGFEYD 616 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 616 (638)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777778888888888888888777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00015 Score=70.89 Aligned_cols=126 Identities=14% Similarity=0.177 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
.....++..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|++++++..+..+ .+......-...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p--~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP--QDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Confidence 334455566666777777777777777662 33 333466666667777777777777776554 455666666666
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMK 293 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 293 (638)
+.+.++++.|+++.+++.+.. +-+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777777642 2234477777777777777777777776654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.019 Score=58.16 Aligned_cols=205 Identities=8% Similarity=0.086 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH----------HHHHcCCCHHHHHHHHHHhhhCCCC
Q 006614 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIV----------NILGKAKMVNKALSIFYQIKSRKCK 192 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~g~~~~A~~~~~~~~~~~~~ 192 (638)
|-+..|..++..-...-.++-|...|-+.-. -+.....-.+- ..-+--|.+++|.++|-.+-.+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh---
Confidence 3456676666655555555555554443322 11111111111 1112235667777776666544
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006614 193 PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTL 272 (638)
Q Consensus 193 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 272 (638)
..-|..+.+.|++-++.+++..=-.......-...++.+...+.....+++|.+.+..-... ...
T Consensus 764 ------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 764 ------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred ------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 22345556666666665554331110000011245666666666666666666666443211 124
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 006614 273 VSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRL 352 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 352 (638)
+.++.+..++++-+.+...+.+ +....-.+.+.+.+.|.-++|.+.|-+-- . | ...+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHHHHHHH
Confidence 4555555555554444443332 44555566777777777777776664321 1 1 2234556666777
Q ss_pred HHHHHHHHHH
Q 006614 353 EDALKLFNKM 362 (638)
Q Consensus 353 ~~A~~~~~~~ 362 (638)
.+|.++-+..
T Consensus 895 ~~avelaq~~ 904 (1189)
T KOG2041|consen 895 GEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhc
Confidence 7777766654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00029 Score=68.91 Aligned_cols=124 Identities=18% Similarity=0.177 Sum_probs=85.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006614 234 YSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR 313 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 313 (638)
...|+..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++++..+..+. +...+....+.+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 3455555666677777777777777653 33 3344666666677777777777777765433 56666666677778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 314 AGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 363 (638)
.++++.|+.+.+++.+..+. +..+|..|..+|.+.|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888887776333 55578888888888888888887777664
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0006 Score=57.54 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=49.9
Q ss_pred cCCHhHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFP-DTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT--AKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~ 284 (638)
.++...+.+.++.+...++..+ .....-.+...+...|++++|...|+........++ ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4455555555555554432100 011222233444445555555555555554431111 1123334445555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006614 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMN 326 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 326 (638)
|+..++...... .....+....+.+.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555554422211 1233344444555555555555555543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.3e-05 Score=48.45 Aligned_cols=33 Identities=42% Similarity=0.828 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006614 514 TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD 546 (638)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 546 (638)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.4e-05 Score=47.88 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 006614 583 VSYNTILGCLSRAGMFEEAARLMKDMNAKGFEY 615 (638)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 615 (638)
.+|+.++++|++.|+++.|.+++++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356677777777777777777777777666665
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.02 Score=54.53 Aligned_cols=288 Identities=15% Similarity=0.064 Sum_probs=175.2
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006614 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
+.+.+..++.+|+..+....+..+. ++.-|..-...+..-|++++|..-.+.-++..+ -........-..+...++.
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd--~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKD--GFSKGQLREGQCHLALSDL 133 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCC--CccccccchhhhhhhhHHH
Confidence 5666777888888888888877544 566677777777888888888887777665433 2222333333444444444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHH
Q 006614 248 ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGC-ALTVYTYTEL-IKGLGRAGRVEDAYGLFM 325 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l-i~~~~~~g~~~~A~~~~~ 325 (638)
.+|.+.++ +...| ....++..++....... +|.-.+|..+ ..++.-.|+.++|.+.--
T Consensus 134 i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 134 IEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 44444444 11111 12223333333333222 2333444443 356678899999988877
Q ss_pred HHHHcCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 006614 326 NMLKEGCKPDIVLINNLIN--VLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGV 403 (638)
Q Consensus 326 ~~~~~~~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~ 403 (638)
..++.... +. +...++ ++.-.++.+.|...|++....+ |+......+-.. .+.++.+...|
T Consensus 194 ~ilkld~~-n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~-----------~k~le~~k~~g- 256 (486)
T KOG0550|consen 194 DILKLDAT-NA--EALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMM-----------PKKLEVKKERG- 256 (486)
T ss_pred HHHhcccc-hh--HHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhh-----------HHHHHHHHhhh-
Confidence 77765322 22 233333 4455688899999999887754 554433322211 22234444443
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHH
Q 006614 404 LPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK---GFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVY 480 (638)
Q Consensus 404 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 480 (638)
+-..+.|++.+|.+.|.+.+.. +..++...|........+.|+.++|+.--+...+... .-+..|
T Consensus 257 -----------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-syikal 324 (486)
T KOG0550|consen 257 -----------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-SYIKAL 324 (486)
T ss_pred -----------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHH
Confidence 3467899999999999998865 3445666777778888889999999988888776410 112223
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006614 481 AVMIKHFGKCGRLSDAVDLFNEMKKLR 507 (638)
Q Consensus 481 ~~li~~~~~~g~~~~A~~~~~~m~~~~ 507 (638)
-.-..++...++|++|.+-|++..+..
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333445566788999999888876653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.005 Score=51.69 Aligned_cols=103 Identities=10% Similarity=0.037 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006614 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
.|+..-...+.+++.+.|+..+|...|++...--+-.|......+.++....+++..|...++++.+.++...+..+-..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444444555555555555555555555554434445555555555555555555555555555444322222223334
Q ss_pred HHHHHHccCChHHHHHHHHHHHH
Q 006614 237 LISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
+.+.+...|+..+|...|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 44445555555555555555544
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00024 Score=69.75 Aligned_cols=123 Identities=19% Similarity=0.177 Sum_probs=67.7
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 006614 473 GCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL--RCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSH 550 (638)
Q Consensus 473 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 550 (638)
.+.+......+++......+.+++..++.+.... ....-..|..+++..|.+.|..++++++++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3444555555555555555566666666555543 11111223345666666666666666666666666666666666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc
Q 006614 551 NIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRA 595 (638)
Q Consensus 551 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 595 (638)
|.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666655544444555555444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00025 Score=69.58 Aligned_cols=125 Identities=12% Similarity=0.224 Sum_probs=107.4
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 436 KGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY--CGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVY 513 (638)
Q Consensus 436 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 513 (638)
.+.+.+...+..+++.+....+++.+..++.+.... +...-..+..++++.|...|..++++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344778888889999999999999999999988875 222234455699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006614 514 TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKS 560 (638)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 560 (638)
++|.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999887777888887777777665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.8e-05 Score=46.00 Aligned_cols=32 Identities=44% Similarity=0.672 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 006614 514 TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP 545 (638)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 545 (638)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00078 Score=54.64 Aligned_cols=98 Identities=10% Similarity=0.035 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--CCHHHHHHHHH
Q 006614 128 YMALIRCLDETRMIGVMWKSIQDMVRSTC--VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMIL 203 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~ 203 (638)
+...+..+.+.|++++|.+.+..+.+... +.....+..+..++.+.|+++.|...|+.+....+. ....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444445555555555555555544211 011233444444555555555555555554433111 11333444444
Q ss_pred HHHhcCCHhHHHHHHHHHHhCC
Q 006614 204 MLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
++.+.|++++|...++++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 4445555555555555554443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.001 Score=54.00 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006614 269 YTTLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
+..+...+.+.|+.++|.+.++++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 333344444444444444444444433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.018 Score=53.13 Aligned_cols=184 Identities=11% Similarity=0.064 Sum_probs=110.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHH---HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHH
Q 006614 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTY---NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYS 235 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 235 (638)
++..+......+.+.|++++|...|+++....+.+ .... -.++.++.+.+++++|...|++..+..|..|+. .|.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHH
Confidence 44444455556667788888888888887764332 2222 345677788888888888888888877654544 233
Q ss_pred HHHHHHHc--cC---------------C---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006614 236 ALISAFGK--LG---------------R---DISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 236 ~l~~~~~~--~g---------------~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
..+.+.+. .+ + ..+|++.|+.+++. -|+ ..-..+|...+..+...
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH
Confidence 33333221 11 1 13444555555543 132 22344454444444322
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 296 GCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE--GCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 296 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 363 (638)
=...--.+.+.|.+.|.+..|..-++.+++. +.+........++.+|...|..++|.+....+.
T Consensus 174 ----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0111114456688888888888888888875 333345566777888888888888887776553
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00051 Score=52.88 Aligned_cols=89 Identities=26% Similarity=0.363 Sum_probs=36.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
+...+...|++++|...++++.+..+ .+...+..+...+...|++++|.+.++...+.. +.+..++..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP--DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 33344444444444444444444332 222333334444444444444444444444332 112233444444444444
Q ss_pred CHHHHHHHHHHH
Q 006614 281 EVEKALGLVQEM 292 (638)
Q Consensus 281 ~~~~A~~~~~~m 292 (638)
++++|...+...
T Consensus 83 ~~~~a~~~~~~~ 94 (100)
T cd00189 83 KYEEALEAYEKA 94 (100)
T ss_pred hHHHHHHHHHHH
Confidence 444444444443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00068 Score=51.80 Aligned_cols=76 Identities=14% Similarity=0.279 Sum_probs=41.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 006614 554 LNGLAKSGGPKRAMEIFTKMQHSEI-KPDAVSYNTILGCLSRAG--------MFEEAARLMKDMNAKGFEYDQITYSSIL 624 (638)
Q Consensus 554 ~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 624 (638)
|..+...|++.....+|+.+++.|+ .|+..+|+.++.+..+.. +.-+.+.+|+.|...+++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 555555555554444321 2334555666666666677777777766
Q ss_pred HHHhc
Q 006614 625 EAVGK 629 (638)
Q Consensus 625 ~~~~~ 629 (638)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 66654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00047 Score=52.68 Aligned_cols=78 Identities=22% Similarity=0.376 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHHCCCCCChhhHHH
Q 006614 306 ELIKGLGRAGRVEDAYGLFMNMLKEGC-KPDIVLINNLINVLGRAG--------RLEDALKLFNKMEALQCKPNVVTYNT 376 (638)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~~ 376 (638)
..|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.+++. ++-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555666666666666666666 666666666666655442 23344555666666666666666666
Q ss_pred HHHHHHh
Q 006614 377 VIKSLFE 383 (638)
Q Consensus 377 ll~~~~~ 383 (638)
++..+++
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 6655443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.73 E-value=4e-05 Score=44.69 Aligned_cols=30 Identities=30% Similarity=0.707 Sum_probs=20.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006614 584 SYNTILGCLSRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 613 (638)
+|+.++++|++.|++++|.+++++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 567777777777777777777777766653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00059 Score=52.52 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 006614 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
|..+...+...|++++|.+.++...+.. +.+...+..+...+...|++++|...|+........ +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 3344445555555555555555554431 222344444445555555555555555554443211 23344444455555
Q ss_pred cCCHhHHHHHHHHHHh
Q 006614 208 EGYYEKIHELYNEMCN 223 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~ 223 (638)
.|++++|...++...+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 5555555555544443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.018 Score=53.14 Aligned_cols=184 Identities=10% Similarity=0.012 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSV---LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS 200 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 200 (638)
++..+-.....+.+.|++++|.+.|+++.... +-++.. ...++.++.+.+++++|...|++..+..+......|-.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 45555566777788999999999999998853 222333 25567888999999999999999988754433344444
Q ss_pred HHHHHHh--cC---------------C---HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 201 MILMLMQ--EG---------------Y---YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 201 l~~~~~~--~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
.+.+++. .+ + ..+|++.|+++++.. |+. .-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHH
Confidence 4444431 11 1 245667777777755 333 2234444444433321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 261 GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK--GCALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 261 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
=...-..+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|......+.
T Consensus 174 ----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1111225667788888888888888888875 222344566677888888888888887766543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0019 Score=58.74 Aligned_cols=98 Identities=21% Similarity=0.191 Sum_probs=76.1
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006614 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
+-+.+.+++++|+..|.+..+..+. |.+-|..-..+|++.|+++.|++-.+..+..++ .-..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp--~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP--HYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHccCcH
Confidence 5566778888888888888887433 777777788888888888888888888888664 4567888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH
Q 006614 248 ISAIRLFDEMKENGLQPTAKIYT 270 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~~~~~~ 270 (638)
.+|++.|++..+ +.|+-.+|-
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHH
Confidence 888888888777 457666554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=7.8e-05 Score=56.01 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=8.9
Q ss_pred HHHHHHhcCCHhHHHHHHHH
Q 006614 201 MILMLMQEGYYEKIHELYNE 220 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~ 220 (638)
+..+|.+.|++++|++++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0015 Score=54.04 Aligned_cols=97 Identities=9% Similarity=-0.033 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
.....+...+...|++++|.++|+.+....+. +..-|..|...+-..|++++|++.|.......+ .|...+-.+..+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--ddp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCchHHHHHHHH
Confidence 34455556666777777777777777665433 555666677777777777777777777776664 566667777777
Q ss_pred HHccCChHHHHHHHHHHHHC
Q 006614 241 FGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~ 260 (638)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777766653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0034 Score=54.76 Aligned_cols=91 Identities=11% Similarity=0.052 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVM--GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
....|..+...+...|++++|...+++.++....+ ....+..+...+.+.|++++|...+.+..+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 44567777777888888888888888877643222 1356777777788888888888888887765322 55666666
Q ss_pred HHHHHhcCCHhHHH
Q 006614 202 ILMLMQEGYYEKIH 215 (638)
Q Consensus 202 ~~~~~~~g~~~~A~ 215 (638)
...+...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77777777654433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0027 Score=55.37 Aligned_cols=131 Identities=15% Similarity=0.098 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006614 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT--ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++.....+ .+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--KQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHH
Confidence 344677778888889999999999999886543332 46788888999999999999999999988664 45666777
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006614 237 LISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 316 (638)
+...+...|+...+..-++.... .+++|.+++++....+ ...|..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~----p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLA----PNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhC----chhHHHHHHHHHhcCc
Confidence 77777777776555444333321 2456666666666542 2224444444444443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0018 Score=63.76 Aligned_cols=91 Identities=7% Similarity=-0.087 Sum_probs=44.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHh
Q 006614 133 RCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYE 212 (638)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 212 (638)
..+...|++++|++.|.++++.. +.+...+..+..+|.+.|++++|+..++++...... +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 33444555555555555555432 333444445555555555555555555555444221 4444455555555555555
Q ss_pred HHHHHHHHHHhCC
Q 006614 213 KIHELYNEMCNEG 225 (638)
Q Consensus 213 ~A~~~~~~~~~~~ 225 (638)
+|+..|++..+..
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 5555555555443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00014 Score=54.69 Aligned_cols=80 Identities=19% Similarity=0.306 Sum_probs=45.3
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHccCCHHHHH
Q 006614 525 AGMIDDAYSLLRRMEEDGCV-PDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKP-DAVSYNTILGCLSRAGMFEEAA 602 (638)
Q Consensus 525 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 602 (638)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ .. ..| +......+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46667777777777665321 1334444466677777777777777766 21 112 2233334466677777777777
Q ss_pred HHHHH
Q 006614 603 RLMKD 607 (638)
Q Consensus 603 ~~~~~ 607 (638)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 76664
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.58 E-value=8.6e-05 Score=43.25 Aligned_cols=26 Identities=35% Similarity=0.726 Sum_probs=10.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 006614 515 YNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (638)
|++++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.002 Score=63.35 Aligned_cols=91 Identities=12% Similarity=-0.019 Sum_probs=62.9
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC
Q 006614 167 VNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR 246 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 246 (638)
...+...|++++|+..|.+..+.... +...|..+..+|.+.|++++|+..+++++...+ .+...|..+..++...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhCC
Confidence 34455667777777777777766433 566677777777777777777777777777654 456667777777777777
Q ss_pred hHHHHHHHHHHHHC
Q 006614 247 DISAIRLFDEMKEN 260 (638)
Q Consensus 247 ~~~A~~~~~~m~~~ 260 (638)
+++|+..|++..+.
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777777664
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.011 Score=56.28 Aligned_cols=130 Identities=19% Similarity=0.220 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCc--HH
Q 006614 409 TYSILIDGFCKTNRVEKAHLLLEEMEEK----GFPP-CPAAYCSLINGYGKAKRYEAANELFLELKEY---CGCSS--AR 478 (638)
Q Consensus 409 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~--~~ 478 (638)
.|......|...|++++|.+.|.+.... +-+. ....|......|.+. ++++|.+.+++.... ...++ ..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~ 115 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3555566677777888777777765321 1111 112333334444333 677776666665431 11111 22
Q ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006614 479 VYAVMIKHFGKC-GRLSDAVDLFNEMKKL----RCKPD--VYTYNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 479 ~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (638)
.+..+...|... |++++|++.|++..+. + .+. ...+..+...+.+.|++++|.++|++...
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344444555555 5566666555554322 1 111 12334444555555555555555555554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0017 Score=61.44 Aligned_cols=132 Identities=12% Similarity=0.058 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGK-AKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
.+|..+++...+.+..+.|.++|.+..+. ...+..+|...+..-.+ .++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~-~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD-KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 35666666666666666666666666532 22334445444444233 34555566666666554 33355666666666
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFP-DTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
+.+.|+.+.|..+|++....-+... ....|..++..=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666655421101 112555555555555555555555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0026 Score=60.25 Aligned_cols=131 Identities=12% Similarity=0.080 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006614 408 FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGK-AKRYEAANELFLELKEYCGCSSARVYAVMIKH 486 (638)
Q Consensus 408 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 486 (638)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|......-.. .++.+.|.++|+...+. .+.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666777777777888888888877543 3344555555555333 45666688888887776 55667777777777
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006614 487 FGKCGRLSDAVDLFNEMKKLRCKPDV---YTYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (638)
+.+.++.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77888888888888877664 22222 36777777777778888888887777764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0016 Score=56.59 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKP--TANTYNSMILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
.+..+...+...|++++|...|.+.......+ ...+|..+...+...|++++|+..+++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444444555555555555555554332111 1234555555555566666666666555554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0026 Score=55.34 Aligned_cols=95 Identities=14% Similarity=0.002 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 512 VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP--DINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTIL 589 (638)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 589 (638)
...|..+...+...|++++|...|++.......+ ...++..+...+...|++++|...+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445556666666777777777777776543222 13466667777777777777777777776531 11234455555
Q ss_pred HHHH-------ccCCHHHHHHHHHH
Q 006614 590 GCLS-------RAGMFEEAARLMKD 607 (638)
Q Consensus 590 ~~~~-------~~g~~~~A~~~~~~ 607 (638)
..+. ..|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5555 67777755555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0079 Score=48.04 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=29.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006614 166 IVNILGKAKMVNKALSIFYQIKSRKCKPT--ANTYNSMILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
...++-..|+.++|+.+|++....|.... ...+..+...+...|++++|+.++++....
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444455555555555555555543322 223334445555555555555555555543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0065 Score=55.43 Aligned_cols=102 Identities=17% Similarity=0.129 Sum_probs=81.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006614 275 IYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLED 354 (638)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 354 (638)
-+.+.+++++|+..|.+.++..+. |.+.|..-..+|++.|.++.|++-.+..+..+.. -..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 355778889999999988887655 7888888888899999999998888888876433 45688888889999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHH
Q 006614 355 ALKLFNKMEALQCKPNVVTYNTVIKS 380 (638)
Q Consensus 355 A~~~~~~~~~~~~~p~~~~~~~ll~~ 380 (638)
|.+.|++..+ +.|+..+|..-+..
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 9998888876 45877777665544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.17 Score=51.67 Aligned_cols=177 Identities=15% Similarity=0.122 Sum_probs=98.1
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC-CCCC--------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 156 CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR-KCKP--------TANTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
-.|.++.|..+.......-.++.|...|-+.... |++. +...-.+=+.+ --|+|++|.++|-+|-+..
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh-
Confidence 3688888888888877777888888887766544 2221 01111111111 2467777777776665422
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 227 CFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP----TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY 302 (638)
Q Consensus 227 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 302 (638)
..+....+.|++-...++++. .|-.. -...|+.+.+.++....|++|.+.+..-...
T Consensus 765 ---------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------- 825 (1189)
T KOG2041|consen 765 ---------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------- 825 (1189)
T ss_pred ---------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-------
Confidence 234455566666555554432 11111 1345666777777777777777766543211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 303 TYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 361 (638)
...++++.+..++++-..+-..+ +-|....-.+..++.+.|.-++|.+.+-+
T Consensus 826 --e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 826 --ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred --HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 12345555555555544443333 22445556666777777777766665533
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0033 Score=52.11 Aligned_cols=96 Identities=8% Similarity=-0.091 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006614 267 KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVL 346 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 346 (638)
.....+...+...|++++|.++|+.+...++. +...|..|.-++-..|++++|+..|.......+. |...+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 34444555566677777777777766665544 5556666666666777777777777777666543 566666666777
Q ss_pred HccCCHHHHHHHHHHHHH
Q 006614 347 GRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 347 ~~~g~~~~A~~~~~~~~~ 364 (638)
...|+.+.|.+.|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777766554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0019 Score=56.06 Aligned_cols=88 Identities=19% Similarity=0.354 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CChHHHH
Q 006614 509 KPDVYTYNALMSGMVRA-----GMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKS----------------GGPKRAM 567 (638)
Q Consensus 509 ~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~A~ 567 (638)
..|..+|..+++.+.+. |..+=....++.|.+-|+.-|..+|+.|++.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 46788888888888754 56677777788888888888888888888876431 1234456
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHccC
Q 006614 568 EIFTKMQHSEIKPDAVSYNTILGCLSRAG 596 (638)
Q Consensus 568 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 596 (638)
+++++|...|+.||..++..+++.|++.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 66666666666666666666666664443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.047 Score=52.17 Aligned_cols=54 Identities=19% Similarity=0.120 Sum_probs=31.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006614 275 IYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
.+.+..++.+|+..+...++..+. ++..|..-...+...|++++|.--.+.-++
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r 111 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVR 111 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhhee
Confidence 345566666677777666666543 455555555555566666666555544433
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.14 Score=49.54 Aligned_cols=150 Identities=16% Similarity=0.169 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 006614 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLR-CKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSH-NIIL 554 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~ 554 (638)
..+|...++.-.+....+.|..+|-+..+.+ +.+++..+++++..++ .|+...|..+|+--..+ .||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456777777778888999999999999988 6788889999988665 68888999999876654 3554444 4566
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCC
Q 006614 555 NGLAKSGGPKRAMEIFTKMQHSEIKPD--AVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDE 632 (638)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 632 (638)
..+...++-+.|..+|+..+.. +..+ ..+|..+|.--..-|+...+..+=+.|.+ +.|...+.....+-+.-..+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik~d 550 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIKAD 550 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhhcc
Confidence 6778889999999999966542 1222 56899999988999999999998888874 35666555555555544433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.015 Score=55.35 Aligned_cols=92 Identities=18% Similarity=0.237 Sum_probs=49.5
Q ss_pred HHHHHcc-CChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-HH
Q 006614 238 ISAFGKL-GRDISAIRLFDEMKEN----GLQP--TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA-----LTVY-TY 304 (638)
Q Consensus 238 ~~~~~~~-g~~~~A~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~-~~ 304 (638)
...|-.. |++++|++.|++..+. | .+ -..++..++..+.+.|++++|.++|++....... .+.. .|
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 3344455 6777777777766532 2 11 1234556667777777777777777776654221 1111 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 305 TELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 305 ~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
-..+-++...||...|.+.+++....
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 22333555667777777777776654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.016 Score=52.07 Aligned_cols=175 Identities=14% Similarity=0.120 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKC--KPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
..+......+.+.|++++|...|+.+....+ +--..+.-.++.++.+.|+++.|...|++.++..|..|.. .+...+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~ 84 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHH
Confidence 3344445556677777777777777765422 1234455566777778888888888888877766543332 222222
Q ss_pred HHHHcc-------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006614 239 SAFGKL-------------GRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT 305 (638)
Q Consensus 239 ~~~~~~-------------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 305 (638)
.+.+.. +...+|...|+. ++.-|=......+|...+..+.+. =...--
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~---------------li~~yP~S~y~~~A~~~l~~l~~~----la~~e~ 145 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEE---------------LIKRYPNSEYAEEAKKRLAELRNR----LAEHEL 145 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHH---------------HHHH-TTSTTHHHHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHH---------------HHHHCcCchHHHHHHHHHHHHHHH----HHHHHH
Confidence 222211 111223333333 333333344445555444444322 011111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCCHHHH
Q 006614 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCK--PDIVLINNLINVLGRAGRLEDA 355 (638)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A 355 (638)
.+.+.|.+.|.+..|..-++.+++.=+. ........++.+|.+.|..+.+
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 2456677777777777777777765111 1122445566666666666533
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.011 Score=60.83 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=72.7
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 006614 402 GVLPSPFTYSILIDGFCKT-----NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSS 476 (638)
Q Consensus 402 ~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 476 (638)
..+.|...|...+.+.... ++.+.|..+|++..+.. |.....+..+..++.....+. +.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~---------------~~ 395 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQ---------------PL 395 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcC---------------Cc
Confidence 3456677777777664332 23667888888888775 555555555444332211000 00
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006614 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKKL-RCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILN 555 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 555 (638)
...+...+.+...+.... ....+...|..+.......|++++|...++++++.. |+...|..+..
T Consensus 396 ------------~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~ 461 (517)
T PRK10153 396 ------------DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGK 461 (517)
T ss_pred ------------cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 001122223333332221 112233445444444445566666666666666543 45556666666
Q ss_pred HHHhcCChHHHHHHHHHhhh
Q 006614 556 GLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 556 ~~~~~g~~~~A~~~~~~m~~ 575 (638)
.+...|+.++|.+.+++...
T Consensus 462 ~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 462 VYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 66666666666666666553
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.097 Score=46.88 Aligned_cols=181 Identities=12% Similarity=0.065 Sum_probs=111.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 006614 135 LDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKI 214 (638)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 214 (638)
....|+..+..+-+..+.. ....+++.+-.....+..++++++-.. ...++++..+.-.|++.-.
T Consensus 132 ~~~lgnpqesLdRl~~L~~--------~V~~ii~~~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS 196 (366)
T KOG2796|consen 132 QQYLGNPQESLDRLHKLKT--------VVSKILANLEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLS 196 (366)
T ss_pred HHhcCCcHHHHHHHHHHHH--------HHHHHHHHHHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhh
Confidence 3345555555444443322 122333444444444556666655433 2345677777778888888
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHH
Q 006614 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAK-----IYTTLVSIYFKLGEVEKALGLV 289 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-----~~~~li~~~~~~g~~~~A~~~~ 289 (638)
...+.+.++.++. .++.....|++.-.+.|+.+.|...|+...+..-..|.. +.......|.-.+++..|...+
T Consensus 197 ~d~~~~vi~~~~e-~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~ 275 (366)
T KOG2796|consen 197 VDAYHSVIKYYPE-QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFF 275 (366)
T ss_pred HHHHHHHHHhCCc-ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHH
Confidence 8888888886654 677778888888888888888888888766532222333 3333344555667777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006614 290 QEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC 332 (638)
Q Consensus 290 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 332 (638)
.++...+.. |+..-|.-.-+..-.|+..+|++..+.|++..+
T Consensus 276 ~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 276 TEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 777766543 555555544445556777777777777777533
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0056 Score=53.30 Aligned_cols=104 Identities=22% Similarity=0.323 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHc-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006614 229 PDTVTYSALISAFGK-----LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYT 303 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 303 (638)
.|-.+|..++..+.+ .|.++-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 566666666666663 46677777778888888888888888888877654 3221 1111111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006614 304 YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR 351 (638)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 351 (638)
-| -.+-+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 114 ------hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 ------HY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------cC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 01 12334567777777777777777777777777766554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.02 Score=59.10 Aligned_cols=138 Identities=13% Similarity=0.035 Sum_probs=72.7
Q ss_pred CCCCCHHHHHHHHHHHHh--cC---CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC--------ChHHHHHHHHH
Q 006614 190 KCKPTANTYNSMILMLMQ--EG---YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG--------RDISAIRLFDE 256 (638)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~ 256 (638)
..+.+...|...+++... .+ ..++|.++|++..+..+ .....|..+..++.... +...+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP--~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP--DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345577777777766443 22 26678888888877664 33344444333222111 11222333333
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006614 257 MKEN-GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 257 m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
.... ....+...|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|...+++..+.+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2221 122244555555555555566666666666666554 355566666666666666666666666665543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.073 Score=44.98 Aligned_cols=134 Identities=10% Similarity=0.012 Sum_probs=106.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC-CCCHHHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKC-KPTANTYNS 200 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ 200 (638)
-|+..--..+..++.+.|++.+|...|++.+.--...|+...-.+.++....+++..|...++.+-+..+ ..++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3566666788899999999999999999998876778899999999999999999999999999877632 124455667
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMK 258 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 258 (638)
+.+.|...|++++|..-|+...... |+..........+.+.|+.++|..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY---PGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC---CCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 8899999999999999999999865 565555555566778888877765554444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00086 Score=47.34 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=33.4
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 167 VNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
...+.+.|++++|...|+++.+..+. +...+..+..++.+.|++++|...|+++.+..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34555566666666666666655422 55556666666666666666666666665544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.015 Score=46.46 Aligned_cols=109 Identities=13% Similarity=0.026 Sum_probs=78.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--CCHHHHHHHHHH
Q 006614 129 MALIRCLDETRMIGVMWKSIQDMVRSTCVMG--PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMILM 204 (638)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~ 204 (638)
.....++...|+.++|+.+|+..+..|.... ...+..+...+...|++++|..++++.....+. .+......+..+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 3456778889999999999999988775544 356777888899999999999999998765221 122223334567
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+...|+.++|++.+-.... ++...|..-|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la-----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA-----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 7888999999999887766 34445655555554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0011 Score=47.25 Aligned_cols=50 Identities=12% Similarity=0.237 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006614 173 AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 173 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
.|++++|+..|+++....+. +...+..+..+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444333221 333344444444444444444444444444
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0013 Score=46.92 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=33.6
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
.+.|++++|++.|+++....+ .+...+..+...+.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP--DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT--TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456667777777777666554 45556666666666666666666666666654
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.011 Score=56.15 Aligned_cols=132 Identities=9% Similarity=0.031 Sum_probs=86.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHH----HhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----CCC-CCCHH
Q 006614 479 VYAVMIKHFGKCGRLSDAVDLFNEM----KKLRCK-PDVYTYNALMSGMVRAGMIDDAYSLLRRMEE----DGC-VPDIN 548 (638)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~-~p~~~ 548 (638)
.|..|...|.-.|+++.|+...+.- ++.|-+ .....+..+..+++-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555666666678888887766542 222311 1234567778888888888888888876553 221 12344
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 549 SHNIILNGLAKSGGPKRAMEIFTKMQH-----SEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 549 ~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
+.-+|.+.|.-..++++|+.++.+-.. ....-....+.++..+|...|..+.|..+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 555677777777788888888877542 12223456777888888888888888877665543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.29 Score=47.66 Aligned_cols=456 Identities=14% Similarity=0.150 Sum_probs=234.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH--H
Q 006614 134 CLDETRMIGVMWKSIQDMVRSTCVMGP------SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM--L 205 (638)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~ 205 (638)
.+.++++++++.++|.+..+.. ..++ ...+.++++|... +.+........+.+. .| ...|-.+..+ .
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 3567888888888888876642 2222 2345677777654 455555555555443 22 2223344433 4
Q ss_pred HhcCCHhHHHHHHHHHHhC--CCCCC-----------CHHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCCCHHH
Q 006614 206 MQEGYYEKIHELYNEMCNE--GNCFP-----------DTVTYSALISAFGKLGRDISAIRLFDEMKEN----GLQPTAKI 268 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~--~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~ 268 (638)
.+.+++.+|++.+...... +...| |-..-+..++.+...|+++++..+++++..+ ...-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 5788899998888776554 21111 1122255677888999999999988888754 33468888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006614 269 YTTLVSIYFKLGEVEKALGLVQEMKGK-GCALTVYTYTELIKGLGRA-GRVEDAYGLFMNMLKEGCKPDIVLINNLINVL 346 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 346 (638)
|+.++-.+.+. .|-++++. ....-+..|.. +-.|.+. ..++. -.=..+.|....+..++...
T Consensus 170 yd~~vlmlsrS--------YfLEl~e~~s~dl~pdyYem-ilfY~kki~~~d~-------~~Y~k~~peeeL~s~imqhl 233 (549)
T PF07079_consen 170 YDRAVLMLSRS--------YFLELKESMSSDLYPDYYEM-ILFYLKKIHAFDQ-------RPYEKFIPEEELFSTIMQHL 233 (549)
T ss_pred HHHHHHHHhHH--------HHHHHHHhcccccChHHHHH-HHHHHHHHHHHhh-------chHHhhCcHHHHHHHHHHHH
Confidence 88877666543 33333221 11111223332 2233221 11111 00011233333333333333
Q ss_pred Hcc--CCHHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCChHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHh
Q 006614 347 GRA--GRLEDALKLFNKMEALQCKPNVVTY-NTVIKSLFESKAPASEASAWFEKMKANGVL----PSPFTYSILIDGFCK 419 (638)
Q Consensus 347 ~~~--g~~~~A~~~~~~~~~~~~~p~~~~~-~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~----~~~~~~~~li~~~~~ 419 (638)
.-. .+..--+++++.....-+.|+.... ..+...... +..++ ..+.+.+....+. .=..+|..++....+
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~-~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQV-GHFCEAIASSKIEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 221 1122223333333333334443222 222222222 22221 2222222211110 113467778888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHHcc----CCHHHHHHHHHHHHHcCCCCcHHHHHHHH---H
Q 006614 420 TNRVEKAHLLLEEMEEKGFPPCPAA-------YCSLINGYGKA----KRYEAANELFLELKEYCGCSSARVYAVMI---K 485 (638)
Q Consensus 420 ~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li---~ 485 (638)
.++...|.+.+.-+.... |+... -..+.+..|.. .+...=+.+++......+. .......|+ .
T Consensus 311 ~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak 387 (549)
T PF07079_consen 311 QVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAK 387 (549)
T ss_pred HHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHH
Confidence 899999988887776542 22221 11222333311 1223334444444443221 111112222 2
Q ss_pred HHHccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHHc---CChHHHHHHHHHHHHCCCCCC----HHHHHHH
Q 006614 486 HFGKCGR-LSDAVDLFNEMKKLRCKPDVYTYNALM----SGMVRA---GMIDDAYSLLRRMEEDGCVPD----INSHNII 553 (638)
Q Consensus 486 ~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~----~~~~~~---g~~~~A~~~~~~m~~~~~~p~----~~~~~~l 553 (638)
-+-+.|. -++|+.+++...+.. +-|...-|.+. .+|.+. ..+..-..+-+-..+.|++|- ...-|.|
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 2334444 788899998887742 23433333322 233322 233333444444456677764 3344445
Q ss_pred HHH--HHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 006614 554 LNG--LAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSIL 624 (638)
Q Consensus 554 ~~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 624 (638)
.++ +...|++.++.-+-.-+. .+.|++.+|..+.-++....++++|..++.++ +|+..++++=+
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskv 532 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSKV 532 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHHH
Confidence 443 467899998877666665 46799999999999999999999999998864 67777666533
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.002 Score=46.14 Aligned_cols=59 Identities=24% Similarity=0.329 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG-RDISAIRLFDEM 257 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m 257 (638)
+|..+...+...|++++|+..|++.++..+ .+...|..+..++...| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p--~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDP--NNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHST--THHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 333334444444444444444444433332 23333333344444443 344444444333
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.083 Score=47.43 Aligned_cols=176 Identities=12% Similarity=0.044 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRST--CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
...+-.....+...|++.+|++.|+.+.... .+..+.....++.++.+.|+++.|...|+++.+.-+......+-..+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 3445556677888999999999999998752 12334667788889999999999999999987763332222233333
Q ss_pred HHHHh-------------cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHH
Q 006614 203 LMLMQ-------------EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIY 269 (638)
Q Consensus 203 ~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 269 (638)
.+.+. .+...+|+..|+.+++.. =......+|...+..+.+. =...-
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y----------------P~S~y~~~A~~~l~~l~~~----la~~e 144 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY----------------PNSEYAEEAKKRLAELRNR----LAEHE 144 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHH----HHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC----------------cCchHHHHHHHHHHHHHHH----HHHHH
Confidence 33321 112345566666665544 3334444555544444331 11112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHH
Q 006614 270 TTLVSIYFKLGEVEKALGLVQEMKGKGCA--LTVYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A 320 (638)
-.+...|.+.|.+..|..-++.+++.=+. ........++.++.+.|..+.+
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 23567788888888888888888776221 1123445667777777777644
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.017 Score=54.79 Aligned_cols=96 Identities=16% Similarity=-0.045 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCCCcHH
Q 006614 409 TYSILIDGFCKTNRVEKAHLLLEEMEE----KGF-PPCPAAYCSLINGYGKAKRYEAANELFLELKEY-----CGCSSAR 478 (638)
Q Consensus 409 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ 478 (638)
.++.+.+++.-.|+++.|.+.|+.... .|- ........+|...|.-..++++|+..+.+-... ...-...
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 456677777888888888888776432 221 122344556777777777788887777654331 1112355
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 479 VYAVMIKHFGKCGRLSDAVDLFNEMK 504 (638)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (638)
.|.+|..+|...|..++|+.+.+...
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 67778888888888888877766543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.031 Score=51.40 Aligned_cols=99 Identities=17% Similarity=0.156 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006614 230 DTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG---EVEKALGLVQEMKGKGCALTVYTYTE 306 (638)
Q Consensus 230 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~ 306 (638)
|...|-.|...|...|+++.|...|....+.. .+|...+..+..++.... ...++.++|+++...+.. |+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 44444444444444444444444444444321 223333333333332211 123444444444443322 3334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 307 LIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 444444444444444444444443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0026 Score=44.83 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=40.3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
+...+.+.|++++|.+.|+++++..+ -+...+..+...+...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP--DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST--THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44566777777777777777777664 46666777777777777777777777777654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.018 Score=52.89 Aligned_cols=100 Identities=12% Similarity=0.104 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHhhhCCCCCCHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK---MVNKALSIFYQIKSRKCKPTANTYNS 200 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~ 200 (638)
|...|-.|..+|.+.|+++.|...|....+.. +.++..+..+..++.... +-.++..+|+++...... |+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 44445555555555555555555554444431 334444444444332211 233444444444444221 3344444
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+...+..+|++.+|...++.|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC
Confidence 4444444444444444444444433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0029 Score=45.23 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhC
Q 006614 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEG-YYEKIHELYNEMCNE 224 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 224 (638)
++.+|..+...+...|++++|+..|.+..+..+. +...|..+..++.+.| ++++|++.|++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3556677777777777777777777777766433 5666777777777777 577777777776654
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.23 Score=44.59 Aligned_cols=143 Identities=15% Similarity=0.152 Sum_probs=104.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----H
Q 006614 233 TYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTE-----L 307 (638)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-----l 307 (638)
.-+.++..+...|.+.-....+.+.++...+.++.....|.+.-.+.|+.+.|...|+...+..-..|..+.+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34667777778888888999999998877677888888999999999999999999997765433333333333 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006614 308 IKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVI 378 (638)
Q Consensus 308 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 378 (638)
...+..++++.+|.+.+.+....+.. |+...|.-.-+..-.|+..+|.+.++.|.... |...+-++++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC--CccchhhhHH
Confidence 34567788899999999988887554 56666655555555689999999999998754 5554444433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.019 Score=53.47 Aligned_cols=89 Identities=9% Similarity=0.064 Sum_probs=37.1
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHccCCh
Q 006614 171 GKAKMVNKALSIFYQIKSRKCKPT--ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFP-DTVTYSALISAFGKLGRD 247 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 247 (638)
.+.|++++|...|+.+.+..+... ..++-.+...|...|++++|...|+.+.+..+..| ....+..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334444444444444444321110 23344444444455555555555555444322101 122233333344444555
Q ss_pred HHHHHHHHHHHH
Q 006614 248 ISAIRLFDEMKE 259 (638)
Q Consensus 248 ~~A~~~~~~m~~ 259 (638)
++|...++.+.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555554444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.32 Score=49.37 Aligned_cols=87 Identities=18% Similarity=0.288 Sum_probs=40.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH----------
Q 006614 444 AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVY---------- 513 (638)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---------- 513 (638)
+...+...+.+...+.-|-++|..+-.. ..+++.....+++.+|..+-++..+. .||+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 3333333444444444555555544321 23444455555555555555544332 22221
Q ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006614 514 -TYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 514 -~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (638)
-+.-.-.+|.++|+-.+|..+++++...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1122223555666666666666666543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.029 Score=52.19 Aligned_cols=98 Identities=15% Similarity=0.088 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHH
Q 006614 198 YNSMILMLMQEGYYEKIHELYNEMCNEGNCFP-DTVTYSALISAFGKLGRDISAIRLFDEMKENG--LQPTAKIYTTLVS 274 (638)
Q Consensus 198 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~ 274 (638)
|......+.+.|++++|+..|+.+.+..+..+ ....+..+...|...|++++|...|+.+.+.- -+.....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444444556677777777777766553211 02355566666666777777777777666531 0112334444555
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 006614 275 IYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~~ 295 (638)
.+...|+.++|.++|+.+.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666667777777777766655
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.41 Score=43.32 Aligned_cols=181 Identities=13% Similarity=0.101 Sum_probs=103.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSRKC--KPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
+..-+..-.+.|++++|.+.|+.+....+ +-...+.-.++.++.+.+++++|+..+++..+..+..||. .|..-|.+
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Ylkg 115 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKG 115 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHH
Confidence 33344445677888888888888876522 2244556667778888999999999999988887764554 34444444
Q ss_pred HHcc-------CChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006614 241 FGKL-------GRDI---SAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKG 310 (638)
Q Consensus 241 ~~~~-------g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 310 (638)
++.. .+.. +|..-|++.+.+ -|| ..-..+|...+..+... =...=..+.+.
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPn-------------S~Ya~dA~~~i~~~~d~----LA~~Em~Iary 176 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPN-------------SRYAPDAKARIVKLNDA----LAGHEMAIARY 176 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHHHHHH--CCC-------------CcchhhHHHHHHHHHHH----HHHHHHHHHHH
Confidence 4421 1222 233333333332 122 11122222222222211 00011234567
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 311 LGRAGRVEDAYGLFMNMLKEGCKP---DIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
|.+.|.+..|..-+++|++. .+- ....+-.+..+|.+.|-.++|.+.-+-+..
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 88888888888888888876 221 223455666778888888887777666554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.041 Score=44.49 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHhcc
Q 006614 577 EIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA-KGFEYDQITYSSILEAVGKV 630 (638)
Q Consensus 577 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~ 630 (638)
.+.|+..+..+++.+|+..|++..|.++++...+ .+++.+..+|..|++-+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 4556677777777777777777777777776654 56666666777776655443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.008 Score=43.51 Aligned_cols=56 Identities=16% Similarity=0.101 Sum_probs=27.2
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 169 ILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 169 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.|.+.+++++|.++++.+...++. ++..|......+.+.|++++|.+.|+...+.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 344445555555555555444322 44444444555555555555555555555443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.63 Score=44.78 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=12.7
Q ss_pred HHHHHHHHHccCChHHHHHHHH
Q 006614 234 YSALISAFGKLGRDISAIRLFD 255 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~ 255 (638)
|..+.......|+.+-|..+++
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~ 24 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLE 24 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHH
Confidence 4455555556666666666553
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.65 Score=44.39 Aligned_cols=217 Identities=14% Similarity=0.056 Sum_probs=124.7
Q ss_pred cchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HcCCCHHH
Q 006614 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIRCL--DETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNIL--GKAKMVNK 178 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~ 178 (638)
..+..+.+.|+-..+.+| |..|-.++ ...|+-..|.++-.+..+. ...|...+..++.+- .-.|+++.
T Consensus 67 ~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~ 138 (531)
T COG3898 67 ESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYED 138 (531)
T ss_pred hCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHH
Confidence 456777888886666554 44444443 3467777887777665432 344555555555543 34788999
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHH----HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 006614 179 ALSIFYQIKSRKCKPTANTYNSMILM----LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLF 254 (638)
Q Consensus 179 A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 254 (638)
|.+-|+.|.. |+++-..=+++ --+.|..+.|..+-+..-..-+ .-...+...+...|..|+++.|++++
T Consensus 139 Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap--~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 139 ARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP--QLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred HHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc--CCchHHHHHHHHHHhcCChHHHHHHH
Confidence 9999998886 34443222222 2357888888888888776554 34456778888888888888888888
Q ss_pred HHHHHCC-CCCCHHHH--HHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 006614 255 DEMKENG-LQPTAKIY--TTLVSIY---FKLGEVEKALGLVQEMKGKGCALTVY-TYTELIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 255 ~~m~~~g-~~~~~~~~--~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~ 327 (638)
+.-.... +.++..-- ..|+.+- .-.-+...|.+.-.+..+. .||.. .-..-...+.+.|++.++-.+++.+
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 7665432 23332211 1111111 0122344444444443332 23321 1222345666777777777777777
Q ss_pred HHcCCCCCH
Q 006614 328 LKEGCKPDI 336 (638)
Q Consensus 328 ~~~~~~p~~ 336 (638)
.+..+.|++
T Consensus 290 WK~ePHP~i 298 (531)
T COG3898 290 WKAEPHPDI 298 (531)
T ss_pred HhcCCChHH
Confidence 766555553
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.65 Score=45.18 Aligned_cols=99 Identities=13% Similarity=0.125 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRST---CVMGPSVLSEIVNILGK---AKMVNKALSIFYQIKSRKCKPTANTYN 199 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~ 199 (638)
.+-..++-.|....+|+.++++++.+.... ..-++.+-...+-++-+ .|+.++|+.++..+......+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334455556899999999999999987641 12233444445556666 889999999999866666677888888
Q ss_pred HHHHHHHh---------cCCHhHHHHHHHHHHhC
Q 006614 200 SMILMLMQ---------EGYYEKIHELYNEMCNE 224 (638)
Q Consensus 200 ~l~~~~~~---------~g~~~~A~~~~~~~~~~ 224 (638)
.+.+.|-. ....++|++.|.+.-..
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 88777642 11255566666655443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.16 Score=42.49 Aligned_cols=95 Identities=11% Similarity=-0.002 Sum_probs=69.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
......-+...|++++|..+|.-+.-.++. +..-|..|...+-..+++++|+..|......+. .|...+-.....+.
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~p~f~agqC~l 116 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCCccchHHHHHH
Confidence 334445566788888888888888766443 566667777777778888888888887766554 45555666777788
Q ss_pred ccCChHHHHHHHHHHHHC
Q 006614 243 KLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~ 260 (638)
..|+.+.|...|+...++
T Consensus 117 ~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 117 LMRKAAKARQCFELVNER 134 (165)
T ss_pred HhCCHHHHHHHHHHHHhC
Confidence 888888888888887773
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.56 E-value=1.3 Score=46.74 Aligned_cols=179 Identities=20% Similarity=0.246 Sum_probs=106.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT--ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
....-+..+.+...++-|+.+-+.- +..++ ........+-+.+.|++++|...|-+-...-. | ..++.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le--~-----s~Vi~ 405 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE--P-----SEVIK 405 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC--h-----HHHHH
Confidence 3455566666777777776664332 11111 12233344455677888888887766544211 2 33556
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 240 AFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED 319 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 319 (638)
-|....++.+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 666667777777788888888763 66666778888888888887776665544 2221 1123455666677777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 320 AYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKM 362 (638)
Q Consensus 320 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 362 (638)
|..+-..... .......++ -..+++++|++.+..+
T Consensus 482 a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 7666554432 233333333 3457788888877765
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.01 Score=43.63 Aligned_cols=61 Identities=21% Similarity=0.415 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNE----GNCFPD-TVTYSALISAFGKLGRDISAIRLFDEM 257 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 257 (638)
+|+.+...|...|++++|++.|++..+. +...|+ ..++..+...+...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555555555555555555555554421 110011 233444444444444444444444443
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.034 Score=46.95 Aligned_cols=70 Identities=21% Similarity=0.423 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE-----NGLQPTAKI 268 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~ 268 (638)
....++..+...|++++|..+.+.+....+ -|...|..+|.++...|+..+|+++|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP--~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP--YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST--T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 345566667778888888888888887765 5777888888888888888888888776643 366666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.023 Score=41.10 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=39.1
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
..|.+.+++++|++.++.+...++ .+...+......+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP--DDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc--ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456677777777777777777665 45666666677777777777777777777664
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.98 Score=44.00 Aligned_cols=76 Identities=11% Similarity=0.073 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006614 412 ILIDGFCKTNRVEKAHLLLEEMEEKG---FPPCPAAYCSLINGYGK---AKRYEAANELFLELKEYCGCSSARVYAVMIK 485 (638)
Q Consensus 412 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 485 (638)
.++-+|....+++..+++.+.+.... +......-....-++.+ .|+.++|.+++..+......+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445777777777777777776542 12223333344445555 6677777777777555556666666666665
Q ss_pred HH
Q 006614 486 HF 487 (638)
Q Consensus 486 ~~ 487 (638)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.34 E-value=1.7 Score=45.45 Aligned_cols=109 Identities=12% Similarity=0.159 Sum_probs=56.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006614 444 AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV 523 (638)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 523 (638)
+.+--+.-+...|+..+|.++-.+..- ||-..|-.-+.++...+++++-.++-+.++ ...-|.-...+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 334444445555666666555444432 555556666666666666655444443332 1233444556666
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006614 524 RAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 524 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
+.|+.++|..++.+.... . -...+|.+.|++.+|.+.--
T Consensus 756 ~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHH
Confidence 666666666665544321 1 23445556666655555443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.41 Score=40.26 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=22.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 006614 518 LMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKM 573 (638)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 573 (638)
++..+...|++++|..+++.+.... +-|...|..++.+|...|+..+|.++|+++
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3333444444444444444444432 123444444444444444444444444444
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.015 Score=42.81 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhC----CC-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 549 SHNIILNGLAKSGGPKRAMEIFTKMQHS----EI-KPD-AVSYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 549 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
+++.+...|...|++++|+.+|++..+. |- .|+ ..++..+..++...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555554421 10 111 3445555666666666666666665543
|
... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.1 Score=41.46 Aligned_cols=122 Identities=12% Similarity=0.060 Sum_probs=56.0
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChH
Q 006614 169 ILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI 248 (638)
Q Consensus 169 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 248 (638)
.....|++.+|..+|......... +...--.++..|...|+.+.|..++..+...... ........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHHHHHHHHHHhcCC
Confidence 344555555566555555544222 3344445555566666666666666555432211 11111122233333333333
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006614 249 SAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 249 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 294 (638)
+..++-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+..
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333333332 12444555555555556666666555554444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.8 Score=42.33 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHH-HHHH
Q 006614 512 VYTYNALMSGMVRAGMIDDAYSLLRRMEEDG-CVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSY-NTIL 589 (638)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~ 589 (638)
...|..++.+..+..-.+.|..+|-++.+.| +.+++..+++++..++ .|+...|.++|+--... -||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567777787778888999999999999998 5688889999998665 57888999999986543 3555444 4566
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHhccCCcc
Q 006614 590 GCLSRAGMFEEAARLMKDMNAKGFEYD--QITYSSILEAVGKVDEDR 634 (638)
Q Consensus 590 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~ 634 (638)
.-+.+.++-+.|..+|+..... +..+ ..+|..+|+-=.+.|++-
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN 519 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLN 519 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchH
Confidence 7778889999999999966543 3333 347888887766666653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.95 E-value=2.8 Score=44.48 Aligned_cols=179 Identities=11% Similarity=0.093 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSV----LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS 200 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 200 (638)
......-+..+.+...++-|+.+.+.- ..++.. .....+-+.+.|++++|...|-+-... .+| ..
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~ 402 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SE 402 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HH
Confidence 456667788889999999999887752 233333 334445556789999999988776543 122 23
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
++.-|....+...--.+++.+.+.|. .+...-..|+..|.+.++.++-.++.+.-. .|.- ..-....+..+.+.+
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gl--a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGL--ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHccc--ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 55666777777778888888888887 566677889999999999988777766544 2211 112345667777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006614 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 327 (638)
-+++|.-+-..... .......++ -..|++++|++.+..+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 77777766655443 333333333 4568899999888765
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.12 Score=50.92 Aligned_cols=67 Identities=12% Similarity=-0.036 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006614 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTA---NTYNSMILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
+.+...++.+..+|.+.|++++|+..|++..+..+. +. .+|..+..+|...|++++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445566666677777777777777777776665322 12 34666666777777777777777666663
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.64 Score=37.04 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006614 547 INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 547 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 613 (638)
....+..+..+...|+-+.-.+++..+.. +-.+++...-.+..+|.+.|+..++.+++++.-++|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445556666777777777777777654 2246666677777777777777777777777777664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.65 Score=39.03 Aligned_cols=92 Identities=9% Similarity=-0.051 Sum_probs=64.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006614 271 TLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 350 (638)
....-+...|++++|..+|+-+...++. +...|..|..++-..+++++|...|......+.. |...+-....+|...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhC
Confidence 3444556778888888888877766554 5666677777777788888888888776654432 3344455677777888
Q ss_pred CHHHHHHHHHHHHH
Q 006614 351 RLEDALKLFNKMEA 364 (638)
Q Consensus 351 ~~~~A~~~~~~~~~ 364 (638)
+.+.|...|.....
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 88888888877766
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.87 E-value=1 Score=42.68 Aligned_cols=205 Identities=14% Similarity=0.054 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHhhhC-CCCC---CH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRS--TCVMGP---SVLSEIVNILGKAKMVNKALSIFYQIKSR-KCKP---TA 195 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~ 195 (638)
..+|..+..++.+.|.+.++...--.-+.. .+.-+. ..|..+.+.+-+.-++.+++.+-..-... |..| .-
T Consensus 43 f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g 122 (518)
T KOG1941|consen 43 FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG 122 (518)
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc
Confidence 357788888889999888877644322211 011122 34445555555555666666655544333 2222 22
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCCCHH
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNC----FPDTVTYSALISAFGKLGRDISAIRLFDEMKEN----GLQPTAK 267 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~ 267 (638)
....++..++...+.++++++.|+...+.... ......+-.|...|.+..++++|+-+..+..+. ++..=..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 34455778888889999999999998754221 123457889999999999999998877665432 2221111
Q ss_pred HH-----HHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006614 268 IY-----TTLVSIYFKLGEVEKALGLVQEMKG----KGCAL-TVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 268 ~~-----~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
-| ..+.-++...|++.+|.+.-++..+ .|-.+ -......+.+.|...|+.+.|+.-|++...
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 22 3344566778888888777766543 34221 233445677889999999999988887654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.72 Score=43.10 Aligned_cols=154 Identities=9% Similarity=0.008 Sum_probs=109.1
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcC
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAK----IYTTLVSIYFKLG 280 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g 280 (638)
+...|++.+|-..++++++..| .|...+.-.-.++.-.|+.+.-...+++.... ..+|.. .-..+.-++..+|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~P--tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYP--TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHhCc--hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 3457888888888899988776 67788888888888889988888888888754 223433 3334555666889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccCCHHHHHH
Q 006614 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK---PDIVLINNLINVLGRAGRLEDALK 357 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~ 357 (638)
-+++|++.-++..+.+.. |...-.+..+.+...|++.++.++..+-...=-. .-...|-...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 999999999888887654 7777788888888899999998877654321000 011122233444566688999999
Q ss_pred HHHHH
Q 006614 358 LFNKM 362 (638)
Q Consensus 358 ~~~~~ 362 (638)
+|+.-
T Consensus 269 IyD~e 273 (491)
T KOG2610|consen 269 IYDRE 273 (491)
T ss_pred HHHHH
Confidence 88764
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.83 E-value=2.9 Score=43.74 Aligned_cols=108 Identities=15% Similarity=0.182 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006614 409 TYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFG 488 (638)
Q Consensus 409 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 488 (638)
+.+--+.-+...|+..+|.++-.+.. -||...|..-+.++...+++++-.++-.... ++.-|...+..|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 33444444555666666666555443 4555566666666666666665544433322 1344556666666
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 006614 489 KCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLL 535 (638)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (638)
+.|+.++|..++.+.... . -...+|.+.|++.+|.++-
T Consensus 756 ~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 667777777666654331 1 2345666666666666543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.82 E-value=2.1 Score=42.01 Aligned_cols=128 Identities=12% Similarity=0.138 Sum_probs=77.5
Q ss_pred HHccCC-HHHHHHHHHHHHHcCCCCcHHHHHHHH----HHHHc---cCCHHHHHHHHHHHHhCCCCCCH----HHHHHHH
Q 006614 452 YGKAKR-YEAANELFLELKEYCGCSSARVYAVMI----KHFGK---CGRLSDAVDLFNEMKKLRCKPDV----YTYNALM 519 (638)
Q Consensus 452 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~ 519 (638)
+.+.|. -++|.++++.+.+- .+.|...-|.+. ..|.. ...+..-+.+-+-+.+.|++|-. ..-|-|.
T Consensus 389 lW~~g~~dekalnLLk~il~f-t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQF-TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 344444 66677777766653 122322222211 12211 12233344444445566776643 2344444
Q ss_pred HH--HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHH
Q 006614 520 SG--MVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNT 587 (638)
Q Consensus 520 ~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 587 (638)
++ +..+|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|..++..+ +|+..++++
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 43 4578999988766555554 6799999999999999999999999999976 567776664
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.13 Score=46.81 Aligned_cols=91 Identities=19% Similarity=0.182 Sum_probs=54.9
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHccCC
Q 006614 170 LGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT-VTYSALISAFGKLGR 246 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~ 246 (638)
+.+.|++.+|...|....+..+. -...++-.|...+...|++++|...|..+.+..+..|.. ..+..|.....+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 34555677777766666665321 233445556667777777777777777766655433332 556666666666666
Q ss_pred hHHHHHHHHHHHHC
Q 006614 247 DISAIRLFDEMKEN 260 (638)
Q Consensus 247 ~~~A~~~~~~m~~~ 260 (638)
.++|...|+++.+.
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.8 Score=41.12 Aligned_cols=162 Identities=9% Similarity=-0.021 Sum_probs=84.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHHcCC-CHHHHHHHHHHhhhC--------CCCCCH----
Q 006614 136 DETRMIGVMWKSIQDMVRSTCVMGPSV-------LSEIVNILGKAK-MVNKALSIFYQIKSR--------KCKPTA---- 195 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g-~~~~A~~~~~~~~~~--------~~~~~~---- 195 (638)
.+.|+++.|..++.+........++.. +..+.....+.+ +++.|..++++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 456666766666666544321222221 222233334444 777776666554322 122222
Q ss_pred -HHHHHHHHHHHhcCCH---hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006614 196 -NTYNSMILMLMQEGYY---EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTT 271 (638)
Q Consensus 196 -~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 271 (638)
.+...++.+|...+.. ++|..+.+.+....+. ....+..-+..+.+.++.+++.+++..|+..- .-....+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~--~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN--KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 3455667777776654 4566677777665542 24445455666666788888888888888752 213334444
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHhCCCCCCH
Q 006614 272 LVSIY---FKLGEVEKALGLVQEMKGKGCALTV 301 (638)
Q Consensus 272 li~~~---~~~g~~~~A~~~~~~m~~~~~~~~~ 301 (638)
+++.+ ... ....|...+..+....+.|..
T Consensus 161 ~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 44443 332 234555555555544444433
|
It is also involved in sporulation []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.14 Score=50.34 Aligned_cols=66 Identities=8% Similarity=-0.071 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP----SVLSEIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
+.+...|+.+..+|.+.|++++|+..|+..++. .|+. .+|+.+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 446789999999999999999999999998884 4543 35899999999999999999999998875
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.93 Score=46.26 Aligned_cols=101 Identities=19% Similarity=0.169 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006614 300 TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIK 379 (638)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 379 (638)
+..+...+...+.+...+.-|-++|..|-. ...++......+++++|..+-+...+ ..||+.- ...+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~--pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYM--PYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccc--hHHH
Confidence 344555555556666777777788777643 23456677778888888888777654 2233321 1111
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006614 380 SLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK 436 (638)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 436 (638)
.+....+.. ..-.+|.+.|+-.+|..+++++...
T Consensus 813 wLAE~DrFe-----------------------EAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 813 WLAENDRFE-----------------------EAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HhhhhhhHH-----------------------HHHHHHHHhcchHHHHHHHHHhhhh
Confidence 112222211 1224567778888888888877654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.16 Score=46.20 Aligned_cols=99 Identities=11% Similarity=0.038 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC--CCCHHHHHHHH
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTC--VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKC--KPTANTYNSMI 202 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~ 202 (638)
.|+.-+. +.+.|++.+|...|..+++... .-.+..+.-|..++...|++++|..+|..+.+..+ +--++++--+.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5766655 4567889999999999998631 23457788899999999999999999999977632 22457788888
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
....+.|+-++|...|+++.+..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999874
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.3 Score=38.72 Aligned_cols=92 Identities=21% Similarity=0.157 Sum_probs=55.0
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHcc
Q 006614 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT---VTYSALISAFGKL 244 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 244 (638)
.+++..|+.+.|++.|.+....- +-....||.-..++--+|+.++|++-+++..+..+. ... ..|..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~-~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGD-QTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHh
Confidence 34566677777777777766552 236666777777777777777777777776655432 111 1222233445556
Q ss_pred CChHHHHHHHHHHHHCC
Q 006614 245 GRDISAIRLFDEMKENG 261 (638)
Q Consensus 245 g~~~~A~~~~~~m~~~g 261 (638)
|+.+.|..-|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 67777777776666655
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.67 E-value=3 Score=42.64 Aligned_cols=133 Identities=8% Similarity=0.088 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH
Q 006614 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTAN-TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL 237 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 237 (638)
+...+..++.--....+.+.+..++..+... .|... -|......=.+.|..+.+.++|++-+..-+ -.+..|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip--~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIP--LSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh--hHHHHHHHH
Confidence 3344444444333333445555566665543 23322 334444444556666666666666655321 233334333
Q ss_pred HHHHH-ccCChHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006614 238 ISAFG-KLGRDISAIRLFDEMKEN-GLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 238 ~~~~~-~~g~~~~A~~~~~~m~~~-g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
..-++ ..|+.....+.|+...+. |..- ....|...|..-..++++.....+++..++.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 33322 334555555555555543 2111 2334555555555556666666666665553
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.45 Score=38.95 Aligned_cols=83 Identities=13% Similarity=0.186 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH
Q 006614 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKC--KPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL 237 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 237 (638)
+..+..-.....+.|++++|.+.|+.+..+-+ +-...+...++.+|.+.|++++|+..+++.++.++..|+ .-|...
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHH
Confidence 34444445556677888888888888887622 224556667888899999999999999999888876555 445555
Q ss_pred HHHHHc
Q 006614 238 ISAFGK 243 (638)
Q Consensus 238 ~~~~~~ 243 (638)
+.+++.
T Consensus 89 ~~gL~~ 94 (142)
T PF13512_consen 89 MRGLSY 94 (142)
T ss_pred HHHHHH
Confidence 555443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.67 Score=44.75 Aligned_cols=140 Identities=17% Similarity=0.080 Sum_probs=95.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006614 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421 (638)
Q Consensus 342 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 421 (638)
-.+.|.+.|++..|...|+++...= .+...-+ .+. .+..... -...+..+.-++.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l-------------~~~~~~~-~ee-~~~~~~~-------k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFL-------------EYRRSFD-EEE-QKKAEAL-------KLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHh-------------hccccCC-HHH-HHHHHHH-------HHHHhhHHHHHHHhhh
Confidence 3456788899999999988875520 0111111 111 1111222 2345677888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHH-HHHHH
Q 006614 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSD-AVDLF 500 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~ 500 (638)
++..|++.-++.++.+ ++|......-..++...|+++.|...|+++.+. -+.|-.+-+.++.+-.+..+..+ ..++|
T Consensus 272 ~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~-~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL-EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987 888888888899999999999999999999886 33445555666665555544433 35666
Q ss_pred HHHHh
Q 006614 501 NEMKK 505 (638)
Q Consensus 501 ~~m~~ 505 (638)
..|..
T Consensus 350 ~~mF~ 354 (397)
T KOG0543|consen 350 ANMFA 354 (397)
T ss_pred HHHhh
Confidence 66644
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.23 Score=40.22 Aligned_cols=99 Identities=10% Similarity=-0.023 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
|..++..++.++++.|+.+....+++..-.- .++... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI--~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGI--DVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCC--CCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 4567788888888888888888877665332 111000 0000 1122234566667777777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+|+.+|++..|+++.+...+..+.+-+...|..|+.-..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 777777777777777666665554445566666665444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.36 Score=39.51 Aligned_cols=87 Identities=6% Similarity=-0.082 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRST--CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+...+-.-.....+.|++++|.+.|+.+...- .+-...+-..++.+|.+.|++++|...+++..+..+..-...|-..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 34445555666778999999999999988762 1234566777889999999999999999999988665555566666
Q ss_pred HHHHHhcCC
Q 006614 202 ILMLMQEGY 210 (638)
Q Consensus 202 ~~~~~~~g~ 210 (638)
+.+++.-..
T Consensus 89 ~~gL~~~~~ 97 (142)
T PF13512_consen 89 MRGLSYYEQ 97 (142)
T ss_pred HHHHHHHHH
Confidence 666654433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.35 Score=48.87 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=89.7
Q ss_pred HHHHhcCChHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 006614 133 RCLDETRMIGVMWKSIQ--DMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY 210 (638)
Q Consensus 133 ~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 210 (638)
+...-+++++++.+.+. +++. .......+.++..+.+.|..+.|+.+-. |+. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCC
Confidence 34445677777666554 1221 1224557777777788888888877622 322 23344566788
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006614 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQ 290 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 290 (638)
++.|.+..++. ++...|..|.....+.|+++-|.+.|.+..+ |..|+-.|.-.|+.++-.++.+
T Consensus 334 L~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 334 LDIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHH
Confidence 87777764332 5667788888888888888888877766543 4556667777777777777776
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006614 291 EMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMN 326 (638)
Q Consensus 291 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 326 (638)
.....|- ++....++.-.|++++..+++.+
T Consensus 398 ~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 398 IAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 6665542 34444455556666666666544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.48 E-value=2.6 Score=40.67 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=33.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHH
Q 006614 417 FCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDA 496 (638)
Q Consensus 417 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 496 (638)
+...|+...|.++-++.. .|+...|...+.+++..+++++-.++... .-++.-|..++.++.+.|+..+|
T Consensus 187 li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 334444444444433331 24444444455555555555444433211 11233444455555555555555
Q ss_pred HHHHHH
Q 006614 497 VDLFNE 502 (638)
Q Consensus 497 ~~~~~~ 502 (638)
..+..+
T Consensus 257 ~~yI~k 262 (319)
T PF04840_consen 257 SKYIPK 262 (319)
T ss_pred HHHHHh
Confidence 544444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.28 Score=47.28 Aligned_cols=97 Identities=16% Similarity=0.090 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 006614 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLV 273 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li 273 (638)
...++.+...+.+.+++.+|++.-+..+...+ +|+.....-..++...|+++.|+..|+++.+. .| |..+-+-|+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~--~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~ 332 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDP--NNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELI 332 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 44567777788888888888888888888776 77888778888888888888888888888875 45 444455555
Q ss_pred HHHHhcCCH-HHHHHHHHHHHhC
Q 006614 274 SIYFKLGEV-EKALGLVQEMKGK 295 (638)
Q Consensus 274 ~~~~~~g~~-~~A~~~~~~m~~~ 295 (638)
.+--+...+ ++..++|..|...
T Consensus 333 ~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 333 KLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 555555544 3446777777653
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.37 E-value=1.9 Score=38.54 Aligned_cols=209 Identities=11% Similarity=0.087 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
-...|.--..+|....+|+.|...+.+..+. ..+.. ..|.....++.|.-+..++.+. .--+..|+--..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~--yEnnr------slfhAAKayEqaamLake~~kl--sEvvdl~eKAs~ 99 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKG--YENNR------SLFHAAKAYEQAAMLAKELSKL--SEVVDLYEKASE 99 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--HHhcc------cHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 4567777778888888888888877776541 11111 1223334456666666666654 223344666667
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHh
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN---G--LQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g--~~~~~~~~~~li~~~~~ 278 (638)
.|...|.++.|-..+++.-+. ...-+.++|++++.+...- + .+.-...+.....++.+
T Consensus 100 lY~E~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 777778777766666554321 1112333444444433211 0 00011223334445556
Q ss_pred cCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHccC
Q 006614 279 LGEVEKALGLVQEMKGK----GCALT-VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC---KPDIVLINNLINVLGRAG 350 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g 350 (638)
...+++|-..+.+-... .-.++ -..|...|-.+.-.+++..|.+.++.-.+.+- .-+..+...|+.+| ..|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccC
Confidence 66665555444332211 11111 12344555566667778888887777544321 12445666666665 356
Q ss_pred CHHHHHHHHH
Q 006614 351 RLEDALKLFN 360 (638)
Q Consensus 351 ~~~~A~~~~~ 360 (638)
|.+++.+++.
T Consensus 242 D~E~~~kvl~ 251 (308)
T KOG1585|consen 242 DIEEIKKVLS 251 (308)
T ss_pred CHHHHHHHHc
Confidence 6666655543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.31 E-value=1.1 Score=46.08 Aligned_cols=82 Identities=17% Similarity=0.069 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCChHHHH
Q 006614 492 RLSDAVDLFNEMKKLRCKPDVYTYNAL-MSGMVRAGMIDDAYSLLRRMEEDGC---VPDINSHNIILNGLAKSGGPKRAM 567 (638)
Q Consensus 492 ~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~m~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~ 567 (638)
..+.|.++++.+.+. -|+...|... ...+...|+.++|++.|++...... +.....+--+...+.-.+++++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 445555555555553 3444443322 2233445666666666665442110 011222223444455556666666
Q ss_pred HHHHHhhh
Q 006614 568 EIFTKMQH 575 (638)
Q Consensus 568 ~~~~~m~~ 575 (638)
+.|..+.+
T Consensus 326 ~~f~~L~~ 333 (468)
T PF10300_consen 326 EYFLRLLK 333 (468)
T ss_pred HHHHHHHh
Confidence 66666665
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.7 Score=46.75 Aligned_cols=157 Identities=14% Similarity=0.094 Sum_probs=87.5
Q ss_pred HHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHH
Q 006614 417 FCKTNRVEKAHLLLEEME-EKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSD 495 (638)
Q Consensus 417 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 495 (638)
..-.++++.+.+..+.-. -..+ +......++..+-+.|-.+.|+++..+-.. -.....++|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHH
Confidence 344667777666654111 1111 244566777777777877777776544322 1334456777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 496 AVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 496 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
|.++.++. ++...|..|.......|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+....
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 77665432 3566788888888888888888887776543 34455566777777766666666655
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 576 SEIKPDAVSYNTILGCLSRAGMFEEAARLMKDM 608 (638)
Q Consensus 576 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 608 (638)
.|- ++....++.-.|+.++..+++.+-
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 442 444444555567777766665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.18 E-value=1.6 Score=36.71 Aligned_cols=123 Identities=13% Similarity=0.139 Sum_probs=61.1
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHH-HHHHH--HHHHHccCC
Q 006614 171 GKAKMVNKALSIFYQIKSRKCKPTAN-TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTV-TYSAL--ISAFGKLGR 246 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~g~ 246 (638)
++.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-...+. |... -...| .-.+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhcccc
Confidence 45566677777777776665442222 1222334455667777777777776654433 3322 11111 122334455
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006614 247 DISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 247 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 294 (638)
+++.....+.+...|-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 555555555544433322333334444455555555555555555544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.14 E-value=3.3 Score=39.88 Aligned_cols=127 Identities=17% Similarity=0.128 Sum_probs=62.1
Q ss_pred HHHHHHHHHHh--cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH--HccCChHHHHHHHHHHHHCCCCCCHHH--HH
Q 006614 197 TYNSMILMLMQ--EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF--GKLGRDISAIRLFDEMKENGLQPTAKI--YT 270 (638)
Q Consensus 197 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~ 270 (638)
.|..|-.+++. .|+-..|.++-.+..+.-. .|....-.++.+- .-.|+++.|.+-|+.|... |.... ..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~lls--sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLR 158 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLS--SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLR 158 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhh--ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHH
Confidence 46666666554 4566666666555443211 3333333333332 2346666666666666652 22111 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006614 271 TLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
.|.-..-+.|..+.|...-+..-..-.. -...+...+...|..|+++.|+++.+.-..
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 1222223455555555555555444322 334555555566666666666666555443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.6 Score=36.30 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=8.4
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 006614 518 LMSGMVRAGMIDDAYSLLRR 537 (638)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~ 537 (638)
++..|.+.+-++++..++.+
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHh
Confidence 33444444444444444433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.91 E-value=2.8 Score=39.92 Aligned_cols=130 Identities=15% Similarity=0.329 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh--cC----CHhHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHccCCh
Q 006614 176 VNKALSIFYQIKSRKCKPTANTYNSMILMLMQ--EG----YYEKIHELYNEMCNEGNC--FPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 176 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 247 (638)
+++...+++.|.+.|+.-+..+|-+....+.. .. ...+|.++|+.|.+..+. .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456677888888887777666553333322 22 245678888888876543 2344555555443 23332
Q ss_pred ----HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006614 248 ----ISAIRLFDEMKENGLQPTAK--IYTTLVSIYFKLGE--VEKALGLVQEMKGKGCALTVYTYTEL 307 (638)
Q Consensus 248 ----~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~l 307 (638)
+.+..+++.+.+.|+..+.. ....++...-.... ..++.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 34555566666655544322 22222222111111 23555666666666665555554443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.98 Score=42.26 Aligned_cols=154 Identities=10% Similarity=0.019 Sum_probs=103.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHHccCCHH
Q 006614 418 CKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY---CGCSSARVYAVMIKHFGKCGRLS 494 (638)
Q Consensus 418 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~ 494 (638)
-..|+..+|-..++++.+.- |.|..++...-++|...|+.+.-...++++... +.|....+-....-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 35778888888888888763 778888888888888889888888888888764 22222333344455566788888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChHHHHHHH
Q 006614 495 DAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCV----PDINSHNIILNGLAKSGGPKRAMEIF 570 (638)
Q Consensus 495 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~l~~~~~~~g~~~~A~~~~ 570 (638)
+|.+.-++..+.+ +-|.-.-.++.+.+.-.|++.++.++..+-... .. .-...|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9988888887764 345556666777777788888888876654432 11 00111222223345567888888888
Q ss_pred HHhh
Q 006614 571 TKMQ 574 (638)
Q Consensus 571 ~~m~ 574 (638)
+.-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 8744
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.73 E-value=1.7 Score=44.70 Aligned_cols=164 Identities=17% Similarity=0.134 Sum_probs=107.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHH------HHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCCH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTAN------TYNSMILMLMQ----EGYYEKIHELYNEMCNEGNCFPDT 231 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 231 (638)
.+..++...+=.|+-+.+++.+.+..+.+--..+. .|+.++..++. ....+.|.++++.+.... |+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCc
Confidence 45667777777788888888888776542111222 24444444443 456788999999998865 666
Q ss_pred HHHHHH-HHHHHccCChHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006614 232 VTYSAL-ISAFGKLGRDISAIRLFDEMKEN--GL-QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTEL 307 (638)
Q Consensus 232 ~~~~~l-~~~~~~~g~~~~A~~~~~~m~~~--g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 307 (638)
..|... .+.+...|++++|++.|+..... .. +.....+--+.-.+.-.++|++|.+.+..+.+.+-- +...|.-+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHH
Confidence 655443 45666779999999999876532 11 223445566777788899999999999999886432 33333333
Q ss_pred -HHHHHhcCCH-------HHHHHHHHHHHH
Q 006614 308 -IKGLGRAGRV-------EDAYGLFMNMLK 329 (638)
Q Consensus 308 -i~~~~~~g~~-------~~A~~~~~~~~~ 329 (638)
.-++...|+. ++|..+|.+...
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3345567777 888888888764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.72 E-value=5.8 Score=40.63 Aligned_cols=134 Identities=10% Similarity=0.082 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|+.++.---.....+.+..++..++.. .|.--.-|......-.+.|..+.+.++|++-... ++.++..|......
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 344555554444444445555566666542 2222233444444555667777777777776653 44566666655544
Q ss_pred HH-hcCCHhHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 205 LM-QEGYYEKIHELYNEMCNEGN-CFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 205 ~~-~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
++ ..|+.+...+.|+......+ ..-....|...|..-...++.....+++++.++.
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 43 34666667777777655322 2234455666666666777777777777777764
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.3 Score=44.33 Aligned_cols=105 Identities=19% Similarity=0.259 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHH
Q 006614 509 KPDVYTYNALMSGMVRA-----GMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAV 583 (638)
Q Consensus 509 ~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 583 (638)
+.|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|++.+=+.. +.|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence 34566666666665532 455666667778888888888888888777654321 122221
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCC
Q 006614 584 SYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDE 632 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 632 (638)
+....--|= ..-+=++.++++|...|+-||..+-..|++++++.|.
T Consensus 128 -fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 -FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred -HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111111111 1223467788888888888888888888888877664
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.65 E-value=3.4 Score=37.62 Aligned_cols=223 Identities=19% Similarity=0.133 Sum_probs=117.9
Q ss_pred CChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 006614 139 RMIGVMWKSIQDMVRSTCV-MGPSVLSEIVNILGKAKMVNKALSIFYQIKSR-KCKPTANTYNSMILMLMQEGYYEKIHE 216 (638)
Q Consensus 139 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 216 (638)
+....+...+......... ............+...+++..+...+...... ........+......+...+.+..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444455555554442211 12455555666666666666666666665542 123345555556666666666777777
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHH-HHHccCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 217 LYNEMCNEGNCFPDTVTYSALIS-AFGKLGRDISAIRLFDEMKENGL--QPTAKIYTTLVSIYFKLGEVEKALGLVQEMK 293 (638)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 293 (638)
.+......... +......... .+...|+++.|...+++...... ......+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPD--PDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCC--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 77766654432 1122222222 56666777777777766644211 0123333333444556666777777776666
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 294 GKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 294 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
..........+..+...+...++++.|...+......... ....+..+...+...+..+.+...+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5432212455555666666666677777776666654222 123333333333455556666666666554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.57 E-value=1.9 Score=39.98 Aligned_cols=151 Identities=17% Similarity=0.174 Sum_probs=107.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 006614 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEG 209 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 209 (638)
.-...+...|++.+|..+|...+... +-+......++.+|...|+++.|..++..+....-.........-+..+.+..
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 44556778999999999999988753 44567778889999999999999999999876532222233233455666666
Q ss_pred CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHH
Q 006614 210 YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN--GLQPTAKIYTTLVSIYFKLGEVEKA 285 (638)
Q Consensus 210 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A 285 (638)
...+..++-.+... ++ .|...-..+...+...|+.++|++.+-.+.++ |. -|...-..|+..+.-.|.-+.+
T Consensus 218 ~~~~~~~l~~~~aa-dP--dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 218 ATPEIQDLQRRLAA-DP--DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred cCCCHHHHHHHHHh-CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCCCCHH
Confidence 66666666555554 32 47788888899999999999999887776654 33 3566777788888777744433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.54 E-value=3.2 Score=37.22 Aligned_cols=192 Identities=13% Similarity=0.093 Sum_probs=104.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
.|.....+|-...++++|...+.+..+. .+.+...|. ....++.|.-+.+++.+.. .-+..|+.-...|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kls---Evvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLS---EVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH
Confidence 4555566777778888888776666532 111222121 1334555666666665532 2234566667778
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhcCC
Q 006614 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK---GC--ALTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~~~~~~~~~li~~~~~~g~ 316 (638)
...|..+.|-..+++.-+. ..+.++++|++++++.... +- ..-...+......+.+..+
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 8888888887777766542 2344566666666654321 10 1112334455566777777
Q ss_pred HHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHH
Q 006614 317 VEDAYGLFMNMLKE----GCKPDI-VLINNLINVLGRAGRLEDALKLFNKMEALQ---CKPNVVTYNTVIKS 380 (638)
Q Consensus 317 ~~~A~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~ll~~ 380 (638)
+++|-..+.+-... .-.++. ..|-..|-.|.-..|+..|.+.++.--+.+ -.-+..+...|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 77776665543321 011121 234455556666778888888888743322 12234444555544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.23 Score=46.03 Aligned_cols=94 Identities=10% Similarity=0.093 Sum_probs=54.7
Q ss_pred HHHHHhhhCCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 006614 110 QFFKWAGRRRNFEH--NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIK 187 (638)
Q Consensus 110 ~~f~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 187 (638)
.|+.|+..++..-. -..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.
T Consensus 136 ~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 136 RFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 35556544432111 13455666666666666666666666666643 4455666666667777776666666666664
Q ss_pred h-----CCCCCCHHHHHHHHHH
Q 006614 188 S-----RKCKPTANTYNSMILM 204 (638)
Q Consensus 188 ~-----~~~~~~~~~~~~l~~~ 204 (638)
+ .|+.|...+......+
T Consensus 215 ~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 215 KTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHhhhhcCCCccHHHHHHHHHH
Confidence 4 3556666555544444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.54 Score=42.79 Aligned_cols=106 Identities=18% Similarity=0.236 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 439 PPCPAAYCSLINGYGKA-----KRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVY 513 (638)
Q Consensus 439 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 513 (638)
.-|..+|...+..+... +.++=....+..|.+.|+..|..+|+.|++.+-+-. +.|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence 34455565555555432 344444455555555555555556555555432211 112111
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006614 514 TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGP 563 (638)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 563 (638)
.-...+ -| -.+-+-++.++++|..+|+.||..+-..+++++.+.|-.
T Consensus 128 fQ~~F~-HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 FQKVFL-HY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHh-hC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 111111 11 122345788999999999999999999999999887754
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.45 E-value=2.5 Score=35.18 Aligned_cols=14 Identities=0% Similarity=0.188 Sum_probs=5.3
Q ss_pred CChHHHHHHHHHHH
Q 006614 139 RMIGVMWKSIQDMV 152 (638)
Q Consensus 139 ~~~~~a~~~~~~~~ 152 (638)
+.+......++.+.
T Consensus 21 ~~~~~l~~yLe~~~ 34 (140)
T smart00299 21 NLLEELIPYLESAL 34 (140)
T ss_pred CcHHHHHHHHHHHH
Confidence 33333333333333
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.37 E-value=3.9 Score=37.19 Aligned_cols=205 Identities=19% Similarity=0.133 Sum_probs=152.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRS-TCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
....+......+...+.+..+...+...... ........+......+...+++..+...+.........+ ........
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 136 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLA 136 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHH
Confidence 3577888888999999999999998887752 245566677778888888889999999999998764443 22233333
Q ss_pred H-HHHhcCCHhHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 006614 203 L-MLMQEGYYEKIHELYNEMCNEGNC-FPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKL 279 (638)
Q Consensus 203 ~-~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~ 279 (638)
. .+...|+++.|...|++.....+. ......+......+...++.+.+...+....+.. .. ....+..+...+...
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHc
Confidence 3 788999999999999999663320 1234445555555778899999999999998863 23 467788888999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006614 280 GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
++++.|...+......... ....+..+...+...+..+++...+.......
T Consensus 216 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 216 GKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred ccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999998876432 23444445555557778999999998888763
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.33 E-value=2.2 Score=34.16 Aligned_cols=65 Identities=20% Similarity=0.208 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 006614 408 FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG 473 (638)
Q Consensus 408 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 473 (638)
......++.....|+-++-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++.+.|.
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 334555666777777777777777776544 67777777777888888888877777777777654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.32 E-value=4.9 Score=38.13 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 268 IYTTLVSIYFKLGEV---EKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 268 ~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
++..++.+|...+.. ++|.++++.+...... .+..+..-++.+.+.++.+++.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 455566666665553 4455555555443322 2344444455555677777777777777765
|
It is also involved in sporulation []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=3.8 Score=40.82 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=54.6
Q ss_pred hHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 006614 105 INVKIQFFKWAGRRRNFEHN-STTYMALIRCLDE---------TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK 174 (638)
Q Consensus 105 ~~~a~~~f~~~~~~~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (638)
...|+.+|..+.......|+ ...|..+.-++.. .....+|.++.+..++.+ +.|+.....+..+..-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 35677777777633333332 3344333333321 112223444444444432 344445555555444455
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 175 MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 175 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+++.|..+|++....++. ...+|......+.-.|+.++|.+.+++..+..
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 555555555555544222 33344444444444555555555555544443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.16 Score=32.12 Aligned_cols=30 Identities=7% Similarity=0.038 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
++..+..+|.+.|++++|.++|+++++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 344455555555555555555555555443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.27 E-value=4.2 Score=37.06 Aligned_cols=184 Identities=10% Similarity=-0.015 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRST--CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
+..|-.-+....+.|++++|.+.|+.+.+.. .+-...+...++-++.+.++++.|+...++.....+......|-..+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3444455556667899999999999988652 23345667777788889999999999999988774444444566666
Q ss_pred HHHHhc-------CC---HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006614 203 LMLMQE-------GY---YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTL 272 (638)
Q Consensus 203 ~~~~~~-------g~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 272 (638)
.+++.- .+ ..+|+.-|++++..- ||+.- ...|..-+..+... =...=..+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~Y-------------a~dA~~~i~~~~d~----LA~~Em~I 173 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNSRY-------------APDAKARIVKLNDA----LAGHEMAI 173 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCCcc-------------hhhHHHHHHHHHHH----HHHHHHHH
Confidence 666532 22 234555566666644 33221 11122211111110 00011235
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006614 273 VSIYFKLGEVEKALGLVQEMKGKGCALT---VYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
.+.|.+.|.+..|..-+++|.+. .+-+ ...+-.+..+|...|-.++|...-.-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 56677777777777777777765 2212 22344455667777777777665544443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.25 E-value=3.2 Score=39.54 Aligned_cols=202 Identities=15% Similarity=0.110 Sum_probs=122.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHH----hhhC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC---CHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQ----IKSR-KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFP---DTVT 233 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~----~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~ 233 (638)
++..+..+..+.|.+++++..--. ..+. .-..-..+|..+.+++-+--++.+++.+-..-.......| -...
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 344455666677776666543211 1111 0011234455666666666667777666555443221112 1133
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCC---C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHH
Q 006614 234 YSALISAFGKLGRDISAIRLFDEMKENGL---Q--PTAKIYTTLVSIYFKLGEVEKALGLVQEMKG----KGCALTVYTY 304 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~~~ 304 (638)
..++..++...+.++++++.|+...+.-- . ....++..|...|.+..++++|.-+..+..+ .++..-...|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 44577788888899999999998875311 1 1245788999999999999998876655543 2322112223
Q ss_pred HH-----HHHHHHhcCCHHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 305 TE-----LIKGLGRAGRVEDAYGLFMNMLK----EGCKP-DIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 305 ~~-----li~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 363 (638)
.. +.-++...|++..|.+..++..+ .|-.+ -......+.+.|...|+.+.|..-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 32 34467788888888888887655 33221 12344567888999999999888887653
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.25 E-value=6.7 Score=39.37 Aligned_cols=163 Identities=13% Similarity=0.091 Sum_probs=87.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc
Q 006614 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGP-SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQE 208 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 208 (638)
.++.--.+.+++..-++...+.++ +.|+- ..|..+. --.+....+|+++|++..+.|- ..+ +.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE----~~l--------g~ 236 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILLA--EEEASTIVEAEELLRQAVKAGE----ASL--------GK 236 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHH----Hhh--------ch
Confidence 445555667777777777777766 34432 2332221 1234457888888888766421 111 00
Q ss_pred CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006614 209 GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG-LQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 209 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
.+......-+-+........+-...-..+...+-+.|+.++|++.+.+|.+.. ...+..+...|+..+...+.+.++..
T Consensus 237 s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 237 SQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 00111100111111111111223333456666668888888888888887542 11234466778888888888888888
Q ss_pred HHHHHHhCCCC-CCHHHHHHHH
Q 006614 288 LVQEMKGKGCA-LTVYTYTELI 308 (638)
Q Consensus 288 ~~~~m~~~~~~-~~~~~~~~li 308 (638)
++.+-.+...+ --..+|+..+
T Consensus 317 lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHhccccCCchHHHHHHHHH
Confidence 88886543222 1244566544
|
The molecular function of this protein is uncertain. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.17 Score=32.07 Aligned_cols=28 Identities=4% Similarity=-0.002 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
++..+...|.+.|++++|.++|+++.+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444444555555555555555555444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=5.3 Score=39.86 Aligned_cols=163 Identities=16% Similarity=0.100 Sum_probs=95.6
Q ss_pred HHH--HHHHHHHHhc--C---CHhHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHH---------ccCChHHHHHHHHHHH
Q 006614 196 NTY--NSMILMLMQE--G---YYEKIHELYNEMCNEGNCFPD-TVTYSALISAFG---------KLGRDISAIRLFDEMK 258 (638)
Q Consensus 196 ~~~--~~l~~~~~~~--g---~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~---------~~g~~~~A~~~~~~m~ 258 (638)
..| ..++.+.... + ..++|+.+|.+........|+ ...|..+...+. ......+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554442 2 246788888888833222233 333333322221 1234456777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHH
Q 006614 259 ENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP-DIV 337 (638)
Q Consensus 259 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 337 (638)
+.+ +.|......+..+..-.++++.|...|++....++. ...+|....-.+.-.|+.++|.+.+++..+..+.- -..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 765 347777777777777777788888888888776544 45555555555667888888888888866653221 122
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHH
Q 006614 338 LINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 338 ~~~~li~~~~~~g~~~~A~~~~~~ 361 (638)
.....++.|+..+ .+.|.++|-+
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHhh
Confidence 3333344565544 5666666544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.12 E-value=5.1 Score=44.48 Aligned_cols=154 Identities=19% Similarity=0.276 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHH----HHHHHHHHHccCChHH
Q 006614 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVT----YSALISAFGKLGRDIS 249 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~ 249 (638)
+++++|+.-+.++.. ..|.-.++.--+.|.+.+|+.++. |+... |.+....+...+.+++
T Consensus 894 ~ry~~AL~hLs~~~~-------~~~~e~~n~I~kh~Ly~~aL~ly~---------~~~e~~k~i~~~ya~hL~~~~~~~~ 957 (1265)
T KOG1920|consen 894 KRYEDALSHLSECGE-------TYFPECKNYIKKHGLYDEALALYK---------PDSEKQKVIYEAYADHLREELMSDE 957 (1265)
T ss_pred HHHHHHHHHHHHcCc-------cccHHHHHHHHhcccchhhhheec---------cCHHHHHHHHHHHHHHHHHhccccH
Confidence 466777666555542 223334444456777888877753 44444 4444455556677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHH
Q 006614 250 AIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY--TYTELIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 250 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~ 327 (638)
|.-.|+..-+. .--+.+|..+|+|.+|+.+..++... .+.. +-..|+.-+...++.-+|-++..+.
T Consensus 958 Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 958 AALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 77777654331 23466777888888888888776542 1222 2255677778888888888888777
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 328 LKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 328 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 363 (638)
... . ...+..||+...+++|.++.....
T Consensus 1026 ~sd----~----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1026 LSD----P----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred hcC----H----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 654 1 223455666677888877766543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.07 E-value=3.1 Score=41.64 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 515 YNALMSGMVRAGMIDDAYSLLRRMEEDGCV-PDINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
-..+..++-+.|+.++|++.+++|.+.... -+......|+.++...+.+.++..++.+-.+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 344555666778888888888887754211 1234556677778888888888887777643
|
The molecular function of this protein is uncertain. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.00 E-value=2.3 Score=33.98 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=70.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHHccCC
Q 006614 416 GFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSA---RVYAVMIKHFGKCGR 492 (638)
Q Consensus 416 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~ 492 (638)
+....|+.+.|++.|.+.+..- |..+..|+.-.+++.-.|+.++|++-+++..+......- ..|..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4677899999999999888764 677889999999999999999999988888875443322 234444456777888
Q ss_pred HHHHHHHHHHHHhCC
Q 006614 493 LSDAVDLFNEMKKLR 507 (638)
Q Consensus 493 ~~~A~~~~~~m~~~~ 507 (638)
-+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888877766
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.85 E-value=6 Score=37.73 Aligned_cols=139 Identities=14% Similarity=0.230 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--CC----CHHHHHHHHHHhhhCCCC---CCHHHHHHHHHHHHhcCC--
Q 006614 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILGK--AK----MVNKALSIFYQIKSRKCK---PTANTYNSMILMLMQEGY-- 210 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~-- 210 (638)
++...+++.|.+.|...+..++.+..-.... .. ...+|..+|+.|++..+. ++-..+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4666677788888877777666553333332 22 456789999999887432 222233333222 3333
Q ss_pred --HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 211 --YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR---DISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEV 282 (638)
Q Consensus 211 --~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 282 (638)
.+++...|+.+.+.|..+-|...+.+-+-+++.... +..+.++++.+.+.|+++....|..+.-...-.+..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCch
Confidence 356778888888877654555444444444443322 457888999999999998888877665554444443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.48 E-value=4.2 Score=34.41 Aligned_cols=136 Identities=15% Similarity=0.214 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHH-HH-
Q 006614 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPS-VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANT-YN- 199 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~- 199 (638)
.+...|..-++ +++.+..++|+.-|.++.+.|...=+. ..-.......+.|+...|...|.++......|-+.- .-
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34556655554 467788889999999888776443222 233445566788999999999999877644443331 11
Q ss_pred -HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 200 -SMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 200 -~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
.-.-.+..+|.+++.....+-+...+.. --...-..|.-+-.+.|++..|.+.|+.+...
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~-mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNP-MRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCCh-hHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1223456789999998888888766542 44556677888888999999999999988764
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=93.25 E-value=1.9 Score=32.70 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=43.2
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 006614 565 RAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 565 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-.+.+ +.+...+|..+++-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 56666777777788889988888889999999999999998888764 333443777777644
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.92 E-value=11 Score=37.81 Aligned_cols=182 Identities=9% Similarity=0.054 Sum_probs=124.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+.|-....+++..++.+..+.-...+..+|+. ...+...+..++..|... ..+.-..+++++.+..+. |++.-..+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~--~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLE--YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 34666778889999999999988889999988 557788899999999888 567788889988887554 55555556
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHccCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEGNCFP-D---TVTYSALISAFGKLGRDISAIRLFDEMKE-NGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~ 276 (638)
...|-+ ++-+.+...|.++...-.... + ...|..+.... -.+.+.-+++..+... .|...-...+..+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 655554 888888888888876443101 1 12333333321 2456666666666653 34444555666666778
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006614 277 FKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGL 311 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 311 (638)
....++.+|++++..+.+.+-. |..+-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 8889999999999988776533 555555555443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.87 E-value=2.1 Score=37.25 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=50.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHH--HH
Q 006614 479 VYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD--VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP-DINSHN--II 553 (638)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~--~l 553 (638)
.+..+...|++.|+.++|++.|.++.+....+. ...+-.++......+++..+.....++...--.+ |...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455566666777777777777776666543333 2334555666666677776666666555421111 111111 11
Q ss_pred HH--HHHhcCChHHHHHHHHHhh
Q 006614 554 LN--GLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 554 ~~--~~~~~g~~~~A~~~~~~m~ 574 (638)
.. .+...|++.+|-+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 11 1234567777766666654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.80 E-value=6.9 Score=35.00 Aligned_cols=26 Identities=4% Similarity=0.258 Sum_probs=16.0
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 593 SRAGMFEEAARLMKDMNAKGFEYDQI 618 (638)
Q Consensus 593 ~~~g~~~~A~~~~~~m~~~~~~p~~~ 618 (638)
...|++.+|+++|++.....+.-+..
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHH
Confidence 44567777777777776554444333
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.93 Score=33.87 Aligned_cols=63 Identities=16% Similarity=0.234 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 006614 564 KRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 564 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
=++.+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-.+.+ +..+..+|..+++-+
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 355566666666677777777777888888888888888887776643 233445666666543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.68 E-value=6.7 Score=34.59 Aligned_cols=162 Identities=14% Similarity=0.055 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006614 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
|.-+.+||-+.--+...|+++.|.+.|+...+..+. ...+...-.-++.-.|++.-|.+-|...-..++..|=...|--
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 344667888877788888888888888888887544 2233333334445578888888888777766542232233322
Q ss_pred HHHHHHccCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCC-------CHHHHHHH
Q 006614 237 LISAFGKLGRDISAIRLFD-EMKENGLQPTAKIYTTLVSIYF-KLGEVEKALGLVQEMKGKGCAL-------TVYTYTEL 307 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~-~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~-------~~~~~~~l 307 (638)
+. -..-+..+|..-+. +..+ .|..-|...|-.|. ..=..+. +++.+... -.- -..||--+
T Consensus 175 l~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~-a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 175 LN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEET---LMERLKAD-ATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHHH---HHHHHHhh-ccchHHHHHHHHHHHHHH
Confidence 22 23334555554333 3332 24444544333332 2111221 22222211 110 12355556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 006614 308 IKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 308 i~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
.+.+...|+.++|..+|+-.+..
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHHH
Confidence 66677777777777777666554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.65 E-value=1.5 Score=40.82 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE-----NGLQPTAKIYT 270 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~ 270 (638)
.++..++..+...|+++.+.+.++++....+ -+...|..++.+|.+.|+...|++.++.+.+ .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp--~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP--YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3455566677777777777777777777665 5777777777777777777777777776654 36666655554
Q ss_pred HHHHH
Q 006614 271 TLVSI 275 (638)
Q Consensus 271 ~li~~ 275 (638)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.26 E-value=2.2 Score=37.10 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-CHHHHH--H
Q 006614 513 YTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD--INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKP-DAVSYN--T 587 (638)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~--~ 587 (638)
..+..+..-|++.|+.+.|.+.|.++.+....+. ...+-.+++.....|++..+...+.+....--.+ |...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4577888999999999999999999998754444 4456778888899999999999998887521111 221111 1
Q ss_pred HHH--HHHccCCHHHHHHHHHHHH
Q 006614 588 ILG--CLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 588 l~~--~~~~~g~~~~A~~~~~~m~ 609 (638)
... .+...|++.+|.+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 2345789999998887765
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.41 Score=28.64 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666677777777777777777643
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.80 E-value=7.5 Score=33.17 Aligned_cols=32 Identities=19% Similarity=0.499 Sum_probs=17.8
Q ss_pred hhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 006614 186 IKSRKCKPTANTYNSMILMLMQEGYYEKIHEL 217 (638)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 217 (638)
+.+.+++|+...+..+++.+.+.|++.....+
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql 51 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQFSQLHQL 51 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34445556666666666666666665544333
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.70 E-value=16 Score=36.75 Aligned_cols=409 Identities=11% Similarity=0.091 Sum_probs=208.7
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHH
Q 006614 107 VKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK-MVNKALSIFYQ 185 (638)
Q Consensus 107 ~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~ 185 (638)
.-..+|+-+.. .|++|+..|...+.-+-+.+.+.++-.++.+|+... +.++..|..-......-+ +++.|..+|..
T Consensus 89 rIv~lyr~at~--rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 89 RIVFLYRRATN--RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHH--hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 34555655543 457799999999999999999999999999998863 555666655544444433 48999999988
Q ss_pred hhhCCCCCCHHHHHHHHHHH---Hh------------cCCH----hHHHHHHHHHH-----hCCCCCCCHH---H-H---
Q 006614 186 IKSRKCKPTANTYNSMILML---MQ------------EGYY----EKIHELYNEMC-----NEGNCFPDTV---T-Y--- 234 (638)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~---~~------------~g~~----~~A~~~~~~~~-----~~~~~~~~~~---~-~--- 234 (638)
-...++. ++..|-...+.- +. .++. +.....+.... ..+.. +... + -
T Consensus 166 gLR~npd-sp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~-k~~e~~~~~~~d~ 243 (568)
T KOG2396|consen 166 GLRFNPD-SPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAV-KSVELSVAEKFDF 243 (568)
T ss_pred HhhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcch-hhcchHHHHHHHH
Confidence 8877433 444444333221 10 0111 01111110000 00000 0000 0 0
Q ss_pred -----HHHHHHHHcc--C----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006614 235 -----SALISAFGKL--G----RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYT 303 (638)
Q Consensus 235 -----~~l~~~~~~~--g----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 303 (638)
..+++..... + ..+.|.+.++-...... ..+...-....-.-+-+....+|++..+. -|+...
T Consensus 244 ~kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl----~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm 317 (568)
T KOG2396|consen 244 LKELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDL----QHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESM 317 (568)
T ss_pred HHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhc----cchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHH
Confidence 0011111110 0 12445555554443211 11111122222222233334666665543 235555
Q ss_pred HHHHHHHHHhcC------CHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHccCCHH-HHHHHHHHHHHCCCCCChhhH
Q 006614 304 YTELIKGLGRAG------RVEDAYGLFMNMLKEG-CKP-DIVLINNLINVLGRAGRLE-DALKLFNKMEALQCKPNVVTY 374 (638)
Q Consensus 304 ~~~li~~~~~~g------~~~~A~~~~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~p~~~~~ 374 (638)
|+..|..|...- .+..-..+|+.....+ ..+ ...-|..+.-.++..+... .|..+..+. ..-+...|
T Consensus 318 ~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~----f~~s~k~~ 393 (568)
T KOG2396|consen 318 WECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTEL----FRDSGKMW 393 (568)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHH----hcchHHHH
Confidence 555555544322 3444455555555432 222 2334555555555554433 333333232 23455555
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHH--HHHHHHHHHhCCCCCCHH-HHHHHH
Q 006614 375 NTVIKSLFESKA-PASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNR-VEK--AHLLLEEMEEKGFPPCPA-AYCSLI 449 (638)
Q Consensus 375 ~~ll~~~~~~~~-~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~--A~~~~~~~~~~~~~~~~~-~~~~li 449 (638)
..-+........ ..-....+|......-..+....|+... .|+ ... -..++......+ .++.. .-+.++
T Consensus 394 ~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl~s~~l 467 (568)
T KOG2396|consen 394 QLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVTLKSKYL 467 (568)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceeehhHHHH
Confidence 555544443322 2222233334444433333334444433 122 111 112233333443 33333 345677
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH---ccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc
Q 006614 450 NGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFG---KCGRLSDAVDLFNEMKKL-RCKPDVYTYNALMSGMVRA 525 (638)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~ 525 (638)
+.+.+.|-.++|...+..+... .+++...|..+|..-. .+| ...+..+++.|... | .|+..|.-.+.--...
T Consensus 468 ~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~ 543 (568)
T KOG2396|consen 468 DWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSDLWMDYMKEELPL 543 (568)
T ss_pred HHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChHHHHHHHHhhccC
Confidence 7778888888888888888876 6677888888776532 333 77788888887654 5 6777777777666688
Q ss_pred CChHHHHHHHHHHHH
Q 006614 526 GMIDDAYSLLRRMEE 540 (638)
Q Consensus 526 g~~~~A~~~~~~m~~ 540 (638)
|..+.+-.++.++.+
T Consensus 544 g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 544 GRPENCGQIYWRAMK 558 (568)
T ss_pred CCcccccHHHHHHHH
Confidence 888888887777665
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.57 E-value=7.9 Score=33.01 Aligned_cols=102 Identities=17% Similarity=0.282 Sum_probs=63.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 251 IRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 251 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
.+++..+.+.|++|+...+..+++.+.+.|++... ..+.+.++-+|.......+-.+. +....+.++--+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 35556666778888888888888888888876544 44445566566655554443222 2334445544444443
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 331 GCKPDIVLINNLINVLGRAGRLEDALKLFNKM 362 (638)
Q Consensus 331 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 362 (638)
= ...+..++..+...|++-+|.++.+..
T Consensus 88 L----~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 L----GTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred h----hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0 113455667777888888888887765
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.48 Score=28.33 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=19.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 584 SYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777888888888888888888854
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.84 E-value=26 Score=38.64 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVR 153 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (638)
-|..|+..|...|++++|.+++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 477888889999999999999988876
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.40 E-value=16 Score=34.58 Aligned_cols=203 Identities=14% Similarity=0.072 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH-----HHHHHHHHHHHHcCCCCc
Q 006614 406 SPFTYSILIDGFCKTNRV----EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRY-----EAANELFLELKEYCGCSS 476 (638)
Q Consensus 406 ~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-----~~A~~~~~~~~~~~~~~~ 476 (638)
|...-...+.++.+.|+. +++...+..+... .++..+-...+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444445555666666652 4566777666443 45666666666666655421 223333333222 245
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006614 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAG-MIDDAYSLLRRMEEDGCVPDINSHNIILN 555 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 555 (638)
..+-...+.++.+.++ ++|...+-.+.+ .+|...-...+.++.+.+ +...+...+..+... +|..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHH
Confidence 6666677788888877 456666666665 345555555555665543 245677777777753 57777778888
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhc
Q 006614 556 GLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGK 629 (638)
Q Consensus 556 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 629 (638)
++.+.|+. .|...+-+..+.+ + .....+.++...|.. +|...+.++.+. .||..+-...+++|.+
T Consensus 215 aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 215 GLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 89888884 6666666666542 2 234677889999985 788888888853 4588888888888764
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.28 E-value=30 Score=37.34 Aligned_cols=193 Identities=14% Similarity=0.062 Sum_probs=98.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC--CC------CHHHHHHHHHHHHccCCHHHHHHHHH--------HHHHcCCCCcHHHH
Q 006614 417 FCKTNRVEKAHLLLEEMEEKGF--PP------CPAAYCSLINGYGKAKRYEAANELFL--------ELKEYCGCSSARVY 480 (638)
Q Consensus 417 ~~~~g~~~~A~~~~~~~~~~~~--~~------~~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~ 480 (638)
.+-.+++.+|...++++.+..- ++ .+..+....-.+...|+.+.|...|. .....+...+..++
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il 450 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL 450 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH
Confidence 4457889999999998875421 11 12333334444556799999999997 44444444555444
Q ss_pred HHH----HHHHHccCCHHH--HHHHHHHHHhC-CCCC--CHHHHHHH-HHHHHHcC--ChHHHHHHHHHHHHCC---CCC
Q 006614 481 AVM----IKHFGKCGRLSD--AVDLFNEMKKL-RCKP--DVYTYNAL-MSGMVRAG--MIDDAYSLLRRMEEDG---CVP 545 (638)
Q Consensus 481 ~~l----i~~~~~~g~~~~--A~~~~~~m~~~-~~~p--~~~~~~~l-~~~~~~~g--~~~~A~~~~~~m~~~~---~~p 545 (638)
..+ |..+......++ +..+++.+... .-.| +..++..+ +.++.... ...++...+.+..+.- ...
T Consensus 451 a~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n 530 (608)
T PF10345_consen 451 AALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGN 530 (608)
T ss_pred HHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhcc
Confidence 332 112222223333 67777766542 1122 23333333 33333222 2234444444333211 111
Q ss_pred C---HHHHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCC--CHHHHHH-----HHHHHHccCCHHHHHHHHHHHHh
Q 006614 546 D---INSHNIILNGLAKSGGPKRAMEIFTKMQHS-EIKP--DAVSYNT-----ILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 546 ~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p--~~~~~~~-----l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
+ ..+++.+...+. .|+..+..+........ .-.| ....|.. +...+...|+.++|.....+...
T Consensus 531 ~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 531 SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 1 223333333344 67777766555553321 1112 3345633 33446778999999988877653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.22 E-value=28 Score=36.94 Aligned_cols=147 Identities=18% Similarity=0.182 Sum_probs=81.2
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHH--HH-HHccCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC
Q 006614 211 YEKIHELYNEMCNEGNCFPDTVTYSALI--SA-FGKLGRDISAIRLFDEMKE-------NGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g 280 (638)
...|.++++...+.|. ........++ .+ +....+.+.|+.+|+.+.+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~--~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH--SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHhhcc--hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 4567777777776654 2222222222 22 3355677777777777766 44 3335555666666532
Q ss_pred -----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----ccC
Q 006614 281 -----EVEKALGLVQEMKGKGCALTVYTYTELIKGLGR-AGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLG----RAG 350 (638)
Q Consensus 281 -----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g 350 (638)
+.+.|..++.+.-+.|.+ +...+-..+..... ..+...|.++|....+.|.. ..+-.+..+|. ...
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVER 378 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCC
Confidence 566777777777776643 44333332222222 24567788888777777643 22222222222 234
Q ss_pred CHHHHHHHHHHHHHCC
Q 006614 351 RLEDALKLFNKMEALQ 366 (638)
Q Consensus 351 ~~~~A~~~~~~~~~~~ 366 (638)
+...|..++.+..+.|
T Consensus 379 ~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG 394 (552)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 5677777777776655
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.08 E-value=2.1 Score=32.07 Aligned_cols=61 Identities=15% Similarity=0.273 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
-++.+-++.+...+..|++.+..+.++++-+-+++..|.++|+.++.+ +..+...|..++.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 367777888888888999999999999999999999999999988754 2224556666553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.03 E-value=31 Score=37.19 Aligned_cols=48 Identities=19% Similarity=0.125 Sum_probs=26.6
Q ss_pred HcCChHHHHHHHHHHHHCCC-CC-----CHHHHHHHHHH--HHhcCChHHHHHHHH
Q 006614 524 RAGMIDDAYSLLRRMEEDGC-VP-----DINSHNIILNG--LAKSGGPKRAMEIFT 571 (638)
Q Consensus 524 ~~g~~~~A~~~~~~m~~~~~-~p-----~~~~~~~l~~~--~~~~g~~~~A~~~~~ 571 (638)
-.+++..|...++.+.+..- .| ....+..++.| +...|+.+.|...|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 45777777777777765311 11 12222223333 345577888888886
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.01 E-value=4 Score=31.05 Aligned_cols=60 Identities=13% Similarity=0.289 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 143 VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+..+-+..+...+..|++.+..+.++++.+-+++..|.++|+-++.+ +.+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 66677777778888899999999999999999999999999988765 2222226666554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.4 Score=28.22 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHH
Q 006614 194 TANTYNSMILMLMQEGYYEKI 214 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A 214 (638)
+..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 445555555555555555544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.87 E-value=11 Score=31.76 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=9.1
Q ss_pred HHccCCHHHHHHHHHHHHh
Q 006614 487 FGKCGRLSDAVDLFNEMKK 505 (638)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~ 505 (638)
+...|++.+|.++|+++..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3344555555555555443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.79 E-value=9.3 Score=39.18 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
...+.++..+.++|..++|+++ .+|... -.....+.|+++.|.++..+. .+..-|..|..+
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~-------~s~~Kw~~Lg~~ 675 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEA-------NSEVKWRQLGDA 675 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhh-------cchHHHHHHHHH
Confidence 4556666667777776666654 122221 123345567777777665554 445567777777
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006614 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 320 (638)
..+.|++..|.+.|..... |..|+-.+...|+.+....+-....+.|.. | ...-+|...|+++++
T Consensus 676 al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 676 ALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEEC 740 (794)
T ss_pred HhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHHH
Confidence 7777777777777765544 335566666666666555555555555432 2 222345566777777
Q ss_pred HHHHHH
Q 006614 321 YGLFMN 326 (638)
Q Consensus 321 ~~~~~~ 326 (638)
.+++..
T Consensus 741 ~~lLi~ 746 (794)
T KOG0276|consen 741 LELLIS 746 (794)
T ss_pred HHHHHh
Confidence 666644
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.77 E-value=13 Score=32.41 Aligned_cols=91 Identities=11% Similarity=0.007 Sum_probs=46.0
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006614 167 VNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
...+..+|++++|..-++.....-.+ ....+-..|.+.....|++++|+..++.....+. .......-.+.+...
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w---~~~~~elrGDill~k 172 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW---AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH---HHHHHHHhhhHHHHc
Confidence 34455666666666666665543110 0111122344555666666666666665544221 222233334556666
Q ss_pred CChHHHHHHHHHHHHC
Q 006614 245 GRDISAIRLFDEMKEN 260 (638)
Q Consensus 245 g~~~~A~~~~~~m~~~ 260 (638)
|+-++|+.-|++..+.
T Consensus 173 g~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 173 GDKQEARAAYEKALES 188 (207)
T ss_pred CchHHHHHHHHHHHHc
Confidence 6666666666666554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.51 E-value=41 Score=37.90 Aligned_cols=81 Identities=12% Similarity=0.109 Sum_probs=48.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 006614 413 LIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA--AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKC 490 (638)
Q Consensus 413 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 490 (638)
.+.+|..+|+|.+|+.+..++... .+.. +-..|+.-+...++.-+|-++..+.... ....+..||+.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka 1039 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhH
Confidence 345566666666666666555321 1111 1245666677777777777777766543 33445566777
Q ss_pred CCHHHHHHHHHHHH
Q 006614 491 GRLSDAVDLFNEMK 504 (638)
Q Consensus 491 g~~~~A~~~~~~m~ 504 (638)
..+++|+++-....
T Consensus 1040 ~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHHHhcc
Confidence 77777777665443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.20 E-value=25 Score=37.84 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006614 200 SMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
.+|--+.+.|.+++|.++..+...... .....+...+..|+..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~--~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQ--KIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS---TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhc--chhHHHHHHHHHHHhC
Confidence 355666677777777777755544332 4445566666666554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.19 E-value=7.8 Score=33.72 Aligned_cols=93 Identities=13% Similarity=0.010 Sum_probs=64.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 006614 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGP-----SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
-+-+.++|++.+|..-|...+.. |++.+ ..|..-..++.+.+.++.|+.-..+..+.++. ...+...-..+|-
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHH
Confidence 45567888999999988888875 44433 23444455677888888888888777776433 3333344456777
Q ss_pred hcCCHhHHHHHHHHHHhCCC
Q 006614 207 QEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~ 226 (638)
+...+++|++-|.++....+
T Consensus 180 k~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDP 199 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCc
Confidence 78888888888888887654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.81 E-value=2 Score=39.92 Aligned_cols=106 Identities=13% Similarity=0.100 Sum_probs=69.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCH
Q 006614 119 RNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRST---CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTA 195 (638)
Q Consensus 119 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 195 (638)
.|.+++..+-...+..-....+++++...+-.+.... ..++.. -..+++.+.+ -++++++.+...=...|+.||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 4556666666666666666677777777776654421 111111 1223333333 3667888888887888888888
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
.+++.+++.+.+.+++.+|..+.-.|.....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888777766544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.64 E-value=8.1 Score=36.16 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=58.5
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006614 473 GCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLR---CKPD--VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDI 547 (638)
Q Consensus 473 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 547 (638)
.+.+..+...++..-....+++++...+-+++..- ..|+ .++|..+ +-.-+.++++.++..=++.|+-||.
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccccch
Confidence 34444455555555555566777777766665431 1111 2222222 2223556777777776777777777
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006614 548 NSHNIILNGLAKSGGPKRAMEIFTKMQHS 576 (638)
Q Consensus 548 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 576 (638)
.+++.+++.+.+.+++.+|.++...|+..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777777777776666543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.49 E-value=14 Score=31.15 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=9.3
Q ss_pred HHhcCCHhHHHHHHHHHHh
Q 006614 205 LMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~ 223 (638)
++..|++.+|+.+|+++..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444555555555555443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.81 E-value=25 Score=33.32 Aligned_cols=217 Identities=16% Similarity=0.120 Sum_probs=110.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH----HHHHHHHHHhhhCCCCCCHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMV----NKALSIFYQIKSRKCKPTANTYN 199 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~~ 199 (638)
+..+....+.++...|. +++...+..+.. .+++..-...+.++++.|+. .++...+..+... .++...-.
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 44455555555555554 233333333333 34556666666666666653 3566666655333 34555555
Q ss_pred HHHHHHHhcCC-----HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006614 200 SMILMLMQEGY-----YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274 (638)
Q Consensus 200 ~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 274 (638)
..+.++...+. ..++.+.+...... ++...-...+.++.+.|+ .+|...+-.+.+. +|..+-...+.
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D----~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAFD----KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhhC----CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 55555554432 12334444333332 344555566666666665 4555655555542 34455555555
Q ss_pred HHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006614 275 IYFKLG-EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLE 353 (638)
Q Consensus 275 ~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 353 (638)
++.+.+ ....+...+..+... ++...-...+.++.+.|+ ..|...+-...+.+ + .....+.++...|+.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 555442 133455555555532 355556666666666666 34555555554432 2 223455556666663
Q ss_pred HHHHHHHHHHH
Q 006614 354 DALKLFNKMEA 364 (638)
Q Consensus 354 ~A~~~~~~~~~ 364 (638)
+|...+..+.+
T Consensus 252 ~a~p~L~~l~~ 262 (280)
T PRK09687 252 TLLPVLDTLLY 262 (280)
T ss_pred hHHHHHHHHHh
Confidence 45555555544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.71 E-value=1.5 Score=25.50 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+|..+...|...|++++|+..|++.++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 356666666777777777777777666644
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.68 E-value=18 Score=31.52 Aligned_cols=88 Identities=11% Similarity=0.097 Sum_probs=42.4
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHH-----HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYS-----ALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
...+...|++++|...++..... |....+. .|.+.....|.+|+|+..++...+.++ .......-.+.+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDil 169 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHH
Confidence 34556666677776666665542 2222222 233444455555555555555443321 112222233445
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 006614 277 FKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~ 295 (638)
...|+-++|..-|++..+.
T Consensus 170 l~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 170 LAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHcCchHHHHHHHHHHHHc
Confidence 5555555555555555544
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.30 E-value=0.3 Score=40.93 Aligned_cols=129 Identities=14% Similarity=0.151 Sum_probs=77.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006614 483 MIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGG 562 (638)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 562 (638)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++... ..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence 456666777777777788877766545567777778888888777777777766111 1222345666677777
Q ss_pred hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCc
Q 006614 563 PKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDED 633 (638)
Q Consensus 563 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 633 (638)
+++|..++.++-... ..+..+...++++.|.+++.+ .++...|..+++.|...++.
T Consensus 86 ~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCcc
Confidence 777777766653211 011112344555555533332 34577888888888877654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.81 E-value=1 Score=26.53 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=11.8
Q ss_pred CCHHHHHHHHHHHHccCChHHHH
Q 006614 229 PDTVTYSALISAFGKLGRDISAI 251 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~~g~~~~A~ 251 (638)
.+...|+.+...+...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455555555555555555543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.61 E-value=2 Score=24.86 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.|..+...+.+.|++++|++.|++..+..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666666666543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.52 E-value=35 Score=33.62 Aligned_cols=66 Identities=20% Similarity=0.181 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006614 264 PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL---TVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
....+|..++..+.+.|.++.|...+..+...+... ++.....-++.+-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355678888888899999999998888887754211 233444455667778888888888888777
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.16 E-value=13 Score=38.31 Aligned_cols=132 Identities=14% Similarity=0.130 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
.-+.++.-+-++|..++|++ +.+|+.-.. ....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~---------~s~D~d~rF---elal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALE---------LSTDPDQRF---ELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhh---------cCCChhhhh---hhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 45566666777777766654 334443322 34467889999988766543 6778999999999
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006614 207 QEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKAL 286 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 286 (638)
+.|++..|.+-|..... |..|+-.+...|+.+....+-....+.|. .|....+|...|+++++.
T Consensus 678 ~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECL 741 (794)
T ss_pred hcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHH
Confidence 99999999999988755 45667777777877665555555565552 234455677899999999
Q ss_pred HHHHHH
Q 006614 287 GLVQEM 292 (638)
Q Consensus 287 ~~~~~m 292 (638)
+++.+-
T Consensus 742 ~lLi~t 747 (794)
T KOG0276|consen 742 ELLIST 747 (794)
T ss_pred HHHHhc
Confidence 888654
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.97 E-value=20 Score=31.53 Aligned_cols=73 Identities=5% Similarity=0.042 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHhcCCHhHHH
Q 006614 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR---KCKPTANTYNSMILMLMQEGYYEKIH 215 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 215 (638)
++|.+.|-.+...+.--++.....++..|. ..+.++|+.++.+..+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 566777777766666667777777776666 45788888888887654 33678888999999999999988875
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.90 E-value=97 Score=38.14 Aligned_cols=320 Identities=10% Similarity=0.021 Sum_probs=167.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 006614 130 ALIRCLDETRMIGVMWKSIQDMVRST--CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
.+..+-.+.+.+.+|...++.-.... .......+..+...|+..++++....+...-.. .|+.. .-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~sl~---~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPSLY---QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---CccHH---HHHHHHHh
Confidence 45556667888888888887741110 011223344455588888888888887764221 12222 23444567
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTT-LVSIYFKLGEVEKAL 286 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~~A~ 286 (638)
.|++..|..-|+.+...++ +...+++.+++.....|.++..+-..+-...+ ..+....+++ =+.+-.+.++++...
T Consensus 1462 ~g~~~da~~Cye~~~q~~p--~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDP--DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hccHHHHHHHHHHhhcCCC--ccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 8999999999999988775 55778888888888888887777765555443 2233333433 234446777777776
Q ss_pred HHHHHHHhCCCCCCHHHHHHH--HHHHHhc--CCHHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHHccCCHH
Q 006614 287 GLVQEMKGKGCALTVYTYTEL--IKGLGRA--GRVEDAYGLFMNMLKEGCKP---------DIVLINNLINVLGRAGRLE 353 (638)
Q Consensus 287 ~~~~~m~~~~~~~~~~~~~~l--i~~~~~~--g~~~~A~~~~~~~~~~~~~p---------~~~~~~~li~~~~~~g~~~ 353 (638)
..+. .. +..+|... +....+. .+.-.-.+..+.+.+.-+.| -...|..++....-.
T Consensus 1539 ~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~---- 1607 (2382)
T KOG0890|consen 1539 SYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL---- 1607 (2382)
T ss_pred hhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----
Confidence 6654 22 22223222 2222221 12111112333332221110 011223332222111
Q ss_pred HHHHHHHHHHHC----CCCCChhhHHHHHHH---HHhcCChHHHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHH
Q 006614 354 DALKLFNKMEAL----QCKPNVVTYNTVIKS---LFESKAPASEASAWFEKMKAN-GVL-PSPFTYSILIDGFCKTNRVE 424 (638)
Q Consensus 354 ~A~~~~~~~~~~----~~~p~~~~~~~ll~~---~~~~~~~~~~~~~~~~~m~~~-~~~-~~~~~~~~li~~~~~~g~~~ 424 (638)
+-....+..... ...-+...|...+.. ..+...+--+.++.+.....+ +.. --..+|....+.....|+++
T Consensus 1608 el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1608 ELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred HHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 111111111110 011112222222221 122111111111111111111 111 12467778888888899999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 006614 425 KAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYC 472 (638)
Q Consensus 425 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 472 (638)
.|...+-+..+.+ -+..+.-.+..+...|+...|..++++..+..
T Consensus 1688 ~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 9988877777665 34566667778889999999999999988653
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.74 E-value=1.4 Score=25.61 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=16.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 584 SYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.|..+..++.+.|++++|.+.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666666666666666666653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.35 E-value=1.5 Score=25.56 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=15.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 584 SYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
+|..+..++...|++++|+..+++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555666666666666666666553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.22 E-value=2.3 Score=26.06 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666667777777777776666543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.17 E-value=14 Score=32.52 Aligned_cols=81 Identities=19% Similarity=0.058 Sum_probs=62.3
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHccCC
Q 006614 169 ILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNC--FPDTVTYSALISAFGKLGR 246 (638)
Q Consensus 169 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 246 (638)
.+.+.|+ +.|.+.|-++...+.--++.....+...|. ..+.++++.++....+.... .+|+..+.+|+..+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3555554 778899999888766667777666666665 77899999999888754321 3789999999999999999
Q ss_pred hHHHH
Q 006614 247 DISAI 251 (638)
Q Consensus 247 ~~~A~ 251 (638)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 98874
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=85.10 E-value=57 Score=34.79 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhhCC----------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006614 106 NVKIQFFKWAGRRR----------------NFEHNSTTYMALIRCLDETRMIGVMWKSIQD 150 (638)
Q Consensus 106 ~~a~~~f~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 150 (638)
.....+++|+-+.. ...+++.-|+ .+..+.-.|.++.|.+++..
T Consensus 114 ~v~~~Ll~WvNr~~~~~~~~~~~~vl~~~~p~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 114 PVPEQLLDWVNRFHFPPSEELAEEVLSSEPPYEHDPDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHHHHHHHHTTS--SHHHHHTTSCSS-HSCSGSHHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred chHHHHHHHHHHhCCCCchhHHHHHhccCCCCccchhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 45777888883222 2334578887 67788888999999998853
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.99 E-value=33 Score=31.99 Aligned_cols=71 Identities=11% Similarity=0.175 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHhHH
Q 006614 550 HNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA-----KGFEYDQITYS 621 (638)
Q Consensus 550 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 621 (638)
++.....|..+|.+.+|.++.++....+ +.+...|..++..+...|+--+|.+-++++.+ .|+..|..+++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 3445566777777777777777776542 23555666777777777776666665555532 36665555443
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=84.41 E-value=61 Score=34.57 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=0.0
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 006614 593 SRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 593 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
.+.|++.+|.+.+-.+.+.++-|...-...|.++.
T Consensus 506 ~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~l 540 (566)
T PF07575_consen 506 YDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDAL 540 (566)
T ss_dssp -----------------------------------
T ss_pred HhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Confidence 35588888888888888777778776655555543
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.28 E-value=30 Score=30.79 Aligned_cols=177 Identities=15% Similarity=0.039 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 006614 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRL 253 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 253 (638)
|-..-|.--|.+.....++ -+..||.+.--+...|+++.|.+.|+...+.++. ...+...-.-++.--|++.-|.+-
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~--y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT--YNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc--chHHHhccceeeeecCchHhhHHH
Confidence 3333444444444444222 4567899998999999999999999999987652 222222222233356899999888
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHc
Q 006614 254 FDEMKENG-LQPTAKIYTTLVSIYFKLGEVEKALGLV-QEMKGKGCALTVYTYTELIKG-LGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 254 ~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~ 330 (638)
|....+.. -.|-...|-.++. ..-++.+|..-+ +...+. |..-|...|-. |...=..+ .+++.++..
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~ 225 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEE---TLMERLKAD 225 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHH---HHHHHHHhh
Confidence 77776653 1222233333332 344566665444 444333 43444333322 22221112 233333322
Q ss_pred CCCCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 331 GCKPD-------IVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 331 ~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
-.-+ ..||--+...+...|+.++|..+|+-...
T Consensus 226 -a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 226 -ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1111 35778888899999999999999998776
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.85 E-value=2.7 Score=25.74 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 583 VSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888887664
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=83.85 E-value=50 Score=33.12 Aligned_cols=88 Identities=9% Similarity=0.005 Sum_probs=43.9
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChH
Q 006614 169 ILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI 248 (638)
Q Consensus 169 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 248 (638)
.+...|+++.+...+...... +.....+..++++...+.|++++|...-+.|+.... .+...........-..|-+|
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ei--e~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEI--EDEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcccc--CChhheeeecccHHHHhHHH
Confidence 344556666666655444332 112334455556666666666666666666655443 23333333233333445555
Q ss_pred HHHHHHHHHHH
Q 006614 249 SAIRLFDEMKE 259 (638)
Q Consensus 249 ~A~~~~~~m~~ 259 (638)
++.-.++++..
T Consensus 409 ~~~~~wk~~~~ 419 (831)
T PRK15180 409 KSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHhc
Confidence 56555555544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.80 E-value=6.1 Score=37.35 Aligned_cols=54 Identities=11% Similarity=0.061 Sum_probs=31.2
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006614 168 NILGKAKMVNKALSIFYQIKSRKCKP-TANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
+-|.++|.+++|+..|..-... .| |++++..-..+|.+..+|..|..-.+..+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4455666666666666555443 22 566666666666666666655555555444
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=83.58 E-value=24 Score=30.35 Aligned_cols=42 Identities=24% Similarity=0.443 Sum_probs=20.6
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006614 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
|++|.+.|++..... |+...|+.-+.... +|-+++.++.+.+
T Consensus 96 F~kA~~~FqkAv~~~---P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVDED---PNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHH----TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcC---CCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 445555555555443 56666655555442 2555555555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.24 E-value=56 Score=33.16 Aligned_cols=99 Identities=10% Similarity=0.025 Sum_probs=68.5
Q ss_pred CCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHhhh-CCCCCCHHH
Q 006614 509 KPDVYTY-NALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA--KSGGPKRAMEIFTKMQH-SEIKPDAVS 584 (638)
Q Consensus 509 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~-~~~~p~~~~ 584 (638)
.|+..|+ +.++..+.+.|-..+|...+..+... .+|+...|..++..=. ..-+..-+..+++.|.. .| .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 4666554 45677777888888999999888876 3567777777765422 12237778888888876 45 56777
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 585 YNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
|--.+.--...|..+.+-.++.+..+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 77766666677887777777666554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.95 E-value=69 Score=34.03 Aligned_cols=117 Identities=17% Similarity=0.171 Sum_probs=56.2
Q ss_pred cCCCHHHHHHHHHHhhh-------CCCCCCHHHHHHHHHHHHhcC-----CHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006614 172 KAKMVNKALSIFYQIKS-------RKCKPTANTYNSMILMLMQEG-----YYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
...+.+.|...|....+ .| ......-+..+|.+.. +.+.|+.+|.+....+. |+...+...+.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~ 335 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLY 335 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHH
Confidence 44566666666666655 33 2234444555555432 44556666666666554 45444433333
Q ss_pred HHHc-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCC
Q 006614 240 AFGK-LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYF----KLGEVEKALGLVQEMKGKG 296 (638)
Q Consensus 240 ~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~ 296 (638)
.... ..+...|.++|....+.|. ...+-.+..+|. -..+.+.|..++.+..+.|
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 3222 2345566666666665552 222222222221 1224555555555555555
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.73 E-value=9.6 Score=30.28 Aligned_cols=62 Identities=13% Similarity=0.243 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 006614 565 RAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 565 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
+..+-++.+....+.|++.....-+++|.+.+++..|.++++-.+.+ +.+....|..+++-+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~el 128 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKEL 128 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHHH
Confidence 34455555666677788888888888888888888888888777654 344444566666543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.58 E-value=27 Score=29.03 Aligned_cols=19 Identities=21% Similarity=0.550 Sum_probs=9.1
Q ss_pred HHhcCCHhHHHHHHHHHHh
Q 006614 205 LMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~ 223 (638)
++..|++++|+.+|+++.+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 3444555555555554444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.47 E-value=13 Score=33.00 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=26.0
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEM 257 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 257 (638)
+..+.+.++..+|+...++-.+..+ .|......++..+|-.|++++|..-++..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakP--tda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKP--TDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCC--ccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3444455555555555555444443 34444444555555555555554444433
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.35 E-value=13 Score=32.95 Aligned_cols=76 Identities=16% Similarity=0.032 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHH
Q 006614 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRK--CKPTANTYNSMILM 204 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~ 204 (638)
.+.-++.+.+.+..++++...++-++. .+.+...-..++..++-.|++++|..-++-..+.. ..+-...|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka-kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA-KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc-CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 445567778888888888888887775 35566677778888888888888888777766552 23345566666654
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.06 E-value=47 Score=33.50 Aligned_cols=37 Identities=5% Similarity=-0.118 Sum_probs=23.4
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006614 521 GMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA 558 (638)
Q Consensus 521 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 558 (638)
.|...|++-.|.+.|.+.... +..++..|-.|..+|.
T Consensus 344 ~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 455667777777777766654 3446666666666654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 96.4 bits (238), Expect = 9e-21
Identities = 22/159 (13%), Positives = 56/159 (35%), Gaps = 4/159 (2%)
Query: 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSL 534
A +++ L + + + A + + A+ L
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 535 L---RRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGC 591
L + + ++ +N ++ G A+ G K + + ++ + + PD +SY L C
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 592 LSRAGMFEEAA-RLMKDMNAKGFEYDQITYSSILEAVGK 629
+ R R ++ M+ +G + + + +L +
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 90.6 bits (223), Expect = 5e-19
Identities = 35/296 (11%), Positives = 77/296 (26%), Gaps = 46/296 (15%)
Query: 355 ALKLFNKMEALQCKP-------NVVTYNTVIKSLFESKAPASE------ASAWFEKMKAN 401
A L Q + + + K+L A + +
Sbjct: 27 AKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQA 86
Query: 402 GVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAA 461
P + L+ ++ + + + + A
Sbjct: 87 PESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLA 146
Query: 462 NELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSG 521
+ L + ++ R + YNA+M G
Sbjct: 147 HHLLVVHHG--------------------------------QRQKRKLLTLDMYNAVMLG 174
Query: 522 MVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAME-IFTKMQHSEIKP 580
R G + +L +++ G PD+ S+ L + + +E +M +K
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL 234
Query: 581 DAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRNP 636
A+ +L RA + + ++ + + S +L V D +
Sbjct: 235 QALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSY 290
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 87.6 bits (215), Expect = 6e-18
Identities = 27/218 (12%), Positives = 57/218 (26%), Gaps = 5/218 (2%)
Query: 229 PDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGL 288
P + L+ + + L + ++ A L
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 289 VQEMKG---KGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINV 345
+ G K LT+ Y ++ G R G ++ + + G PD++ +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 346 LGRAGR-LEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVL 404
+GR + + +M K + ++ S + L
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL-SEEDRATVLKAVHKVKPTFSLPPQL 268
Query: 405 PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCP 442
P P S L+ + L ++
Sbjct: 269 PPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 86.4 bits (212), Expect = 1e-17
Identities = 25/225 (11%), Positives = 68/225 (30%), Gaps = 3/225 (1%)
Query: 253 LFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLG 312
L D ++ P + L+ ++ + + K
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 313 RAGRVEDAYGLFM---NMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKP 369
++ A+ L + ++ + + N ++ R G ++ + + ++ P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 370 NVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLL 429
++++Y ++ + A E+M G+ ++L+ + ++ H +
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 430 LEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474
P P L+ + +L L LK
Sbjct: 259 KPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCL 303
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 70.2 bits (170), Expect = 1e-12
Identities = 37/304 (12%), Positives = 89/304 (29%), Gaps = 15/304 (4%)
Query: 104 EINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVL 163
+ K+Q +G + L+ +M G + + S L
Sbjct: 43 RLKAKLQMPFQSGEFKALTRRLQVEPRLL----SKQMAGCLEDCTRQAPES---PWEEQL 95
Query: 164 SEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223
+ ++ ++ + Q + + + H L
Sbjct: 96 ARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHG 155
Query: 224 --EGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE 281
+ Y+A++ + + G + + +K+ GL P Y + + +
Sbjct: 156 QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215
Query: 282 VEKALG-LVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLIN 340
+ +++M +G L L+ RA ++ + + P V +
Sbjct: 216 DAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTS 275
Query: 341 NLINVLGRAGRLEDALKLFNKMEALQCKPNV-----VTYNTVIKSLFESKAPASEASAWF 395
L+ + KL ++ LQC + + S+ + P+ E
Sbjct: 276 KLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHAR 335
Query: 396 EKMK 399
+ +K
Sbjct: 336 KTLK 339
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 1e-11
Identities = 99/695 (14%), Positives = 206/695 (29%), Gaps = 237/695 (34%)
Query: 23 IKQTENEIVHMFQLSGPIDEMRNFPVSKKFARKDT--------SARKLDERFIRILKIFK 74
+ +I+ +F+ F F KD S ++D I+
Sbjct: 14 HQYQYKDILSVFE--------DAF--VDNFDCKDVQDMPKSILSKEEIDH----IIMS-- 57
Query: 75 WGPDAEKALEVL-------KMRVDHRLVHQVLNIDVEINVKIQFFKW------------A 115
DA L + + + V +VL I+ +K+ +
Sbjct: 58 --KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN---------YKFLMSPIKTEQRQPS 106
Query: 116 GRRRNFE------HNST------------TYMALIRCLDETR---------MIGVMWKSI 148
R + +N Y+ L + L E R ++G
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG------ 160
Query: 149 QDMVRSTCVMGPSVL-SEIVNILG-KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLM 206
G + + ++ + KM K IF+ + + C ++ M
Sbjct: 161 ---------SGKTWVALDVCLSYKVQCKMDFK---IFW-LNLKNCNSPET------VLEM 201
Query: 207 QEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA 266
+ +I + + + + S +L R + L + EN L
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIH-----SIQAEL-RRL----LKSKPYENCL---- 247
Query: 267 KIYTTLVSIYFKLGEVE-----KALGLVQEMKGKGC-------------ALTVYTYTELI 308
LV L V+ A L C L+ T T +
Sbjct: 248 -----LV-----LLNVQNAKAWNAFNL-------SCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 309 KGLGRAGRVED-AYGLFMNMLKEGCKPD-----IVLINNL-INVLGRAGRLEDALKLFNK 361
D L + L C+P ++ N ++++ + D L ++
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYL--DCRPQDLPREVLTTNPRRLSIIAE--SIRDGLATWDN 346
Query: 362 MEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLP-----SPFTYSIL--- 413
+ + C T+I+S PA E F+++ V P S++
Sbjct: 347 WKHVNCD----KLTTIIESSLNVLEPA-EYRKMFDRL---SVFPPSAHIPTILLSLIWFD 398
Query: 414 ---------IDGFCKTNRVEKA--------HLLLEEMEEKGFPPCPAAYCSLINGYGKAK 456
++ K + VEK + E++ K A + S+++ Y K
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK-LENEYALHRSIVDHYNIPK 457
Query: 457 RYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEM--------KKLRC 508
+++ + + L +Y Y+ + H + + LF + +K+R
Sbjct: 458 TFDSDDLIPPYLDQY-------FYSHIGHHLKNIEH-PERMTLFRMVFLDFRFLEQKIR- 508
Query: 509 KPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAME 568
D +NA +++ L + + + + ++N + + E
Sbjct: 509 -HDSTAWNA------SGSILNTLQQL--KFYKPYICDNDPKYERLVNAILDF--LPKIEE 557
Query: 569 IFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAAR 603
+++++ A+ +FEEA +
Sbjct: 558 NLICSKYTDLLRIALMAED-------EAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 6e-07
Identities = 64/449 (14%), Positives = 122/449 (27%), Gaps = 130/449 (28%)
Query: 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTT--L 272
H + E + D + S AF + + D K I + +
Sbjct: 5 HHMDFETGEHQYQYKDIL--SVFEDAFVD---NFDCKDVQDMPKS--------ILSKEEI 51
Query: 273 VSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC 332
I V L L + K V + E + Y M+ +K
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQ-EEMVQKFVE--------EVLRINYKFLMSPIKTEQ 102
Query: 333 K---PDIVLINNLINVLGRAG---------RLEDALKLFNKMEALQCKPNVVTY------ 374
+ + + L RL+ LKL + L+ NV+
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 375 NTVIKSLFESKAPASEA--SAWFEKMKANGVLPSPFTYSILIDGFCKTNR--VEKAHLLL 430
T + A + S + + F ++ C + +E LL
Sbjct: 163 KTWV---------ALDVCLSYKVQCKMDFKI----FWLNL---KNCNSPETVLEMLQKLL 206
Query: 431 EEMEEKGFPPCPAAYCSLINGYGKAK-RYEAANE---LFLELKEYCGCSSARVYAVMIKH 486
+++ + S + K R + L+ K Y C +++
Sbjct: 207 YQIDPN--------WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-------LLV-- 249
Query: 487 FGKCGRLSD-----AVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541
L + A + FN L CK + T R + D S
Sbjct: 250 ------LLNVQNAKAWNAFN----LSCKILLTT---------RFKQVTDFLSAATTTH-- 288
Query: 542 GCVPDINSHNIILNGLAKSGGPKRAMEIFTK---MQHSEIKPDAVSYNTILGCLSRAGMF 598
I L+ + + P + K + ++ + ++ N LS +
Sbjct: 289 ----------ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LS---II 333
Query: 599 EEAARLMKDMNAKGFEYDQITYSSILEAV 627
A ++D A + + + +
Sbjct: 334 ---AESIRDGLATWDNWKHVNCDKLTTII 359
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 5e-10
Identities = 45/384 (11%), Positives = 94/384 (24%), Gaps = 69/384 (17%)
Query: 230 DTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLV 289
V ++ L + + + +GL P V ++AL V
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLC--QAHGLTPQ------QVVAIASHDGGKQALETV 122
Query: 290 QEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPD-IVLINNLINVLGR 348
Q L V A+GL P+ +V I +
Sbjct: 123 QR------LLPVLC---------------QAHGL---------TPEQVVAIASHDGGKQA 152
Query: 349 AGRLEDALKLFNKMEALQCKPN-VVTYNTVIKSLFESKAPASEASAWFEKMKANGVLP-S 406
++ L + + A P VV + + +A+G+ P
Sbjct: 153 LETVQALLPVLCQ--AHGLTPEQVVAIASNGGGKQALETVQ-RLLPVLC--QAHGLTPQQ 207
Query: 407 PFTYSILIDGFCKTNRVEKA-HLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELF 465
+ G V++ +L + P A S G + + +
Sbjct: 208 VVAIASNGGGKQALETVQRLLPVLCQAHGLT--PQQVVAIASNGGGKQALETVQRLLPVL 265
Query: 466 ---LELK-EYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD-VYTYNALMS 520
L + A + + + + P V +
Sbjct: 266 CQAHGLTPQQ-----VVAIASNSGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASNGG 318
Query: 521 GMVRAGMIDDAYSLLRR-MEEDGCVPD-INSHNIILNGLAKSGGPKRAMEIFTKMQHSEI 578
G + +L + P + + G +R + + + +
Sbjct: 319 GKQALETVQRLLPVLCQAHGLT---PQQVVAIASHDGGKQALETVQRLLPVLCQAH--GL 373
Query: 579 KPD-AVSYNTILGCLSRAGMFEEA 601
P+ V+ + G +
Sbjct: 374 TPEQVVAIASNGGGKQALETVQRL 397
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 39/322 (12%), Positives = 76/322 (23%), Gaps = 47/322 (14%)
Query: 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNC 227
+ V L + Q + S +++ + +
Sbjct: 148 GGKQALETVQALLPVLCQAHGLTPEQ-VVAIASNGGGKQALETVQRLLPVLCQAHG---L 203
Query: 228 FPD-TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKAL 286
P V ++ L + + + +GL P V G ++AL
Sbjct: 204 TPQQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQ------QVVAIASNGGGKQAL 255
Query: 287 GLVQEMKGKGCALTVYT--------YTELIKGLGRA----GRVEDAYGLFMNMLKEGCKP 334
VQ L V I V+ + P
Sbjct: 256 ETVQR------LLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHG--LTP 307
Query: 335 D-IVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN-VVTYNTVIKSLFESKAPASEAS 392
+V I + ++ L + + A P VV + +
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIASHDGGKQALETVQ-RLL 364
Query: 393 AWFEKMKANGVLP-SPFTYSILIDGFCKTNRVEKAHLLLEE-MEEKGFPPCPAAYCSLIN 450
+ A+G+ P + G V++ +L + P A S
Sbjct: 365 PVLCQ--AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT--PEQVVAIASHDG 420
Query: 451 GYGKAKRYEAANELF---LELK 469
G + + + L
Sbjct: 421 GKQALETVQRLLPVLCQAHGLT 442
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 27/226 (11%), Positives = 55/226 (24%), Gaps = 43/226 (19%)
Query: 168 NILGKAKMVNKALSIFYQIKSRKCKPT-ANTYNSMILMLMQEGYYEKIHELYN---EMCN 223
+ V + L + ++ P S +++ + +
Sbjct: 250 GGKQALETVQRLLPVL--CQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP 307
Query: 224 EGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283
+ V ++ L + + + +GL P V +
Sbjct: 308 Q-----QVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQ------QVVAIASHDGGK 354
Query: 284 KALGLVQEMKGKGCALTVYT--------YTELIKGLGRA----GRVEDAYGLFMNMLKEG 331
+AL VQ L V I G V+ +
Sbjct: 355 QALETVQR------LLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHG-- 406
Query: 332 CKPD-IVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN-VVTYN 375
P+ +V I + ++ L + + A P VV
Sbjct: 407 LTPEQVVAIASHDGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIA 450
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 31/202 (15%), Positives = 65/202 (32%), Gaps = 14/202 (6%)
Query: 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYN---EMCNEGNCFPD 230
+ +AL I+ + T + + +Y+K E+ +
Sbjct: 162 YHILQALDIYQNHPLYSIR-TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220
Query: 231 T-VTYSALISAFGKLGRDISAIRLFDE----MKENGLQPTAKIYTTLVSIYFKLGEVEKA 285
++ + +++ + G D A+ F + +E K+ L K G+ +KA
Sbjct: 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKA 280
Query: 286 LGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNML----KEGCKPDIV-LIN 340
++E A + Y EL L + ++L K+ I
Sbjct: 281 FQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACAR 340
Query: 341 NLINVLGRAGRLEDALKLFNKM 362
+ V + E A + K+
Sbjct: 341 SAAAVFESSCHFEQAAAFYRKV 362
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 50/385 (12%), Positives = 106/385 (27%), Gaps = 50/385 (12%)
Query: 245 GRDISAIRLFD---EMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV 301
G ++ + + Q A + +F +A+ Q A+ +
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQY------AIEL 54
Query: 302 Y-TYTELIKGLGRA----GRVEDAYGLFMNMLKEGCKPDIVLI-NNLINVLGRAGRLEDA 355
+ G +E L+ KPD + G DA
Sbjct: 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALE--IKPDHSKALLRRASANESLGNFTDA 112
Query: 356 LKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSP-------- 407
+ + + + ++L + + ++ + + VLPS
Sbjct: 113 MFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172
Query: 408 -FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKA-KRYEAANELF 465
F + + ++ + A+ LL + ++ + Y + K+ Y +
Sbjct: 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN 232
Query: 466 ---LELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGM 522
L+E +A L DA L + + P +Y L +
Sbjct: 233 TVDDPLREN----AALALCYTGIFHFLKNNLLDAQVLLQ--ESINLHPTPNSYIFLALTL 286
Query: 523 VRAGMIDDAYSLLRRMEEDGCVPDINSHNI-ILNGLA----KSGGPKRAMEIFTKMQHSE 577
+ + ++ + +N K A E F K
Sbjct: 287 ADKENSQEFFKFFQKAVD------LNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA--QS 338
Query: 578 IKPD-AVSYNTILGCLSRAGMFEEA 601
+ P+ Y + L + G F E+
Sbjct: 339 LNPENVYPYIQLACLLYKQGKFTES 363
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 44/286 (15%), Positives = 77/286 (26%), Gaps = 47/286 (16%)
Query: 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLF 254
A + + L E N P +Y L + F
Sbjct: 243 ALALCYTGIFHFLKNNLLDAQVLLQESIN---LHPTPNSYIFLALTLADKENSQEFFKFF 299
Query: 255 DEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT-----VYTYTELI 308
+ + L P Y +YF L + + A Q+ A + VY Y +L
Sbjct: 300 QKAVD--LNPEYPPTYYHRGQMYFILQDYKNAKEDFQK------AQSLNPENVYPYIQLA 351
Query: 309 KGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI-NNLINVLGRAGRLEDALKLFNKMEALQC 367
L + G+ ++ F + P + + +L G + A+K ++ A +
Sbjct: 352 CLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDI--AKRL 407
Query: 368 KPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAH 427
+ + G S + A
Sbjct: 408 EEV-------------------QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI 448
Query: 428 LLLEE-MEEKGFPPCPAAYCSLINGYGKAKRYEAANELF---LELK 469
LL + E P A L + ++ + A ELF L
Sbjct: 449 KLLTKACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 6e-08
Identities = 30/213 (14%), Positives = 66/213 (30%), Gaps = 27/213 (12%)
Query: 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYN---EMCNE-GNCFP 229
+A I+ + ++ + ++ + YE + M
Sbjct: 164 DYARQAYEIYKEHEAYNIR-LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222
Query: 230 DTVTYSALISAFGKLGRDISAIRLFDE----MKENGLQP-TAKIYTTLVSIYFKLGEVEK 284
T + + AI F +E+ + P + Y + I++KLG+++K
Sbjct: 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDK 282
Query: 285 ALGLVQEMKGKGCALTVYTYTE---------LIKGLGRAGRVEDAYGLFMNMLKE-GCKP 334
A + + +K L +G E+A F + L+
Sbjct: 283 AHEYHSK------GMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYA 336
Query: 335 DIVLI-NNLINVLGRAGRLEDALKLFNKMEALQ 366
D+ ++ + A F K+E ++
Sbjct: 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 5e-07
Identities = 36/236 (15%), Positives = 64/236 (27%), Gaps = 14/236 (5%)
Query: 237 LISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKAL-GLVQEMKGK 295
L A+ + + LQ + + L +EM
Sbjct: 40 LYRAYLAQRKYGVVLDEIKPSSAPELQA----VRMFAEYLASHSRRDAIVAELDREMSRS 95
Query: 296 GCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDA 355
+ A + + + +L + RL+ A
Sbjct: 96 VDVTNTTFLLMAASIYFYDQNPDAALRTLHQGD------SLECMAMTVQILLKLDRLDLA 149
Query: 356 LKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILID 415
K KM+ + T SL +A F++M A+ P+ +
Sbjct: 150 RKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEM-ADKCSPTLLLLNGQAA 208
Query: 416 GFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKA-KRYEAANELFLELKE 470
R E A +L+E +K P +L+ K E N +LK+
Sbjct: 209 CHMAQGRWEAAEGVLQEALDK-DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 1e-05
Identities = 30/204 (14%), Positives = 67/204 (32%), Gaps = 12/204 (5%)
Query: 169 ILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI-LMLMQEGYYEKIHELYNEMCNEGNC 227
L + ++ + SR T T+ M + + + ++ +
Sbjct: 74 YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS---- 129
Query: 228 FPDTVTYSALISAFGKLGRDISAIRLFDEMKE-NGLQPTAKIYTTLVSIYFKLGEVEKAL 286
+ + KL R A + +M++ + ++ T VS+ +++ A
Sbjct: 130 ---LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAY 186
Query: 287 GLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVL 346
+ QEM K C+ T+ GR E A G+ L + + NL+ +
Sbjct: 187 YIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLINLVVLS 244
Query: 347 GRAGRLEDALKLFNKMEALQCKPN 370
G+ + + + +
Sbjct: 245 QHLGKPPEVTNRYLS-QLKDAHRS 267
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 6e-07
Identities = 77/413 (18%), Positives = 158/413 (38%), Gaps = 79/413 (19%)
Query: 205 LMQEGYYEKIHELYNEMCNEGNCFPD-TVTYSALISAFGKLGRDISAIRLFDEMKENGLQ 263
Q G +E ++ + PD T L S + R + +
Sbjct: 9 EYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QN 63
Query: 264 PT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY-TYTELIKGLGRA----GRV 317
P A+ Y+ L ++Y + G++++A+ + AL + + + L A G +
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRH------ALRLKPDFIDGYINLAAALVAAGDM 117
Query: 318 EDAYGLFMNMLKEGCKPDIVLI-NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNT 376
E A +++ L+ PD+ + ++L N+L GRLE+A + K A++ +PN +
Sbjct: 118 EGAVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLK--AIETQPNFAVAWS 173
Query: 377 VIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK 436
+ +F ++ A FEK ++ +D
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEK-------------AVTLD--------------------- 199
Query: 437 GFPPCPAAYCSLINGYGKAKRYEAANELF---LELK-EYCGCSSARVYAVMIKHFGKCGR 492
P AY +L N +A+ ++ A + L L + A V+ + + + G
Sbjct: 200 --PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-----AVVHGNLACVYYEQGL 252
Query: 493 LSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRR-MEEDGCVPD-INS 549
+ A+D + + + +P Y L + + G + +A + P +S
Sbjct: 253 IDLAIDTYR--RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC---PTHADS 307
Query: 550 HNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEA 601
N + N + G + A+ ++ K E+ P+ A +++ + L + G +EA
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKA--LEVFPEFAAAHSNLASVLQQQGKLQEA 358
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 46/274 (16%), Positives = 101/274 (36%), Gaps = 34/274 (12%)
Query: 341 NLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEK-MK 399
L + +AG E A + + + +P+ ++ S+ ++ + +K
Sbjct: 4 ELAHREYQAGDFEAAERHCMQ--LWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 400 ANGVLP-SPFTYSILIDGFCKTNRVEKAHLLLEEMEE--KGFPPCPAAYCSLINGYGKAK 456
N P YS L + + + ++++A +E + P Y +L A
Sbjct: 62 QN---PLLAEAYSNLGNVYKERGQLQEA---IEHYRHALRLKPDFIDGYINLAAALVAAG 115
Query: 457 RYEAANELF---LELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD-V 512
E A + + L+ V + + GRL +A + K + +P+
Sbjct: 116 DMEGAVQAYVSALQYNP----DLYCVRSDLGNLLKALGRLEEAKACYL--KAIETQPNFA 169
Query: 513 YTYNALMSGMVRA--GMIDDAYSLLRR-MEEDGCVPD-INSHNIILNGLAKSGGPKRAME 568
++ L G V G I A + + D P+ ++++ + N L ++ RA+
Sbjct: 170 VAWSNL--GCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVA 224
Query: 569 IFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEA 601
+ + + P+ AV + + G+ + A
Sbjct: 225 AYLR--ALSLSPNHAVVHGNLACVYYEQGLIDLA 256
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 46/419 (10%), Positives = 103/419 (24%), Gaps = 119/419 (28%)
Query: 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLF 254
+ ++S + L E Y + + G G+ A+ F
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMADVEKHLELGK-------------KLLAAGQLADALSQF 49
Query: 255 DEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR 313
+ P Y +++ +G+ + AL T++I+
Sbjct: 50 HAAVD--GDPDNYIAYYRRATVFLAMGKSKAALP---------------DLTKVIQ---- 88
Query: 314 AGRVEDAYGLFMNMLKEGCKPDIVLI-NNLINVLGRAGRLEDALKLFNKMEALQCKPNVV 372
K D ++L + G+L++A F K L+ P+
Sbjct: 89 ------------------LKMDFTAARLQRGHLLLKQGKLDEAEDDFKK--VLKSNPS-- 126
Query: 373 TYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEE 432
K + E + + A +
Sbjct: 127 --ENEEKEAQSQLIKSDEMQRLRSQALN----------------AFGSGDYTAA---IAF 165
Query: 433 MEE--KGFPPCPAAYCSLINGYGKAKRYEAANELF---LELKEYCGCSSARVYAVMIKHF 487
+++ + + K A +LK + + + +
Sbjct: 166 LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN----DNTEAFYKISTLY 221
Query: 488 GKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDI 547
+ G ++ + L+ D + ++ ++ V +
Sbjct: 222 YQLGDHELSLSEVR--ECLKLDQD----HK------------RCFAHYKQ------VKKL 257
Query: 548 NSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTIL-----GCLSRAGMFEEA 601
N L + G A + + + +P Y C S+ EA
Sbjct: 258 NKLIESAEELIRDGRYTDATSKYESV--MKTEPSIAEYTVRSKERICHCFSKDEKPVEA 314
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 33/269 (12%), Positives = 63/269 (23%), Gaps = 40/269 (14%)
Query: 234 YSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMK 293
K G+ A F ++ + P+ S K E+++
Sbjct: 97 RLQRGHLLLKQGKLDEAEDDFKKVLK--SNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154
Query: 294 GKGC---ALTVYT--------YTELIKGLGRA----GRVEDAYGLFMNMLKEGCKPD-IV 337
G G A+ EL + G A K K D
Sbjct: 155 GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTE 212
Query: 338 LINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEK 397
+ + + G E +L + L+ + K + + A
Sbjct: 213 AFYKISTLYYQLGDHELSLSEVRE--CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 270
Query: 398 MKANGVLPSPFTYSILID-------GFCKTNRVEKAHLLLEEMEE---------KGFPPC 441
+ + + + K E+ E + P
Sbjct: 271 GRYTDATSK-YESVMKTEPSIAEYTVRSKERIC-HCFSKDEKPVEAIRVCSEVLQMEPDN 328
Query: 442 PAAYCSLINGYGKAKRYEAANELFLELKE 470
A Y + Y+ A + + +E
Sbjct: 329 VNALKDRAEAYLIEEMYDEAIQDYETAQE 357
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 4e-06
Identities = 39/200 (19%), Positives = 69/200 (34%), Gaps = 30/200 (15%)
Query: 194 TANTYNSMILMLMQEGYYEKIHELYN---EMCNE--GNCFPDT-VTYSALISAFGKLGRD 247
A T N++ ++ + G Y++ L E+ + G PD + L G+
Sbjct: 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY 169
Query: 248 ISAIRLFD---EMKENGLQP----TAKIYTTLVSIYFKLGEVEKALGLVQE--MKGKGCA 298
+ E+ + L P AK L S Y K G+ ++A L +E +
Sbjct: 170 EEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE 229
Query: 299 L------TVYTYTELIKGLGRAGRVEDA-----YGLFMNMLKEGCKPDIVL-INNLINVL 346
+ + G+ +D YG + K P + + NL +
Sbjct: 230 FGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALY 288
Query: 347 GRAGRLEDALKLFNKMEALQ 366
R G+ E A L A++
Sbjct: 289 RRQGKFEAAETLEEA--AMR 306
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 6e-06
Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 27/195 (13%)
Query: 194 TANTYNSMILMLMQEGYYEKIHELYN---EMCNE--GNCFPDT-VTYSALISAFGKLGRD 247
T +++++ +G YE L E + G+ PD + L + +
Sbjct: 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY 85
Query: 248 ISAIRLFD---EMKENGLQP----TAKIYTTLVSIYFKLGEVEKALGL---VQEMK---- 293
A L + ++E L A L +Y K G+ ++A L E++
Sbjct: 86 KDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 145
Query: 294 GKGCALTVYTYTELIKGLGRAGRVEDAYGLF---MNMLKE--GCK-PDIVL-INNLINVL 346
GK L G+ E+ + + + + G P++ NNL +
Sbjct: 146 GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCY 205
Query: 347 GRAGRLEDALKLFNK 361
+ G+ + A L+ +
Sbjct: 206 LKQGKFKQAETLYKE 220
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 4e-06
Identities = 38/202 (18%), Positives = 66/202 (32%), Gaps = 34/202 (16%)
Query: 194 TANTYNSMILMLMQEGYYEKIHELYN---EMCNE--GNCFPDT-VTYSALISAFGKLGRD 247
A T N++ ++ + G Y++ L E+ + G PD + L G+
Sbjct: 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA 143
Query: 248 ISAIRLFD---EMKENGLQP----TAKIYTTLVSIYFKLGEVEKALGL----VQEMKGKG 296
+ E+ L P AK L S Y K G+ + A L + K
Sbjct: 144 EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK- 202
Query: 297 CAL------TVYTYTELIKGLGRAGRVEDA-----YGLFMNMLKEGCKPDIVL-INNLIN 344
+ + + D+ YG + K P + + +L
Sbjct: 203 -EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSLGA 260
Query: 345 VLGRAGRLEDALKLFNKMEALQ 366
+ R G+LE A L + A +
Sbjct: 261 LYRRQGKLEAAHTLEDC--ASR 280
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 5e-06
Identities = 37/209 (17%), Positives = 63/209 (30%), Gaps = 42/209 (20%)
Query: 194 TANTYNSMILMLMQEGYYEKIHELYN---EMCNE--GNCFPDT-VTYSALISAFGKLGRD 247
A N + L+ + Y++ L N + + G P T + L +GK G+
Sbjct: 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY 101
Query: 248 ISAIRLFD---EMKENGLQP----TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT 300
A L E++E L AK L + G+ E+ + AL
Sbjct: 102 KEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRR------ALE 155
Query: 301 VY-------------TYTELIKGLGRAGRVEDAYGLFMNMLKEGCK-------PDIVLI- 339
+Y T L + G+ +DA L+ +L + D I
Sbjct: 156 IYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIW 215
Query: 340 NNLINVLGRAGRLEDALKLFNKMEALQCK 368
+ + D+ K
Sbjct: 216 MHAEEREESKDKRRDSAPYGEY--GSWYK 242
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 31/272 (11%), Positives = 70/272 (25%), Gaps = 65/272 (23%)
Query: 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMK 399
++L + G+L++A F K L+ P+ E + +
Sbjct: 75 LQRGHLLLKQGKLDEAEDDFKK--VLKSNPS-------------------EQEEKEAESQ 113
Query: 400 ANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEE--KGFPPCPAAYCSLINGYGKAKR 457
S +D F A + +++ + + K
Sbjct: 114 LVKADEMQRLRSQALDAF-DGADYTAA---ITFLDKILEVCVWDAELRELRAECFIKEGE 169
Query: 458 YEAANELF---LELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYT 514
A +LK + + + + + G ++ + L+ D
Sbjct: 170 PRKAISDLKAASKLKS----DNTEAFYKISTLYYQLGDHELSLSEVR--ECLKLDQD--- 220
Query: 515 YNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ 574
+ ++ ++ V +N L + G A + +
Sbjct: 221 -HK------------RCFAHYKQ------VKKLNKLIESAEELIRDGRYTDATSKYESV- 260
Query: 575 HSEIKPDAVSYNTILG-----CLSRAGMFEEA 601
+ +P Y C S+ EA
Sbjct: 261 -MKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 6e-06
Identities = 43/295 (14%), Positives = 87/295 (29%), Gaps = 32/295 (10%)
Query: 205 LMQEGYYEKIHELYN---EMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEM---- 257
+ +G ++ L E G + V S L G ++ L +
Sbjct: 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 83
Query: 258 -KENGLQPTAKIYTTLVSIYFKLGEV-------EKALGLVQEMKGKGCALTVYTYTELIK 309
+ + I F G + EKA L+ E + + + +
Sbjct: 84 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ 143
Query: 310 GLGRAGRVEDAYGLF---MNMLKEGCKPDIVLI-NNLINVLGRAGRLEDALKLFNKMEAL 365
L R+++A + +L + LI G L++A N++E L
Sbjct: 144 LLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203
Query: 366 QCK----PNVVTYNTVIKSLFESKAP-ASEASAWFEKMKANGVLPSPFT---YSILIDGF 417
+ ++ ++ ++ + A+ W + F + +
Sbjct: 204 LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263
Query: 418 CKTNRVEKAHLLLEEM----EEKGFPPCPA-AYCSLINGYGKAKRYEAANELFLE 467
E A ++LEE+ L Y +A R A + L+
Sbjct: 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 9e-06
Identities = 50/384 (13%), Positives = 94/384 (24%), Gaps = 104/384 (27%)
Query: 230 DTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLV 289
V ++ L + + + +GL P V ++AL +
Sbjct: 191 QVVAIASNNGGKQALETVQRLLPVLC--QAHGLTPA------QVVAIASHDGGKQALETM 242
Query: 290 QEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPD-IVLINNLINVLGR 348
Q L V A+GL PD +V I + I
Sbjct: 243 QR------LLPVLC---------------QAHGL---------PPDQVVAIASNIGGKQA 272
Query: 349 AGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPF 408
++ L + + A P+ + A L
Sbjct: 273 LETVQRLLPVLCQ--AHGLTPD-------------------QVVAIASHGGGKQALE--- 308
Query: 409 TYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELF--- 465
T L+ C+ + + P A S G + + +
Sbjct: 309 TVQRLLPVLCQAHGLT--------------PDQVVAIASHDGGKQALETVQRLLPVLCQA 354
Query: 466 LELKEYCGCSSARVYAVMIKHFGKC----GRLSDAVDLFNEMKKLRCKPD-VYTYNALMS 520
L V I G + + + + L PD V +
Sbjct: 355 HGLT--------PDQVVAIASNGGGKQALETVQRLLPVLCQAHGL--TPDQVVAIASN-- 402
Query: 521 GMVRA-GMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAMEIFTKMQHSEI 578
G +A + +L + PD + + G +R + + Q +
Sbjct: 403 GGKQALETVQRLLPVLCQAHGLT--PDQVVAIASHDGGKQALETVQRLLPVLC--QTHGL 458
Query: 579 KPD-AVSYNTILGCLSRAGMFEEA 601
P V+ + G ++
Sbjct: 459 TPAQVVAIASHDGGKQALETVQQL 482
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 38/253 (15%), Positives = 75/253 (29%), Gaps = 51/253 (20%)
Query: 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT-ANTYNSMILMLMQEGYYEKIHELY 218
+L + L L+I K + P + Y + L + G K++ +
Sbjct: 305 SDLLLCKADTLFVRSRFIDVLAIT--TKILEIDPYNLDVYPLHLASLHESGEKNKLYLIS 362
Query: 219 NEMCNEGNCFPDT-VTYSALISAFGKLGRDISAIRLFDEMKENGLQPT-AKIYTTLVSIY 276
N++ + P+ VT+ A+ + + + A R F K + + P + +
Sbjct: 363 NDLVDR---HPEKAVTWLAVGIYYLCVNKISEARRYFS--KSSTMDPQFGPAWIGFAHSF 417
Query: 277 FKLGEVEKA--------------------LGLVQEMKGK-GCALTVY--------TYTEL 307
GE ++A LG+ G A L
Sbjct: 418 AIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477
Query: 308 IKGLGRA----GRVEDAYGLF-----MNMLKEGCKPDIVLI-NNLINVLGRAGRLEDALK 357
+ LG ++ A F + + + NL + + + A+
Sbjct: 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537
Query: 358 LFNKMEALQCKPN 370
N+ L N
Sbjct: 538 ALNQ--GLLLSTN 548
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 59/462 (12%), Positives = 129/462 (27%), Gaps = 56/462 (12%)
Query: 167 VNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNE-MCNEG 225
+L K + N++ + Y C + + +L + + K + N+ + +G
Sbjct: 137 KCLLTKEDLYNRSSACRYLA--AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDG 194
Query: 226 NCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEK 284
+ + L A + E + + + LVS + + E
Sbjct: 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM--VDAKCYEAFDQLVSNHLLTADEEW 252
Query: 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK--EGCKPDIVLINNL 342
L +++ L ED + L G + L+
Sbjct: 253 DL-VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCK 311
Query: 343 INVLGRAGRLEDALKLFNKMEALQCKPN-VVTYNTVIKSLFESKAPASEASAWFEK-MKA 400
+ L R D L + K L+ P + Y + SL ES ++ +
Sbjct: 312 ADTLFVRSRFIDVLAITTK--ILEIDPYNLDVYPLHLASLHESGEK-NKLYLISNDLVDR 368
Query: 401 NGVLP-SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGF-------PPCPAAYCSLINGY 452
+ P T+ + + N++ +A + F P A+ + +
Sbjct: 369 H---PEKAVTWLAVGIYYLCVNKISEA--------RRYFSKSSTMDPQFGPAWIGFAHSF 417
Query: 453 GKAKRYEAANELF---LELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCK 509
++ A + L + G ++ M + G + A +
Sbjct: 418 AIEGEHDQAISAYTTAARLFQ--GTHLPYLFLGMQ--HMQLGNILLANEYLQ--SSYALF 471
Query: 510 P-DVYTYNALMSGMV--RAGMIDDAYSLLRR-MEEDGCVPDINSHNI-ILNGLA----KS 560
D N L G+V + A + + + L K
Sbjct: 472 QYDPLLLNEL--GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529
Query: 561 GGPKRAMEIFTKMQHSEIKPDAVSYNTILG-CLSRAGMFEEA 601
A++ + + + + +T + + A
Sbjct: 530 KMYDAAIDALNQGL--LLSTNDANVHTAIALVYLHKKIPGLA 569
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 23/133 (17%), Positives = 39/133 (29%), Gaps = 19/133 (14%)
Query: 245 GRDISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY- 302
+ +P + L +G+ VQ L ++
Sbjct: 3 ADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQR------GLALHP 54
Query: 303 TYTELIKGLGRA----GRVEDAYGLFMNMLKEGCKPD-IVLINNLINVLGRAGRLEDALK 357
+ E + LGR R +A L P+ + L + L AG+ E A
Sbjct: 55 GHPEAVARLGRVRWTQQRHAEAAVLLQQASD--AAPEHPGIALWLGHALEDAGQAEAAAA 112
Query: 358 LFNKMEALQCKPN 370
+ + A Q P
Sbjct: 113 AYTR--AHQLLPE 123
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 7e-05
Identities = 44/314 (14%), Positives = 88/314 (28%), Gaps = 55/314 (17%)
Query: 236 ALISAFGKLGRDISAIRLFDEMKE--NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMK 293
A ++ ++GR +E K LQ YF+ VE A Q+++
Sbjct: 22 ASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQ 81
Query: 294 GKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE-------------GCKPDIVLI- 339
+ T+ E++ + G +N+ + +P++V
Sbjct: 82 EE-MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW 140
Query: 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYN--------TVIKSLFESKAPASEA 391
N L V + G + A F+ AL N V+ S E ++
Sbjct: 141 NQLGEVYWKKGDVTSAHTCFSG--ALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDS 198
Query: 392 SAWFEK---MKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEE------------K 436
+ M ++ IL G + + ++ +
Sbjct: 199 VRQAKLAVQMDVL----DGRSWYIL--GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252
Query: 437 GFPPCPAAYCSLINGYGKAKRYEAANELF---LELKEYCGCSSARVYAVMIKHFGKCGRL 493
P + + + + Y A E F L + RL
Sbjct: 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA----WPEPQQREQQLLEFLSRL 308
Query: 494 SDAVDLFNEMKKLR 507
+ ++ + K +
Sbjct: 309 TSLLESKGKTKPKK 322
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 33/227 (14%), Positives = 67/227 (29%), Gaps = 39/227 (17%)
Query: 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT-ANTYNSMILMLMQEGYYEKIHELY 218
V+ + + + + P A+ I L++ ++ L
Sbjct: 22 LDVVVSLAERHYYNCDFKMCYKLTSVV--MEKDPFHASCLPVHIGTLVELNKANELFYLS 79
Query: 219 NEMCNEGNCFPDT-VTYSALISAFGKLGRDI-SAIRLFDEMKENGLQPT-AKIYTTLVSI 275
+++ + +P V++ A+ + +G A R K L+ T +
Sbjct: 80 HKLVDL---YPSNPVSWFAVGCYYLMVGHKNEHARRYLS--KATTLEKTYGPAWIAYGHS 134
Query: 276 YFKLGEVEKAL-----------GLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLF 324
+ E ++A+ G M G G + A F
Sbjct: 135 FAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEY------------GLTNNSKLAERFF 182
Query: 325 MNMLKEGCKP-DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN 370
L P D +++ + V + G + A K F AL+
Sbjct: 183 SQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLD--ALEKIKA 225
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 9e-04
Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 240 AFGKLGRDISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGL----VQEMKG 294
+G A R F + + P + + + F+ GE + A ++++K
Sbjct: 168 EYGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225
Query: 295 KGCALTVYTYTELIKGLGRA----GRVEDAYGLFMNMLKEGCKPDIVLI-NNLINVLGRA 349
G +TV + L+ LG + +A L P + + +
Sbjct: 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV--LIPQNASTYSAIGYIHSLM 283
Query: 350 GRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEA 391
G E+A+ F+ AL + + T++ E SEA
Sbjct: 284 GNFENAVDYFHT--ALGLRRDDTFSVTMLGHCIEMYIGDSEA 323
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 35/213 (16%), Positives = 59/213 (27%), Gaps = 41/213 (19%)
Query: 177 NKALSIFYQIKSRKCKPT-ANTYNSMILMLMQEGYYEKIHELYNE-----------MCNE 224
+ L + +P ++ + + + E + N+
Sbjct: 123 QRCLEL---------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNK 173
Query: 225 GNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE-NGLQPTAKIYTTLVSIYFKLGEVE 283
T S L L+ E NG + T L ++ GE
Sbjct: 174 KGSPGLTRRMSKSPVDSSVL---EGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN 230
Query: 284 KALGLVQEMKGKGCALTVY-TYTELIKGLGRA----GRVEDAYGLFMNMLKEGCKPDIVL 338
+A+ ALTV L LG R E+A + L+ +P +
Sbjct: 231 RAIDAFNA------ALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIR 282
Query: 339 -INNLINVLGRAGRLEDALKLFNKMEALQCKPN 370
NL G +A+ F AL +
Sbjct: 283 SRYNLGISCINLGAYREAVSNFLT--ALSLQRK 313
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 52/319 (16%), Positives = 90/319 (28%), Gaps = 43/319 (13%)
Query: 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEAL 365
L++G ED + + N L + G+ E AL+ K E L
Sbjct: 23 NLMEGENSLDDFEDKVFYRTEFQNR--EFKATMCNLLAYLKHLKGQNEAALECLRKAEEL 80
Query: 366 QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEK 425
+ + + + A ++ V+K
Sbjct: 81 IQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIY---------------------VDK 119
Query: 426 AHLLLEEMEEKGFPPCPAAYCSLINGYGKA--KRYEAANELF---LELK-EYCGCSSARV 479
+ E+ P C K + E A F LE K + +S
Sbjct: 120 VKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG-- 177
Query: 480 YAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD-VYTYN----ALMSGMVRAGMIDDAYSL 534
A+ +A+D + +R PD Y L + L
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLR--QAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKL 235
Query: 535 LRR-MEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLS 593
+ +E+ V D+ + P +A+E+ K E P+ + +GC
Sbjct: 236 VEEALEKAPGVTDV--LRSAAKFYRRKDEPDKAIELLKKAL--EYIPNNAYLHCQIGCCY 291
Query: 594 RAGMFEEAARLMKDMNAKG 612
RA +F+ M K
Sbjct: 292 RAKVFQVMNLRENGMYGKR 310
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 40/256 (15%), Positives = 77/256 (30%), Gaps = 31/256 (12%)
Query: 242 GKLGRDISAI--RLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE-------- 291
+ + ++F + + A + L + G+ E AL +++
Sbjct: 25 MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE 84
Query: 292 ---MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGR 348
+T Y + +GR V+ ++ ++ P + L G
Sbjct: 85 HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW 144
Query: 349 A------GRLEDALKLFNKMEALQCKPNVVTYNT---VIKSLFESKAPASEASAWFEK-M 398
+ E A F K AL+ KP + + + ++ P+ A + +
Sbjct: 145 TRLKCGGNQNERAKVCFEK--ALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI 202
Query: 399 KANGVLPSPFTY--SILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAK 456
+ N L + + L+EE EK P S Y +
Sbjct: 203 RLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-APGVTDVLRSAAKFYRRKD 261
Query: 457 RYEAANELF---LELK 469
+ A EL LE
Sbjct: 262 EPDKAIELLKKALEYI 277
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 48/332 (14%), Positives = 96/332 (28%), Gaps = 58/332 (17%)
Query: 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240
+FY+ + + + A N + + +G E E +
Sbjct: 37 KVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRK-------------------- 76
Query: 241 FGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKG---KG 296
A L + + + + + +Y+ +G + V ++K K
Sbjct: 77 ---------AEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127
Query: 297 CALTVYTYTELIKGLGRA------GRVEDAYGLFMNMLKEGCKPDIV-LINNLINV---L 346
+ EL G + E A F L++ KP + L L
Sbjct: 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRL 185
Query: 347 GRAGRLEDALKLFNKMEALQCKP-NVVTYN---TVIKSLFESKAPASEASAWFEKMKANG 402
++A+ + A++ P N + + E E E +A
Sbjct: 186 DNWPPSQNAIDPLRQ--AIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVE--EALE 241
Query: 403 VLPS-PFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAA 461
P + + + +KA LL++ E P +C + Y +AK ++
Sbjct: 242 KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY-IPNNAYLHCQIGCCY-RAKVFQVM 299
Query: 462 NELFLELKEYCGCSSARVYAVMIKHFGKCGRL 493
N + +A + H K
Sbjct: 300 NLRENGMYGKRKLLELIGHA--VAHLKKADEA 329
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 31/238 (13%), Positives = 66/238 (27%), Gaps = 47/238 (19%)
Query: 141 IGVMWKSIQDMVRSTCVMGPS-VLSEIVNILGKA-KMVNKALSIFYQIKSRKCKPTANTY 198
+G ++ + E+ + L A + LS+ + R +
Sbjct: 133 LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAA--QGRAF 190
Query: 199 NSMILMLMQEGYYEKIHELYN---EMCNE-GNCFPDTVTYSALISAFGKLGRDISAIRLF 254
++ G + + + E G+ + YS L +A+ LG +A +
Sbjct: 191 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250
Query: 255 D---EMKE--NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIK 309
+ A+ +L + Y L + EKA+ + L +
Sbjct: 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK------HLAIA------- 297
Query: 310 GLGRAGRVEDAYGLFMNMLKEGCKPDIVLI-NNLINVLGRAGRLEDALKLFNKMEALQ 366
+ + +L N G + A+ K L+
Sbjct: 298 ------------------QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK--HLE 335
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 8e-04
Identities = 36/203 (17%), Positives = 71/203 (34%), Gaps = 17/203 (8%)
Query: 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPN-VVTYNTVIKSLFESKAPASEASAWFEKM 398
NNL N+ G +E+A++L+ K AL+ P ++ + L + EA ++
Sbjct: 13 NNLANIKREQGNIEEAVRLYRK--ALEVFPEFAAAHSNLASVLQQQGKLQ-EALMHYK-- 67
Query: 399 KANGVLP-SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKR 457
+A + P YS + + + V+ A + P A+ +L + + +
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGN 126
Query: 458 YEAANELF---LELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYT 514
A + L+LK Y + +D + ++ + D
Sbjct: 127 IPEAIASYRTALKLKP----DFPDAYCNLAHCLQIVCDWTDYDERMKKL--VSIVADQLE 180
Query: 515 YNALMSGMVRAGMIDDAYSLLRR 537
N L S M+ R+
Sbjct: 181 KNRLPSVHPHHSMLYPLSHGFRK 203
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 638 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.61 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.61 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.55 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.54 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.53 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.52 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.47 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.46 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.46 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.45 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.43 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.42 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.41 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.4 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.35 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.33 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.29 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.28 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.28 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.26 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.25 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.25 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.17 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.12 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.1 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.1 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.05 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.05 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.05 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.04 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.03 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.02 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.01 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.01 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.0 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.98 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.98 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.98 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.96 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.94 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.94 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.93 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.93 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.92 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.91 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.91 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.9 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.87 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.87 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.85 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.83 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.76 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.75 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.7 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.7 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.69 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.69 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.69 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.68 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.67 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.66 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.64 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.64 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.6 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.6 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.58 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.58 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.56 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.55 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.55 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.54 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.54 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.53 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.53 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.51 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.5 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.49 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.47 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.47 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.46 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.45 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.44 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.43 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.41 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.4 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.39 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.39 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.38 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.37 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.37 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.35 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.33 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.32 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.32 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.3 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.3 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.27 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.27 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.26 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.26 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.24 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.24 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.23 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.22 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.21 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.21 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.18 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.16 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.11 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.09 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.08 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.08 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.05 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.05 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.01 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.01 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.0 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.98 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.97 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.94 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.94 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.94 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.93 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.9 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.88 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.86 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.83 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.82 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.76 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.7 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.7 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.65 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.64 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.55 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.55 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.53 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.5 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.47 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.45 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.44 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.16 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.7 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.68 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.62 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.61 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.56 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.55 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.48 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.43 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.36 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.35 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.26 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.2 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.1 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.98 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.97 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.96 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.87 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.84 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.65 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.62 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.03 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.97 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.7 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.67 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.53 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.39 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.56 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.29 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 92.98 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.19 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 91.67 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.53 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.45 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.15 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.77 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.42 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.29 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.8 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.56 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.45 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.15 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.13 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.08 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.83 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.26 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.96 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.14 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.82 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 83.13 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.04 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.46 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 80.38 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 80.24 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=354.96 Aligned_cols=490 Identities=10% Similarity=-0.010 Sum_probs=419.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
++...|+.++..+.+.|++++|..+++++.. ..|+..++..++.+|.+.|++++|..+|+++... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 4678999999999999999999999999986 5678899999999999999999999999998654 67999999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCC--------------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEG--------------NCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKI 268 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 268 (638)
.+|.+.|++++|+++|+++.... ...++..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHH
Confidence 99999999999999999643322 011358899999999999999999999999999864 235666
Q ss_pred HHHHHHHHHhcCCHHHHH--HH-HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006614 269 YTTLVSIYFKLGEVEKAL--GL-VQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINV 345 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~--~~-~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 345 (638)
+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. .++..+++.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 776766555444333222 11 455555555556667888889999999999999999999876 4799999999999
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 346 LGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEK 425 (638)
Q Consensus 346 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 425 (638)
|.+.|++++|.++|+++.+.+. .+..+++.++..+...|+..++ ..+++.+.... +.+..++..++..|.+.|++++
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKL-YLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHH-HHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHH-HHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999987663 3778899999999999999888 88888887543 5578899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 426 AHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKK 505 (638)
Q Consensus 426 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (638)
|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL-FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998865 667889999999999999999999999999986 446789999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC
Q 006614 506 LRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED----GCVPD--INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIK 579 (638)
Q Consensus 506 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 579 (638)
.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ .
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 64 457899999999999999999999999999876 66787 7899999999999999999999999998754 3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 006614 580 PDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 580 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
.+..+|..+..+|.+.|++++|.+.++++.+.. +-+...|..+...|
T Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 548 NDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 478999999999999999999999999999752 33455665555544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=346.22 Aligned_cols=465 Identities=12% Similarity=0.020 Sum_probs=403.2
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006614 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
.++...|+.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|+.+|+++.... ++..+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~ 155 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYN---RSSACRYL 155 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGG---TCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccc---cchhHHHH
Confidence 357788999999999999999999999999864 6788999999999999999999999999986542 78999999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 006614 237 LISAFGKLGRDISAIRLFDEMKEN---------------GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV 301 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 301 (638)
++..|.+.|++++|+++|+++... |.+++..+|+.++.+|.+.|++++|+++|++|.+.++. +.
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 234 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CY 234 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hh
Confidence 999999999999999999953321 23446889999999999999999999999999987654 56
Q ss_pred HHHHHHHHHHHhcCCHHHHHH--H-HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006614 302 YTYTELIKGLGRAGRVEDAYG--L-FMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVI 378 (638)
Q Consensus 302 ~~~~~li~~~~~~g~~~~A~~--~-~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 378 (638)
..+..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. .++..+++.+.
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 677777665554443332221 1 555555555556677888899999999999999999999775 48999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 006614 379 KSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRY 458 (638)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 458 (638)
..+.+.|+..++ ..+|+++...+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++
T Consensus 313 ~~~~~~g~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 313 DTLFVRSRFIDV-LAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHTTCHHHH-HHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCHHHH-HHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccH
Confidence 999999999888 88889888764 3477889999999999999999999999999765 77899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 006614 459 EAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRM 538 (638)
Q Consensus 459 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 538 (638)
++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++
T Consensus 390 ~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 390 SEARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999886 44578899999999999999999999999998864 457889999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006614 539 EEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHS----EIKPD--AVSYNTILGCLSRAGMFEEAARLMKDMNAKG 612 (638)
Q Consensus 539 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 612 (638)
.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 468 YALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9864 347899999999999999999999999999874 66787 7899999999999999999999999999764
Q ss_pred CCCCHHhHHHHHHHHhccCCccCC
Q 006614 613 FEYDQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 613 ~~p~~~~~~~l~~~~~~~g~~~~a 636 (638)
+.+..+|..+..+|.+.|++++|
T Consensus 547 -p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 547 -TNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp -SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHH
Confidence 55889999999999999998765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.98 E-value=6e-31 Score=269.05 Aligned_cols=186 Identities=18% Similarity=0.185 Sum_probs=118.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC---------CHHHHHHHHHHHHhCCCCCCHHHH
Q 006614 445 YCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCG---------RLSDAVDLFNEMKKLRCKPDVYTY 515 (638)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~~~~~~p~~~~~ 515 (638)
++.+|++|++.|++++|.++|++|.+.|+.||..+||.||.+|++.+ .+++|.++|++|.+.|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 33444444444444444444444444444444444444444444332 256666777777777777777777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc
Q 006614 516 NALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRA 595 (638)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 595 (638)
+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 77777777777777777777777777777777777777777777777777777777777767777777777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhcc
Q 006614 596 GMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKV 630 (638)
Q Consensus 596 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 630 (638)
|++++|.+++++|.+.|..|+..||+.|++.|...
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 77777777777777767777777777776666543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-27 Score=237.90 Aligned_cols=380 Identities=14% Similarity=0.080 Sum_probs=219.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (638)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 455566677777777776666542 4445556666666666677777777666665542 33566666677777777777
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006614 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
++|++.|+++.+..+ .+..+|..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 84 ~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLKP--DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 777777777666543 345566666666666666666666666666542 22344555566666666666666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCh
Q 006614 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNV 371 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 371 (638)
+.+..+. +..+|..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+++.....
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----- 233 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS----- 233 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-----
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----
Confidence 6655332 4556666666666666666666666666655432 45555555566666666666655555443311
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006614 372 VTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLING 451 (638)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 451 (638)
+.+..++..+..++.+.|++++|...++++.+.+ +.++.++..+...
T Consensus 234 --------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 280 (388)
T 1w3b_A 234 --------------------------------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANA 280 (388)
T ss_dssp --------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHH
T ss_pred --------------------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 1133445555566666666666666666666554 4445556666666
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 006614 452 YGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDA 531 (638)
Q Consensus 452 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 531 (638)
+.+.|++++|.+.++++.+. .+.+..++..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|
T Consensus 281 ~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666665554 33445555555555555555555555555555432 22344555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006614 532 YSLLRRMEEDGCVPDINSHNIILNGLAK 559 (638)
Q Consensus 532 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 559 (638)
...|+++.+.. +.+...|..+...+..
T Consensus 359 ~~~~~~a~~~~-p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 359 LMHYKEAIRIS-PTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHhHHHHHHH
Confidence 55555555432 1124444444444433
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-27 Score=237.13 Aligned_cols=378 Identities=18% Similarity=0.145 Sum_probs=174.4
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+.+.|++++|.+.++++.+..+ .+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 3344444444444444444332 233333344444444444444444444444321 2234444444444444444444
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
|++.|+++.+..+. +..+|..+...+.+.|++++|...|+++.+..+. +...+..+...+...|++++|.+.|+++.+
T Consensus 86 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44444444443221 3334444444444555555555555444443222 233344444444455555555555554433
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006614 365 LQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAA 444 (638)
Q Consensus 365 ~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 444 (638)
.. | .+..+|..+...+.+.|++++|...|+++.+.+ +.+...
T Consensus 164 ~~--p-----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T 1w3b_A 164 TQ--P-----------------------------------NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp HC--T-----------------------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hC--C-----------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 11 1 112233333344444444444444444444432 333444
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 006614 445 YCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR 524 (638)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 524 (638)
+..+...+...|++++|...+.+..+. .+.+..++..+...|...|++++|...|+++.+.. +.+..+|..+...+.+
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSL-SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 444444444444444444444444443 12234444555555555555555555555555432 2234455555555555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006614 525 AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARL 604 (638)
Q Consensus 525 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 604 (638)
.|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+..++..+..++.+.|++++|.+.
T Consensus 284 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555555542 3345555555555555666666666665555421 12345555555666666666666666
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHhcc
Q 006614 605 MKDMNAKGFEYDQITYSSILEAVGKV 630 (638)
Q Consensus 605 ~~~m~~~~~~p~~~~~~~l~~~~~~~ 630 (638)
++++.+.. +.+...|..+...+...
T Consensus 362 ~~~a~~~~-p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 362 YKEAIRIS-PTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHTTC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHhhC-CCCHHHHHhHHHHHHHc
Confidence 66555321 22233444444444433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=262.86 Aligned_cols=211 Identities=17% Similarity=0.188 Sum_probs=181.7
Q ss_pred CChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC------
Q 006614 385 KAPASEASAWFEKMKANGVLPSP-FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKR------ 457 (638)
Q Consensus 385 ~~~~~~~~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 457 (638)
|+....++.+.+.+.+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+.
T Consensus 3 G~~~s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~ 82 (501)
T 4g26_A 3 GHMASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSP 82 (501)
T ss_dssp ---------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSC
T ss_pred ccccchHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhh
Confidence 33444456677777777766654 45888999999999999999999999999999999999999999987654
Q ss_pred ---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 006614 458 ---YEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSL 534 (638)
Q Consensus 458 ---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 534 (638)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc
Q 006614 535 LRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRA 595 (638)
Q Consensus 535 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 595 (638)
|++|.+.|+.||..||++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999998764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-23 Score=218.15 Aligned_cols=440 Identities=9% Similarity=-0.039 Sum_probs=277.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|......+.+.|++++|+..|+++++.. |++.++..++.++.+.|++++|...|+++.+.++ .+..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 4567788888899999999999999988854 6888899999999999999999999999887753 377888889999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+.+.|++++|+..|+++...++ ++......++..+........+.+.+..+...+..|+...+..-............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD--FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS--CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHhhHHHHHHHHHHHHhcCC--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999888765 45555555555554444344444444333222222221111111000001111111
Q ss_pred HHHHHHHHHhCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCCC--------CCHHHH
Q 006614 285 ALGLVQEMKGKGC---------ALTVYTYTELIKGLGR---AGRVEDAYGLFMNMLK-----EGCK--------PDIVLI 339 (638)
Q Consensus 285 A~~~~~~m~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~~--------p~~~~~ 339 (638)
...+...+..... +.+...+......+.. .|++++|...|+++.+ ..-. .+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1111111111110 1113344444444443 6777777777777776 2111 124466
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006614 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 340 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~ 419 (638)
..+...+...|++++|...++.+.+.. |+...+..+...+...|+..++ ...++...... +.+...+..+...+..
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEY-YNYFDKALKLD-SNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTG-GGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHH-HHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence 667777777777777777777776644 3355555666666666666555 55555555442 2345567777777778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 006614 420 TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDL 499 (638)
Q Consensus 420 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 499 (638)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|...
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 888888888888777764 556677777777777888888888888777765 334566777777777778888888887
Q ss_pred HHHHHhCCC-CCC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006614 500 FNEMKKLRC-KPD----VYTYNALMSGMVR---AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 500 ~~~m~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
++++.+... .++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...+.+.|++++|...|+
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777765321 111 2367777777777 788888888887777653 2356677777777778888888888887
Q ss_pred HhhhC
Q 006614 572 KMQHS 576 (638)
Q Consensus 572 ~m~~~ 576 (638)
+..+.
T Consensus 474 ~a~~~ 478 (514)
T 2gw1_A 474 ESADL 478 (514)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-23 Score=218.31 Aligned_cols=445 Identities=11% Similarity=-0.014 Sum_probs=331.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006614 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
...+......+.+.|++++|+..|+++.+.. |+..+|..+..++.+.|++++|++.|+++.+.++ .+...+..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP--DYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh--HHHHHHHHHHH
Confidence 3456777888999999999999999998874 6899999999999999999999999999998775 67789999999
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 240 AFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED 319 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 319 (638)
.+.+.|++++|...|+++.+.+ +++......++..+.+......+.+.+..+...+..|+...+...............
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999999875 345555556666555554445554444443333222222222111111111111111
Q ss_pred HHHHHHHHHHcCC---------CCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHH-----CCCCC--------ChhhH
Q 006614 320 AYGLFMNMLKEGC---------KPDIVLINNLINVLGR---AGRLEDALKLFNKMEA-----LQCKP--------NVVTY 374 (638)
Q Consensus 320 A~~~~~~~~~~~~---------~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~~p--------~~~~~ 374 (638)
...+...+..... +.+...+......+.. .|++++|...++++.+ ....| +...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1111111111111 1124455555555554 8999999999999987 32122 34567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006614 375 NTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGK 454 (638)
Q Consensus 375 ~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 454 (638)
..+...+...|+..++ ...++.+.... |+...+..+..++...|++++|...++++.+.. +.+..++..+...+..
T Consensus 241 ~~~~~~~~~~~~~~~A-~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGA-HEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHSSCHHHH-HHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHH-HHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence 7777788888988887 77778777654 338888999999999999999999999999875 6678899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 006614 455 AKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSL 534 (638)
Q Consensus 455 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 534 (638)
.|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...
T Consensus 317 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKEL-DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHT-CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHh-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999986 34467789999999999999999999999998763 34567888999999999999999999
Q ss_pred HHHHHHCCCC-CC----HHHHHHHHHHHHh---cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 535 LRRMEEDGCV-PD----INSHNIILNGLAK---SGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMK 606 (638)
Q Consensus 535 ~~~m~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 606 (638)
++++.+.... ++ ...+..+...+.. .|++++|...++++.... +.+..++..+..++.+.|++++|.+.++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999874211 12 3488889999999 999999999999998743 2367888999999999999999999999
Q ss_pred HHHhCCCCCCHH
Q 006614 607 DMNAKGFEYDQI 618 (638)
Q Consensus 607 ~m~~~~~~p~~~ 618 (638)
+..+. .|+..
T Consensus 474 ~a~~~--~~~~~ 483 (514)
T 2gw1_A 474 ESADL--ARTME 483 (514)
T ss_dssp HHHHH--CSSHH
T ss_pred HHHHh--ccccH
Confidence 99964 45543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-22 Score=202.74 Aligned_cols=371 Identities=12% Similarity=0.082 Sum_probs=214.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006614 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
+...+..++..+.+.|++++|+..|+++.+..+ .+...+..+...+...|++++|+..|+++.+.+ +.+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 555566666666666666666666666665543 455666666666666666666666666666543 22455566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006614 274 SIYFKLGEVEKALGLVQEMKGKGCALTV---YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 350 (638)
..|.+.|++++|.+.|+++.+.++. +. ..+..++..+.. ..+..+...+.+.|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcC
Confidence 6666666666666666666554321 22 333333332211 11223344566778
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006614 351 RLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLL 430 (638)
Q Consensus 351 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 430 (638)
++++|...++.+.+.. | .+...+..+..+|.+.|++++|...+
T Consensus 158 ~~~~A~~~~~~~~~~~--~-----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC--V-----------------------------------WDAELRELRAECFIKEGEPRKAISDL 200 (450)
T ss_dssp CHHHHHHHHHHHHHHC--T-----------------------------------TCHHHHHHHHHHHHHTTCGGGGHHHH
T ss_pred CHHHHHHHHHHHHHhC--C-----------------------------------CChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888776532 1 13334444555555555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHH------------HHHHHccCCHHHHHH
Q 006614 431 EEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVM------------IKHFGKCGRLSDAVD 498 (638)
Q Consensus 431 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~ 498 (638)
+++.+.. +.+..++..++..+...|++++|...|+++.+. .+.+...+..+ ...+...|++++|..
T Consensus 201 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 278 (450)
T 2y4t_A 201 KAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 278 (450)
T ss_dssp HHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555443 344555555555555555555555555555543 12223333322 666677777777777
Q ss_pred HHHHHHhCCCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 006614 499 LFNEMKKLRCKPD-----VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKM 573 (638)
Q Consensus 499 ~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 573 (638)
.|+++.+.. |+ ...|..+...+.+.|++++|...++++.+.. +.+...|..+..+|...|++++|...++++
T Consensus 279 ~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 279 KYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 777776642 33 3356666677777777777777777776642 235667777777777777777777777777
Q ss_pred hhCCCCC-CHHHHHHHHH------------HHHccC-----CHHHHHHHHHHHHhCCCCCC-----------HHhHHHHH
Q 006614 574 QHSEIKP-DAVSYNTILG------------CLSRAG-----MFEEAARLMKDMNAKGFEYD-----------QITYSSIL 624 (638)
Q Consensus 574 ~~~~~~p-~~~~~~~l~~------------~~~~~g-----~~~~A~~~~~~m~~~~~~p~-----------~~~~~~l~ 624 (638)
.+. .| +...+..+.. .|...| +.+++.+.++++... ..|| ...+..+.
T Consensus 356 l~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~-~~pd~~~~~~~~~~a~~~~~~i~ 432 (450)
T 2y4t_A 356 QEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ-WHPDNFQNEEEKKKAEKKFIDIA 432 (450)
T ss_dssp HTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH-SCGGGCCSHHHHHHHHHHHHHHH
T ss_pred HHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH-hCCCCCCCchHHHHHHHHHHHHH
Confidence 653 33 3444444442 233334 567778888763321 2333 23788888
Q ss_pred HHHhccCCccCC
Q 006614 625 EAVGKVDEDRNP 636 (638)
Q Consensus 625 ~~~~~~g~~~~a 636 (638)
+++...|+.++.
T Consensus 433 ~ay~~L~d~~~r 444 (450)
T 2y4t_A 433 AAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHSSGGGGC
T ss_pred HHHHHhCCHHHH
Confidence 888888887764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-21 Score=201.73 Aligned_cols=339 Identities=9% Similarity=0.021 Sum_probs=221.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
.+...|..++..+.+.|++++|...|+.+++. .+.+..++..++.++.+.|++++|...|+++.+.++. +..++..++
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 34455555555555555555555555555543 2334555555555555555555555555555544322 445555555
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDT---VTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (638)
..|.+.|++++|.+.|+++.+..+ .+. ..+..++..+.. ..+..+...+.+.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNP--SENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGS 156 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHc
Confidence 555555555555555555555432 222 333333322111 1122335557888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006614 280 GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 359 (638)
|++++|++.++++.+..+. +...+..++..+.+.|++++|...|+++.+..+ .+..++..++..|...|++++|...|
T Consensus 157 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998876543 788899999999999999999999999988643 37889999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006614 360 NKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFP 439 (638)
Q Consensus 360 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (638)
+++.... |+.......+..+ . ....+..+...+.+.|++++|...|+++.+.. +
T Consensus 235 ~~~~~~~--p~~~~~~~~~~~~-----------------~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p 288 (450)
T 2y4t_A 235 RECLKLD--QDHKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-P 288 (450)
T ss_dssp HHHHHHC--TTCHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-C
T ss_pred HHHHHhC--CChHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 9987643 4443332222111 0 01123445778888999999999999988753 3
Q ss_pred CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHH
Q 006614 440 PC----PAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD-VYT 514 (638)
Q Consensus 440 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~ 514 (638)
.+ ...+..+...+.+.|++++|...++++.+. .+.+...|..+..+|...|++++|...|+++.+. .|+ ...
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 365 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQI 365 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHH
Confidence 33 346777888888888888888888888775 3456778888888888888888888888888774 343 444
Q ss_pred HHHHH
Q 006614 515 YNALM 519 (638)
Q Consensus 515 ~~~l~ 519 (638)
+..+.
T Consensus 366 ~~~l~ 370 (450)
T 2y4t_A 366 REGLE 370 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-21 Score=206.13 Aligned_cols=434 Identities=12% Similarity=0.042 Sum_probs=308.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+.+.|++++|...|+++++.. +.++.++..+..++.+.|++++|+..|+++.+..+ .+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 4577888899999999999999999998864 56788999999999999999999999999988753 378889999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG--LQPTAKIYTTLVSIYFKLGEV 282 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~ 282 (638)
+...|++++|++.|+ .....+ +. ....+..+...+...+|...++++.... ..+........+..+....+.
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~---~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNG---DF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHcCCHHHHHHHHH-HHhcCC---CC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999996 443332 21 1222344555566678888888886531 011111123344445566666
Q ss_pred HHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHH
Q 006614 283 EKALGLVQEMKGKGCALTVY-TYTELIKGLGR--------AGRVEDAYGLFMNMLKEGCKPD-------IVLINNLINVL 346 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~li~~~ 346 (638)
+.+...+...... .+... ....+...+.. .|++++|..+|+++.+..+. + ..++..+...+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHH
Confidence 6665554433322 12211 22223222222 24788888888888876433 2 23466667778
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006614 347 GRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKA 426 (638)
Q Consensus 347 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 426 (638)
...|++++|...++.+.+.. |+...+..+...+...|+..++ ...++...... +.+..++..+...+...|++++|
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEF-FKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHH-HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHH-HHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 88888899998888887754 5566777777777777777777 66666666543 34677888888899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 427 HLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...|+++.+.
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99999988875 566788888999999999999999999998886 4456778888899999999999999999887654
Q ss_pred C-----CCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006614 507 R-----CKPDVYTYNALMSGMVRA----------GMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 507 ~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
. .......+..+...+... |++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.|+
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 2 111122234445666777 99999999999988864 3367888889999999999999999999
Q ss_pred HhhhC
Q 006614 572 KMQHS 576 (638)
Q Consensus 572 ~m~~~ 576 (638)
+..+.
T Consensus 487 ~al~~ 491 (537)
T 3fp2_A 487 DSAIL 491 (537)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98864
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.3e-22 Score=208.03 Aligned_cols=429 Identities=13% Similarity=0.061 Sum_probs=326.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006614 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
...+..+...+.+.|++++|+..|+++.+..+ .+..+|..+..+|.+.|++++|++.|+++.+.++ .+...+..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKP--DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--chHHHHHHHHH
Confidence 45677888899999999999999999988753 3889999999999999999999999999998875 67889999999
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHh
Q 006614 240 AFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG------CALTVYTYTELIKGLGR 313 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~ 313 (638)
.+...|++++|+..|+.+.. .|+ .....+..+...+...+|...++++.... ..|+... +..+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL---NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS----LASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH----HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhc---CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH----HHHHHH
Confidence 99999999999999964322 222 22233445566666788999998886541 2233333 344555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcc--------CCHHHHHHHHHHHHHCCCCCC--------hhhHHH
Q 006614 314 AGRVEDAYGLFMNMLKEGCKPDI-VLINNLINVLGRA--------GRLEDALKLFNKMEALQCKPN--------VVTYNT 376 (638)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~p~--------~~~~~~ 376 (638)
..+.+.+...+...... .+.. .....+...+... |++++|..+++.+.+.. |+ ...+..
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCY 248 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHH
Confidence 66666665554443322 2222 2333333333322 47899999999998754 44 224555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 006614 377 VIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAK 456 (638)
Q Consensus 377 ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 456 (638)
+-..+...++..++ ...++..... .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 249 ~g~~~~~~~~~~~A-~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 249 TGIFHFLKNNLLDA-QVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHTTCHHHH-HHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcccHHHH-HHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcC
Confidence 55667777887777 7777777765 4568889999999999999999999999999876 678899999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 006614 457 RYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLR 536 (638)
Q Consensus 457 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 536 (638)
++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+
T Consensus 325 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp CHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999873 4567889999999999999999999999998864 4456788899999999999999999999
Q ss_pred HHHHCC-----CCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 006614 537 RMEEDG-----CVPDINSHNIILNGLAKS----------GGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEA 601 (638)
Q Consensus 537 ~m~~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 601 (638)
++.+.. .......+......+... |++++|...|+++.+.. +.+...+..+..++.+.|++++|
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 988642 111223344556677777 99999999999998743 23678899999999999999999
Q ss_pred HHHHHHHHhC
Q 006614 602 ARLMKDMNAK 611 (638)
Q Consensus 602 ~~~~~~m~~~ 611 (638)
.+.+++..+.
T Consensus 482 ~~~~~~al~~ 491 (537)
T 3fp2_A 482 IELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999874
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-18 Score=171.08 Aligned_cols=325 Identities=9% Similarity=0.036 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
+..|..+...+.+.|++++|...++.+++.. +.++.++..+...+...|++++|...|+++.+..+ .+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHH
Confidence 3455556666666666666666666655532 34455556666666666666666666666555422 245555556666
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCC---C-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFP---D-TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
+...|++++|...|+++.+.. | + ...+..+..... ...+..+...+...|
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN---PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHHhcC---CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 666666666666666665543 3 1 111111111000 111233467788888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 360 (638)
++++|.+.++++.+..+. +...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|...++
T Consensus 135 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998888876543 6778888888888999999999999988877543 77888888889999999999999998
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006614 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP 440 (638)
Q Consensus 361 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 440 (638)
...+.. |+...... .+..+. .......+...+.+.|++++|...++++.+.. +.
T Consensus 213 ~a~~~~--~~~~~~~~-----------------~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 266 (359)
T 3ieg_A 213 ECLKLD--QDHKRCFA-----------------HYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PS 266 (359)
T ss_dssp HHHHHC--TTCHHHHH-----------------HHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CS
T ss_pred HHHhhC--ccchHHHH-----------------HHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 887643 33222111 111111 11223334666788888888888888887764 33
Q ss_pred CHH----HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 441 CPA----AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 441 ~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
+.. .+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|...|++..+.
T Consensus 267 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 267 VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 332 2444566666777777777777766664 3345566666666666666666666666666654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-18 Score=169.53 Aligned_cols=328 Identities=9% Similarity=0.037 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI 275 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 275 (638)
..+..+...+...|++++|+..|+++.+..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3444444555555555555555555544433 334445555555555555555555555554432 1234445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC--CCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006614 276 YFKLGEVEKALGLVQEMKGKGCA--LTVYTYT------------ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINN 341 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 341 (638)
+...|++++|.+.++++.+..+. .+...+. .+...+...|++++|...++++.+..+. +..++..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHH
Confidence 55555555555555555543220 0222222 2245556666666666666666655332 4555566
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006614 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421 (638)
Q Consensus 342 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 421 (638)
+...+...|++++|...++.+.+.. +.+...+..+...+...|
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-------------------------------------~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-------------------------------------SDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-------------------------------------SCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-------------------------------------CCCHHHHHHHHHHHHHcC
Confidence 6666666666666666665554421 123344555566666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
++++|...+++..+.. +.+...+..+... . .......+...+.+.|++++|...++
T Consensus 203 ~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~ 258 (359)
T 3ieg_A 203 DHELSLSEVRECLKLD-QDHKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYE 258 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-ccchHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6777777666666543 3333322211100 0 01112223455666666677776666
Q ss_pred HHHhCCCCCC-H----HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006614 502 EMKKLRCKPD-V----YTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHS 576 (638)
Q Consensus 502 ~m~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 576 (638)
++.+.. |+ . ..+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...|+++.+.
T Consensus 259 ~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 259 SVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666543 22 2 223445566667777777777777776642 225666777777777777777777777777653
Q ss_pred CCCCC-HHHHHHHHHHHH
Q 006614 577 EIKPD-AVSYNTILGCLS 593 (638)
Q Consensus 577 ~~~p~-~~~~~~l~~~~~ 593 (638)
.|+ ...+..+..+..
T Consensus 336 --~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 336 --NENDQQIREGLEKAQR 351 (359)
T ss_dssp --CTTCHHHHHHHHHHHH
T ss_pred --CCCChHHHHHHHHHHH
Confidence 233 444555554443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-16 Score=162.88 Aligned_cols=352 Identities=14% Similarity=0.088 Sum_probs=218.9
Q ss_pred CHHHHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCC
Q 006614 159 GPSVLSEIVNILGK----AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ----EGYYEKIHELYNEMCNEGNCFPD 230 (638)
Q Consensus 159 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 230 (638)
++..+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|++.|++..+.+ +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----C
Confidence 45555555555555 555666666666555542 45555555555555 555666666666555532 3
Q ss_pred HHHHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 231 TVTYSALISAFGK----LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK----LGEVEKALGLVQEMKGKGCALTVY 302 (638)
Q Consensus 231 ~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~ 302 (638)
...+..+...|.. .+++++|.+.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 3444445555544 455555555555555543 44455555555554 455555555555555543 444
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCChhhH
Q 006614 303 TYTELIKGLGR----AGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGR----AGRLEDALKLFNKMEALQCKPNVVTY 374 (638)
Q Consensus 303 ~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~ 374 (638)
.+..+...|.. .++.++|...|++..+.| +...+..+...|.. .+++++|..+|++..+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~---------- 251 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE---------- 251 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----------
Confidence 55555555544 455555555555555443 33444444444443 4455555555554433
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006614 375 NTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK----TNRVEKAHLLLEEMEEKGFPPCPAAYCSLIN 450 (638)
Q Consensus 375 ~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 450 (638)
.| +...+..+...|.. .++.++|+..|++..+.| ++..+..+..
T Consensus 252 --------------------------~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~ 299 (490)
T 2xm6_A 252 --------------------------QG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAH 299 (490)
T ss_dssp --------------------------TT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred --------------------------CC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 32 23344445555555 678888888888877654 4566677777
Q ss_pred HHHcc-----CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006614 451 GYGKA-----KRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCG---RLSDAVDLFNEMKKLRCKPDVYTYNALMSGM 522 (638)
Q Consensus 451 ~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 522 (638)
.|... ++.++|...|++..+.+ +...+..+...|...| ++++|...|++..+.+ +...+..+...|
T Consensus 300 ~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 373 (490)
T 2xm6_A 300 LYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNAL 373 (490)
T ss_dssp HHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 77766 78888888888887763 3456667777776655 7788888888888764 667777888888
Q ss_pred HH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhCC
Q 006614 523 VR----AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK----SGGPKRAMEIFTKMQHSE 577 (638)
Q Consensus 523 ~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 577 (638)
.. .+++++|.+.|++..+.| +...+..+...|.+ .+++++|...|++..+.+
T Consensus 374 ~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 374 LQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 87 788888999988888865 56777778888887 788899999998888765
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.2e-16 Score=158.95 Aligned_cols=364 Identities=11% Similarity=-0.000 Sum_probs=284.7
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHH
Q 006614 108 KIQFFKWAGRRRNFEHNSTTYMALIRCLDE----TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGK----AKMVNKA 179 (638)
Q Consensus 108 a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 179 (638)
++..+..+.... ++.++..+...|.. .+++++|+..++...+.| ++..+..+...|.. .+++++|
T Consensus 26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 355555444433 77888889999988 899999999999998854 67889999999998 8999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc----cCChHHHH
Q 006614 180 LSIFYQIKSRKCKPTANTYNSMILMLMQ----EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK----LGRDISAI 251 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 251 (638)
...|++..+.| +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .++.++|.
T Consensus 99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99999998874 78888899999998 889999999999998864 56677888888876 78999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 006614 252 RLFDEMKENGLQPTAKIYTTLVSIYFK----LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR----AGRVEDAYGL 323 (638)
Q Consensus 252 ~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 323 (638)
+.|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|..+
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999875 78899999999998 899999999999999875 66788888888886 8999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006614 324 FMNMLKEGCKPDIVLINNLINVLGR----AGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMK 399 (638)
Q Consensus 324 ~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~ 399 (638)
|++..+.| +...+..+...|.. .++.++|.++|++..+.+ +...
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a-------------------------- 293 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDG-------------------------- 293 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHH--------------------------
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHH--------------------------
Confidence 99998864 56677778888877 788999988888876543 2222
Q ss_pred hCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHc
Q 006614 400 ANGVLPSPFTYSILIDGFCKT-----NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAK---RYEAANELFLELKEY 471 (638)
Q Consensus 400 ~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~ 471 (638)
+..+...|... +++++|...+++..+.+ +...+..+...|...| +.++|.+.|++..+.
T Consensus 294 ----------~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 294 ----------QYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp ----------HHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred ----------HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 22233333333 67777777777777654 4456666666666545 677777777777765
Q ss_pred CCCCcHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCC
Q 006614 472 CGCSSARVYAVMIKHFGK----CGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR----AGMIDDAYSLLRRMEEDG 542 (638)
Q Consensus 472 ~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 542 (638)
.+...+..+...|.. .+++++|...|++..+.+ +...+..|...|.. .++.++|...|++..+.+
T Consensus 361 ---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 361 ---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp ---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 345666777777776 677888888888777754 45667777777776 778888888888887765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-16 Score=167.09 Aligned_cols=432 Identities=10% Similarity=0.075 Sum_probs=291.7
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 006614 148 IQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNC 227 (638)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 227 (638)
+++.++. .+-+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|.++|++++...
T Consensus 2 le~al~~-~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEE-NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHH-CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhh-CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 3444443 3557788888888 477899999999999998863 4478889999999999999999999999998864
Q ss_pred CCCHHHHHHHHHHH-HccCChHHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHH
Q 006614 228 FPDTVTYSALISAF-GKLGRDISAIR----LFDEMKEN-GLQP-TAKIYTTLVSIYFK---------LGEVEKALGLVQE 291 (638)
Q Consensus 228 ~~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~m~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~ 291 (638)
|+...|...+... ...|+.++|.+ +|+...+. |..| +...|...+....+ .|+++.|..+|++
T Consensus 77 -p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 77 -LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 6776777666533 34577777665 66666543 5443 46677777776654 6788888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH------HC
Q 006614 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME------AL 365 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~ 365 (638)
..+.........|..........|. .+...++. .+.+++..|..+++.+. +.
T Consensus 156 al~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~ 213 (530)
T 2ooe_A 156 GCVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDR 213 (530)
T ss_dssp HTTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 8873111112233322221111110 01111110 12234555555555421 11
Q ss_pred C---CCCC--------hhhHHHHHHHHHhc----CCh---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------c
Q 006614 366 Q---CKPN--------VVTYNTVIKSLFES----KAP---ASEASAWFEKMKANGVLPSPFTYSILIDGFCK-------T 420 (638)
Q Consensus 366 ~---~~p~--------~~~~~~ll~~~~~~----~~~---~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~ 420 (638)
. +.|+ ...|...+...... ++. ...+...|++.... .+.+...|..++..+.+ .
T Consensus 214 ~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~ 292 (530)
T 2ooe_A 214 NAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEK 292 (530)
T ss_dssp SSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhc
Confidence 1 1222 12344333222211 111 12234556666554 24467788888877775 6
Q ss_pred CCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHccCC
Q 006614 421 NRVE-------KAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSS-ARVYAVMIKHFGKCGR 492 (638)
Q Consensus 421 g~~~-------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 492 (638)
|+++ +|..++++..+.-.|.+...+..++..+.+.|++++|..+|+++.+.. +.+ ...|...+..+.+.|+
T Consensus 293 g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 293 GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcC
Confidence 8887 899999999873236678899999999999999999999999999852 223 3589999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006614 493 LSDAVDLFNEMKKLRCKPDVYTYNALMS-GMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 493 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
+++|..+|++..+.. +.+...|..... .+...|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|+
T Consensus 372 ~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 372 IKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 999999999998753 122222322222 2346899999999999998863 3368889999999999999999999999
Q ss_pred HhhhCC-CCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 572 KMQHSE-IKPD--AVSYNTILGCLSRAGMFEEAARLMKDMNAK 611 (638)
Q Consensus 572 ~m~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 611 (638)
+....+ ..|+ ...|...+....+.|+.+.+..+.+++.+.
T Consensus 450 ~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 450 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 998753 2332 457888888888899999999999998864
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-16 Score=163.81 Aligned_cols=424 Identities=12% Similarity=0.076 Sum_probs=278.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
|.+..+|..++. +.+.|++++|..+|+.+++. .|.+...|...+..+.+.|++++|..+|++.... .|++..|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 458889999998 47899999999999999885 4667889999999999999999999999999987 3688888877
Q ss_pred HHHH-HhcCCHhHHHH----HHHHHHhC-CCCCCCHHHHHHHHHHHHc---------cCChHHHHHHHHHHHHCCCCCCH
Q 006614 202 ILML-MQEGYYEKIHE----LYNEMCNE-GNCFPDTVTYSALISAFGK---------LGRDISAIRLFDEMKENGLQPTA 266 (638)
Q Consensus 202 ~~~~-~~~g~~~~A~~----~~~~~~~~-~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~ 266 (638)
+... -..|++++|.+ +|+..... |...++...|...+....+ .|+++.|..+|++..+.......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 7543 34677776665 77777653 3222456777777776654 68899999999999883111112
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHcC---CCCC--
Q 006614 267 KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM------LKEG---CKPD-- 335 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~---~~p~-- 335 (638)
..|..........|. .+...++. ...+++..|..++.+. .+.. +.|+
T Consensus 166 ~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp HHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred HHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 333322221100110 00011110 0123344444444431 1111 1222
Q ss_pred ------HHHHHHHHHHHHcc----CCH----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-------cCChH------
Q 006614 336 ------IVLINNLINVLGRA----GRL----EDALKLFNKMEALQCKPNVVTYNTVIKSLFE-------SKAPA------ 388 (638)
Q Consensus 336 ------~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~-------~~~~~------ 388 (638)
...|...+...... ++. ..+..+|+++.... +-+...|..+...+.. .|+..
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 23444444332221 122 35566666665532 1244555555555443 45544
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 389 SEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCP-AAYCSLINGYGKAKRYEAANELFLE 467 (638)
Q Consensus 389 ~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 467 (638)
+.+..+++.....-.+.+...|..++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.|++++|.++|++
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2336777776652234457788888888888899999999999988863 3343 5788888888888899999999999
Q ss_pred HHHcCCCCcHHHHHHHHHH-HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CC
Q 006614 468 LKEYCGCSSARVYAVMIKH-FGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGC-VP 545 (638)
Q Consensus 468 ~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p 545 (638)
..+.. +.+...|...+.. +...|++++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++.+..+. .|
T Consensus 382 Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 382 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 88753 2233333332222 346889999999999887753 33577888888888889999999999999988632 22
Q ss_pred --CHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 546 --DINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 546 --~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
....|...+......|+.+.+..+++++.+
T Consensus 460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 460 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 245787788888888999999999988875
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.6e-18 Score=164.66 Aligned_cols=296 Identities=10% Similarity=-0.027 Sum_probs=210.4
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHH
Q 006614 156 CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYS 235 (638)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 235 (638)
.+.++..+...+..+...|++++|..+|+++.+..+ .+...+..++..+...|++++|...++++.+..+ .+...+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~ 94 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYP--SNPVSWF 94 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSTHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHH
Confidence 345566777777777778888888888888776533 2555666677777888888888888888877664 4667777
Q ss_pred HHHHHHHccC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006614 236 ALISAFGKLG-RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA 314 (638)
Q Consensus 236 ~l~~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 314 (638)
.+...+...| ++++|.+.|+++.+.. +.+...|..+...+...|++++|.+.++++.+.... +...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 7888888888 8888888888887653 335677888888888888888888888888776543 455666688888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 006614 315 GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAW 394 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 394 (638)
|++++|...+++..+..+. +..++..+...+...|++++|...++++.+.... .++
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~-------- 228 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA---------------IGN-------- 228 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT---------------TSC--------
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh---------------ccc--------
Confidence 8888888888888876543 6778888888888888888888888877552100 000
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 006614 395 FEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474 (638)
Q Consensus 395 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (638)
....+.+...+..+..++...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.++++.+. .+
T Consensus 229 -----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p 301 (330)
T 3hym_B 229 -----EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-RR 301 (330)
T ss_dssp -----SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-CS
T ss_pred -----cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc-CC
Confidence 00112334567777777888888888888888877764 556667777777777777777777777776664 23
Q ss_pred CcHHHHHHHHHHH
Q 006614 475 SSARVYAVMIKHF 487 (638)
Q Consensus 475 ~~~~~~~~li~~~ 487 (638)
.+...+..+..++
T Consensus 302 ~~~~~~~~l~~~~ 314 (330)
T 3hym_B 302 DDTFSVTMLGHCI 314 (330)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHH
Confidence 3455566665555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-17 Score=163.93 Aligned_cols=294 Identities=11% Similarity=-0.016 Sum_probs=243.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 006614 121 FEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS 200 (638)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 200 (638)
.+.+...+..++..+...|++++|.++++++++.. +.+...+..++..+.+.|++++|...++++.+..+ .+...|..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHH
Confidence 34566678889999999999999999999998864 55667788888999999999999999999988643 37888999
Q ss_pred HHHHHHhcC-CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006614 201 MILMLMQEG-YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279 (638)
Q Consensus 201 l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (638)
+...+...| ++++|.+.|+++....+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEK--TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCT--TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 999999999 99999999999998775 567889999999999999999999999999864 33567788899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHccCC
Q 006614 280 GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG--------CKPDIVLINNLINVLGRAGR 351 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~g~ 351 (638)
|++++|.+.+++..+..+. +...+..+...+...|++++|...++++.+.. .+.+..++..+...+.+.|+
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 9999999999999987654 78899999999999999999999999998742 13346788899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006614 352 LEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLE 431 (638)
Q Consensus 352 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 431 (638)
+++|...+++..+.. +.+...+..+..++.+.|++++|...++
T Consensus 252 ~~~A~~~~~~a~~~~-------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 252 YAEALDYHRQALVLI-------------------------------------PQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HHHHHHHHHHHHHHS-------------------------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-------------------------------------ccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999999998876632 1234456667777888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHH-HccCCH
Q 006614 432 EMEEKGFPPCPAAYCSLINGY-GKAKRY 458 (638)
Q Consensus 432 ~~~~~~~~~~~~~~~~li~~~-~~~g~~ 458 (638)
+..+.. +.+...+..+..++ ...|+.
T Consensus 295 ~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 295 TALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 887765 56777777777777 455544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-14 Score=156.93 Aligned_cols=385 Identities=14% Similarity=0.128 Sum_probs=296.2
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHH
Q 006614 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRK--CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTY 234 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 234 (638)
..+|.--...+++|...|.+.+|+++++++...+ +.-+....+.++....+. +..+..+..++... .+ .
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-----~d---~ 1052 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-----YD---A 1052 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-----cc---H
Confidence 4466666788899999999999999999998432 123566777788777777 55666666666542 22 3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006614 235 SALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA 314 (638)
Q Consensus 235 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 314 (638)
..+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhC
Confidence 4477888899999999999998631 2223333332 7789999999998652 578899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 006614 315 GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAW 394 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 394 (638)
|++++|...|.+. -|...|..++.++.+.|++++|.+.+....+.. ++....+.+..+|.+.++..+. ..+
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleel-e~f 1189 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAEL-EEF 1189 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHH-HHH
Confidence 9999999999764 378889999999999999999999999887755 3433344578888888765532 333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 006614 395 FEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474 (638)
Q Consensus 395 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (638)
.. .++...|..+.+.|...|++++|..+|... ..|..+...+++.|++++|.+.+.+.
T Consensus 1190 ----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------ 1247 (1630)
T 1xi4_A 1190 ----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------ 1247 (1630)
T ss_pred ----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------
Confidence 22 356677888999999999999999999985 48999999999999999999999987
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006614 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 554 (638)
.+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++..+... +-....|+-+.
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELa 1321 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 1321 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHH
Confidence 356889999999999999999998776532 356667789999999999999999998888653 23455666666
Q ss_pred HHHHhc--CChHHHHHHHHHhhhCCCCC------CHHHHHHHHHHHHccCCHHHHHH
Q 006614 555 NGLAKS--GGPKRAMEIFTKMQHSEIKP------DAVSYNTILGCLSRAGMFEEAAR 603 (638)
Q Consensus 555 ~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~ 603 (638)
..+++. ++..++.++|..-. ++.| +...|.-++-.|.+.|+++.|..
T Consensus 1322 iLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 666554 46666666666443 3333 56779999999999999999983
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-17 Score=166.62 Aligned_cols=122 Identities=10% Similarity=-0.008 Sum_probs=76.8
Q ss_pred cCCCHHHHHH-HHHHhhhCCCC---CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006614 172 KAKMVNKALS-IFYQIKSRKCK---PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 172 ~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
-.|++++|.. .|++....... .+...+..+...+.+.|++++|+..|+++.+..+ .+...+..+...+...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCcCH
Confidence 3466777776 66655443211 1345566677777777777777777777777654 5666777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006614 248 ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG 296 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 296 (638)
++|+..++++.+.. +.+..++..+...+...|++++|.+.++++....
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 162 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT 162 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77777777777653 3366677777777777777777777777777654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-17 Score=165.51 Aligned_cols=305 Identities=10% Similarity=-0.015 Sum_probs=216.6
Q ss_pred ccCChHHHHH-HHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 243 KLGRDISAIR-LFDEMKENGL---QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE 318 (638)
Q Consensus 243 ~~g~~~~A~~-~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 318 (638)
..|++++|++ .+++..+... ..+...+..+...+.+.|++++|...++++.+..+. +...+..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHH
Confidence 3467777777 6665543311 113456777888888888888888888888877543 6778888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006614 319 DAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKM 398 (638)
Q Consensus 319 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m 398 (638)
+|...|+++.+..+. +..++..+...|...|++++|.+.++++.... |+........... . . .
T Consensus 116 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~------~-~-------~ 178 (368)
T 1fch_A 116 LAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG------A-G-------G 178 (368)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH------h-h-------h
Confidence 888888888877543 77788888888888888888888888887754 3322111100000 0 0 0
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 006614 399 KANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP--CPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSS 476 (638)
Q Consensus 399 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 476 (638)
..+ ...+..+.. +...|++++|...++++.+.. +. +..++..+...+...|++++|...++++.+. .+.+
T Consensus 179 ----~~~-~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~ 250 (368)
T 1fch_A 179 ----AGL-GPSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RPND 250 (368)
T ss_dssp ------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC
T ss_pred ----hcc-cHHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCC
Confidence 000 011112222 337889999999999988765 33 6788889999999999999999999998886 4456
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC----------C
Q 006614 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP----------D 546 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p----------~ 546 (638)
..++..+...+...|++++|...|+++.+.. +.+...+..+...|.+.|++++|...|+++.+..... .
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 7888999999999999999999999988763 4457788899999999999999999999888642111 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 006614 547 INSHNIILNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 547 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 574 (638)
..+|..+..++...|++++|..++++..
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 6789999999999999999998887544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-13 Score=149.69 Aligned_cols=442 Identities=10% Similarity=0.110 Sum_probs=302.2
Q ss_pred CChHHHHHHhccccchHHHHHHHHHhhhC--CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHH
Q 006614 90 VDHRLVHQVLNIDVEINVKIQFFKWAGRR--RNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTC--VMGPSVLSE 165 (638)
Q Consensus 90 ~~~~~~~~vl~~~~~~~~a~~~f~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 165 (638)
-++.+=..||.-.+ ..-.++.+|...- +. ..++.--...+++|...|++.+|+++++..+-.+- ..+....+.
T Consensus 951 ~d~~lW~~vl~~~n--~~RR~Lidqv~a~aL~e-~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqnl 1027 (1630)
T 1xi4_A 951 KDPELWGSVLLESN--PYRRPLIDQVVQTALSE-TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNL 1027 (1630)
T ss_pred cCHHHHHHHhcCCc--HHHHHHHHHHHHhhccc-ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHH
Confidence 44555555553322 3345677775321 11 23444445678889999999999999999884321 134566677
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC
Q 006614 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG 245 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 245 (638)
++....+. +..+......++... + ..-+...+...|.+++|..+|++.. -.....+.++. ..|
T Consensus 1028 Li~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~ 1090 (1630)
T 1xi4_A 1028 LILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIG 1090 (1630)
T ss_pred HHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHh
Confidence 77777766 556666666555432 2 3347788888999999999999862 12222333333 678
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006614 246 RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFM 325 (638)
Q Consensus 246 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 325 (638)
++++|.++.++. -+..+|..+..++.+.|++++|++.|.+. -|...|..++..+.+.|++++|.++|.
T Consensus 1091 nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~ 1158 (1630)
T 1xi4_A 1091 NLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 1158 (1630)
T ss_pred hHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 889999988855 25788889999999999999999999664 277888889999999999999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC
Q 006614 326 NMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLP 405 (638)
Q Consensus 326 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~ 405 (638)
...+... +....+.++.+|++.+++++..... + .++...|..+-..+...|+..+| ..+|...
T Consensus 1159 mArk~~~--e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA-~~~Y~kA------- 1221 (1630)
T 1xi4_A 1159 MARKKAR--ESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAA-KLLYNNV------- 1221 (1630)
T ss_pred HHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHH-HHHHHhh-------
Confidence 8877643 3333345888999998888644443 1 25666777777777777777766 6666664
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006614 406 SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIK 485 (638)
Q Consensus 406 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 485 (638)
..|..+..++++.|++++|.+.+++. .+..+|..+..+|...|++..|......+. .+...+..++.
T Consensus 1222 --~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~ 1288 (1630)
T 1xi4_A 1222 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELIN 1288 (1630)
T ss_pred --hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHH
Confidence 37889999999999999999999876 356888888888888888888887766432 35667778888
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHCCCCC------CHHHHHHHHHHH
Q 006614 486 HFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRA--GMIDDAYSLLRRMEEDGCVP------DINSHNIILNGL 557 (638)
Q Consensus 486 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~l~~~~ 557 (638)
.|.+.|.+++|+.+++...... +-....|+-+...|++. ++..++.++|..-.. ++| +...|.-+.-.|
T Consensus 1289 yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY 1365 (1630)
T 1xi4_A 1289 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLY 1365 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHH
Confidence 8999999999999998776553 33344565566666543 445555555554332 222 456788888888
Q ss_pred HhcCChHHHHHHHHHhhh-----------CCCCCCHHHHHHHHHHHHccC
Q 006614 558 AKSGGPKRAMEIFTKMQH-----------SEIKPDAVSYNTILGCLSRAG 596 (638)
Q Consensus 558 ~~~g~~~~A~~~~~~m~~-----------~~~~p~~~~~~~l~~~~~~~g 596 (638)
.+.|+++.|....-+-.. -.-..|+..|...+.-|...+
T Consensus 1366 ~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1366 DKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 888888888732222110 011345666666666665554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=183.05 Aligned_cols=151 Identities=18% Similarity=0.173 Sum_probs=117.3
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006614 476 SARVYAVMIKHFGKCGRLSDAVDLFNEMKK---LRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNI 552 (638)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 552 (638)
-..+|+++|++||+.|++++|..+|++|.+ .|+.||.+|||+||.+||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356788888888888888888888877754 47888999999999999999999999999999998899999999999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC------HHhHHHHHH
Q 006614 553 ILNGLAKSGGP-KRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYD------QITYSSILE 625 (638)
Q Consensus 553 l~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~l~~ 625 (638)
+|.++|+.|+. ++|.++|++|.+.|+.||..+|++++.+..+. .+++.++++ .-++.|+ ..|...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99998888874 67888999998888889998888887665554 444444444 3355555 445555666
Q ss_pred HHhccC
Q 006614 626 AVGKVD 631 (638)
Q Consensus 626 ~~~~~g 631 (638)
-+.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.1e-17 Score=156.58 Aligned_cols=379 Identities=12% Similarity=0.068 Sum_probs=156.4
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHH
Q 006614 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAI 251 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 251 (638)
+.|+.++|.++++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 4556677777777662 2346777777777777777777777442 45556777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006614 252 RLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 252 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 766655553 3456666777777777777777666663 245567777777777777777777777755
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 006614 332 CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYS 411 (638)
Q Consensus 332 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 411 (638)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+...+ ...... +...+....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA-~~~~l~-----L~~~ad~l~ 211 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA-QMCGLH-----IVVHADELE 211 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH-HHTTTT-----TTTCHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHH-HHHHHH-----HHhCHhhHH
Confidence 25677777777777777777777766 2567777777777777776655 222111 223444455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHcCCCC------cHHHHHHH
Q 006614 412 ILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKA--KRYEAANELFLELKEYCGCS------SARVYAVM 483 (638)
Q Consensus 412 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~l 483 (638)
.++..|.+.|++++|+.+++...... +.....|+-+.-+|++- ++..+..+.|..-. ++++ +...|..+
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHH
Confidence 68888999999999999999998776 66777888888888765 34555555554211 1222 35668899
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006614 484 IKHFGKCGRLSDAVDLFNEMKKLR-----------CKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNI 552 (638)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~~~-----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 552 (638)
...|...++++.|....-+-.... -..+...|-..+..|. +....++.-+...+... .|. +.
T Consensus 289 ~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~--ld~---~r 361 (449)
T 1b89_A 289 VFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPR--LDH---TR 361 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGG--CCH---HH
T ss_pred HHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhc--cCc---HH
Confidence 999999999998887443221100 0112333333344443 11111222222222111 111 22
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 553 ILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMK 606 (638)
Q Consensus 553 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 606 (638)
.+..+.+.|.+.-+..++..+...+ +...=.++-..|....+++.-..-++
T Consensus 362 ~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 362 AVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp HHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3445556666666666666655432 23333355556667777665444433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-16 Score=158.86 Aligned_cols=244 Identities=10% Similarity=-0.005 Sum_probs=159.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006614 265 TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLIN 344 (638)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 344 (638)
+...+..+...+.+.|++++|++.|+++.+..+. +...|..+...+...|++++|...|+++.+..+. +..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 4455777788888888888888888888776543 6778888888888888888888888888876543 6788888888
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 345 VLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVE 424 (638)
Q Consensus 345 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 424 (638)
.|...|++++|...++++.+.. |+........ ......+..+...+...|+++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNK-------------------------KGSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhh-------------------------ccchHHHHHHHHHHhhhhhHH
Confidence 9999999999999998887633 2211100000 012233455667778888888
Q ss_pred HHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 425 KAHLLLEEMEEKGFPP--CPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNE 502 (638)
Q Consensus 425 ~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (638)
+|...++++.+.. +. ++.++..+...+...|++++|.+.++++.+. .+.+..+|..+..+|...|++++|...|++
T Consensus 195 ~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 195 GVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888887764 33 5677777777777777777777777777665 334455666666666666666666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006614 503 MKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 503 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (638)
+.+.. +.+..++..+..+|...|++++|...|+++.+
T Consensus 273 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 273 ALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 65542 22355566666666666666666666666554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-16 Score=155.30 Aligned_cols=289 Identities=13% Similarity=0.146 Sum_probs=127.5
Q ss_pred HHHHhccccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 006614 95 VHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK 174 (638)
Q Consensus 95 ~~~vl~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (638)
+..++...++.+.|.+|++.. +.+.+|..++.++.+.|++++|++.|.+ .+|+..|..++..+...|
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCC
Confidence 444555667789999999844 2335999999999999999999999964 367889999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 006614 175 MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLF 254 (638)
Q Consensus 175 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 254 (638)
++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ + |+..+|..++..|...|++++|...|
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~---pn~~a~~~IGd~~~~~g~yeeA~~~Y 145 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-----G---PNNAHIQQVGDRCYDEKMYDAAKLLY 145 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-----C---C----------------CTTTHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----C---CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999977766664 4567889999999999999999998874 1 77789999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006614 255 DEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP 334 (638)
Q Consensus 255 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 334 (638)
..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .
T Consensus 146 ~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~ 205 (449)
T 1b89_A 146 NNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----V 205 (449)
T ss_dssp HHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----T
T ss_pred HHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----h
Confidence 976 47999999999999999999999988 288999999999999999999966655432 2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCC------CH
Q 006614 335 DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKA-NGVLP------SP 407 (638)
Q Consensus 335 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~-~~~~~------~~ 407 (638)
.+.-...++..|.+.|.+++|..+++...... +.....|+-+--.+.+- ++... .+.++.... -+++| +.
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~-~ehl~~~~~~ini~k~~~~~~~~ 282 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKM-REHLELFWSRVNIPKVLRAAEQA 282 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHH-HHHHHHHSTTSCHHHHHHHHHTT
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHH-HHHHHHHHHHhcCcHHHHHHHHH
Confidence 44445578999999999999999999987654 33445555554443332 22222 222222222 12222 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH
Q 006614 408 FTYSILIDGFCKTNRVEKAHLL 429 (638)
Q Consensus 408 ~~~~~li~~~~~~g~~~~A~~~ 429 (638)
..|..+...|.+.++++.|...
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHH
Confidence 5677888888888999888763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.4e-17 Score=159.80 Aligned_cols=278 Identities=10% Similarity=-0.052 Sum_probs=216.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...|..+...+.+.|++++|...++.+++.. +.+..++..+...+.+.|++++|+..|+++.+..+ .+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 44568899999999999999999999998864 66788999999999999999999999999988743 37889999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHH----------HHHHHHHHHccCChHHHHHHHHHHHHCCCC-CCHHHHHHH
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVT----------YSALISAFGKLGRDISAIRLFDEMKENGLQ-PTAKIYTTL 272 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l 272 (638)
.|...|++++|++.|+++.+..+ .+... +..+...+...|++++|++.++++.+.... ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNP--KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCH--HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCc--cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999988653 22222 334578889999999999999999886421 168899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 006614 273 VSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRL 352 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 352 (638)
...|...|++++|++.++++.+..+. +..+|..+...+...|++++|...|+++.+..+. +..++..+..+|.+.|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence 99999999999999999999887544 7889999999999999999999999999987543 688899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006614 353 EDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEE 432 (638)
Q Consensus 353 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 432 (638)
++|...|+++.+.. |+...- .. ......+...|..+..++...|+.+.+..+.++
T Consensus 298 ~~A~~~~~~al~~~--~~~~~~-------------~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQ--RKSRNQ-------------QQ----------VPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHH--HCC-----------------------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC--cccCCC-------------cc----------cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999987632 111000 00 000011345677777777778888777766654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-18 Score=181.31 Aligned_cols=119 Identities=17% Similarity=0.253 Sum_probs=109.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHH
Q 006614 510 PDVYTYNALMSGMVRAGMIDDAYSLLRRMEE---DGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYN 586 (638)
Q Consensus 510 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 586 (638)
.-..|||+||++||+.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3467999999999999999999999988764 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCH-HHHHHHHHHHHhCCCCCCHHhHHHHHHHHh
Q 006614 587 TILGCLSRAGMF-EEAARLMKDMNAKGFEYDQITYSSILEAVG 628 (638)
Q Consensus 587 ~l~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 628 (638)
++|.++++.|+. ++|.++|++|.+.|+.||..||++++.++.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 999999999984 789999999999999999999995544443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-15 Score=154.83 Aligned_cols=151 Identities=9% Similarity=-0.043 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHHcCChHHHHH
Q 006614 457 RYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVY--TYNALMS-GMVRAGMIDDAYS 533 (638)
Q Consensus 457 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~ 533 (638)
..++|...++...+. .+.+...+..+...|...|++++|...|++..+....+... .+..+.. .....|++++|+.
T Consensus 315 ~~~~A~~~~~~a~~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~ 393 (472)
T 4g1t_A 315 LIGHAVAHLKKADEA-NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393 (472)
T ss_dssp HHHHHHHHHHHHHHH-CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred hHHHHHHHHHHHhhc-CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 356777777777765 33445567778888888899999998888887764332211 2222222 2346788899999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-
Q 006614 534 LLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKG- 612 (638)
Q Consensus 534 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~- 612 (638)
.|++.++. .|+...... ..+.+.+++++....+ +.+..+|..+..+|...|++++|.+.|++.++.+
T Consensus 394 ~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 394 HFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99888875 344332221 2234455555555432 3356788889999999999999999999988743
Q ss_pred CCCCHHhH
Q 006614 613 FEYDQITY 620 (638)
Q Consensus 613 ~~p~~~~~ 620 (638)
..|+..+|
T Consensus 462 ~~p~a~~~ 469 (472)
T 4g1t_A 462 LIPSASSW 469 (472)
T ss_dssp --------
T ss_pred CCCcHhhc
Confidence 44554443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-15 Score=153.89 Aligned_cols=150 Identities=15% Similarity=0.015 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH--HHHHHHHH-HHHccCCHHHHHH
Q 006614 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSA--RVYAVMIK-HFGKCGRLSDAVD 498 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~-~~~~~g~~~~A~~ 498 (638)
.+++|...+++..+.. +.+..++..+...+...|++++|...|++..+....+.. ..+..+.. .+...|++++|+.
T Consensus 315 ~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~ 393 (472)
T 4g1t_A 315 LIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393 (472)
T ss_dssp HHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred hHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3566777777776654 556667777888888888888888888887775433221 12222222 2346788888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC-
Q 006614 499 LFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSE- 577 (638)
Q Consensus 499 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~- 577 (638)
.|++..+. .|+...... ....+..++++.++.. +.+..+|..+...|...|++++|++.|++..+.+
T Consensus 394 ~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 394 HFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 88888775 354332222 2234455566665543 3467788888888999999999999999888643
Q ss_pred CCCCHHH
Q 006614 578 IKPDAVS 584 (638)
Q Consensus 578 ~~p~~~~ 584 (638)
..|+..+
T Consensus 462 ~~p~a~~ 468 (472)
T 4g1t_A 462 LIPSASS 468 (472)
T ss_dssp -------
T ss_pred CCCcHhh
Confidence 3344443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-15 Score=149.05 Aligned_cols=152 Identities=11% Similarity=0.080 Sum_probs=85.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHH
Q 006614 311 LGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASE 390 (638)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 390 (638)
+...|++++|...++++.+..+. +..++..+...+.+.|++++|.+.++++.+..
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------------------ 202 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR------------------------ 202 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------
T ss_pred HHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------------------------
Confidence 45556666666666666655332 55566666666666666666666666554311
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 391 ASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 391 ~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+
T Consensus 203 -------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 203 -------------PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp -------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1233445555666666666666666666666543 44555666666666666666666666666554
Q ss_pred cCCCC-----------cHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 471 YCGCS-----------SARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 471 ~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
..... +...+..+..++.+.|++++|..+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 269 MQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred hCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 32211 34445555555555555555555544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-15 Score=145.64 Aligned_cols=252 Identities=12% Similarity=0.068 Sum_probs=141.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 006614 133 RCLDETRMIGVMWKSIQDMVRSTCVMGP--SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY 210 (638)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 210 (638)
+.....|+++.|+..++.... ..|+. .....+.++|...|++++|+..++.. .+|+..++..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 334456666666666655433 22222 23344566666666666666544331 23455566666666666666
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006614 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQ 290 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 290 (638)
.++|++.++++...+..+.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666666666665432113445555556666666666666666665 2456666666666666666666666666
Q ss_pred HHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 006614 291 EMKGKGCALTVYTY---TELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQC 367 (638)
Q Consensus 291 ~m~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 367 (638)
++.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.....
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 666553 222111 122233334466667777776666653 23666666666666667777777776666655431
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006614 368 KPNVVTYNTVIKSLFESKAPASEASAWFEKMKA 400 (638)
Q Consensus 368 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~ 400 (638)
-+..++..+...+...|+..+++..+++++.+
T Consensus 232 -~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 232 -GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp -TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 13444555555555555555444455555444
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-15 Score=148.94 Aligned_cols=277 Identities=9% Similarity=-0.021 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+...|++++|...++++++.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3467788889999999999999999988763 5578889999999999999999999999998874 3378889999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH--------------HH-HHHccCChHHHHHHHHHHHHCCCCCCHHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL--------------IS-AFGKLGRDISAIRLFDEMKENGLQPTAKIY 269 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 269 (638)
+...|++++|++.|+++.+..+ .+...+..+ .. .+...|++++|.+.++++.+.. +.+..++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQP--QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST--TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 9999999999999999998764 233333333 22 3677889999999999988764 3477888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 006614 270 TTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRA 349 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 349 (638)
..+...+.+.|++++|.+.++++.+..+. +...+..+...+...|++++|...++++.+..+. +..++..+...|.+.
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHh
Confidence 89999999999999999999998877543 6788888999999999999999999998887543 677888899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006614 350 GRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLL 429 (638)
Q Consensus 350 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 429 (638)
|++++|.+.++++.+.. |+.... ... .....+...+..+..++.+.|++++|..+
T Consensus 254 g~~~~A~~~~~~a~~~~--~~~~~~-------------~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQ--VGGTTP-------------TGE----------ASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp TCHHHHHHHHHHHHHHH--TTSCC----------------------------CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--Cccccc-------------ccc----------chhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999998876532 110000 000 00011345666777777888888888777
Q ss_pred HHHH
Q 006614 430 LEEM 433 (638)
Q Consensus 430 ~~~~ 433 (638)
+++.
T Consensus 309 ~~~~ 312 (327)
T 3cv0_A 309 YAQN 312 (327)
T ss_dssp TTCC
T ss_pred HHHH
Confidence 7643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-15 Score=142.54 Aligned_cols=250 Identities=14% Similarity=0.130 Sum_probs=127.1
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHH
Q 006614 170 LGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDIS 249 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 249 (638)
....|++..|+..+++.....+.........+.++|...|++++|+..++. .. .|+..++..+...+...|+.++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~--~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SS--APELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TS--CHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cC--ChhHHHHHHHHHHHcCCCcHHH
Confidence 344566666666666554432211123444455666666666666655433 11 1555566666666666666666
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 250 AIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 250 A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...|+++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666665554323 344455555666666666666666554 2345555555555555555555555555555
Q ss_pred HcCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC
Q 006614 329 KEGCKPDIVLI---NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLP 405 (638)
Q Consensus 329 ~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~ 405 (638)
+.. |+.... ...+..+...|++++|..+|+++.+. .+.
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-------------------------------------~p~ 198 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-------------------------------------CSP 198 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-------------------------------------SCC
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-------------------------------------CCC
Confidence 543 221100 11222222334444444444444331 123
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHH
Q 006614 406 SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEA-ANELFLELKE 470 (638)
Q Consensus 406 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~ 470 (638)
+...++.+..++.+.|++++|...+++..+.. |.++.++..++..+...|+.++ +.++++++.+
T Consensus 199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44445555555555555555555555555543 4455555555555555555443 3445555544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.5e-15 Score=134.16 Aligned_cols=195 Identities=14% Similarity=0.089 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
++..|..+...+.+.|++++|...++..++.. +.++..+..+...+.+.|++++|+..|++..+..+. +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 34455555555555555555555555555432 334455555555555555555555555555544322 4445555555
Q ss_pred HHHhc-----------CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006614 204 MLMQE-----------GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTL 272 (638)
Q Consensus 204 ~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 272 (638)
++.+. |++++|+..|++..+..+ .+...+..+...+...|++++|+..|++..+.. .+...+..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNP--RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 55555 555555555555444433 234444444444444444444444444444433 344444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006614 273 VSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFM 325 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 325 (638)
...|...|++++|+..+++..+..+. +...+..+...+...|++++|...|+
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 44444444444444444444443322 33444444444444444444444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-14 Score=135.04 Aligned_cols=226 Identities=10% Similarity=0.010 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC--C----HHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKP--T----ANTY 198 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~ 198 (638)
...|..+...+...|++++|...++..++.. .++.++..+..++...|++++|...|++..+..... + ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4678899999999999999999999999876 788999999999999999999999999987753221 2 6889
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006614 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
..+...+...|++++|++.|+++.... |+. ..+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH---RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC---chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 999999999999999999999999865 443 34666788999999999998863 3356788899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006614 279 LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKL 358 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 358 (638)
.|++++|.+.+++..+..+. +...+..+...+...|++++|...+++..+..+. +..++..+...+.+.|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999987654 7889999999999999999999999999987543 688899999999999999999999
Q ss_pred HHHHHHC
Q 006614 359 FNKMEAL 365 (638)
Q Consensus 359 ~~~~~~~ 365 (638)
+++..+.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998663
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-14 Score=131.73 Aligned_cols=200 Identities=16% Similarity=0.095 Sum_probs=164.2
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006614 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
++++..+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|+..|++..+..+ .+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTP--RYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHH
Confidence 567788889999999999999999999999887543 888999999999999999999999999999876 67888999
Q ss_pred HHHHHHcc-----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006614 237 LISAFGKL-----------GRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT 305 (638)
Q Consensus 237 l~~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 305 (638)
+...+... |++++|+..+++..+.. +.+...+..+...+...|++++|+..|++..+.+ .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 99999999 99999999999998863 3367889999999999999999999999999887 5888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 363 (638)
.+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|...+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999987554 77888899999999999999999888753
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-14 Score=145.75 Aligned_cols=376 Identities=14% Similarity=0.060 Sum_probs=162.2
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH---hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006614 167 VNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY---EKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
...+.+.|++++|..+|.+..+.| +..++..+...|...|+. ++|+++|++..+. +...+..+...+..
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHh
Confidence 334444555555555555554432 233333444444444544 5555555555432 22233333332322
Q ss_pred cC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006614 244 LG-----RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE---KALGLVQEMKGKGCALTVYTYTELIKGLGRAG 315 (638)
Q Consensus 244 ~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 315 (638)
.| +.++|...|++..+.| +...+..|...|...+..+ ++.+.+......| +...+..+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 22 4455555555555543 2224444444444433322 2333333333333 2334444555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 006614 316 RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG---RLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEAS 392 (638)
Q Consensus 316 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~ 392 (638)
.++++........+.-...+...+..+...|.+.| +.++|.+.|++..+.|.. +
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~---------------------- 212 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-T---------------------- 212 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-C----------------------
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-H----------------------
Confidence 44333333222222111112225666666666666 666666666666554421 1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HccCCHHHHHHHH
Q 006614 393 AWFEKMKANGVLPSPFTYSILIDGFCKT----NRVEKAHLLLEEMEEKGFPPCPAAYCSLING-Y--GKAKRYEAANELF 465 (638)
Q Consensus 393 ~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~ 465 (638)
...+..+...|... +++++|+..|++.. . .++..+..+... + ...++.++|.+.|
T Consensus 213 --------------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 213 --------------AQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp --------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred --------------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 11112222222221 45555555555554 2 233444444444 2 3455666666666
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHH
Q 006614 466 LELKEYCGCSSARVYAVMIKHFGKCG-----RLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR----AGMIDDAYSLLR 536 (638)
Q Consensus 466 ~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 536 (638)
++..+.| +...+..+...|. .| ++++|...|++.. . .+...+..|...|.. ..++++|...|+
T Consensus 275 ~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 275 DNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 6655543 3444445555554 33 6666666666555 2 244455555554444 236666777766
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 537 RMEEDGCVPDINSHNIILNGLAK----SGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 537 ~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
+..+.|. ......|...|.. ..+.++|..+|+...+.|. ++.......+......++.++|.++.++..
T Consensus 347 ~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 347 TAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 6666552 2233344444442 3366677777776666553 222222222222223344555666555544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-13 Score=126.85 Aligned_cols=202 Identities=9% Similarity=0.002 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+...|++++|.+.++++++.. +.+..++..+...+.+.|++++|...|+++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 4566677777777777777777777766542 34556666666666666666666666666655432 255666666666
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+...|++++|++.|+++...+..+.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666666511111234455555666666666666666666655542 2245555555556666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
|.+.++++.+... .+...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666655555432 24445555555555555555555555555554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-13 Score=123.78 Aligned_cols=200 Identities=10% Similarity=-0.019 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
.++..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++....+ .+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~ 85 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP--DSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CChHHHHHHHHH
Confidence 344444444444455555555554444432 12344455555555555555555555555554433 344455555555
Q ss_pred HHcc-CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 241 FGKL-GRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE 318 (638)
Q Consensus 241 ~~~~-g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 318 (638)
+... |++++|...++++.+.+..| +...+..+...+...|++++|.+.++++.+..+. +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 5555 55555555555555421112 2344555555555555555555555555544322 3555555555566666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 319 DAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 319 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
+|...++++.+..+..+...+..+...+...|+.+.|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666555543312444555555555556666666666655543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-13 Score=140.87 Aligned_cols=215 Identities=12% Similarity=0.104 Sum_probs=135.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH---HHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 006614 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMV---NKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
.+...+.+.|++++|.+.|+...+.| ++..+..+...|...|+. ++|...|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677788899999999999987765 344556666777777877 8999999988864 6667777777666
Q ss_pred hcC-----CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006614 207 QEG-----YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD---ISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 207 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
..| ++++|+..|++..+.+. ++ .+..|...|...+.. .++.+.+....+.| +...+..|...|..
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~--~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE--GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC--SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC--HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 655 78899999999988765 44 666677777665543 34555565555554 45677778888888
Q ss_pred cCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--
Q 006614 279 LGEV----EKALGLVQEMKGKGCALTVYTYTELIKGLGRAG---RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRA-- 349 (638)
Q Consensus 279 ~g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-- 349 (638)
.+.+ +++..+++..... +...+..+...|...| +.++|+..|++..+.|.. +...+..+...|...
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATL 228 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGG
T ss_pred CCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCC
Confidence 7754 4444444444332 3337788888888899 899999999999988754 666656677777655
Q ss_pred --CCHHHHHHHHHHHH
Q 006614 350 --GRLEDALKLFNKME 363 (638)
Q Consensus 350 --g~~~~A~~~~~~~~ 363 (638)
+++++|.++|++..
T Consensus 229 ~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA 244 (452)
T ss_dssp SSCCHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHc
Confidence 68889988888876
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-12 Score=121.84 Aligned_cols=224 Identities=13% Similarity=0.017 Sum_probs=197.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGK----AKMVNKALSIFYQIKSRKCKPTANTYN 199 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 199 (638)
++.++..+...+...|++++|...|+...+ +.++..+..+...+.. .+++++|...|++..+.+ +..++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 677888999999999999999999999888 4466788889999999 999999999999998875 788999
Q ss_pred HHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006614 200 SMILMLMQ----EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK----LGRDISAIRLFDEMKENGLQPTAKIYTT 271 (638)
Q Consensus 200 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 271 (638)
.+...|.. .+++++|++.|++..+.+ +...+..+...+.. .+++++|+..+++..+.+ +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 99999999 999999999999998863 67788888999988 999999999999999875 6778888
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006614 272 LVSIYFK----LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR----AGRVEDAYGLFMNMLKEGCKPDIVLINNLI 343 (638)
Q Consensus 272 li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 343 (638)
+...|.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 8888988 999999999999998874 56788888888988 999999999999999875 367788888
Q ss_pred HHHHc----cCCHHHHHHHHHHHHHCC
Q 006614 344 NVLGR----AGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 344 ~~~~~----~g~~~~A~~~~~~~~~~~ 366 (638)
..|.+ .+++++|.+.|++..+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 89988 899999999999988765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-13 Score=127.58 Aligned_cols=95 Identities=12% Similarity=0.128 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----HHHHHH
Q 006614 268 IYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK--PD----IVLINN 341 (638)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~~ 341 (638)
.+..+...+...|++++|.+.+++..+.. .+...+..+...+...|++++|...+++..+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444555555555555555555555444 34455555555555555555555555555443211 11 344555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 006614 342 LINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 342 li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
+...+...|++++|...++++..
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 55555555555555555555544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=6.8e-13 Score=124.07 Aligned_cols=211 Identities=10% Similarity=0.025 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006614 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
+..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++.+..+ .+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS--RNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHH
Confidence 4567788888999999999999999988764 33788899999999999999999999999988765 57788899999
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 240 AFGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE 318 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 318 (638)
.+...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+.... +...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998733334 5677888899999999999999999998887543 6788888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 006614 319 DAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTV 377 (638)
Q Consensus 319 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 377 (638)
+|...++++.+... .+...+..+...+.+.|+.++|.+.++.+.+.. |+...+..+
T Consensus 193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~ 248 (252)
T 2ho1_A 193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY--PGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSHHHHHH
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCCHHHHHH
Confidence 99999999887644 477788888899999999999999999998754 554444433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-13 Score=127.96 Aligned_cols=237 Identities=11% Similarity=0.011 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--CCHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMI 202 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~ 202 (638)
+..+......+...|++++|...+++.++.. +.+...+..+...+.+.|++++|+..|++..+.+.. ....+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3456677889999999999999999998853 445668889999999999999999999999884322 2244588999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEV 282 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 282 (638)
..+...|++++|++.|++..+..+ .+...+..+...+...|++++|++.+++..+.. +.+...+..+...+...+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDT--TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998775 567889999999999999999999999998763 44677788787344455699
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHccCCH
Q 006614 283 EKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR---VEDAYGLFMNMLKEG-CKPD------IVLINNLINVLGRAGRL 352 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~li~~~~~~g~~ 352 (638)
++|.+.++++.+..+. +...+..+...+...|+ +++|...+++..+.. ..|+ ..++..+...|.+.|++
T Consensus 159 ~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999887544 57788888888888888 888999888887642 1122 25778888999999999
Q ss_pred HHHHHHHHHHHHCC
Q 006614 353 EDALKLFNKMEALQ 366 (638)
Q Consensus 353 ~~A~~~~~~~~~~~ 366 (638)
++|.+.++++.+..
T Consensus 238 ~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 238 VKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-13 Score=128.84 Aligned_cols=202 Identities=10% Similarity=0.073 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
.+..|..+...+...|++++|...++++++.. +.+..++..+...+.+.|++++|...|+++.+... .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 45667777777788888888888888777642 44667777777777788888888888877766532 36677777777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
.+...|++++|.+.|+++.+..+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM--ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC--CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 77777888888888877777654 466677777777777777777777777776652 235666777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006614 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
+|.+.++++.+.... +..++..+...+...|++++|...++++.+..
T Consensus 177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 777777777665432 56666677777777777777777777776654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=5e-13 Score=131.75 Aligned_cols=245 Identities=10% Similarity=0.073 Sum_probs=206.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKM-VNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
...+|+.+..++.+.|++++|+..++.+++.. +-+..+|+.+..++.+.|+ +++|+..|+++.+..+. +...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 35788889999999999999999999999863 5678899999999999997 99999999999987554 889999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCC
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK-LGE 281 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~ 281 (638)
.++...|++++|+..|+++++..+ .+...|..+..++.+.|++++|+..++++++.. +-+...|+.+..++.+ .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP--~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDA--KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc--cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999886 688999999999999999999999999999874 3478899999999999 666
Q ss_pred HHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----
Q 006614 282 VEKA-----LGLVQEMKGKGCALTVYTYTELIKGLGRAG--RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG---- 350 (638)
Q Consensus 282 ~~~A-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---- 350 (638)
.++| ++.+++.+...+. +...|..+...+...| ++++|+..+.++ +. .+.+...+..+..+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 5888888887655 7888999888898888 689999999888 43 3346788889999998874
Q ss_pred -----CHHHHHHHHHHH-HHCCCCCChh-hHHHHH
Q 006614 351 -----RLEDALKLFNKM-EALQCKPNVV-TYNTVI 378 (638)
Q Consensus 351 -----~~~~A~~~~~~~-~~~~~~p~~~-~~~~ll 378 (638)
..++|.++++++ .+.. |... .|..+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D--P~r~~~w~~~~ 360 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD--TIRKEYWRYIG 360 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC--GGGHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC--chhHHHHHHHH
Confidence 258999999998 5533 5443 343333
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-10 Score=123.02 Aligned_cols=230 Identities=12% Similarity=0.055 Sum_probs=163.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 392 SAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAH-LLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 392 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
..++++.... ++-+...|...+..+...|+.++|. .+|++.... +|.+...+...+...-+.|++++|.++|+.+..
T Consensus 329 ~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 329 TYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445555443 3446777888888888888888886 999988875 366777778888888889999999999998876
Q ss_pred cC----------CCC-----------cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc-CC
Q 006614 471 YC----------GCS-----------SARVYAVMIKHFGKCGRLSDAVDLFNEMKKL-RCKPDVYTYNALMSGMVRA-GM 527 (638)
Q Consensus 471 ~~----------~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~-g~ 527 (638)
.. .+. ...+|...+....+.|+.+.|..+|.+..+. + ......|...+..-.+. ++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCC
Confidence 41 111 2346777788778889999999999998875 2 11222332222222233 45
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHH
Q 006614 528 IDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKP--DAVSYNTILGCLSRAGMFEEAARLM 605 (638)
Q Consensus 528 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 605 (638)
.+.|..+|+..++. .+-+...+...+......|+.+.|..+|++.......+ ....|...+.--.+.|+.+.+.++.
T Consensus 486 ~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 486 TKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 89999999999886 34466777788888888999999999999988753211 3467888888888899999999999
Q ss_pred HHHHhCCCCCCHHhHHHHHHHH
Q 006614 606 KDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 606 ~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
+++.+. .|+......+.+-|
T Consensus 565 ~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 565 KRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHh--CCCCcHHHHHHHHh
Confidence 999875 34444445555444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-12 Score=120.21 Aligned_cols=207 Identities=14% Similarity=-0.012 Sum_probs=179.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+.+..+|..+...+...|++++|.+.++.+++.. +.+..++..+...+...|++++|...|+++.+... .+...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHH
Confidence 3457789999999999999999999999998853 55688999999999999999999999999987643 378899999
Q ss_pred HHHHHhc-CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006614 202 ILMLMQE-GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 202 ~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
...+... |++++|.+.|+++.+.+..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 9999999 99999999999999832221346788999999999999999999999998864 346888999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006614 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
++++|.+.++++.+..+..+...+..+...+...|+.++|..+++.+.+..
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999999999999887552477788888888999999999999999988753
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-13 Score=124.70 Aligned_cols=203 Identities=14% Similarity=0.111 Sum_probs=161.9
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH
Q 006614 158 MGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL 237 (638)
Q Consensus 158 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 237 (638)
..+..+..+...+...|++++|...|+++.+... .+...+..+...+...|++++|++.|+++.+..+ .+...+..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l 97 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDS--SAATAYYGA 97 (243)
T ss_dssp ---------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--cchHHHHHH
Confidence 4556788888899999999999999999988643 3788999999999999999999999999998765 678889999
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 238 ISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRV 317 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 317 (638)
...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.... +...+..+...+...|++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998864 447888999999999999999999999999887543 788899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006614 318 EDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 318 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
++|...++++.+.... +..++..+...|.+.|++++|.+.++++.+..
T Consensus 176 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999887543 68889999999999999999999999998754
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-13 Score=130.28 Aligned_cols=247 Identities=11% Similarity=0.006 Sum_probs=168.1
Q ss_pred ccchHHHHHHHHHhhhCCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 006614 102 DVEINVKIQFFKWAGRRRNF--EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 179 (638)
.++.+.|+..|..+...... +.+..+|..+..++...|++++|...++.+++.. +.++.++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 45667788888877654221 1246778888888888888888888888887753 45677888888888888888888
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 180 LSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
...|+++.+..+ .+...+..+...|.+.|++++|.+.|+++.+..+ +......++..+...|++++|...+++...
T Consensus 97 ~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP---NDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888877633 2677788888888888888888888888887653 333344444455666888888888877766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006614 260 NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL---TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDI 336 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 336 (638)
.. +++...+ .++..+...++.++|.+.+++........ +...+..+...+.+.|++++|...|++..+..+. +.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~ 249 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NF 249 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH
Confidence 42 3343333 36667777777888888887776543211 1456777777788888888888888887765422 22
Q ss_pred HHHHHHHHHHHccCCHHHHHHHH
Q 006614 337 VLINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 337 ~~~~~li~~~~~~g~~~~A~~~~ 359 (638)
.....++...|++++|.+.+
T Consensus 250 ---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 ---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHHhhHHHH
Confidence 22244555666666666554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-12 Score=122.29 Aligned_cols=255 Identities=12% Similarity=0.077 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC--HHHHHHH
Q 006614 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD--TVTYSAL 237 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l 237 (638)
+..+......+...|++++|+..|+++.+..+. +...+..+...+...|++++|++.|+++...... ++ ...|..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA-TKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCT-TTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCc-hhHHHHHHHHH
Confidence 445556667777777888888888777766432 4556777777777778888888877777763211 22 2346777
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 238 ISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRV 317 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 317 (638)
...+...|++++|++.+++..+.. +.+..++..+...|...|++++|.+.+++..+..+. +...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777653 235567777777777777777777777777665332 555666666233344477
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcCChHHHHHH
Q 006614 318 EDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR---LEDALKLFNKMEALQC-KPNVVTYNTVIKSLFESKAPASEASA 393 (638)
Q Consensus 318 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~~~~~ 393 (638)
++|...|+++.+..+. +...+..+...+...|+ +++|...++++.+... .|+.. .
T Consensus 159 ~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~----------------~---- 217 (272)
T 3u4t_A 159 VKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY----------------K---- 217 (272)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG----------------H----
T ss_pred HHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc----------------h----
Confidence 7777777777765433 45566666666666666 5666666665543110 00000 0
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006614 394 WFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLIN 450 (638)
Q Consensus 394 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 450 (638)
..-...|..+...|.+.|++++|...+++..+.. |.+......+..
T Consensus 218 ----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~ 263 (272)
T 3u4t_A 218 ----------DELIEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKM 263 (272)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred ----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhh
Confidence 0012356667777888888888888888887765 555555554443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-12 Score=127.50 Aligned_cols=197 Identities=9% Similarity=0.074 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006614 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY-YEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
..++..+...+.+.|++++|+..|+++.+..+. +...|+.+..++...|+ +++|+..|++++...+ .+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P--~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP--KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC--CCHHHHHHHH
Confidence 456777777888888888888888888776433 67788888888888886 8888888888888765 5677788888
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCH
Q 006614 239 SAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR-AGRV 317 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~ 317 (638)
..+...|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..++++++.++. +...|+.+...+.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 88888888888888888887753 336677777777777788888888888877776654 67777777777777 5554
Q ss_pred HHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHH
Q 006614 318 EDA-----YGLFMNMLKEGCKPDIVLINNLINVLGRAG--RLEDALKLFNKM 362 (638)
Q Consensus 318 ~~A-----~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~ 362 (638)
++| +..|++.++..+. +...|+.+...+.+.| ++++|.+.+.++
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 666 3666666665443 5566666666666655 355555554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-13 Score=127.60 Aligned_cols=225 Identities=13% Similarity=0.032 Sum_probs=169.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 135 LDETRMIGVMWKSIQDMVRSTC---VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211 (638)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (638)
+...|++++|+..++++++... +.+..++..+...+...|++++|...|+++.+..+ .+..+|..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCH
Confidence 3446788899999998887532 12456788888888899999999999998887643 3688888888999999999
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006614 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
++|++.|+++.+..+ .+...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++
T Consensus 94 ~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 94 DAAYEAFDSVLELDP--TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCc--cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999888765 56778888888888999999999999988875 35544444555556777889999988877
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006614 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP---DIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
....... +...+ .++..+...++.++|...+++..+..... +..++..+...|.+.|++++|...|+++....
T Consensus 170 ~~~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 170 HFEKSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHhcCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 7765432 33333 36667777888888888888876543211 14677788888888888888888888887643
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.1e-11 Score=113.42 Aligned_cols=224 Identities=15% Similarity=0.008 Sum_probs=162.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006614 335 DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILI 414 (638)
Q Consensus 335 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li 414 (638)
+..++..+...|...|++++|.+.|++..+. .+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---------------------------------------~~~~a~~~lg 45 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---------------------------------------KENSGCFNLG 45 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---------------------------------------TCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---------------------------------------CCHHHHHHHH
Confidence 4556666666677777777777777665541 1233444555
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006614 415 DGFCK----TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGK----AKRYEAANELFLELKEYCGCSSARVYAVMIKH 486 (638)
Q Consensus 415 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 486 (638)
..+.. .+++++|...|++..+.+ ++..+..+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 46 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 119 (273)
T 1ouv_A 46 VLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGI 119 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHH
Confidence 56666 777788888887777765 56777777777777 788888888888777763 56677777777
Q ss_pred HHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006614 487 FGK----CGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR----AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA 558 (638)
Q Consensus 487 ~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 558 (638)
|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.
T Consensus 120 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 120 YHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYH 193 (273)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 777 788888888888887764 55666777777777 788888888888888764 5667777778888
Q ss_pred h----cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCC
Q 006614 559 K----SGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSR----AGMFEEAARLMKDMNAKG 612 (638)
Q Consensus 559 ~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 612 (638)
. .+++++|...|++..+.+ +...+..+...|.+ .|++++|.+.+++..+.|
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8 888888888888887653 26667777778877 888888888888887654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.4e-10 Score=117.65 Aligned_cols=414 Identities=8% Similarity=0.043 Sum_probs=230.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHhhhCC-CCCCHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKM---VNKALSIFYQIKSRK-CKPTANT 197 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~ 197 (638)
+.|..+|..+++.+.+.+.++.+..+|+.++.. .+.....|...+..-.+.|+ ++.+..+|++..... ..|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 468999999999999999999999999999886 57788899999999888888 999999999998873 1378999
Q ss_pred HHHHHHHHHhcCCH--------hHHHHHHHHHHhC-CC-CCCCHHHHHHHHHHHHc---------cCChHHHHHHHHHHH
Q 006614 198 YNSMILMLMQEGYY--------EKIHELYNEMCNE-GN-CFPDTVTYSALISAFGK---------LGRDISAIRLFDEMK 258 (638)
Q Consensus 198 ~~~l~~~~~~~g~~--------~~A~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~m~ 258 (638)
|...+....+.+.. +.+.++|+..+.. |. ...+...|...+..... .++++.+..+|+.++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 98888776665543 3455788887653 32 22345677777765442 345677888999888
Q ss_pred HCCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHhC--CCC---------------C-----C---
Q 006614 259 ENGLQPTAKIYTTLVSIYFK-------------LGEVEKALGLVQEMKGK--GCA---------------L-----T--- 300 (638)
Q Consensus 259 ~~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~--~~~---------------~-----~--- 300 (638)
......-..+|......--. ..+++.|...+.++... ++. | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 63221112333222111100 11233344444332210 110 0 0
Q ss_pred HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHHCCCCCChh
Q 006614 301 VYTYTELIKGLGRAG-------RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDAL-KLFNKMEALQCKPNVV 372 (638)
Q Consensus 301 ~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~ 372 (638)
...|...+..--..+ ..+....+|++.+...+. +...|...+..+...|+.++|. ++|++.... ++.+..
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~ 379 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHH
Confidence 123333333222211 012234456665554222 5556666666666666666664 666666542 222333
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 006614 373 TYNTVIKSLFESKAPASEASAWFEKMKANG---------VLPS------------PFTYSILIDGFCKTNRVEKAHLLLE 431 (638)
Q Consensus 373 ~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~ 431 (638)
.|-..+...-..++.+.+ ..+|+.+.... -.|+ ...|...+....+.|..+.|..+|.
T Consensus 380 Lwl~~a~~ee~~~~~e~a-R~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEI-ETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHTTCHHHH-HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHH-HHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444455554433 55555554321 0021 1245555555555666666666666
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006614 432 EMEEK-GFPPCPAAYCSLINGYGKA-KRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCK 509 (638)
Q Consensus 432 ~~~~~-~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 509 (638)
...+. + ......|...+..-.+. ++.+.|..+|+...+. .+.+...+...+......|+.+.|..+|++.......
T Consensus 459 ~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 459 KCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 66554 2 12223333333322233 3366666666666655 3344555555566555666666666666666554311
Q ss_pred C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006614 510 P--DVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 510 p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (638)
+ ....|...+..-.+.|+.+.+..+.+++.+.
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 2344555555555666666666666666654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.5e-12 Score=127.04 Aligned_cols=246 Identities=18% Similarity=0.072 Sum_probs=139.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CH
Q 006614 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD--TVTYSALISAFGKLGRDISAIRLFDEMKEN----GLQP-TA 266 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~ 266 (638)
....+......+...|++++|+..|+++.+..+..+. ...+..+...+...|++++|...+++..+. +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 4444555556666666666666666666655431111 234555566666666666666666654322 1111 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 006614 267 KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA-LT----VYTYTELIKGLGRAGR--------------------VEDAY 321 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~ 321 (638)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 45666666777777777777776665542100 11 3466667777777777 77777
Q ss_pred HHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 006614 322 GLFMNMLKE----GCKP-DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFE 396 (638)
Q Consensus 322 ~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~ 396 (638)
..+++..+. +..| ...++..+...|...|++++|...+++..+.. -..++...
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~~------- 225 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA---------------KEFGDKAA------- 225 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH---------------HHTTCHHH-------
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH---------------HhcCCcHH-------
Confidence 777766542 1111 13466777778888888888888887765411 00111000
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 397 KMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGF-PPC----PAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 397 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
...++..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|...+++..+
T Consensus 226 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 226 ---------ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp ---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 123566677778888888888888877654210 011 33455555566666666666666655543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=5.4e-11 Score=114.68 Aligned_cols=220 Identities=15% Similarity=0.130 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------cCCCH-------HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 006614 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILG-------KAKMV-------NKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
++|...|++++.. .+.++..|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5677778777764 3567777877777765 35775 8888888888873123367788888888888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFPDTV-TYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYF-KLGEVEKA 285 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A 285 (638)
.|++++|.++|+++++..+ .+.. .|..++..+.+.|++++|..+|++..+.. +.+...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIED--IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSS--SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhccc--cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999999888653 2333 78888888888888999999998888764 234455544443322 36889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 286 LGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG-CKP--DIVLINNLINVLGRAGRLEDALKLFNKM 362 (638)
Q Consensus 286 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 362 (638)
.++|+...+..+. +...|..++..+.+.|++++|..+|++.++.. ..| ....|..++..+.+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999888776443 67788888888888899999999999888863 343 4667888888888889999998888888
Q ss_pred HHCC
Q 006614 363 EALQ 366 (638)
Q Consensus 363 ~~~~ 366 (638)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-12 Score=128.42 Aligned_cols=302 Identities=12% Similarity=0.044 Sum_probs=167.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHH
Q 006614 300 TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPD----IVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYN 375 (638)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 375 (638)
....+......+...|++++|...|+++.+.+.. + ..++..+...|...|++++|...+++.....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------- 77 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA--------- 77 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---------
Confidence 4445555566666666777777666666665322 2 2456666667777777777777776654310
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHH
Q 006614 376 TVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGF-PPC----PAAYCSLIN 450 (638)
Q Consensus 376 ~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~ 450 (638)
-..++.. .....+..+...+...|++++|...+++..+... ..+ ..++..+..
T Consensus 78 ------~~~~~~~----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 78 ------RTIGDQL----------------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135 (406)
T ss_dssp ------HHTTCHH----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HhccccH----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 0000000 0122344455556666666666666665543210 011 235555666
Q ss_pred HHHccCC--------------------HHHHHHHHHHHHHc----CC-CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 451 GYGKAKR--------------------YEAANELFLELKEY----CG-CSSARVYAVMIKHFGKCGRLSDAVDLFNEMKK 505 (638)
Q Consensus 451 ~~~~~g~--------------------~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (638)
.+...|+ +++|.+.+.+..+. +. +....++..+...|...|++++|...+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666666 66666666655432 10 11134566666677777777777777766543
Q ss_pred CCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 506 LRC-KPD----VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCV-PD----INSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 506 ~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
... .++ ..++..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 011 235666677777777777777777776642100 11 44566677777777777777777777654
Q ss_pred C----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHhccCCc
Q 006614 576 S----EIKP-DAVSYNTILGCLSRAGMFEEAARLMKDMNAK----GFEY-DQITYSSILEAVGKVDED 633 (638)
Q Consensus 576 ~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~ 633 (638)
. +-.+ ...++..+..+|.+.|++++|.+.+++..+. +..+ ...++..+...+...|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 1 1111 1445666777777777777777777775542 1111 123455555666555554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-11 Score=125.33 Aligned_cols=280 Identities=14% Similarity=0.031 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHhhhC----C-CCCCH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP----SVLSEIVNILGKAKMVNKALSIFYQIKSR----K-CKPTA 195 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~ 195 (638)
...+..+...+...|++++|...++++++.. +.++ .++..+...+...|++++|...|++..+. + .....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3455667788899999999999999998863 3333 47888889999999999999999887653 1 12245
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC----CCCCHHHHHHHHHHHHccCC-----------------hHHHHHHH
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGN----CFPDTVTYSALISAFGKLGR-----------------DISAIRLF 254 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~ 254 (638)
.++..+...|...|++++|.+.|++...... ......++..+...+...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 6788889999999999999999998776421 11234578888889999999 89999888
Q ss_pred HHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 006614 255 DEMKEN----GLQ-PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA-LT----VYTYTELIKGLGRAGRVEDAYGLF 324 (638)
Q Consensus 255 ~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~ 324 (638)
++..+. +.. ....++..+...|...|++++|++.+++..+.... .+ ...+..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 876542 111 12347788888999999999999999887654211 12 236778888899999999999999
Q ss_pred HHHHHcCCC-----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006614 325 MNMLKEGCK-----PDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMK 399 (638)
Q Consensus 325 ~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~ 399 (638)
++..+.... ....++..+...|...|++++|...+++..... -..++..
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~----------- 340 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA---------------QELGDRI----------- 340 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHTCHH-----------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------------HHCCChH-----------
Confidence 888764211 114567788888899999999999888875411 0001100
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006614 400 ANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK 436 (638)
Q Consensus 400 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 436 (638)
....++..+...|...|++++|...+++..+.
T Consensus 341 -----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 341 -----GEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 01335667778888899999999988887764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.8e-12 Score=126.74 Aligned_cols=236 Identities=17% Similarity=0.046 Sum_probs=120.2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHC----CC-CCCHHHHHHH
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDT----VTYSALISAFGKLGRDISAIRLFDEMKEN----GL-QPTAKIYTTL 272 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~l 272 (638)
...+...|++++|+..|+++.+..+ .+. ..+..+...+...|++++|...+++..+. +. +....++..+
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAGT--EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcc--cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3344444444444444444444332 111 23444444444444444444444443321 00 1123344555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHc
Q 006614 273 VSIYFKLGEVEKALGLVQEMKGK----G-CALTVYTYTELIKGLGRAGR-----------------VEDAYGLFMNMLKE 330 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~~~~ 330 (638)
...|...|++++|.+.+++..+. + ......++..+...+...|+ +++|...+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55555555555555555554432 0 01123355556666666666 66666666655432
Q ss_pred ----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC
Q 006614 331 ----GC-KPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLP 405 (638)
Q Consensus 331 ----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~ 405 (638)
+. .....++..+...|...|++++|.+.+++..+.. -..++...
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~~---------------- 261 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA---------------REFGDRAA---------------- 261 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHTCHHH----------------
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH---------------HhcCCcHH----------------
Confidence 11 1123466777788888888888888888765411 00011000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 406 SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGF--P---PCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 406 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
....+..+...+...|++++|...+++..+... . ....++..+...+...|++++|...+++...
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 123566677778888888888888877664310 0 1133455555556666666666665555443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-11 Score=108.78 Aligned_cols=165 Identities=16% Similarity=0.133 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006614 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 274 (638)
...|..+...|.+.|++++|++.|++.++..+ .+...+..+...+.+.|++++|+..++...... +.+...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP--NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34444444444444444444444444444433 344444444444444444444444444444332 123344444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006614 275 IYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLED 354 (638)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 354 (638)
.+...++++.|.+.+.+.....+. +...+..+...+.+.|++++|+..|++..+..+. +..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 444555555555555544443322 3444445555555555555555555555544322 44455555555555555555
Q ss_pred HHHHHHHHHH
Q 006614 355 ALKLFNKMEA 364 (638)
Q Consensus 355 A~~~~~~~~~ 364 (638)
|.+.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-11 Score=108.72 Aligned_cols=166 Identities=10% Similarity=0.067 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
++.+|..+..++.+.|++++|++.|++.++.. +-++.++..+..++.+.|++++|...+.+....... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 34445555555555555555555555554432 334444455555555555555555555544443221 3444444444
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
.+...++++.|.+.+++.....+ .+...+..+...+.+.|++++|++.|++..+.. +.+..+|..+...|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT--VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 44455555555555555444433 334444444444444444444444444444432 123444444444444444444
Q ss_pred HHHHHHHHHHh
Q 006614 284 KALGLVQEMKG 294 (638)
Q Consensus 284 ~A~~~~~~m~~ 294 (638)
+|++.|++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44444444443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-11 Score=115.39 Aligned_cols=221 Identities=6% Similarity=-0.010 Sum_probs=180.7
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006614 106 NVKIQFFKWAGRRRNFEHNSTTYMALIRCLDE-------TRMI-------GVMWKSIQDMVRSTCVMGPSVLSEIVNILG 171 (638)
Q Consensus 106 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (638)
+.|+..|+.+.... +.++..|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 46777888776644 5688899988888763 5886 899999999988423556779999999999
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HccCChHH
Q 006614 172 KAKMVNKALSIFYQIKSRKCKPTAN-TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF-GKLGRDIS 249 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 249 (638)
+.|++++|..+|++..+..+. +.. .|..++..+.+.|++++|..+|++..+..+ ++...|....... ...|+.++
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--CCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999986332 344 899999999999999999999999998765 4444554443332 23699999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006614 250 AIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG-CAL--TVYTYTELIKGLGRAGRVEDAYGLFMN 326 (638)
Q Consensus 250 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 326 (638)
|.++|++..+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998763 3478899999999999999999999999999863 344 567889999999999999999999999
Q ss_pred HHHcCC
Q 006614 327 MLKEGC 332 (638)
Q Consensus 327 ~~~~~~ 332 (638)
+.+..+
T Consensus 267 a~~~~p 272 (308)
T 2ond_A 267 RFTAFR 272 (308)
T ss_dssp HHHHTT
T ss_pred HHHHcc
Confidence 988643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-12 Score=124.24 Aligned_cols=237 Identities=14% Similarity=0.030 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhhhC----CC-CCCHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG----PSVLSEIVNILGKAKMVNKALSIFYQIKSR----KC-KPTAN 196 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~ 196 (638)
..+......+...|++++|...++++++.. +.+ ..++..+...+...|++++|...+++..+. +. .....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 345566777888888888888888887753 223 356777888888888888888888776442 11 11355
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCC--------------------hHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD----TVTYSALISAFGKLGR--------------------DISAIR 252 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~ 252 (638)
++..+...+...|++++|.+.+++..+..+..++ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 6777788888888888888888887653221122 3366777777777777 777777
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHH
Q 006614 253 LFDEMKEN----GLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGC-----ALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 253 ~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
.+++..+. +..+ ...++..+...+...|++++|.+.+++..+... .....++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77665432 1111 233566666677777777777777766653210 0012255556666666666666666
Q ss_pred HHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 323 LFMNMLKEGCK-PD----IVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 323 ~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 363 (638)
.+++..+.... .+ ..++..+...+...|++++|...+++..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 66665542110 01 3345555666666666666666666553
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.2e-12 Score=128.41 Aligned_cols=215 Identities=11% Similarity=0.023 Sum_probs=151.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006614 141 IGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMV-NKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYN 219 (638)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 219 (638)
++++...+++.... .+.+...+..+...+...|++ ++|+..|++..+..+. +...|..+...|.+.|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555566555443 244667777777777777777 7777777777665322 56777777777777777777777777
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHcc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCH
Q 006614 220 EMCNEGNCFPDTVTYSALISAFGKL---------GRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL--------GEV 282 (638)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~ 282 (638)
+..+.. |+...+..+...+... |++++|++.+++..+.. +.+...|..+..+|... |++
T Consensus 162 ~al~~~---p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTHC---KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTTC---CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhhC---CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 777755 5567777777777777 77777777777777653 33567777777777777 778
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 283 EKALGLVQEMKGKGCA--LTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 360 (638)
++|++.|++..+..+. -+...|..+...|...|++++|...|++..+..+. +...+..+...+...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888877775431 26777777888888888888888888887776443 56667777777777777777776554
Q ss_pred HH
Q 006614 361 KM 362 (638)
Q Consensus 361 ~~ 362 (638)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.1e-12 Score=122.94 Aligned_cols=237 Identities=19% Similarity=0.095 Sum_probs=119.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHH
Q 006614 200 SMILMLMQEGYYEKIHELYNEMCNEGNCFPD----TVTYSALISAFGKLGRDISAIRLFDEMKEN----GLQP-TAKIYT 270 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~ 270 (638)
.....+...|++++|+..|+++.+..+ .+ ...+..+...+...|++++|.+.+++..+. +..+ ...++.
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 334445555555555555555555432 12 234445555555555555555555544321 1111 233455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 006614 271 TLVSIYFKLGEVEKALGLVQEMKGKGC-ALT----VYTYTELIKGLGRAGR--------------------VEDAYGLFM 325 (638)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~ 325 (638)
.+...+...|++++|.+.+++..+... .++ ..++..+...+...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 556666666666666666655543210 011 2355555666666666 666666665
Q ss_pred HHHHc----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006614 326 NMLKE----GCK-PDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKA 400 (638)
Q Consensus 326 ~~~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~ 400 (638)
+..+. +.. ....++..+...+...|++++|...+++..+.. -..++..
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------------~~~~~~~------------ 220 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA---------------KEFGDKA------------ 220 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------HHHTCHH------------
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH---------------HhcCChH------------
Confidence 55431 111 113356666777777777777777777664310 0000000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 401 NGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGF-PPC----PAAYCSLINGYGKAKRYEAANELFLELK 469 (638)
Q Consensus 401 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 469 (638)
....++..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|...+++..
T Consensus 221 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 221 ----AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp ----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 0123455666777777788877777776653210 011 2344444555555555555555554443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.1e-12 Score=128.46 Aligned_cols=215 Identities=10% Similarity=-0.042 Sum_probs=187.3
Q ss_pred chHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 006614 104 EINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMI-GVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 104 ~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
..+.+++.+....... +.+...|..+..++...|++ ++|.+.+++.++.. +.+..++..+..+|.+.|++++|...
T Consensus 83 ~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3556677776554433 46889999999999999999 99999999998863 55688999999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhc---------CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc--------C
Q 006614 183 FYQIKSRKCKPTANTYNSMILMLMQE---------GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL--------G 245 (638)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g 245 (638)
|++..+. .|+...+..+...|... |++++|++.|++..+..+ .+...|..+...+... |
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV--LDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhhccccc
Confidence 9999987 46678999999999999 999999999999999876 6788999999999998 9
Q ss_pred ChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006614 246 RDISAIRLFDEMKENGLQ---PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 246 ~~~~A~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
++++|++.|++..+.. + .+...|..+...|...|++++|.+.|++..+..+. +...+..+...+...|++++|..
T Consensus 236 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999863 2 37889999999999999999999999999987654 67788899999999999999988
Q ss_pred HHHHH
Q 006614 323 LFMNM 327 (638)
Q Consensus 323 ~~~~~ 327 (638)
.+..+
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 66544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=126.09 Aligned_cols=242 Identities=14% Similarity=0.098 Sum_probs=173.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC-----
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRS-------TCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR----- 189 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 189 (638)
+....+|..+...+...|++++|...++++++. ..+....++..+...+...|++++|...|++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345678999999999999999999999998873 23445677888999999999999999999988754
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC------CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC-
Q 006614 190 -K-CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE------GNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN- 260 (638)
Q Consensus 190 -~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~- 260 (638)
+ .+....++..+...|...|++++|.+.|+++.+. +........+..+...+...|++++|++.++++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 2334667888999999999999999999998765 221134567888899999999999999999998764
Q ss_pred -----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------CCCC-------HHHHHHHHHHHHhcCCHHHH
Q 006614 261 -----GLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG-------CALT-------VYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 261 -----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~~~-------~~~~~~li~~~~~~g~~~~A 320 (638)
+..| ...++..+...|...|++++|.+.++++.+.. ..+. ...+..+...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 2122 35578889999999999999999999987531 1111 11222223344455566666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 321 YGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 321 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
...+....... +.+..++..+...|.+.|++++|.+.+++..+
T Consensus 264 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 264 GGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666665542 22556788899999999999999999998765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.7e-11 Score=118.62 Aligned_cols=235 Identities=11% Similarity=-0.000 Sum_probs=152.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-----CHHHHH
Q 006614 272 LVSIYFKLGEVEKALGLVQEMKGK----GCAL-TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK-P-----DIVLIN 340 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p-----~~~~~~ 340 (638)
....+...|++++|.+.+++..+. +-.+ ...++..+...+...|++++|...+++..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677888888888888887764 1111 2456777888888889999888888887763111 1 235778
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006614 341 NLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420 (638)
Q Consensus 341 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 420 (638)
.+...|...|++++|.+.+++..+.. -..++... ...++..+..+|...
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~~----------------~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMA---------------EAEKQPQL----------------MGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHTTCHHH----------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHH---------------HHcCChHH----------------HHHHHHHHHHHHHHC
Confidence 88889999999999999998876511 01111110 123567788889999
Q ss_pred CCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCCcHHHHHHHHHHHHccC
Q 006614 421 NRVEKAHLLLEEMEEK----GF-PPCPAAYCSLINGYGKAKRYEAANELFLELKEYC----GCSSARVYAVMIKHFGKCG 491 (638)
Q Consensus 421 g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g 491 (638)
|++++|...+++..+. +. +....++..+...+.+.|++++|...+++..+.. .+.....+..+...|...|
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999988762 22 3445678888888888888888888888776531 1111222455556666666
Q ss_pred C---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006614 492 R---LSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 492 ~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (638)
+ +++|+.++++. +..|+ ...+..+...|...|++++|...+++..+
T Consensus 318 ~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 318 DEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6 55555555543 11122 23444555566666666666666665553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=8e-11 Score=117.53 Aligned_cols=299 Identities=9% Similarity=0.025 Sum_probs=188.7
Q ss_pred HhcCChHHHHHHHHHHHhC--CCCCCHH--HHHHHHHHH--HcCCCHHHHH-----------HHHHHhhhCCCCCCHHH-
Q 006614 136 DETRMIGVMWKSIQDMVRS--TCVMGPS--VLSEIVNIL--GKAKMVNKAL-----------SIFYQIKSRKCKPTANT- 197 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~--~~~~~~~--~~~~l~~~~--~~~g~~~~A~-----------~~~~~~~~~~~~~~~~~- 197 (638)
.+.+++++|..+++++.+. ....+.. .|..++..- .-.+.++.+. ..++.+.... .+...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~~ 100 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTGL 100 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchhH
Confidence 4578888888888876553 2223332 333333321 1223333444 5666654421 11122
Q ss_pred -----HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC--C----
Q 006614 198 -----YNSMILMLMQEGYYEKIHELYNEMCNEGNCFP----DTVTYSALISAFGKLGRDISAIRLFDEMKENG--L---- 262 (638)
Q Consensus 198 -----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~---- 262 (638)
+......+...|++++|++.|++..+.....+ ...++..+...+...|++++|+..+++..+.- .
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 22356677889999999999999877421112 24678888899999999999999998877531 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-
Q 006614 263 QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA-LT----VYTYTELIKGLGRAGRVEDAYGLFMNMLKE----GC- 332 (638)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~- 332 (638)
.....+++.+...|...|++++|.+.+++..+.... ++ ..++..+...|...|++++|...+++..+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 112457888889999999999999999887753111 11 247778888999999999999999988872 22
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006614 333 KPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSI 412 (638)
Q Consensus 333 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 412 (638)
+....++..+...|.+.|++++|...+++..+.. -..++.. ....+..
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~-----------------~~~~~~~ 308 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS---------------QKAGDVI-----------------YLSEFEF 308 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHTCHH-----------------HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------HHcCCHH-----------------HHHHHHH
Confidence 3346678888999999999999999998875421 0001100 0112344
Q ss_pred HHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 413 LIDGFCKTNR---VEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 413 li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
+...+...|+ +++|+.++++.. ..+.....+..+...|...|++++|...+++..+
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5566666676 566666665541 1112233555566666667777777666666554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-11 Score=116.55 Aligned_cols=238 Identities=14% Similarity=0.118 Sum_probs=136.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C
Q 006614 371 VVTYNTVIKSLFESKAPASEASAWFEKMKAN-------GVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK------G 437 (638)
Q Consensus 371 ~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~ 437 (638)
...+..+...+...|+..++ ..+++..... ..+.....+..+...+...|++++|...+++..+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A-~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVA-VPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 34556666666666776666 5555555542 12223455666777777777777777777776543 1
Q ss_pred -CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc------CC-CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---
Q 006614 438 -FPPCPAAYCSLINGYGKAKRYEAANELFLELKEY------CG-CSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL--- 506 (638)
Q Consensus 438 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 506 (638)
.+....++..+...+...|++++|.+.++++.+. +. +.....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223456666777777777777777777776653 11 223455666777777777777777777776553
Q ss_pred ---CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCCCC-------HHHHHHHHHHHHhcCChHHHHH
Q 006614 507 ---RCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEED-------GCVPD-------INSHNIILNGLAKSGGPKRAME 568 (638)
Q Consensus 507 ---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------~~~p~-------~~~~~~l~~~~~~~g~~~~A~~ 568 (638)
+..|+ ..++..+...|...|++++|.+.++++.+. ...+. ...+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 11222 345666677777777777777777777642 01111 1111222222334445555555
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 569 IFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 569 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.++...... ..+..++..+..+|.+.|++++|.+++++..+
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555554321 22456788899999999999999999998874
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.3e-10 Score=100.77 Aligned_cols=157 Identities=13% Similarity=0.076 Sum_probs=62.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC
Q 006614 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG 245 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 245 (638)
+...+...|++++|...|+++.+... .+...+..+...+...|++++|.+.++++.+..+ .+...+..+...+...|
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAP--DNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhc
Confidence 33334444444444444444433311 1333444444444444444444444444443322 23333444444444444
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006614 246 RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFM 325 (638)
Q Consensus 246 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 325 (638)
++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|...++
T Consensus 91 ~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 91 KYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444443321 123333333444444444444444444443333211 23333333444444444444444443
Q ss_pred HH
Q 006614 326 NM 327 (638)
Q Consensus 326 ~~ 327 (638)
+.
T Consensus 169 ~~ 170 (186)
T 3as5_A 169 KA 170 (186)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-10 Score=100.55 Aligned_cols=166 Identities=13% Similarity=0.057 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4577888899999999999999999887653 5578889999999999999999999999998764 3478889999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+...|++++|.+.|+++....+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP--INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc--HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998765 678889999999999999999999999998864 4468899999999999999999
Q ss_pred HHHHHHHHHhC
Q 006614 285 ALGLVQEMKGK 295 (638)
Q Consensus 285 A~~~~~~m~~~ 295 (638)
|.+.+++..+.
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999998765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-10 Score=124.61 Aligned_cols=165 Identities=12% Similarity=0.027 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+..+|+.+..++.+.|++++|++.|++.++.. +-+..+++.+..+|.+.|++++|+..|++..+.... +..+|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34555666666666666666666666555532 334455555555555555555555555555554322 4555555555
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
+|.+.|++++|++.|++.++..+ .+...|+.+...+...|++++|++.|++..+.. +-+...+..+...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P--~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINP--AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 55555555555555555555443 344555555555555555555555555555432 123444555555555555555
Q ss_pred HHHHHHHHHH
Q 006614 284 KALGLVQEMK 293 (638)
Q Consensus 284 ~A~~~~~~m~ 293 (638)
+|.+.+++..
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.29 E-value=5.3e-09 Score=103.82 Aligned_cols=265 Identities=15% Similarity=0.074 Sum_probs=115.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCh----hhHHHHHHH
Q 006614 310 GLGRAGRVEDAYGLFMNMLKEGCKPDIV----LINNLINVLGRAGRLEDALKLFNKMEALQCK-PNV----VTYNTVIKS 380 (638)
Q Consensus 310 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~----~~~~~ll~~ 380 (638)
.+...|++++|...+++........+.. +++.+...+...|++++|...+++....... .+. ..+..+-..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445566666666666555543222221 3444555566666666666666655431100 000 111222222
Q ss_pred HHhcCChHHHHHHHHHHHH----hCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHH
Q 006614 381 LFESKAPASEASAWFEKMK----ANGVL--P-SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFP----PCPAAYCSLI 449 (638)
Q Consensus 381 ~~~~~~~~~~~~~~~~~m~----~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li 449 (638)
+...|+..++ ...++... ..+.. | ....+..+...+...|++++|...+++....... ....++..+.
T Consensus 103 ~~~~G~~~~A-~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 103 LFAQGFLQTA-WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHTTCHHHH-HHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHCCCHHHH-HHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 3333333333 22222221 11111 1 1233444555555666666666666655443211 0123444555
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCc--HHHHH----HHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 006614 450 NGYGKAKRYEAANELFLELKEYCGCSS--ARVYA----VMIKHFGKCGRLSDAVDLFNEMKKLRCKPD---VYTYNALMS 520 (638)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~ 520 (638)
..+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 555556666666666655544211111 11111 122234455666666666555543321110 123344455
Q ss_pred HHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 521 GMVRAGMIDDAYSLLRRMEED----GCVPDI-NSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 521 ~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
.+...|++++|...+++.... |..++. ..+..+...+...|+.++|...+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555556666666555555432 111111 1334444555555666666655555553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-09 Score=107.39 Aligned_cols=235 Identities=9% Similarity=0.002 Sum_probs=157.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CC-CHHHH
Q 006614 271 TLVSIYFKLGEVEKALGLVQEMKGKGC-ALT----VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC-----KP-DIVLI 339 (638)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~p-~~~~~ 339 (638)
.....+...|++++|+..+++..+... .++ ..++..+...|...|++++|...+++..+... .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345556788899999999888875411 122 45677788888899999999998888776311 11 24567
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006614 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 340 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~ 419 (638)
+.+...|...|++++|.+.+++..+. .-..++.. ....++..+..+|..
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~---------------~~~~~~~~----------------~~~~~~~~lg~~y~~ 234 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALEL---------------AMDIQNDR----------------FIAISLLNIANSYDR 234 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHH----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH---------------HHHcCCHH----------------HHHHHHHHHHHHHHH
Confidence 78888999999999999999887541 01111111 012456778888999
Q ss_pred cCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC----CCcHHHHHHHHHHHHcc
Q 006614 420 TNRVEKAHLLLEEMEE-----KGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG----CSSARVYAVMIKHFGKC 490 (638)
Q Consensus 420 ~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~ 490 (638)
.|++++|...+++..+ .. +....++..+...+.+.|++++|...+++..+... +.....+..+...+...
T Consensus 235 ~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~ 313 (378)
T 3q15_A 235 SGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKET 313 (378)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC
Confidence 9999999999998876 33 33466788888888888888888888888876422 22234455566666666
Q ss_pred CC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006614 491 GR---LSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 491 g~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (638)
++ +++|+..+++. +..|+ ...+..+...|...|++++|...|++..+
T Consensus 314 ~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 314 VDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77 66666666552 11222 23445566666777777777777766654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.5e-10 Score=101.87 Aligned_cols=208 Identities=8% Similarity=0.009 Sum_probs=163.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
.++..|......+...|++++|...|+..++...+++...+..+..++.+.|++++|+..|++..+..+. +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4678899999999999999999999999998754478888888999999999999999999999987543 677899999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC---HHHHHHH
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDT-------VTYSALISAFGKLGRDISAIRLFDEMKENGLQPT---AKIYTTL 272 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l 272 (638)
..|...|++++|++.|++..+..+ .+. ..|..+...+...|++++|++.|++..+. .|+ ...+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP--GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 999999999999999999998775 444 56888888899999999999999999986 344 5677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006614 273 VSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLIN 344 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 344 (638)
...|...| ...++++...+.. +...|.... ....+.+++|...|++..+..+. +..+...+..
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~ 222 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 88776544 4445555555432 444554443 33456789999999999987544 4555544433
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-10 Score=123.06 Aligned_cols=166 Identities=14% Similarity=0.109 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006614 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
+..+++.+...+.+.|++++|+..|++..+..+. +..+|+.+..+|.+.|++++|++.|++.++..+ .+...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P--~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP--TFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 4556667777777777777777777776665322 566667777777777777777777777766554 4566666666
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 239 SAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE 318 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 318 (638)
..+...|++++|++.|++..+.. +-+...|+.+...|.+.|++++|++.|++..+..+. +...+..+...+...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 77777777777777776666542 224566666666666666666666666666665433 5566666666666666666
Q ss_pred HHHHHHHHHHH
Q 006614 319 DAYGLFMNMLK 329 (638)
Q Consensus 319 ~A~~~~~~~~~ 329 (638)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.26 E-value=4.5e-09 Score=104.38 Aligned_cols=132 Identities=9% Similarity=-0.018 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHC----CCC--C-CH
Q 006614 198 YNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT----VTYSALISAFGKLGRDISAIRLFDEMKEN----GLQ--P-TA 266 (638)
Q Consensus 198 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~ 266 (638)
++.+...+...|++++|.+.+++.....+...+. .++..+...+...|++++|.+.+++..+. +.. | ..
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 3334444444555555555555443321110111 12333444444555555555555544321 111 1 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006614 267 KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA----LTVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
..+..+...+...|++++|...+++....... ....++..+...+...|++++|...+++...
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23444555555555555555555554432111 0123444455555555555555555555543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-09 Score=99.98 Aligned_cols=208 Identities=12% Similarity=0.030 Sum_probs=162.4
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006614 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
+.++..+......+.+.|++++|+..|++..+....++...+..+...+...|++++|++.|++..+..+ .+...+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY--NLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--SHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc--chHHHHHH
Confidence 4567889999999999999999999999999876546888888899999999999999999999999775 56788999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHH
Q 006614 237 LISAFGKLGRDISAIRLFDEMKENGLQPTA-------KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT---VYTYTE 306 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ 306 (638)
+...+...|++++|++.+++..+.. +.+. ..|..+...+...|++++|++.+++..+.. |+ ...+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHH
Confidence 9999999999999999999998863 2344 558888889999999999999999998863 43 456677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006614 307 LIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIK 379 (638)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 379 (638)
+...+...| ..+++++...+.. +...+.... ....+.+++|...+++..+.. |+......++.
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~--p~~~~~~~~l~ 221 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS--PNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHH
Confidence 777775544 3445555554322 444444433 334567899999999998854 66555444443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-09 Score=106.81 Aligned_cols=235 Identities=10% Similarity=0.032 Sum_probs=164.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006614 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421 (638)
Q Consensus 342 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 421 (638)
....+...|++++|...+++..+.... .++... ....+..+...|...|
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~----------------~a~~~~~lg~~y~~~~ 155 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPF---------------VSDDIE----------------KAEFHFKVAEAYYHMK 155 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGG---------------CCCHHH----------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhh---------------CCChHH----------------HHHHHHHHHHHHHHcC
Confidence 444566778888888888877552100 011000 1235666778888889
Q ss_pred CHHHHHHHHHHHHhCC--CC----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC----CC-CcHHHHHHHHHHHHcc
Q 006614 422 RVEKAHLLLEEMEEKG--FP----PCPAAYCSLINGYGKAKRYEAANELFLELKEYC----GC-SSARVYAVMIKHFGKC 490 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~--~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~ 490 (638)
++++|...+++..+.. .. ....++..+...|...|++++|.+.+.+..+.. .. ....++..+..+|...
T Consensus 156 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 9999988888876421 11 124467788888899999999999988877631 11 1235677888899999
Q ss_pred CCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCC
Q 006614 491 GRLSDAVDLFNEMKKL----RCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGC----VPDINSHNIILNGLAKSGG 562 (638)
Q Consensus 491 g~~~~A~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~l~~~~~~~g~ 562 (638)
|++++|...|++..+. +.+....++..+...+.+.|++++|...+++..+... +.....+..+...+...|+
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 9999999999988761 2222366788889999999999999999999887421 1123455666666777788
Q ss_pred ---hHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 563 ---PKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 563 ---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
+++|+.++++.. ..|+ ...+..+...|...|++++|.+.+++..+
T Consensus 316 ~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 316 ERKIHDLLSYFEKKN---LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788888887742 2232 34567888999999999999999998764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-10 Score=108.67 Aligned_cols=227 Identities=14% Similarity=0.089 Sum_probs=147.4
Q ss_pred hcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC------C-CCCCHHHHHHHH
Q 006614 137 ETRMIGVMWKSIQDMVRS-------TCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR------K-CKPTANTYNSMI 202 (638)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~ 202 (638)
..|++++|...+++.++. ..+....++..+...+...|++++|...|++..+. + .+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666665542 22334567888888889999999999999888654 1 122456788888
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCC-----C-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC------CCCC-CHHHH
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEG-----N-CFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN------GLQP-TAKIY 269 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~ 269 (638)
..|...|++++|++.|+++.... + .+....++..+...+...|++++|...++++.+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 88999999999999999887651 1 1134567788888888999999999999888764 1122 35677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCC
Q 006614 270 TTLVSIYFKLGEVEKALGLVQEMKGK-------GCAL-TVYTYTELIKGLGRAGRV------EDAYGLFMNMLKEGCKPD 335 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~-~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~p~ 335 (638)
..+...|...|++++|.+.+++..+. ...+ ....+..+.......+.. ..+...++..... .+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHH
Confidence 88888888999999999888887753 1111 222333333333332222 2222222221111 1113
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 336 IVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 336 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
..++..+...|...|++++|...+++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677788888888999999988887754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.3e-10 Score=107.53 Aligned_cols=227 Identities=15% Similarity=0.073 Sum_probs=158.0
Q ss_pred cchHHHHHHHHHhhh------CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C-CCCCHHHHHHHHHH
Q 006614 103 VEINVKIQFFKWAGR------RRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRS------T-CVMGPSVLSEIVNI 169 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~ 169 (638)
++++.|+..|+.+.. ....+....+|..+..++...|++++|...++++++. + .+....++..+...
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 445555555555432 1222345778999999999999999999999998764 1 12345678999999
Q ss_pred HHcCCCHHHHHHHHHHhhhC------C-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC------CCCCCCHHHHHH
Q 006614 170 LGKAKMVNKALSIFYQIKSR------K-CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE------GNCFPDTVTYSA 236 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~ 236 (638)
+...|++++|...|.+..+. . .+....++..+...|...|++++|.+.|+++.+. ...+....++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999998764 1 1234677889999999999999999999999875 111124567889
Q ss_pred HHHHHHccCChHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCHH
Q 006614 237 LISAFGKLGRDISAIRLFDEMKEN-------GLQP-TAKIYTTLVSIYFKLGE------VEKALGLVQEMKGKGCALTVY 302 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~-------g~~~-~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~~~~~ 302 (638)
+...+...|++++|.+.++++.+. ...+ ....+..+...+...+. +..+...++..... .+....
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 253 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNT 253 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHH
Confidence 999999999999999999998763 1122 22334444444433332 23333333222111 112355
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 303 TYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
++..+...|...|++++|..+|++.++.
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7888899999999999999999988753
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.12 E-value=9.3e-08 Score=97.72 Aligned_cols=216 Identities=11% Similarity=-0.006 Sum_probs=119.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHhhhC-CC-CCCHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKM-VNKALSIFYQIKSR-KC-KPTANTY 198 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~-~~~~~~~ 198 (638)
.+-..+|...+..+.. |+++.+..+|+..+. ..|+...|...+....+.+. .+....+|+..... |. ..+...|
T Consensus 12 ~~aR~vyer~l~~~P~-~~~e~~~~iferal~--~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMS-KDYRSLESLFGRCLK--KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHST--TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 3344556666666554 778888888888877 34688888777777666553 35566677776543 43 2366777
Q ss_pred HHHHHHHH----hcCCHhHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006614 199 NSMILMLM----QEGYYEKIHELYNEMCNEGNCFPDTV-TYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 199 ~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
...+..+. .+|+.+.+..+|++++.. +. .+.. .|..... +.+......+..++.+.
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~-~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~---------------- 149 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PM-GSLSELWKDFEN-FELELNKITGKKIVGDT---------------- 149 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CC-TTHHHHHHHHHH-HHHHHCHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hh-hhHHHHHHHHHH-HHHHhccccHHHHHHHH----------------
Confidence 77766543 245677788888888773 21 2221 1211111 11111111222222111
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006614 274 SIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG--R-----VEDAYGLFMNMLKEGCKPDIVLINNLINVL 346 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 346 (638)
.+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|++++...+ .+...|...+..+
T Consensus 150 -----~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~ 223 (493)
T 2uy1_A 150 -----LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYL 223 (493)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 1123334444443332100013345555554432211 1 2345678888887643 3577787788888
Q ss_pred HccCCHHHHHHHHHHHHHC
Q 006614 347 GRAGRLEDALKLFNKMEAL 365 (638)
Q Consensus 347 ~~~g~~~~A~~~~~~~~~~ 365 (638)
.+.|+.+.|..++++....
T Consensus 224 ~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 224 IGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhC
Confidence 8888999999999988876
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-09 Score=103.19 Aligned_cols=131 Identities=13% Similarity=0.030 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcc-CChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----
Q 006614 233 TYSALISAFGKL-GRDISAIRLFDEMKENGLQ-PT----AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV----- 301 (638)
Q Consensus 233 ~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----- 301 (638)
+++.+...|... |++++|+..|++..+.... .+ ..+++.+...+.+.|++++|+..+++..+..+....
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 344444444443 5555555555444432000 00 233445555555555555555555555543322111
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHHH--ccCCHHHHHHHHHHHH
Q 006614 302 -YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK-PD---IVLINNLINVLG--RAGRLEDALKLFNKME 363 (638)
Q Consensus 302 -~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~---~~~~~~li~~~~--~~g~~~~A~~~~~~~~ 363 (638)
..|..+..++...|++++|...|++..+..+. ++ ...+..++..+. ..+++++|+..|+.+.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 13444445555555555555555555442111 00 112233344443 3345666666665543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.1e-09 Score=97.55 Aligned_cols=188 Identities=8% Similarity=-0.063 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--CCHHH
Q 006614 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG---PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANT 197 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~ 197 (638)
.+...+......+.+.|++++|...|+.+++.. +.+ +..+..+..++.+.|++++|+..|+++.+..+. ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355666666677777777777777777776642 222 456666667777777777777777776665221 12445
Q ss_pred HHHHHHHHHh--------cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHH
Q 006614 198 YNSMILMLMQ--------EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIY 269 (638)
Q Consensus 198 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 269 (638)
+..+..++.. .|++++|+..|+++.+..+. +......+ ..+...... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~--------------~~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDAT--------------QKIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHH--------------HHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHH--------------HHHHHHHHH----HHHHH
Confidence 5566666666 67777777777776665532 11111111 000000000 01123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcC
Q 006614 270 TTLVSIYFKLGEVEKALGLVQEMKGKGCAL--TVYTYTELIKGLGRA----------GRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~ 331 (638)
..+...|.+.|++++|+..|+++.+..+.. ....+..+..+|... |++++|...|+++++..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 455666777777777777777776653321 234555556666544 66777777777776653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-08 Score=84.52 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006614 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
..+...+...|++++|..+|+++.+..+ .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCC--cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3344444444444444444444443332 233334444444444444444444444443322 1233334444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 279 LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
.|++++|.+.++++.+.... +...+..+...+...|++++|...++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44444444444444433221 23334444444444444444444444443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.8e-09 Score=96.83 Aligned_cols=122 Identities=12% Similarity=0.040 Sum_probs=89.4
Q ss_pred cccchHHHHHHHHHhhhCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHc---
Q 006614 101 IDVEINVKIQFFKWAGRRRNFEHN---STTYMALIRCLDETRMIGVMWKSIQDMVRSTC--VMGPSVLSEIVNILGK--- 172 (638)
Q Consensus 101 ~~~~~~~a~~~f~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~--- 172 (638)
..++++.|+..|+.+.... +.+ ..++..+..++.+.|++++|...++..++... +..+.++..+..++.+
T Consensus 27 ~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~ 104 (261)
T 3qky_A 27 NQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSP 104 (261)
T ss_dssp HTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCC
T ss_pred HhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcc
Confidence 3678999999999887654 333 78999999999999999999999999988532 1235678888889988
Q ss_pred -----CCCHHHHHHHHHHhhhCCCCCCHHHH-----------------HHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 173 -----AKMVNKALSIFYQIKSRKCKPTANTY-----------------NSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 173 -----~g~~~~A~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.|++++|+..|+++.+..+. +.... ..+...|.+.|++++|+..|+++.+..
T Consensus 105 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 178 (261)
T 3qky_A 105 PYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY 178 (261)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999999887432 33333 233445555555555555555555443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-08 Score=84.26 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+..+...+...|++++|..+|+++.+... .+...+..+...+...|++++|...|+++....+ .+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHH
Confidence 33444444455555555555555444321 2444455555555555555555555555555443 34445555555555
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006614 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 5555555555555555432 224445555555566666666666666555543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=9e-09 Score=98.10 Aligned_cols=203 Identities=9% Similarity=0.005 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-CC----H
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRS----TCVM-GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK-PT----A 195 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~ 195 (638)
..|.....+|...|++++|...+.+.+.. +-++ ...+++.+..+|.+.|++++|+..|++..+.... .+ .
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 45666666666666777666666665442 1111 1345666666666666666666666665543110 01 3
Q ss_pred HHHHHHHHHHHhc-CCHhHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----
Q 006614 196 NTYNSMILMLMQE-GYYEKIHELYNEMCNEGNCFPD----TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA---- 266 (638)
Q Consensus 196 ~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~---- 266 (638)
.+++.+..+|... |++++|++.|++..+..+...+ ..++..+...+.+.|++++|+..|++..+.......
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 3566666666664 6666666666666553321011 234556666666666666666666666654322111
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C---HHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 006614 267 --KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL-T---VYTYTELIKGLG--RAGRVEDAYGLFMNML 328 (638)
Q Consensus 267 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~---~~~~~~li~~~~--~~g~~~~A~~~~~~~~ 328 (638)
..|..+..++...|++++|...+++..+..+.. + ...+..++..+. ..+++++|+..|+.+.
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 134555666666666666666666665532210 0 112233334443 3345666666655543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.04 E-value=5.5e-07 Score=92.04 Aligned_cols=201 Identities=11% Similarity=-0.013 Sum_probs=133.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 006614 392 SAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY 471 (638)
Q Consensus 392 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (638)
..++++.... ++.+...|...+..+.+.|+.++|..++++.... |.+...+...... .+.+ +. ++.+.+.
T Consensus 199 ~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~---~~---~~~l~~~ 268 (493)
T 2uy1_A 199 HFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEE---AV---YGDLKRK 268 (493)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCT---HH---HHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchh---HH---HHHHHHH
Confidence 4556666553 2445777888888888889999999999998887 4444333322211 1111 11 2222221
Q ss_pred C------------CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHH
Q 006614 472 C------------GCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV-RAGMIDDAYSLLRRM 538 (638)
Q Consensus 472 ~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m 538 (638)
- ......+|...+....+.++.+.|..+|++. +.. ..+...|......-. ..++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 0 0112345667777777788899999999999 321 123344432222212 234799999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 539 EEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 539 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.+.. +-+...+...++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+.++++++..
T Consensus 347 l~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9863 2245566677888889999999999999983 2577888888877888999999998888774
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.03 E-value=6e-08 Score=90.46 Aligned_cols=178 Identities=11% Similarity=0.059 Sum_probs=84.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 426 AHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG-CSSARVYAVMIKHFGKCGRLSDAVDLFNEMK 504 (638)
Q Consensus 426 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (638)
|+..+++..+.+ +++..++..+..++...|++++|++++.+....+. ..+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444433 33344444555555555555555555555544322 1344455555555555555555555555555
Q ss_pred hCCCCC-----CHHHHHHHHHHHH--HcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 505 KLRCKP-----DVYTYNALMSGMV--RAG--MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 505 ~~~~~p-----~~~~~~~l~~~~~--~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
+. .| +..+...+..+++ ..| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 23 2333344443422 222 555566666665443 23322223333355555666666666554432
Q ss_pred C-----CC----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 576 S-----EI----KPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 576 ~-----~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
. +. .-|+.++..+|......|+ +|.++++++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 1 00 1133444344444444554 55555555554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-08 Score=91.41 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=69.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
+..+|.+.|++++|+..|++..+..+ .+...+..+...+...|++++|+..|++..+.. +.+..++..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP--NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 66666666777777777766666554 456666666666666666666666666666642 224556666666655443
Q ss_pred C--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 281 E--VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 281 ~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
+ .+.+...++.... +.|....+.....++...|++++|...|++.++.
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3 2333444443321 1222222333344455566666666666666653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-08 Score=90.97 Aligned_cols=176 Identities=8% Similarity=-0.010 Sum_probs=132.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHcCCCHHHHHHHHHHhh
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSE----------------IVNILGKAKMVNKALSIFYQIK 187 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~ 187 (638)
+...+......+...|++++|...|+..++.. +.++..+.. +..++.+.|++++|+..|++..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455666777889999999999999988742 334556666 8899999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC--hHHHHHHHHHHHHCCCCCC
Q 006614 188 SRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR--DISAIRLFDEMKENGLQPT 265 (638)
Q Consensus 188 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~~~ 265 (638)
+..+. +...+..+..++...|++++|+..|++..+..+ .+...+..+...+...|+ ...+...++.... ..|.
T Consensus 82 ~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 156 (208)
T 3urz_A 82 QKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEA--DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKM 156 (208)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHH
T ss_pred HHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCch
Confidence 87543 788999999999999999999999999999876 678888888888866654 3445555655542 2233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006614 266 AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTEL 307 (638)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 307 (638)
...+.....++...|++++|...|++..+. .|+......+
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 334455566677789999999999999876 4565444433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-07 Score=88.83 Aligned_cols=181 Identities=14% Similarity=0.064 Sum_probs=107.2
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 006614 179 ALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMK 258 (638)
Q Consensus 179 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 258 (638)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..++..-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666554 3455555666677777777777777777766654311355666677777777777777777777776
Q ss_pred HCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006614 259 ENGLQP-----TAKIYTTLVSIYF--KLG--EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 259 ~~g~~~-----~~~~~~~li~~~~--~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
+. .| +..+...|+.++. ..| ++.+|..+|+++.+.. |+..+...++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 34 2444444554422 223 6777777777776542 3322333334467777777777777775554
Q ss_pred cC---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006614 330 EG---------CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 330 ~~---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
.- -+-|..+...+|......|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 21 02245555455555555565 6677777776643
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.00 E-value=4e-09 Score=113.12 Aligned_cols=171 Identities=11% Similarity=-0.046 Sum_probs=90.5
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 006614 136 DETRMIGVMWKSIQDMV--------RSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
...|++++|.+.+++.+ +. .+.+...+..+..++.+.|++++|+..|++..+.... +...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 45566666666666655 21 1334455555555566666666666666655554222 45555555566666
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
.|++++|++.|++..+..+ .+...+..+...+.+.|++++ ++.|++..+.. +.+...|..+..++.+.|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~l~P--~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP--GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST--TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666555543 344555555555555566555 55555555432 2244555555555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006614 288 LVQEMKGKGCALTVYTYTELIKGLGR 313 (638)
Q Consensus 288 ~~~~m~~~~~~~~~~~~~~li~~~~~ 313 (638)
.|++..+.++. +...+..+..++..
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLS 580 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC-
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHc
Confidence 55555544322 23344444444433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.7e-09 Score=111.88 Aligned_cols=174 Identities=10% Similarity=-0.081 Sum_probs=135.7
Q ss_pred HcCCCHHHHHHHHHHhh--------hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006614 171 GKAKMVNKALSIFYQIK--------SRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
...|++++|++.|++.. +.. +.+...+..+..++.+.|++++|++.|+++.+..+ .+...|..+...+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG--WRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc--chHHHHHHHHHHHH
Confidence 67888999999998887 432 33677888888888999999999999999888765 57788888888888
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006614 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
..|++++|++.|++..+.. +.+...|..+...+.+.|++++ ++.|++..+.++. +...|..+...+.+.|++++|..
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 8999999999998888763 2367778888888888899888 8888888877654 67788888888889999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006614 323 LFMNMLKEGCKPDIVLINNLINVLGRAGR 351 (638)
Q Consensus 323 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 351 (638)
.|++..+..+. +...+..+..++...++
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 88888775432 45667677777665554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.3e-07 Score=85.67 Aligned_cols=218 Identities=8% Similarity=0.035 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCH
Q 006614 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG--RDISAIRLFDEMKENGLQPTAKIYTTLVSIY----FKL---GEV 282 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g~~ 282 (638)
++|++.++.++..++ .+...|+.-...+...| +++++++.++.+.... +-+..+|+.-...+ ... +++
T Consensus 50 ~~aL~~t~~~L~~nP--~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINELA--SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHHCc--HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 345555555544443 33344444444444444 4555555555544432 12333343333322 223 455
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC------HHH
Q 006614 283 EKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE--DAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR------LED 354 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~ 354 (638)
++++++++++.+..+. +..+|+.-.-.+.+.|.++ +++..++++++..+. |...|+.-...+.+.+. +++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 5666666665555443 5555555544555555555 666666666665444 55555554444444444 566
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006614 355 ALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG--VLPSPFTYSILIDGFCKTNRVEKAHLLLEE 432 (638)
Q Consensus 355 A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 432 (638)
+++.++.+...... |...|+.+-..+.+.+...+.+..+...+...+ -+.+...+..+.+.+.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 66666666554422 445555555444444544443333444333221 134566677777777777777777777777
Q ss_pred HHh
Q 006614 433 MEE 435 (638)
Q Consensus 433 ~~~ 435 (638)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.6e-07 Score=84.92 Aligned_cols=217 Identities=9% Similarity=0.064 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH----Hhc---CCHh
Q 006614 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK--MVNKALSIFYQIKSRKCKPTANTYNSMILML----MQE---GYYE 212 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~~ 212 (638)
++|+++...++..+ +-...+|+.-...+...| ++++++..++.+....++ +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 56777777766642 444556666666666666 777777777777766444 556666655555 444 6777
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHH
Q 006614 213 KIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI--SAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE------VEK 284 (638)
Q Consensus 213 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------~~~ 284 (638)
+++++++++.+..+ .+-.+|+.-.-.+.+.|+++ ++++.++++.+.. +-|...|+.-...+.+.++ +++
T Consensus 128 ~EL~~~~~~l~~~p--kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSDP--KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 77788887777665 56666666666666677776 7777777777764 2366677766666666665 777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED-AYGLFMNMLKEG--CKPDIVLINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 361 (638)
+++.++.+....+. |...|+-+...+.+.|+..+ +..+.+++.+.+ -..+...+..++..|.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 88888877777655 77777777777777776444 444555555432 123667777788888888888888888888
Q ss_pred HHH
Q 006614 362 MEA 364 (638)
Q Consensus 362 ~~~ 364 (638)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.96 E-value=7.2e-08 Score=87.80 Aligned_cols=204 Identities=8% Similarity=-0.079 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC-H-HHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCV-M-GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT-A-NTYNS 200 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~~ 200 (638)
...+..+...+.+.|++++|+..|+.+++.... + ....+..+..++.+.|++++|+..|+++.+..+... . .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555566666666666666666666653211 1 124555566666666666666666666655422211 1 13333
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKL 279 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~ 279 (638)
+..++.+.|.. .+ ..|..+...+...|+.++|+..|+++.+.. |+ ...+.......
T Consensus 84 ~g~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~--- 140 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV--- 140 (225)
T ss_dssp HHHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH---
T ss_pred HHHHHHhhhhh-----hh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH---
Confidence 44444332100 00 001111112223455555555555555431 22 11111110000
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHH
Q 006614 280 GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPD--IVLINNLINVLGRAGRLEDALK 357 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~ 357 (638)
.+...+ ......+...+.+.|++++|...|+++++..+... ...+..+..+|.+.|+.++|.+
T Consensus 141 -------~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 141 -------FLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp -------HHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------HHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 000000 00112344556666777777777777666532211 1345666667777777777777
Q ss_pred HHHHHHHCC
Q 006614 358 LFNKMEALQ 366 (638)
Q Consensus 358 ~~~~~~~~~ 366 (638)
.++.+...+
T Consensus 206 ~~~~l~~~~ 214 (225)
T 2yhc_A 206 VAKIIAANS 214 (225)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhhC
Confidence 777666544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2e-08 Score=95.38 Aligned_cols=160 Identities=13% Similarity=0.034 Sum_probs=68.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHH-HHHHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTY-SALISA 240 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~l~~~ 240 (638)
.+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|...++++.... |+.... ......
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~~~~~~~ 194 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD---QDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG---CSHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh---cchHHHHHHHHHH
Confidence 3344444444444444444444444443221 34444444444444445555444444444332 222111 111122
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 006614 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL-TVYTYTELIKGLGRAGRVED 319 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~ 319 (638)
+...++.++|...+++..+.. +.+...+..+...+...|++++|++.+.++.+..+.. +...+..++..+...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 333344444444444444432 2234444444455555555555555555444433221 13344444555555555555
Q ss_pred HHHHHHH
Q 006614 320 AYGLFMN 326 (638)
Q Consensus 320 A~~~~~~ 326 (638)
|...|++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.94 E-value=9.7e-08 Score=86.95 Aligned_cols=194 Identities=10% Similarity=-0.045 Sum_probs=117.6
Q ss_pred cccchHHHHHHHHHhhhCC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCCH
Q 006614 101 IDVEINVKIQFFKWAGRRR-NFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP---SVLSEIVNILGKAKMV 176 (638)
Q Consensus 101 ~~~~~~~a~~~f~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~ 176 (638)
..++.+.|+..|..+.... ..+....++..+..++.+.|++++|+..++.+++.. +.++ ..+..+..++.+.|..
T Consensus 16 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g~~~~~~~~~ 94 (225)
T 2yhc_A 16 QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMRGLTNMALDDS 94 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHHHHHHHhhhhh
Confidence 3578899999999887653 223335788899999999999999999999998853 2222 2455555555443311
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 006614 177 NKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDE 256 (638)
Q Consensus 177 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 256 (638)
....|..+...+...|++++|+..|+++.+..+. +...+...... ..+...
T Consensus 95 -----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~--~~~a~~a~~~l----------~~~~~~ 145 (225)
T 2yhc_A 95 -----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN--SQYTTDATKRL----------VFLKDR 145 (225)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHTTCTT--CTTHHHHHHHH----------HHHHHH
T ss_pred -----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC--ChhHHHHHHHH----------HHHHHH
Confidence 1112333444556678889999999999887642 22222211110 000111
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006614 257 MKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT--VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC 332 (638)
Q Consensus 257 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 332 (638)
+ ......+...|.+.|++++|+..|+++.+..+... ...+..+..++.+.|+.++|...++.+...++
T Consensus 146 ~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 146 L--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp H--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred H--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 1 01123456677788888888888888777643211 24566777888888888888888887777643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-07 Score=84.54 Aligned_cols=176 Identities=14% Similarity=0.011 Sum_probs=105.5
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC----ChHHHHHH
Q 006614 178 KALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG----RDISAIRL 253 (638)
Q Consensus 178 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 253 (638)
+|.+.|.+..+.| ++.++..+...|...+++++|++.|++..+.+ +...+..+...|.. + ++++|.+.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3455555555542 56666666666666666666666666666543 34455555555555 4 66666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 006614 254 FDEMKENGLQPTAKIYTTLVSIYFK----LGEVEKALGLVQEMKGKGCA-LTVYTYTELIKGLGR----AGRVEDAYGLF 324 (638)
Q Consensus 254 ~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~ 324 (638)
|++..+.| +...+..|...|.. .+++++|++.|++..+.|.. .+...+..|...|.. .+++++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 66666644 55566666666655 66677777777766665431 014556666666666 66677777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcc-C-----CHHHHHHHHHHHHHCC
Q 006614 325 MNMLKEGCKPDIVLINNLINVLGRA-G-----RLEDALKLFNKMEALQ 366 (638)
Q Consensus 325 ~~~~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~~~~~~ 366 (638)
++..+.+ .+...+..|...|... | +.++|..+|+...+.|
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7776651 2333555566655432 2 6777777777766544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-07 Score=85.44 Aligned_cols=162 Identities=12% Similarity=0.033 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC----CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006614 442 PAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCG----RLSDAVDLFNEMKKLRCKPDVYTYNA 517 (638)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~ 517 (638)
+.++..+...|...+++++|.+.|++..+.+ +...+..+...|.. + ++++|...|++..+.| +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3444444444444444444444444444432 23333444444444 3 4555555555544432 3334444
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 518 LMSGMVR----AGMIDDAYSLLRRMEEDGCV-PDINSHNIILNGLAK----SGGPKRAMEIFTKMQHSEIKPDAVSYNTI 588 (638)
Q Consensus 518 l~~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 588 (638)
|...|.. .+++++|.+.|++..+.|.. .+...+..|...|.. .+++++|..+|++..+. ..+...+..+
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~L 168 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWA 168 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHH
Confidence 4444443 44555555555555544311 014444455555554 45555555555555543 1223344444
Q ss_pred HHHHHcc-C-----CHHHHHHHHHHHHhCC
Q 006614 589 LGCLSRA-G-----MFEEAARLMKDMNAKG 612 (638)
Q Consensus 589 ~~~~~~~-g-----~~~~A~~~~~~m~~~~ 612 (638)
...|... | ++++|..++++..+.|
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4444332 2 5566666666555554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=4.6e-09 Score=88.75 Aligned_cols=83 Identities=11% Similarity=-0.023 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006614 164 SEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 164 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
..+...|.+.|++++|+..|++..+..+. +..+|..+..+|.+.|++++|+..|++..+..+ .+...+..+...+.+
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELNP--TQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH
Confidence 33444444444444444444444333211 344444444444444444444444444444332 233344444444444
Q ss_pred cCChHH
Q 006614 244 LGRDIS 249 (638)
Q Consensus 244 ~g~~~~ 249 (638)
.|++++
T Consensus 112 ~~~~~~ 117 (150)
T 4ga2_A 112 NDVTDG 117 (150)
T ss_dssp HCSSSS
T ss_pred cCChHH
Confidence 444433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=6.5e-09 Score=87.79 Aligned_cols=111 Identities=7% Similarity=-0.023 Sum_probs=51.7
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHH
Q 006614 170 LGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDIS 249 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 249 (638)
+...|++++|+..+.+...... -+...+..+...|.+.|++++|++.|++.++..+ .+..+|..+...+.+.|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--RDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCchHH
Confidence 3344455555555555444311 1223334445555555555555555555555443 344445555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 250 AIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 250 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
|+..|++..+.. +-+..++..+...|.+.|++++
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHH
Confidence 555555544432 1134444444444444444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-08 Score=88.08 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=85.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH-H
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA-F 241 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 241 (638)
+......+.+.|++++|...|++..+..+ .+...+..+...+.+.|++++|+..|+++.... |+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHH
Confidence 33444555566666666666666554422 255566666666666666666666666655543 222222111111 1
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 006614 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL-TVYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A 320 (638)
...+...+|+..+++..+.. +.+...+..+...+...|++++|...++++.+..+.+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 11122233555666655532 2245566666666666666666666666666554432 244555666666666666666
Q ss_pred HHHHHHHH
Q 006614 321 YGLFMNML 328 (638)
Q Consensus 321 ~~~~~~~~ 328 (638)
...|++.+
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.9e-08 Score=87.68 Aligned_cols=163 Identities=13% Similarity=0.063 Sum_probs=124.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-H
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM-L 205 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 205 (638)
.+......+.+.|++++|...++..++.. +.++..+..+..++.+.|++++|+..|+++.+..+ +...+...... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 45667778888999999999998877643 55678888899999999999999999998877633 55444333322 2
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 006614 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~ 284 (638)
...+...+|+..|++..+..+ .+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANP--DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 233344457888998888765 568888889999999999999999999988864322 35678888999999999999
Q ss_pred HHHHHHHHHh
Q 006614 285 ALGLVQEMKG 294 (638)
Q Consensus 285 A~~~~~~m~~ 294 (638)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=6.3e-08 Score=101.98 Aligned_cols=156 Identities=8% Similarity=-0.064 Sum_probs=111.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 006614 138 TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHEL 217 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 217 (638)
.|++++|.+.+++.++.. +.+...+..+...+.+.|++++|...|++..+.... +...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477888888888877642 456778888888888888999999988888877433 678888888888888999999998
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 006614 218 YNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL---GEVEKALGLVQEMKG 294 (638)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 294 (638)
|++..+..+ .+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.+++..+
T Consensus 80 ~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAP--EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 888888765 567788888888888888888888888888753 33577788888888888 888888888888887
Q ss_pred CCCC
Q 006614 295 KGCA 298 (638)
Q Consensus 295 ~~~~ 298 (638)
.+..
T Consensus 157 ~~p~ 160 (568)
T 2vsy_A 157 QGVG 160 (568)
T ss_dssp HTCC
T ss_pred cCCc
Confidence 7544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=5.7e-08 Score=92.14 Aligned_cols=167 Identities=11% Similarity=0.034 Sum_probs=140.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHH-
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS- 200 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~- 200 (638)
+.+...+..+...+.+.|++++|...+++.++.. +.++..+..+...+.+.|++++|...++++... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 4566788899999999999999999999998863 567889999999999999999999999999876 345443333
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhc
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQ-PTAKIYTTLVSIYFKL 279 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~ 279 (638)
....+.+.++.++|++.|++.....+ .+...+..+...+...|++++|++.|+++.+.... .+...+..++..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P--~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP--EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 33447788889999999999999876 68889999999999999999999999999986421 1267899999999999
Q ss_pred CCHHHHHHHHHHHH
Q 006614 280 GEVEKALGLVQEMK 293 (638)
Q Consensus 280 g~~~~A~~~~~~m~ 293 (638)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 99999998887754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6.1e-08 Score=102.05 Aligned_cols=153 Identities=10% Similarity=-0.034 Sum_probs=119.0
Q ss_pred cchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 006614 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
++.+.|+..|+.+.... +.+...|..+..++.+.|++++|.+.+++.++.. +.+...+..+...+.+.|++++|...
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45678888888776544 5578899999999999999999999999998853 55688899999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc---CChHHHHHHHHHHHH
Q 006614 183 FYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL---GRDISAIRLFDEMKE 259 (638)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~ 259 (638)
|++..+... .+...+..+...|.+.|++++|.+.|++..+..+ .+...+..+...+... |+.++|.+.+++..+
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999988743 3788899999999999999999999999998775 5778888999999999 999999999999988
Q ss_pred CC
Q 006614 260 NG 261 (638)
Q Consensus 260 ~g 261 (638)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 64
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.83 E-value=8.9e-07 Score=84.28 Aligned_cols=164 Identities=13% Similarity=0.061 Sum_probs=112.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTV----TYSALISAFGKLGRDISAIRLFDEMKENGLQ-PT----AKIYTT 271 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~ 271 (638)
.+..+...|++++|.+.+++..+.....|+.. .+..+...+...|++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888776543323321 2334666666777888888888888763221 22 236788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 006614 272 LVSIYFKLGEVEKALGLVQEMKGK-----GCAL-TVYTYTELIKGLGRAGRVEDAYGLFMNMLKE----GCKPD-IVLIN 340 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~-----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~ 340 (638)
+...|...|++++|+..++++.+. +..+ ...++..+...|.+.|++++|...+++.++. +..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888888887731 1111 2346777888888999999998888887753 22222 56788
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHH
Q 006614 341 NLINVLGRAG-RLEDALKLFNKMEA 364 (638)
Q Consensus 341 ~li~~~~~~g-~~~~A~~~~~~~~~ 364 (638)
.+..+|.+.| ++++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888898898 46889888887754
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5.8e-06 Score=78.75 Aligned_cols=223 Identities=13% Similarity=0.050 Sum_probs=132.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc-C-CHh
Q 006614 136 DETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK-MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQE-G-YYE 212 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~ 212 (638)
.+.+..++|+++++.++..+ +-+..+|+.--..+...| .+++++.+++.+....++ +..+|+.....+.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 33344456666666666642 344455666555555566 477777777777666444 666666666666555 5 667
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---
Q 006614 213 KIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI--------SAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE--- 281 (638)
Q Consensus 213 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--- 281 (638)
+++++++++.+..+ .|...|+.-.-.+.+.|+++ ++++.++++.+.. +-|...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~dp--kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 143 SEIEYIHGSLLPDP--KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHTSSCT--TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 77777777776554 45555555444444444444 6777777776653 2366667766666666665
Q ss_pred ----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcC-----C
Q 006614 282 ----VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRV--------------------EDAYGLFMNMLKEG-----C 332 (638)
Q Consensus 282 ----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~ 332 (638)
++++++.++++....+. |...|+-+-..+.+.|+. .+......++...+ .
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 56777777777666554 666666555555544432 22223333332221 1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 333 KPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 333 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
.+.......+++.|...|+.++|.++++.+.+
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 34677778888888888888888888888754
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=7e-06 Score=78.22 Aligned_cols=138 Identities=11% Similarity=0.029 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc-C-ChHH
Q 006614 173 AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEG-YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL-G-RDIS 249 (638)
Q Consensus 173 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~ 249 (638)
.+..++|+.+++++....+. +..+|+.-...+...| .++++++.++.++..++ .+..+|+.-...+.+. + +.++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP--Kny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL--KSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHhcCCChHH
Confidence 33445666666666655433 5555666555555555 36666666666666554 4455555444444444 4 5555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006614 250 AIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE--------KALGLVQEMKGKGCALTVYTYTELIKGLGRAG 315 (638)
Q Consensus 250 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 315 (638)
++++++.+.+.. +-|..+|+.-...+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 556555555542 224445544443333333333 444444444444333 4444444444333333
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=7.5e-07 Score=80.14 Aligned_cols=128 Identities=13% Similarity=0.028 Sum_probs=78.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006614 164 SEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 164 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
..+...+...|++++|...|++.. .|+...|..+...+.+.|++++|++.|++.....+ .+...+..+...+..
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHH
Confidence 344455556666666666666553 33556666666666666666666666666665543 455566666666666
Q ss_pred cCChHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006614 244 LGRDISAIRLFDEMKENGLQ--------------P-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGC 297 (638)
Q Consensus 244 ~g~~~~A~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 297 (638)
.|++++|++.|++..+.... | ....+..+...+.+.|++++|.+.+++..+..+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 66666666666666653210 1 125666777777777777777777777776543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.8e-07 Score=88.38 Aligned_cols=200 Identities=11% Similarity=-0.000 Sum_probs=115.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 006614 138 TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHEL 217 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 217 (638)
.|++++|.+++++..+... .+ .+...+++++|...|.+. ...|...|++++|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4556666666666544211 00 011135666666665554 3345566777777777
Q ss_pred HHHHHhCCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 006614 218 YNEMCNEGNCFPD----TVTYSALISAFGKLGRDISAIRLFDEMKEN----GLQP-TAKIYTTLVSIYFKLGEVEKALGL 288 (638)
Q Consensus 218 ~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~ 288 (638)
|.+.........+ ..+|+.+...|...|++++|+..+++..+. |-.. -..+++.+...|.. |++++|++.
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 7666543211011 345666667777777777777777765532 1110 13456666777766 777777777
Q ss_pred HHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHH
Q 006614 289 VQEMKGKGCAL-----TVYTYTELIKGLGRAGRVEDAYGLFMNMLKE----GCKPD-IVLINNLINVLGRAGRLEDALKL 358 (638)
Q Consensus 289 ~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 358 (638)
+++..+..... ...++..+...+.+.|++++|+..|++..+. +..+. ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77665431110 1345666777777788888888777777653 11111 22455566666677888888888
Q ss_pred HHHHH
Q 006614 359 FNKME 363 (638)
Q Consensus 359 ~~~~~ 363 (638)
|++..
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87776
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2.4e-06 Score=81.31 Aligned_cols=127 Identities=11% Similarity=0.028 Sum_probs=58.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH----C-CCCCC-HHHHH
Q 006614 483 MIKHFGKCGRLSDAVDLFNEMKKLRCK-PD----VYTYNALMSGMVRAGMIDDAYSLLRRMEE----D-GCVPD-INSHN 551 (638)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~~~~ 551 (638)
+...+...|++++|+..|++..+.... ++ ..+++.+...|...|++++|...|+++.+ . +..+. ..++.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 333344444445555544444432111 11 12345555555555555555555555542 1 11111 22445
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhh----CCCCCC-HHHHHHHHHHHHccCC-HHHHHHHHHHHH
Q 006614 552 IILNGLAKSGGPKRAMEIFTKMQH----SEIKPD-AVSYNTILGCLSRAGM-FEEAARLMKDMN 609 (638)
Q Consensus 552 ~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~-~~~A~~~~~~m~ 609 (638)
.+...|.+.|++++|..++++..+ .+..+. ..+|..+..++.+.|+ +++|.+.+++..
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 555555555555555555555442 111111 3455555556666663 456655555544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.70 E-value=9.8e-08 Score=90.15 Aligned_cols=100 Identities=6% Similarity=-0.116 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...+..+...+.+.|++++|...++..++.. +.+...+..+..++.+.|++++|...|++..+..+ .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 44566666677777777777777777766642 33566666666677777777777777777666532 25666666666
Q ss_pred HHHhcCCHhHHHHHHHHHHhCC
Q 006614 204 MLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+|...|++++|+..|++..+..
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777777777776665543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.3e-07 Score=87.88 Aligned_cols=188 Identities=11% Similarity=0.020 Sum_probs=104.0
Q ss_pred HHHHcCCCHHHHHHHHHHhhhC----CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC--CC--HHHHHHHH
Q 006614 168 NILGKAKMVNKALSIFYQIKSR----KCK-PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCF--PD--TVTYSALI 238 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~--~~~~~~l~ 238 (638)
..|...|++++|...|.+..+. +.. .-..+|+.+...|.+.|++++|+..|++........ +. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555666665555554332 100 013356666666666777777777666654331100 11 24566666
Q ss_pred HHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHH
Q 006614 239 SAFGKLGRDISAIRLFDEMKEN----GLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGK----GCALT-VYTYTELI 308 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li 308 (638)
..|.. |++++|+..+++..+. |-.. ...+++.+...|.+.|++++|++.+++..+. +..+. ...+..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 66666 7777777777766542 1000 1356677777777777777777777776643 11111 22555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHHHccCCHHHHHHH
Q 006614 309 KGLGRAGRVEDAYGLFMNMLKEGCKP-D---IVLINNLINVLGRAGRLEDALKL 358 (638)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~---~~~~~~li~~~~~~g~~~~A~~~ 358 (638)
..+...|++++|...|++.. ..+.. + ......++..+ ..|+.+.+.++
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 66677788888888887776 32211 1 12344455544 56676666553
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=9.5e-07 Score=79.45 Aligned_cols=131 Identities=10% Similarity=-0.066 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..+..+...+...|++++|...+++.+ .+++.++..+...+.+.|++++|...|++..+.. +.+...|..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 346677788889999999999998763 5688899999999999999999999999998764 34788899999999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCC--------------CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006614 206 MQEGYYEKIHELYNEMCNEGNCFP--------------DTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
...|++++|++.|++..+..+..+ ....+..+...+.+.|++++|.+.|++..+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999988654211 23778889999999999999999999998864
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.3e-06 Score=81.33 Aligned_cols=166 Identities=10% Similarity=0.033 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC---CCC--
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP------SVLSEIVNILGKAKMVNKALSIFYQIKSRKC---KPT-- 194 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~-- 194 (638)
..+...+..+...|++++|.+.+.+.++.... .. ..+..+...+...|++++|+..|.+..+... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555666777777777777777776664221 11 1233344555666677777777666654311 111
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHH---hCCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC----CCC-
Q 006614 195 ANTYNSMILMLMQEGYYEKIHELYNEMC---NEGNCFP--DTVTYSALISAFGKLGRDISAIRLFDEMKENG----LQP- 264 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~~~- 264 (638)
..+|+.+...|...|++++|+..|+++. +..+..+ ...++..+...|...|++++|+..+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3456666666666777777777666665 2111001 11355556666666666666666666554321 000
Q ss_pred CHHHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 006614 265 TAKIYTTLVSIYFKLGEVEKA-LGLVQEM 292 (638)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A-~~~~~~m 292 (638)
-..+|..+...|.+.|++++| ...+++.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 134455555555555555555 4444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.1e-07 Score=72.81 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.+......|.+.|++++|++.|++.++..+ .+...|..+..++.+.|++++|+..+++.++.. +.+...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDP--ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 344445555555555555555555555443 344455555555555555555555555554432 22344455555555
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 006614 277 FKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~ 295 (638)
...|++++|++.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 5555555555555555544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.67 E-value=6.4e-07 Score=76.80 Aligned_cols=128 Identities=9% Similarity=-0.118 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..|..+...+...|++++|...++..++.. +.+..++..+...+...|++++|...|.+..+... .+...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 455666666666777777777666666542 33556666666666666666666666666655432 2555666666666
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHH--HHHHHHHHccCChHHHHHHHHHH
Q 006614 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTY--SALISAFGKLGRDISAIRLFDEM 257 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m 257 (638)
...|++++|.+.|+++....+ .+...+ ...+..+...|++++|++.++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666666665543 233333 22223344555555555555543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.66 E-value=7.7e-07 Score=72.21 Aligned_cols=98 Identities=11% Similarity=-0.009 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..|......+.+.|++++|++.|++.++.. +.++.++..+..++.+.|++++|+..|++..+..+. +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 344455555556666666666665555532 344555555555555555555555555555554322 455555555555
Q ss_pred HhcCCHhHHHHHHHHHHhCC
Q 006614 206 MQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~ 225 (638)
...|++++|++.|++.++..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHC
Confidence 55555555555555555544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-06 Score=75.01 Aligned_cols=127 Identities=12% Similarity=-0.004 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.+..+...+...|++++|...|++.....+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344455555555555555555555555443 344455555555555555555555555555432 22344555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 006614 277 FKLGEVEKALGLVQEMKGKGCALTVYTYTE--LIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~ 327 (638)
...|++++|.+.+++..+..+. +...+.. .+..+...|++++|...+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 5555555555555555544322 2223322 222244445555555555443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.1e-06 Score=79.64 Aligned_cols=169 Identities=14% Similarity=0.059 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHCCC---CCC--H
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT----VTYSALISAFGKLGRDISAIRLFDEMKENGL---QPT--A 266 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~ 266 (638)
..+...+..+...|++++|.+.+++..+.....++. ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344455666777778888877777776654321111 2233455556677788888888877764321 111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-C
Q 006614 267 KIYTTLVSIYFKLGEVEKALGLVQEMKG---KGCA-L--TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG----CKP-D 335 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p-~ 335 (638)
.+|+.+...|...|++++|...+++..+ .... + ...++..+...|...|++++|...+++.++.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4777788888888888888888887762 2111 1 12577778888888888888888888876531 111 1
Q ss_pred HHHHHHHHHHHHccCCHHHH-HHHHHHHHH
Q 006614 336 IVLINNLINVLGRAGRLEDA-LKLFNKMEA 364 (638)
Q Consensus 336 ~~~~~~li~~~~~~g~~~~A-~~~~~~~~~ 364 (638)
..++..+..+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56778888888888988888 666776543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-07 Score=87.77 Aligned_cols=193 Identities=11% Similarity=-0.017 Sum_probs=124.8
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006614 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
+...+..+...+.+.|++++|+..|.+..+..+ .+...|..+...|.+.|++++|+..+++..+..+ .+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 456777888888899999999999998887643 2788888899999999999999999999888765 5778888888
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 239 SAFGKLGRDISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRV 317 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 317 (638)
.++...|++++|...|++..+.. |+ ...+...+....+. .++.. +..........+......+... ..|+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHH
Confidence 89999999999999998877642 21 11111122211111 11111 1122222333344443333222 26788
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcc-CCHHHHHHHHHHHHH
Q 006614 318 EDAYGLFMNMLKEGCKPD-IVLINNLINVLGRA-GRLEDALKLFNKMEA 364 (638)
Q Consensus 318 ~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~-g~~~~A~~~~~~~~~ 364 (638)
++|.+.++...+. .|+ ......+...+.+. +.+++|.++|..+.+
T Consensus 152 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888888777765 333 33334444444444 567778888877654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2e-06 Score=69.30 Aligned_cols=97 Identities=19% Similarity=0.267 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI 275 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 275 (638)
..+..+...+...|++++|.+.|+++.+..+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3344444444444444444444444444332 233444444444444444444444444444331 1233444444444
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006614 276 YFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~ 295 (638)
+...|++++|.+.++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 44444444444444444433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-06 Score=69.29 Aligned_cols=99 Identities=10% Similarity=0.077 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+...|++++|.+.++++++.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455556666666666666666666655532 3345555555555666666666666665555442 2245555555555
Q ss_pred HHhcCCHhHHHHHHHHHHhCC
Q 006614 205 LMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+...|++++|...|+++....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 556666666666665555544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-06 Score=71.52 Aligned_cols=117 Identities=9% Similarity=-0.061 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
.+...|..+...+.+.|++++|...++..++.. +.+..++..+...+...|++++|...|++..+... .+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 345666777777777777777777777766542 33556666666666666777777777666665432 2556666666
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
..+.+.|++++|.+.|++..+..+ .+...+..+...+..
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDS--SCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCG--GGTHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHH
Confidence 666666666666666666665543 233444444444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.9e-07 Score=80.56 Aligned_cols=155 Identities=8% Similarity=-0.000 Sum_probs=67.3
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC----CCCCCHHHHHHHHHHHHccCCh
Q 006614 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG----NCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
..|++++|.+.++.+... .......+..+...+...|++++|...|++..... ........+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 11244455555555566666666666665554411 0001223444455555555555
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCC
Q 006614 248 ISAIRLFDEMKEN----GLQP--TAKIYTTLVSIYFKLGEVEKALGLVQEMKGK----GCA-LTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 248 ~~A~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~ 316 (638)
++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++.... +.. .-..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 5555555544332 1011 1223444555555555555555555544321 100 001223344444555555
Q ss_pred HHHHHHHHHHH
Q 006614 317 VEDAYGLFMNM 327 (638)
Q Consensus 317 ~~~A~~~~~~~ 327 (638)
+++|...+++.
T Consensus 163 ~~~A~~~~~~a 173 (203)
T 3gw4_A 163 LLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-06 Score=72.95 Aligned_cols=95 Identities=9% Similarity=0.032 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
.+..+...+.+.|++++|+..|+++.+..+. +...|..+..+|...|++++|++.|++.....+ .+...|..+..++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P--~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK--NDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHH
Confidence 3444444455555555555555555444222 444455555555555555555555555554443 2334444445555
Q ss_pred HccCChHHHHHHHHHHHH
Q 006614 242 GKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~ 259 (638)
...|++++|+..|++..+
T Consensus 115 ~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.5e-06 Score=76.77 Aligned_cols=127 Identities=11% Similarity=-0.018 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 006614 200 SMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT--AKIYTTLVSIYF 277 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~ 277 (638)
.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG---SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 34445555555555555555554433 222234444445555555555555555333321 010 123444555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 278 KLGEVEKALGLVQEMKGKGCALT--VYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 278 ~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
..|++++|++.|++.......|. .........++.+.|+.++|...|+++...
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555555555555543221122 223334444455555555555555555554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.6e-06 Score=70.95 Aligned_cols=97 Identities=20% Similarity=0.137 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006614 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 274 (638)
...+..+...+.+.|++++|++.|++..+..+ .+...+..+...+...|++++|++.+++..+.. +.+...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP--KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 33344444444444444444444444444332 233344444444444444444444444444321 123334444444
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 006614 275 IYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~ 294 (638)
.+.+.|++++|.+.+++..+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 44444444444444444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-06 Score=69.98 Aligned_cols=118 Identities=10% Similarity=-0.075 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+...|++++|...++..+... +.+...+..+...+...|++++|...+.+..+... .+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 3455556666666666666666666655532 33455555555666666666666666665554422 245555555555
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR 246 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 246 (638)
+...|++++|...|++..+..+ .+...+..+...+.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP--DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHhc
Confidence 6666666666666665555443 344444444444444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.3e-06 Score=69.60 Aligned_cols=115 Identities=12% Similarity=0.055 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.+..+...+...|++++|.+.|++.....+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNP--ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 344444444445555555555554444332 234444444444444444444444444444331 12334444444444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006614 277 FKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG 315 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 315 (638)
...|++++|.+.+++..+..+. +...+..+...+.+.|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 4444444444444444443221 3333444444443333
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-06 Score=79.24 Aligned_cols=190 Identities=8% Similarity=-0.055 Sum_probs=144.8
Q ss_pred ccchHHHHHHHHHhhhCCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHhC------------CCC-----
Q 006614 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMAL-------IRCLDETRMIGVMWKSIQDMVRS------------TCV----- 157 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~------------~~~----- 157 (638)
..+...|.+.|..+.... +-....|+.+ ..++.+.++..+++..++.-++. |..
T Consensus 19 ~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred CCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 467788999999887765 5567899888 57777777777777766665541 110
Q ss_pred ---CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC--HH
Q 006614 158 ---MGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD--TV 232 (638)
Q Consensus 158 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 232 (638)
.-......+...+...|++++|.++|..+...+ |+......+...+.+.|++++|+..|+....... |. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d--~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPD--KFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSC--HHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCC--cccHHH
Confidence 002345567788899999999999999998764 3333667777889999999999999986655321 21 34
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006614 233 TYSALISAFGKLGRDISAIRLFDEMKENGLQPT--AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGC 297 (638)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 297 (638)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 678889999999999999999999986543253 44677788899999999999999999998754
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.53 E-value=8.1e-07 Score=74.44 Aligned_cols=102 Identities=6% Similarity=-0.096 Sum_probs=91.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
.+...|..+...+.+.|++++|...|+..+... +.++..|..+..++.+.|++++|+..|++..+..+. ++..|..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHH
Confidence 356788899999999999999999999999864 667899999999999999999999999999987544 788899999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
.+|.+.|++++|+..|++..+..+
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999998763
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.6e-06 Score=72.60 Aligned_cols=100 Identities=6% Similarity=-0.154 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...+..+...+.+.|++++|...|+..+... +.++..+..+..++.+.|++++|+..|++.....+. +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 45566667777777777777777777776643 446667777777777777777777777777665332 5666677777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCC
Q 006614 204 MLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+|...|++++|++.|++..+..
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 7777777777777777776654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-06 Score=77.55 Aligned_cols=158 Identities=11% Similarity=0.014 Sum_probs=116.7
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN----GLQP-TAKIYTTLVSIYFKL 279 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~ 279 (638)
+...|++++|.+.++.+... +. .....+..+...+...|++++|...+++..+. |..+ ...++..+...+...
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PA-TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TT-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHhcCC-hH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 35689999999966665442 21 46678899999999999999999999988762 2122 356788899999999
Q ss_pred CCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHc
Q 006614 280 GEVEKALGLVQEMKGK----GCAL--TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC-KPD----IVLINNLINVLGR 348 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~ 348 (638)
|++++|.+.+++..+. +..+ ....+..+...+...|++++|...+++..+... ..+ ..++..+...+..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 9999999999887653 2111 245677888899999999999999998875311 112 2346778889999
Q ss_pred cCCHHHHHHHHHHHHH
Q 006614 349 AGRLEDALKLFNKMEA 364 (638)
Q Consensus 349 ~g~~~~A~~~~~~~~~ 364 (638)
.|++++|.+.+++..+
T Consensus 160 ~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARD 175 (203)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999988765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2.8e-06 Score=82.37 Aligned_cols=124 Identities=6% Similarity=-0.071 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG--------------PSVLSEIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
+...|..+...+.+.|++++|...|++.++...... ..++..+..++.+.|++++|+..|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677777777788888888888877776431111 244455555555555555555555555444
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHH
Q 006614 190 KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISA 250 (638)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 250 (638)
.+ .+...|..+..+|...|++++|+..|+++.+..+ .+...+..+...+.+.|+.++|
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP--NNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 22 1444455555555555555555555555544433 3344444444444444444444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.47 E-value=3.1e-06 Score=82.10 Aligned_cols=123 Identities=11% Similarity=-0.032 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC--------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT--------------ANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
...+..+...+.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..|+++++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34555566666666666666666666655432211 3555666666666666666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006614 226 NCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKA 285 (638)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 285 (638)
+ .+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.+.|+.++|
T Consensus 227 p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 S--NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3 455555556666666666666666666555542 22444555555555555555555
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-06 Score=75.94 Aligned_cols=118 Identities=11% Similarity=0.088 Sum_probs=48.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHhcCCH--hHH
Q 006614 138 TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM-LMQEGYY--EKI 214 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A 214 (638)
.|++++|...++..++.. +.+...+..+...+...|++++|...|++..+.... +...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHH
Confidence 334444444444443321 233344444444444444444444444444433211 33344444444 3344444 444
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
+..|+++....+ .+...+..+...+...|++++|...++++.+
T Consensus 101 ~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDS--NEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 444444444332 2334444444444444444444444444444
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=9.9e-05 Score=69.96 Aligned_cols=183 Identities=11% Similarity=0.040 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC--HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC-hHHHHH
Q 006614 176 VNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY--YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR-DISAIR 252 (638)
Q Consensus 176 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~ 252 (638)
+++++.+++.+....++ +..+|+.-...+.+.|+ ++++++.++++.+..+ .|...|+.-.-.+...|. ++++++
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp--rNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADE--RNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 45666666666665433 66666666666666663 6677777777776654 566666655555556666 466777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----
Q 006614 253 LFDEMKENGLQPTAKIYTTLVSIYFKL--------------GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA---- 314 (638)
Q Consensus 253 ~~~~m~~~g~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---- 314 (638)
.++.+.+.. +-|...|+.....+.+. +.++++++.+.......+. |...|+-+-..+.+.
T Consensus 167 ~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 167 FTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcc
Confidence 777766653 23566666555554443 3466677777776665544 555555433333333
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHccCCHHHHHHHHHHHHH
Q 006614 315 -------GRVEDAYGLFMNMLKEGCKPDIVLINNLIN---VLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 315 -------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~---~~~~~g~~~~A~~~~~~~~~ 364 (638)
+.++++++.++++.+..+. +...+..++. .....|..+++...+.++.+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3466777777777765432 2222222221 11234556666667766665
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.6e-06 Score=73.98 Aligned_cols=119 Identities=11% Similarity=0.092 Sum_probs=62.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 006614 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKG-LGRAGRV--EDA 320 (638)
Q Consensus 244 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~~A 320 (638)
.|++++|...+++..+.. +.+...|..+...|...|++++|...+++..+..+. +...+..+... +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHH
Confidence 445555555555554432 224455555555555555555555555555544322 44455555555 4555555 666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 006614 321 YGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEAL 365 (638)
Q Consensus 321 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 365 (638)
...+++..+..+. +...+..+...|...|++++|...++.+.+.
T Consensus 101 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 6666666554332 4555555666666666666666666666553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-06 Score=73.75 Aligned_cols=97 Identities=15% Similarity=0.176 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006614 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 274 (638)
...+..+...+.+.|++++|+..|+++....+ .+...|..+..++...|++++|+..|++..+.. +.+...+..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH--YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 33444445555555555555555555554443 344445555555555555555555555554432 123444444555
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 006614 275 IYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~ 294 (638)
+|...|++++|.+.|++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.4e-06 Score=67.74 Aligned_cols=97 Identities=9% Similarity=-0.042 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..|......+.+.|++++|...|++.++.. +.++..+..+..++.+.|++++|+..|++..+..+. +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 345555556666666666666666655532 334555555566666666666666666655554322 455555555566
Q ss_pred HhcCCHhHHHHHHHHHHhC
Q 006614 206 MQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~ 224 (638)
...|++++|++.|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6666666666666555543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=3.9e-07 Score=81.04 Aligned_cols=99 Identities=12% Similarity=-0.022 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC--------------HHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD--------------TVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
...+..+...+.+.|++++|++.|++.....+..++ ...+..+...+...|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344556666667777777777777777664432121 133344444444444444444444444433
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006614 261 GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 261 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 294 (638)
. +.+...+..+..+|...|++++|.+.|++..+
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 1 12333444444444444444444444444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.2e-06 Score=71.59 Aligned_cols=102 Identities=11% Similarity=-0.001 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...|..+...+.+.|++++|+..|++.++.. +.+...+..+..+|.+.|++++|+..|++..+.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45678888888899999999999998888753 557788888888888999999999999888877433 6888888888
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCC
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNC 227 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~ 227 (638)
+|...|++++|++.|++..+..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC
Confidence 889999999999999888876653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.4e-05 Score=63.41 Aligned_cols=97 Identities=18% Similarity=0.056 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI 275 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 275 (638)
..+..+...+...|++++|...|++.....+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3444445555555555555555555554433 344444555555555555555555555554432 1234445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006614 276 YFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~ 295 (638)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 55555555555555555444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-05 Score=63.73 Aligned_cols=98 Identities=11% Similarity=-0.036 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..|..+...+...|++++|...++..+... +.++..+..+...+...|++++|...+++..+..+ .+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 455555666666666666666666655532 33455555555566666666666666665555422 2455555555566
Q ss_pred HhcCCHhHHHHHHHHHHhCC
Q 006614 206 MQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~ 225 (638)
...|++++|.+.|++..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 66666666666666655544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.38 E-value=6.5e-06 Score=66.69 Aligned_cols=95 Identities=17% Similarity=0.124 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.|..+...+.+.|++++|++.|++..+..+ .+...|..+...+.+.|++++|+..+++..+.. +.+...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344444444555555555555555544433 344444444444555555555555555444432 12344444444555
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 006614 277 FKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~ 294 (638)
...|++++|.+.+++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 555555555555544443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.37 E-value=3.3e-06 Score=70.20 Aligned_cols=100 Identities=8% Similarity=-0.118 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...+..+...+.+.|++++|...|+..+... +.++..+..+..++.+.|++++|+..|++.....+. +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 34455666677777777777777777776643 456667777777777777777777777777665432 5666667777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCC
Q 006614 204 MLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+|...|++++|++.|++..+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777777777777776654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00041 Score=65.72 Aligned_cols=219 Identities=6% Similarity=-0.010 Sum_probs=165.0
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 006614 105 INVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRM----------IGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK 174 (638)
Q Consensus 105 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (638)
.+.|+.++..+.... |.+..+|+.--.++...+. ++++...++.++... +-+..+|+.-...+.+.|
T Consensus 46 s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 46 DESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp SHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccC
Confidence 457888888776554 5567788877666655544 678888898888753 667788888777777777
Q ss_pred --CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc-------
Q 006614 175 --MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY-YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL------- 244 (638)
Q Consensus 175 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 244 (638)
.+++++.+++++.+..+. |..+|+.-.-++...|. ++++++.++++.+.++ .|...|+.....+.+.
T Consensus 123 ~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p--~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 123 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF--SNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHHSCCC---
T ss_pred cccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhhhccccc
Confidence 489999999999988654 88899988888888888 6999999999999876 6888887766666554
Q ss_pred -------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006614 245 -------GRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL-----------GEVEKALGLVQEMKGKGCALTVYTYTE 306 (638)
Q Consensus 245 -------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~ 306 (638)
+.++++++.+....... +-|...|+.+-..+.+. +.++++++.++++.+..+. +...+..
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~ 277 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE-NKWCLLT 277 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc-cchHHHH
Confidence 45789999999988764 44788888776666665 4588999999999987543 4444333
Q ss_pred HHH---HHHhcCCHHHHHHHHHHHHHcC
Q 006614 307 LIK---GLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 307 li~---~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
++. .....|..+++...+.++++-+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 278 IILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 322 2234677788888888888754
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.8e-06 Score=66.30 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=23.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006614 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
+.+.+.+.|++++|+..|++..+..+. +...|+.+..+|.+.|++++|++.|++.+
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444444444444333211 33444444444444444444444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.2e-05 Score=65.44 Aligned_cols=102 Identities=7% Similarity=-0.138 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG----PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANT 197 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 197 (638)
+.+...|..+...+...|++++|...+++.++. .|+ ...+..+...+...|++++|...|++..+... .+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHH
Confidence 346677888888888888888888888888773 444 56777777778888888888888887766532 25677
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 198 YNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 198 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
+..+..++...|++++|...|++.....+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 77777788888888888888888777653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.32 E-value=6.6e-06 Score=64.71 Aligned_cols=96 Identities=14% Similarity=0.046 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--CHHHHHHHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFP--DTVTYSALIS 239 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~ 239 (638)
.+..+...+.+.|++++|...|++..+... .+...+..+...+...|++++|++.|++..+..+ . +...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIE--DEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--ccchHHHHHHHHH
Confidence 344444444555555555555555444321 2444455555555555555555555555554432 2 3444555555
Q ss_pred HHHcc-CChHHHHHHHHHHHHC
Q 006614 240 AFGKL-GRDISAIRLFDEMKEN 260 (638)
Q Consensus 240 ~~~~~-g~~~~A~~~~~~m~~~ 260 (638)
.+... |++++|.+.++...+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 55555 5555555555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-05 Score=65.28 Aligned_cols=106 Identities=5% Similarity=-0.061 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--CC----HHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PT----ANTY 198 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~ 198 (638)
..++..+...+.+.|++++|+..|++.++.. +.++..|..+..+|.+.|++++|+..|++..+..+. ++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4577888999999999999999999998863 567889999999999999999999999998765221 11 2467
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHH
Q 006614 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTY 234 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 234 (638)
..+..++...|++++|++.|++.+... ||....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~---~~~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEF---RDPELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS---CCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC---cCHHHH
Confidence 778888889999999999999988754 555443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-05 Score=71.26 Aligned_cols=119 Identities=10% Similarity=-0.029 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP----------------SVLSEIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
..|..+...+.+.|++++|...|++.++.. +.++ .++..+..++.+.|++++|+..+++..+.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 456666677777777777777777776632 1121 34444445555555555555555554443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChH
Q 006614 190 KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI 248 (638)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 248 (638)
.. .+...+..+..+|...|++++|++.|++..+..+ .+...+..+...+...++.+
T Consensus 118 ~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 118 DK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP--NNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp ST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHH
T ss_pred Cc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHH
Confidence 21 2444444455555555555555555555544432 23334444444444333333
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.30 E-value=7.9e-06 Score=67.88 Aligned_cols=94 Identities=15% Similarity=-0.031 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+..+...+.+.|++++|...|++.....+ .+...|..+..+|.+.|++++|+..|++.....+ .+...+..+..++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDI--NEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHH
Confidence 34444445555555555555555544422 2444555555555555555555555555555443 33444444555555
Q ss_pred ccCChHHHHHHHHHHHH
Q 006614 243 KLGRDISAIRLFDEMKE 259 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~ 259 (638)
..|++++|...|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.8e-05 Score=65.10 Aligned_cols=93 Identities=14% Similarity=-0.036 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
.+..+...+...|++++|...|.+.....+ .+...|..+...+...|++++|+..|++..+..+ .+...+..+...+
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~ 87 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--hhHHHHHHHHHHH
Confidence 333333333333333333333333333221 1333333444444444444444444444433332 2333333333334
Q ss_pred HccCChHHHHHHHHHH
Q 006614 242 GKLGRDISAIRLFDEM 257 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m 257 (638)
...|++++|...|++.
T Consensus 88 ~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 88 LEMESYDEAIANLQRA 103 (137)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 4444444444433333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.27 E-value=8.5e-06 Score=64.05 Aligned_cols=98 Identities=11% Similarity=0.086 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 006614 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP--TAKIYTTL 272 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l 272 (638)
...+..+...+...|++++|...|++..+..+ .+...+..+...+...|++++|.+.+++..+.. +. +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP--EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34455555666666666666666666665543 345555555555666666666666666555542 12 34455555
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhC
Q 006614 273 VSIYFKL-GEVEKALGLVQEMKGK 295 (638)
Q Consensus 273 i~~~~~~-g~~~~A~~~~~~m~~~ 295 (638)
...+.+. |++++|.+.++.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 5555555 5555555555555544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=5.9e-05 Score=76.13 Aligned_cols=196 Identities=11% Similarity=0.002 Sum_probs=131.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CcH
Q 006614 415 DGFCKTNRVEKAHLLLEEMEEKGFPPC----------------PAAYCSLINGYGKAKRYEAANELFLELKEYCGC-SSA 477 (638)
Q Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~ 477 (638)
..+.+.|++++|++.|.++.+...... ..++..++..|.+.|++++|.+.+..+.+.... ++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 446677888888888888876531111 123677888888888888888888877653111 111
Q ss_pred ----HHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CC--C
Q 006614 478 ----RVYAVMIKHFGKCGRLSDAVDLFNEMKK----LRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEED--GC--V 544 (638)
Q Consensus 478 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~--~ 544 (638)
.+.+.+...+...|+++.|..++..... .+..+. ..++..+...|...|++++|..+++++... +. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2334444455567888888888877643 222222 456777888888899999999988887653 11 1
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhC--CC-CC-C--HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 545 P-DINSHNIILNGLAKSGGPKRAMEIFTKMQHS--EI-KP-D--AVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 545 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~-~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
+ ...++..++..|...|++++|..++++.... .+ .| . ...+..+...+...|++++|...+.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 1457778888888999999999988887641 11 12 1 24566667777888999998887776653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-05 Score=66.20 Aligned_cols=102 Identities=6% Similarity=-0.111 Sum_probs=91.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+.+...|..+...+...|++++|...++..+... +.++..+..+..++...|++++|...|++..+..+. +...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 3568899999999999999999999999988864 557889999999999999999999999999887543 78899999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
..++...|++++|+..|++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999999988754
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.9e-05 Score=63.83 Aligned_cols=98 Identities=18% Similarity=0.047 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHH
Q 006614 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT----ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTY 234 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 234 (638)
+...+..+...+.+.|++++|...|++..+. .|+ ...|..+...|...|++++|+..+++..+..+ .+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG--GDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--CCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc--cCHHHH
Confidence 4455566666666666666666666666654 233 45555566666666666666666666655443 345555
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 235 SALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 235 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
..+...+...|++++|.+.|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 55555666666666666666655553
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.24 E-value=5.3e-05 Score=76.43 Aligned_cols=167 Identities=10% Similarity=-0.034 Sum_probs=109.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHH----CCCCCC-HHH
Q 006614 198 YNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT----VTYSALISAFGKLGRDISAIRLFDEMKE----NGLQPT-AKI 268 (638)
Q Consensus 198 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~~~-~~~ 268 (638)
+..++..|.+.|++++|.+.+..+.......++. ...+.+...+...|+.++|..+++.... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5667777888888888888877765432211222 1223333444456788888888776653 222222 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC-C--HH
Q 006614 269 YTTLVSIYFKLGEVEKALGLVQEMKGK----GCAL-TVYTYTELIKGLGRAGRVEDAYGLFMNMLKE---GCKP-D--IV 337 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p-~--~~ 337 (638)
+..+...|...|++++|..++++.... +-.+ ....+..++..|...|++++|..++++.... ...| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 777888888888888888888876542 1111 2456777888888999999999888877652 1111 1 23
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 338 LINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 338 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
.+..+...+...|++++|...|.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 556667777888899988887776643
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.4e-05 Score=68.23 Aligned_cols=96 Identities=17% Similarity=-0.015 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
..+..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..|++.++..+ .+...|..+...
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP--KYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Confidence 34444444555555555555555555443221 444445555555555555555555555544433 334444444444
Q ss_pred HHccCChHHHHHHHHHHHH
Q 006614 241 FGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~ 259 (638)
+...|++++|+..|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 4444555555444444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.22 E-value=9.6e-06 Score=65.87 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=21.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006614 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|+++.
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 65 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333333444444444444333321 1133333444444444444444444444433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.2e-05 Score=65.32 Aligned_cols=111 Identities=10% Similarity=0.009 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--CC----HHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PT----ANTY 198 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~ 198 (638)
...|..+...+...|++++|...++..+... +.++..+..+...+...|++++|...|++..+.... ++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4678889999999999999999999998863 567888999999999999999999999998776321 22 7788
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006614 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
..+...+...|++++|.+.|+++.+.. |+......+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~l~~ 120 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH---RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC---CCHHHHHHHHH
Confidence 889999999999999999999998865 45554444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.2e-05 Score=64.49 Aligned_cols=96 Identities=4% Similarity=-0.121 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 006614 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
+..+...+.+.|++++|+..++..++.. +.+...+..+..++.+.|++++|+..|++..+..+. +...+..+..++.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3444555556666666666666655532 335555555666666666666666666665554322 45555556666666
Q ss_pred cCCHhHHHHHHHHHHhCC
Q 006614 208 EGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~ 225 (638)
.|++++|+..|++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 666666666666655543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-05 Score=64.34 Aligned_cols=92 Identities=12% Similarity=-0.040 Sum_probs=48.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006614 165 EIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
.+...+.+.|++++|+..|++..+..+. +...|..+..++...|++++|+..|++..+..+ .+...+..+...+...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHc
Confidence 3444455555555555555555544222 455555555555555555555555555555443 3444555555555555
Q ss_pred CChHHHHHHHHHHHH
Q 006614 245 GRDISAIRLFDEMKE 259 (638)
Q Consensus 245 g~~~~A~~~~~~m~~ 259 (638)
|++++|+..+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.8e-06 Score=67.86 Aligned_cols=88 Identities=11% Similarity=-0.025 Sum_probs=47.4
Q ss_pred cCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 006614 138 TRMIGVMWKSIQDMVRST--CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIH 215 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 215 (638)
.|++++|+..|++.++.+ -+.+..++..+..++.+.|++++|+..|++..+..+. +...+..+..++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 455566666666655532 1223445555666666666666666666666554322 4555556666666666666666
Q ss_pred HHHHHHHhCCC
Q 006614 216 ELYNEMCNEGN 226 (638)
Q Consensus 216 ~~~~~~~~~~~ 226 (638)
+.|++.....+
T Consensus 82 ~~~~~al~~~p 92 (117)
T 3k9i_A 82 ELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 66666555443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.11 E-value=9e-05 Score=59.94 Aligned_cols=95 Identities=11% Similarity=-0.036 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC---HHHHHHHH
Q 006614 129 MALIRCLDETRMIGVMWKSIQDMVRSTCVMGP---SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT---ANTYNSMI 202 (638)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 202 (638)
..+...+.+.|++++|...++.+++.. +.++ ..+..+..++.+.|++++|...|+++.+..+. + ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 344556666677777777776666532 2222 45556666666666666666666666554322 2 45566666
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCC
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.++.+.|++++|...|+++.+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 66666666666666666666654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.1e-05 Score=66.61 Aligned_cols=96 Identities=9% Similarity=-0.142 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-C----CH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCV-MG----PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK-P----TA 195 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~ 195 (638)
.++..+...+...|++++|...+++.++.... .+ ..++..+...+...|++++|...+++..+.... . ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45666666667777777777776665542100 11 124444455555555555555555544322000 0 12
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEM 221 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 221 (638)
..+..+...+...|++++|.+.+++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 23444444444445555444444444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.08 E-value=2.2e-05 Score=79.96 Aligned_cols=119 Identities=10% Similarity=-0.098 Sum_probs=54.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHh
Q 006614 133 RCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYE 212 (638)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 212 (638)
..+.+.|++++|.+.+++.++.. +.+..++..+..+|.+.|++++|+..|++..+.... +...|..+..+|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 34445555555555555555431 333445555555555555555555555555544221 4445555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHH--HHccCChHHHHHHHH
Q 006614 213 KIHELYNEMCNEGNCFPDTVTYSALISA--FGKLGRDISAIRLFD 255 (638)
Q Consensus 213 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 255 (638)
+|++.|++..+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555555544331 22222222222 444455555555444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.7e-05 Score=67.24 Aligned_cols=97 Identities=13% Similarity=0.012 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-CC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC----HH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCK-PT----ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD----TV 232 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~ 232 (638)
++..+...+...|++++|...+.+..+.... ++ ..++..+...+...|++++|.+.+++........++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555566666666777766666665443100 01 134555666666666666666666665432110011 22
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHH
Q 006614 233 TYSALISAFGKLGRDISAIRLFDEMK 258 (638)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 258 (638)
.+..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444455555555555554443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.05 E-value=4.9e-05 Score=77.06 Aligned_cols=138 Identities=9% Similarity=-0.103 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+.+.|++++|...|++.++....... + ..+... +... .....|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~----~~~~----~~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESK----ASES----FLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHH----HHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHH----HHHH----HHHHHHHHHHHH
Confidence 346666777777777777777777776653211110 0 000000 0000 013445555555
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
|.+.|++++|+..|++++...+ .+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.+.++.++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDS--ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555443 345555555555555555555555555555432 1234455555555555555554
Q ss_pred HH
Q 006614 285 AL 286 (638)
Q Consensus 285 A~ 286 (638)
+.
T Consensus 404 a~ 405 (457)
T 1kt0_A 404 RD 405 (457)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0001 Score=59.55 Aligned_cols=96 Identities=7% Similarity=-0.019 Sum_probs=55.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC-HHHHHHHHH
Q 006614 164 SEIVNILGKAKMVNKALSIFYQIKSRKCKPTA---NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD-TVTYSALIS 239 (638)
Q Consensus 164 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~ 239 (638)
..+...+.+.|++++|...|+++.+..+. +. ..+..+..++.+.|++++|+..|+++.+..+..+. ...+..+..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 33445556666666666666666554222 22 45555666666666666666666666665431111 344555566
Q ss_pred HHHccCChHHHHHHHHHHHHC
Q 006614 240 AFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~ 260 (638)
.+...|++++|...|+++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.01 E-value=5.7e-05 Score=74.04 Aligned_cols=139 Identities=9% Similarity=-0.011 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..|..+...+.+.|++++|...|++.++.. +.. ......+++ .+. .+.+...|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~-------~~~-~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADG-------AKL-QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHH-------GGG-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHH-------HHH-HHHHHHHHHHHHHHH
Confidence 356677777778888888888777766510 000 000000000 001 011445566666666
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006614 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKA 285 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 285 (638)
.+.|++++|++.+++.++..+ .+...|..+..++...|++++|++.|++..+.. +.+...+..+...+.+.++.+++
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDP--SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777666666553 455666666666666677777777666666542 22455566666666666666555
Q ss_pred HH
Q 006614 286 LG 287 (638)
Q Consensus 286 ~~ 287 (638)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.01 E-value=6.8e-05 Score=76.03 Aligned_cols=135 Identities=13% Similarity=0.066 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC-------------HHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD-------------TVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
....|..+...+.+.|++++|+..|++.++..+..++ ...|..+..++.+.|++++|+..+++..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5666777777777777777777777777765432111 578999999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHc
Q 006614 261 GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG-LFMNMLKE 330 (638)
Q Consensus 261 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~ 330 (638)
. +.+...|..+..+|...|++++|+..|++..+..+. +...+..+...+.+.++.+++.+ .+..|...
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 347889999999999999999999999999987654 66788888889999999888764 56666543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.00 E-value=2.3e-05 Score=79.84 Aligned_cols=122 Identities=15% Similarity=0.049 Sum_probs=96.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006614 165 EIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
.+...+.+.|++++|+..|++..+... .+..+|..+..+|.+.|++++|++.|++..+..+ .+...+..+..++...
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHc
Confidence 344566788999999999999988743 3688999999999999999999999999999875 6788899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 006614 245 GRDISAIRLFDEMKENGLQPTAKIYTTLVSI--YFKLGEVEKALGLVQ 290 (638)
Q Consensus 245 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 290 (638)
|++++|++.+++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999988753 2244556666555 888899999999988
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.4e-05 Score=63.71 Aligned_cols=87 Identities=13% Similarity=0.085 Sum_probs=57.8
Q ss_pred cCCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHH
Q 006614 172 KAKMVNKALSIFYQIKSRK--CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDIS 249 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 249 (638)
..|++++|+..|++..+.+ .+.+...+..+...|...|++++|++.|++..+..+ .+...+..+..++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--NHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCHHH
Confidence 3567777777777777653 122456677777777777777777777777777665 456667777777777777777
Q ss_pred HHHHHHHHHHC
Q 006614 250 AIRLFDEMKEN 260 (638)
Q Consensus 250 A~~~~~~m~~~ 260 (638)
|+..+++..+.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777776654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00049 Score=71.41 Aligned_cols=173 Identities=11% Similarity=0.008 Sum_probs=116.2
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC----------HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006614 175 MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY----------YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 175 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
..++|++.++++.+..++ +..+|+.-..++...|+ ++++++.++.+.+..+ .+..+|+.-.-.+.+.
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--K~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHc
Confidence 335667777777666433 56666666666666665 7777777777777665 5666666666666677
Q ss_pred C--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-------
Q 006614 245 G--RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG-EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA------- 314 (638)
Q Consensus 245 g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~------- 314 (638)
| +++++++.++++.+.. +-|..+|+.-...+.+.| .++++++.++++.+..+. +...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 7 5577777777777754 236677777777777777 777777777777776655 666666665555442
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006614 315 -------GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLE 353 (638)
Q Consensus 315 -------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 353 (638)
+.++++++.+++.+...+. |...|+.+-..+.+.+..+
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 4567888888888876554 6677777776666666533
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0001 Score=60.99 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhC-------CCCCCCHHHH----HHHHHHHHccCChHHHHHHHHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNE-------GNCFPDTVTY----SALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
.|+.+..++.+.|++++|+..|++.++. .+ .+...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p--d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ--DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS--THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC--chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777777777777777777777777665 43 344556 6666677777777777777766654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00011 Score=62.53 Aligned_cols=99 Identities=5% Similarity=-0.095 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CC----------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRS-------TC----------VMGPSVLSEIVNILGKAKMVNKALSIFYQIK 187 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 187 (638)
...+......+.+.|++++|+..|...+.. .. +.+..++..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777788888888999888888887663 00 1112334444444444444444444444444
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006614 188 SRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 188 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
+..+ .+...|..+..+|...|++++|+..|++....
T Consensus 91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4321 13444444444444444444444444444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.94 E-value=9.1e-05 Score=72.58 Aligned_cols=138 Identities=8% Similarity=0.010 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI 275 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 275 (638)
..+..+...+.+.|++++|++.|++.++... +.. .... .++..+. -+.+..+|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~---~~~----------~~~~-------~~~~~~~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE---GSR----------AAAE-------DADGAKL-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HHH----------HHSC-------HHHHGGG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh---cCc----------cccC-------hHHHHHH-HHHHHHHHHHHHHH
Confidence 4466777888888888888888888776210 000 0000 0011000 01133455555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 006614 276 YFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDA 355 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 355 (638)
|.+.|++++|++.+++..+..+. +...|..+..+|...|++++|...|++..+..+. +...+..+...+.+.++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666555554332 4555555555666666666666666665554322 444555555555555555544
Q ss_pred H
Q 006614 356 L 356 (638)
Q Consensus 356 ~ 356 (638)
.
T Consensus 361 ~ 361 (370)
T 1ihg_A 361 E 361 (370)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00011 Score=62.53 Aligned_cols=98 Identities=15% Similarity=0.042 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhC--------C---------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSR--------K---------CKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
..+......+.+.|++++|+..|.+.... . .+.+...|..+..+|.+.|++++|+..+++.+.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45666778888899999999999887664 0 011345677777777788888888888888777
Q ss_pred CCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 224 EGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
..+ .+...|..+..++...|++++|...|++..+.
T Consensus 92 ~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 REE--TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCC--cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 664 56777777777777778888887777777764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0011 Score=68.78 Aligned_cols=171 Identities=10% Similarity=0.060 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--
Q 006614 459 EAANELFLELKEYCGCSSARVYAVMIKHFGKCGR----------LSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAG-- 526 (638)
Q Consensus 459 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-- 526 (638)
++|.+.++++... .+.+..+|+.--.++...|+ +++++..++++.+.. +.+..+|+.-...+.+.|
T Consensus 46 eeal~~~~~~l~~-nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGA-NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHH-CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 4445555555543 22334444444444444444 667777777776653 335566666666666677
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc----------
Q 006614 527 MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSG-GPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRA---------- 595 (638)
Q Consensus 527 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---------- 595 (638)
+++++++.++++.+.... |...|+.-...+.+.| .++++++.++++++.... |...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence 557777777777776433 6777777777777777 777777777777765432 566676665555542
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCcc
Q 006614 596 ----GMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDEDR 634 (638)
Q Consensus 596 ----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 634 (638)
+.+++|.+.+++..... +-|...|...-..+.+.+..+
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 55788888888887642 445667777777776666543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00015 Score=60.02 Aligned_cols=100 Identities=8% Similarity=-0.038 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC------CHH-----HHHHHHHHHHcCCCHHHHHHHHHHhhhC----
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVM------GPS-----VLSEIVNILGKAKMVNKALSIFYQIKSR---- 189 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 189 (638)
...+......+.+.|++++|+..|+..++..... +.. .|+....++.+.|++++|+..|++..+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3466777888999999999999999998853221 232 8999999999999999999999999876
Q ss_pred ---CCCCCHHHH----HHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 190 ---KCKPTANTY----NSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 190 ---~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+. +...| .....++...|++++|+..|++..+..
T Consensus 91 ~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 91 GELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp CCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 433 66788 999999999999999999999997753
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.86 E-value=3.9e-05 Score=74.35 Aligned_cols=149 Identities=9% Similarity=-0.049 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..|..+...+.+.|++++|...|+..++. .|+.. .+...|+.+++...+. ...|+.+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 45667777777888888888888877663 23322 1222333333332221 13677788888
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHH
Q 006614 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI-YFKLGEVEK 284 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~ 284 (638)
.+.|++++|+..|++.++..+ .+...|..+..++...|++++|+..|++..+.. +.+...+..+... ....+..++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEE--KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887664 567788888888888888888888888877642 1244455555554 334556777
Q ss_pred HHHHHHHHHhCC
Q 006614 285 ALGLVQEMKGKG 296 (638)
Q Consensus 285 A~~~~~~m~~~~ 296 (638)
+.+.|..|....
T Consensus 318 a~~~~~~~l~~~ 329 (338)
T 2if4_A 318 QKEMYKGIFKGK 329 (338)
T ss_dssp ------------
T ss_pred HHHHHHHhhCCC
Confidence 778888877653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.83 E-value=4.4e-05 Score=73.98 Aligned_cols=148 Identities=12% Similarity=0.003 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
.+......+.+.|++++|...|.+.... .|+... +...|+.+++...+. ...|..+..++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 4555666677777777777777776654 222221 122333333332211 13788899999
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHH
Q 006614 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKG-LGRAGRVEDA 320 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A 320 (638)
.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|+..|++..+..+. +...+..+... ....+..+++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998863 347889999999999999999999999999876543 45555555554 3455677888
Q ss_pred HHHHHHHHHcC
Q 006614 321 YGLFMNMLKEG 331 (638)
Q Consensus 321 ~~~~~~~~~~~ 331 (638)
...|..|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88999888753
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00065 Score=55.67 Aligned_cols=82 Identities=11% Similarity=-0.051 Sum_probs=33.3
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 006614 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK----LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR----A 314 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~ 314 (638)
..+.+++|.+.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .
T Consensus 37 ~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~ 110 (138)
T 1klx_A 37 SQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVV 110 (138)
T ss_dssp TTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred cCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCC
Confidence 3333444444444444432 33344444444443 344444444444444332 23333333333333 3
Q ss_pred CCHHHHHHHHHHHHHc
Q 006614 315 GRVEDAYGLFMNMLKE 330 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~ 330 (638)
++.++|..+|++..+.
T Consensus 111 ~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 111 KNEKQAVKTFEKACRL 126 (138)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHC
Confidence 4444444444444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00012 Score=74.08 Aligned_cols=125 Identities=8% Similarity=-0.010 Sum_probs=72.3
Q ss_pred HcCCCHHHHHHHHHHhhhC-----CCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-----CCCCCCH-HHHHHH
Q 006614 171 GKAKMVNKALSIFYQIKSR-----KCK--PTANTYNSMILMLMQEGYYEKIHELYNEMCNE-----GNCFPDT-VTYSAL 237 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~-----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~-~~~~~l 237 (638)
..+|++++|+.++++..+. |.. ....+++.+..+|...|++++|..++++.+.. |+..|++ .+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3556666666666555332 111 12345666666777777777776666665432 3333443 456667
Q ss_pred HHHHHccCChHHHHHHHHHHHHC-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006614 238 ISAFGKLGRDISAIRLFDEMKEN-----GL-QP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~-----g~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
...|...|++++|..++++..+. |. .| ...+.+.+...+...+.+++|+.++..+.+.
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766665431 21 12 2334555666666777777777777777653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00025 Score=71.69 Aligned_cols=127 Identities=11% Similarity=0.023 Sum_probs=98.6
Q ss_pred HHHhcCCHhHHHHHHHHHHhC-----CCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHC-----C-CCC-CHHHHH
Q 006614 204 MLMQEGYYEKIHELYNEMCNE-----GNCFPD-TVTYSALISAFGKLGRDISAIRLFDEMKEN-----G-LQP-TAKIYT 270 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~-----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~~-~~~~~~ 270 (638)
.+..+|++++|+.++++.+.. |+..|+ ..+++.|...|...|++++|..++++..+. | -.| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999987643 333344 357899999999999999999999987642 2 123 355789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 271 TLVSIYFKLGEVEKALGLVQEMKG-----KGCA-LT-VYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~~-----~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
.|...|...|++++|+.++++..+ .|.. |+ ..+.+.+..++...+.+++|..+|..+.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988764 2432 22 344566777888999999999999999874
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0013 Score=53.82 Aligned_cols=17 Identities=6% Similarity=-0.040 Sum_probs=7.3
Q ss_pred cCCHHHHHHHHHHHHhC
Q 006614 595 AGMFEEAARLMKDMNAK 611 (638)
Q Consensus 595 ~g~~~~A~~~~~~m~~~ 611 (638)
.+++++|.+++++..+.
T Consensus 110 ~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 110 VKNEKQAVKTFEKACRL 126 (138)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHC
Confidence 34444444444444433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.65 E-value=7.2e-05 Score=58.59 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+..+...+.+.|++++|+..|++..+..+ .+...+..+..++.+.|++++|++.|++.....
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 344444455555555555555555544322 244455555555555555555555555555543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00025 Score=55.97 Aligned_cols=78 Identities=6% Similarity=-0.009 Sum_probs=40.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006614 144 MWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
|+..++..++.. +.++..+..+...+...|++++|+..|++..+..+ .+...|..+..+|...|++++|...|++...
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444432 33445555555555555555555555555554422 2445555555555555555555555555544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0007 Score=50.44 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
+..+...+.+.|++++|...|++..+... .+...+..+...+.+.|++++|+..|++....
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 33333444444444444444444433321 13334444444444444444444444444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0002 Score=59.17 Aligned_cols=83 Identities=7% Similarity=-0.004 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH----------hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006614 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY----------EKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
+.+++|...+++..+..+. +...|+.+..++.+.+++ ++|+..|++.++..+ .+...|..+..+|..
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP--~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHH
Confidence 3445555555555444322 555555555555554443 366666666666554 345555556666555
Q ss_pred cC-----------ChHHHHHHHHHHHH
Q 006614 244 LG-----------RDISAIRLFDEMKE 259 (638)
Q Consensus 244 ~g-----------~~~~A~~~~~~m~~ 259 (638)
.| ++++|++.|++..+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH
Confidence 43 55666666666555
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00023 Score=54.57 Aligned_cols=64 Identities=13% Similarity=0.115 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006614 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
++..+..+...+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444455555555555555555555555444222 344555555555555555555555555443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00069 Score=53.37 Aligned_cols=79 Identities=5% Similarity=-0.047 Sum_probs=50.9
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 006614 178 KALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEM 257 (638)
Q Consensus 178 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 257 (638)
+|+..|++..+..+ .+...+..+...|...|++++|+..|++.....+ .+...|..+...+...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35556666655532 2566666777777777777777777777766554 45566666666666677777777666666
Q ss_pred HH
Q 006614 258 KE 259 (638)
Q Consensus 258 ~~ 259 (638)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00098 Score=49.59 Aligned_cols=82 Identities=18% Similarity=0.194 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006614 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
+...+..+...+...|++++|+..|++..+..+ .+...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 345566677777777777777777777776554 456666677777777777777777777766642 22445555555
Q ss_pred HHHHh
Q 006614 274 SIYFK 278 (638)
Q Consensus 274 ~~~~~ 278 (638)
..+.+
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 54443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0011 Score=51.64 Aligned_cols=64 Identities=9% Similarity=0.056 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 511 DVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
+...+..+...+...|++++|++.|++.++.. +.+...+..+..++.+.|++++|+..+++..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34455566666666666666666666666542 22455666666666666666666666666664
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00034 Score=57.70 Aligned_cols=99 Identities=11% Similarity=0.168 Sum_probs=69.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC----------HHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 136 DETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKM----------VNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
.+.+++++|.+.++..++.. +.++..|+.+..++.+.++ +++|+..|++..+..+. +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 34455667777777666643 4566666666666666654 45888888888887544 777888888888
Q ss_pred HhcC-----------CHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006614 206 MQEG-----------YYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 206 ~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
...| ++++|++.|++.++.. |+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~---P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ---PDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhC---CCCHHHHHHHH
Confidence 8764 8999999999999876 55555544333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.002 Score=49.09 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
+...+..+...|.+.|++++|+..|++..+..+ .+...|..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP--DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777777777778888888888887777664 4556677777777777777777777777654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.025 Score=42.08 Aligned_cols=68 Identities=4% Similarity=-0.042 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHcCCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 157 VMGPSVLSEIVNILGKAKM---VNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+.++..+..+..++...++ .++|..++++..+..+. ++.+...+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3445555555555543332 45666666665555322 55555555566666666666666666666554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.018 Score=54.86 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 265 TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|...|++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44455554444444455555555555555543 34444545555555555555555555555554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.011 Score=58.66 Aligned_cols=85 Identities=7% Similarity=-0.090 Sum_probs=46.0
Q ss_pred CChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhh-----CC-CCCC-HHHHHHHHHH
Q 006614 526 GMIDDAYSLLRRMEED---GCVPD----INSHNIILNGLAKSGGPKRAMEIFTKMQH-----SE-IKPD-AVSYNTILGC 591 (638)
Q Consensus 526 g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~-~~~~~~l~~~ 591 (638)
|++++|+.++++.++. -+.|+ ..+++.+...|...|++++|..++++... .| -.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555554431 11122 34455566666666666666666666543 11 1222 3456667777
Q ss_pred HHccCCHHHHHHHHHHHHh
Q 006614 592 LSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 592 ~~~~g~~~~A~~~~~~m~~ 610 (638)
|...|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777777666543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.11 Score=49.51 Aligned_cols=75 Identities=13% Similarity=0.038 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 006614 299 LTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTV 377 (638)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 377 (638)
.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|++....+ |...+|...
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~~~~ 349 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTLYWI 349 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChHHHH
Confidence 467777777666666788888888888887765 677777777777778888888888888777644 555555433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.012 Score=58.48 Aligned_cols=61 Identities=13% Similarity=0.028 Sum_probs=28.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 233 TYSALISAFGKLGRDISAIRLFDEMKEN-----G-LQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMK 293 (638)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 293 (638)
+++.+...|...|++++|+.++++..+. | ..| ...+++.|...|...|++++|+.++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444444444445555554444444321 1 111 12345555555555555555555555544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0054 Score=60.89 Aligned_cols=86 Identities=7% Similarity=-0.035 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHhhhC-----CCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCCCCCCH-HHHHHHHHH
Q 006614 174 KMVNKALSIFYQIKSR-----KCK--PTANTYNSMILMLMQEGYYEKIHELYNEMCN-----EGNCFPDT-VTYSALISA 240 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~-----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~-~~~~~l~~~ 240 (638)
|++++|+.++++..+. |.. ....+++.+..+|...|++++|..++++.+. .|+..|++ .+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4666666666665431 211 1234567777777777777777777777653 24433444 457777777
Q ss_pred HHccCChHHHHHHHHHHHH
Q 006614 241 FGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~ 259 (638)
|...|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777777776654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.008 Score=59.74 Aligned_cols=90 Identities=11% Similarity=-0.045 Sum_probs=62.5
Q ss_pred HHcCCCHHHHHHHHHHhhhC-----CC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-----CCCCCCH-HHHHH
Q 006614 170 LGKAKMVNKALSIFYQIKSR-----KC--KPTANTYNSMILMLMQEGYYEKIHELYNEMCNE-----GNCFPDT-VTYSA 236 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~-~~~~~ 236 (638)
+.+.|++++|+.++++..+. |. .....+++.+..+|...|++++|+.++++++.. |+..|++ .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34567888888888777643 11 112456777888888888888888888876532 4433544 46778
Q ss_pred HHHHHHccCChHHHHHHHHHHHH
Q 006614 237 LISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
|...|...|++++|+.++++..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888888888888888887654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.019 Score=43.25 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=37.2
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 167 VNILGKAKMVNKALSIFYQIKSRKCKPTAN-TYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
...+.+.|++++|...|++..+..+. +.. .+..+..+|...|++++|++.|++..+..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34555666666666666666655322 455 666666667777777777777777666554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.13 Score=46.88 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCH
Q 006614 247 DISAIRLFDEMKENGLQPT---AKIYTTLVSIYFKL-----GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA-GRV 317 (638)
Q Consensus 247 ~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~ 317 (638)
...|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++.++.++.-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 35666777777764 455 55777777778773 78888888888888775543466666777777774 788
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHH
Q 006614 318 EDAYGLFMNMLKEGCK--PDIVLINN 341 (638)
Q Consensus 318 ~~A~~~~~~~~~~~~~--p~~~~~~~ 341 (638)
+++.+.+++.+...+. |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888888877655 65544443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.01 Score=44.76 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=41.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTV-TYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
....+.+.|++++|++.|+++.+..+ .+.. .+..+...+...|++++|++.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP--VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS--STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44566677788888888887777654 4556 6777777777777777777777777765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.2 Score=54.74 Aligned_cols=75 Identities=12% Similarity=0.072 Sum_probs=38.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006614 235 SALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA 314 (638)
Q Consensus 235 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 314 (638)
..++..+.+.|..++|+++.+.-. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 455555555566555555442111 1122334456666665554322 1455566666666666
Q ss_pred CCHHHHHHHHHHH
Q 006614 315 GRVEDAYGLFMNM 327 (638)
Q Consensus 315 g~~~~A~~~~~~~ 327 (638)
|+++.|.+.|.++
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 6666666666554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.58 Score=42.66 Aligned_cols=94 Identities=16% Similarity=0.068 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc-CCH
Q 006614 528 IDDAYSLLRRMEEDGCVPD---INSHNIILNGLAKS-----GGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRA-GMF 598 (638)
Q Consensus 528 ~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g~~ 598 (638)
...|...+++.++. .|+ ...|..+...|.+. |+.++|.++|++..+.+-.-+..++..+.+.+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777774 455 45677788777774 88888888888888642111356666777777774 888
Q ss_pred HHHHHHHHHHHhCCCC--CCHHhHHHH
Q 006614 599 EEAARLMKDMNAKGFE--YDQITYSSI 623 (638)
Q Consensus 599 ~~A~~~~~~m~~~~~~--p~~~~~~~l 623 (638)
++|.+.+++....+.. |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 8888888888876555 665544443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.082 Score=57.83 Aligned_cols=27 Identities=7% Similarity=-0.020 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 477 ARVYAVMIKHFGKCGRLSDAVDLFNEM 503 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m 503 (638)
...|..+...+.+.|+++.|.+.|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 444555555555555555555555544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.042 Score=44.71 Aligned_cols=83 Identities=12% Similarity=0.045 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 006614 143 VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK---MVNKALSIFYQIKSRK-CKPTANTYNSMILMLMQEGYYEKIHELY 218 (638)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 218 (638)
.+.+.|.+....+ +++..+...+..++.+.+ ++++++.+++.+.+.. +..+...+-.+..++.+.|++++|.+.+
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4445555554544 467777777777777776 5567777877777653 1113555566777778888888888888
Q ss_pred HHHHhCCC
Q 006614 219 NEMCNEGN 226 (638)
Q Consensus 219 ~~~~~~~~ 226 (638)
+.+++..|
T Consensus 95 ~~lL~ieP 102 (152)
T 1pc2_A 95 RGLLQTEP 102 (152)
T ss_dssp HHHHHHCT
T ss_pred HHHHhcCC
Confidence 88877654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.36 Score=37.78 Aligned_cols=67 Identities=22% Similarity=0.154 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006614 546 DINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 546 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 613 (638)
+...++..+..+...|+-++-.+++..+.. +..|++...-.+..+|.+.|+..+|.+++++.-++|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 444555566677777777777777777543 3456777777777777777777777777777777765
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.065 Score=40.87 Aligned_cols=66 Identities=9% Similarity=-0.028 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCC------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRK------CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
...+..+...+.+.|+++.|...|++..+.. -.+....+..+..++.+.|++++|+..++++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3344445555555555555555555543320 11234455555555555555555555555555543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.63 Score=38.87 Aligned_cols=98 Identities=7% Similarity=0.064 Sum_probs=50.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHH
Q 006614 417 FCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDA 496 (638)
Q Consensus 417 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 496 (638)
..+.|+++.|.++.+++ .+...|..|.+.....|+++-|.+.|..... +..+.-.|...|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34556666666665544 2455666666666666666666666655443 23333344445555444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 006614 497 VDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLL 535 (638)
Q Consensus 497 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (638)
..+-+.....| -++.....+...|+++++.++|
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 44433333322 1333344444555555555555
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.12 Score=42.04 Aligned_cols=82 Identities=21% Similarity=0.099 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHH
Q 006614 282 VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG---RVEDAYGLFMNMLKEGCKP--DIVLINNLINVLGRAGRLEDAL 356 (638)
Q Consensus 282 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 356 (638)
...+.+-|.+..+.|. ++..+...+.-++++.+ ++++++.++++..+.. .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555544 46666666666777766 5557777777777654 12 2444555666677777777777
Q ss_pred HHHHHHHHC
Q 006614 357 KLFNKMEAL 365 (638)
Q Consensus 357 ~~~~~~~~~ 365 (638)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777777763
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.08 Score=39.31 Aligned_cols=65 Identities=12% Similarity=-0.025 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhcCC---HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 194 TANTYNSMILMLMQEGY---YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
++..+..+..++...++ .++|..++++.++..+ .++.....+...+.+.|++++|+..|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp--~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP--YNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555555555543333 4566666666666554 45555555555566666666666666665554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.52 Score=39.40 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=22.6
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006614 171 GKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEM 221 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 221 (638)
.+.|+++.|.++.+++ .+...|..+.....+.|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554443 14445555555555555555555555443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.27 Score=37.30 Aligned_cols=61 Identities=11% Similarity=-0.016 Sum_probs=25.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcC------CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 445 YCSLINGYGKAKRYEAANELFLELKEYC------GCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKK 505 (638)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (638)
+..+...+.+.|+++.|...|+.+.+.. ......++..+..++.+.|+++.|...+++..+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344444444444444444444433320 112233444444444444444444444444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.37 Score=38.70 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHhcCCH------hHHHHHHHHHHhCCCCCCCHH-HHHHHHHH------HHccCChHHHHHHHHHHHHC
Q 006614 194 TANTYNSMILMLMQEGYY------EKIHELYNEMCNEGNCFPDTV-TYSALISA------FGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~m~~~ 260 (638)
|..+|-..+..+-+.|++ ++.+++|++....-+ |+.. .|...+.. +...++.++|.++|+.+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~P--p~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALP--PDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSC--GGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCC--ccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 677777777777777777 777788887776544 4321 11111111 11236777777777777654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006614 261 GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL 299 (638)
Q Consensus 261 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 299 (638)
+-.- ...|......-.+.|++.+|.+++......++.|
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3222 6666666666667777777777777777766553
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.70 E-value=0.43 Score=38.32 Aligned_cols=103 Identities=14% Similarity=0.153 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCCHH-HHHHHHHH------HHcCCCHHHHHHHHHHhhh
Q 006614 122 EHNSTTYMALIRCLDETRMI------GVMWKSIQDMVRSTCVMGPS-VLSEIVNI------LGKAKMVNKALSIFYQIKS 188 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~~ 188 (638)
+.|..+|-..+..+-+.|++ ++..++|++.... .+|+.. .+...+.. +...+++++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45778888888888888888 7888888887764 455421 11111111 1223567777777777654
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 189 RKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 189 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
.+ +-=...|......-.++|++.+|.+++......++
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 42 22255666666666667777777777777666554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.67 E-value=5.3e-06 Score=79.97 Aligned_cols=243 Identities=10% Similarity=0.054 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
+.+|..+.++..+.++..+|++.|- ..-|+..|..++.+..+.|.+++-...+.-..+..- ++..=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI------kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI------KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC------CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH------hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 3466666666666666666655432 233555666666776777777766665555444322 23333456666
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC--------------------CCC
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG--------------------LQP 264 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--------------------~~~ 264 (638)
|++.++..+-.+++ . .||+.-...+.+-|...|.++.|.-+|..+.... -.-
T Consensus 126 yAk~~rL~elEefl----~----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 126 LAKTNRLAELEEFI----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHTSCSSSTTTSTT----S----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHhhCcHHHHHHHH----c----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77666655432221 1 1555555566666666666665555554332110 012
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006614 265 TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLIN 344 (638)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 344 (638)
++.||..+-.+|...+.+.-|.-.--.++-.. .....++..|-..|.+++-+.+++.-... -......|+.|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence 56677777777777776665554443333221 11223556677777777777777766632 2345667777777
Q ss_pred HHHccCCHHHHHHHHHHHHHC-CCC------CChhhHHHHHHHHHhcCChHHH
Q 006614 345 VLGRAGRLEDALKLFNKMEAL-QCK------PNVVTYNTVIKSLFESKAPASE 390 (638)
Q Consensus 345 ~~~~~g~~~~A~~~~~~~~~~-~~~------p~~~~~~~ll~~~~~~~~~~~~ 390 (638)
.|++-. +++..+-++..-++ +++ -....|..++-.|..-...+.+
T Consensus 272 LYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 272 LYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp HHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred HHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 777653 34433333332221 111 1233455555555555555544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.53 E-value=0.33 Score=37.92 Aligned_cols=83 Identities=11% Similarity=0.047 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHhhhCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHH
Q 006614 143 VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNK---ALSIFYQIKSRKCK-PTANTYNSMILMLMQEGYYEKIHELY 218 (638)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 218 (638)
.+.+.|......| .++..+-..+..++.+..+... ++.+++.+...+.+ ......-.+..++.+.|++++|.+.+
T Consensus 19 ~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 19 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3444444444433 3666666666677777665554 77777777665311 13334445667777777777777777
Q ss_pred HHHHhCCC
Q 006614 219 NEMCNEGN 226 (638)
Q Consensus 219 ~~~~~~~~ 226 (638)
+.+++..|
T Consensus 98 ~~lL~~eP 105 (126)
T 1nzn_A 98 RGLLQTEP 105 (126)
T ss_dssp HHHHHHCT
T ss_pred HHHHHhCC
Confidence 77777654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.39 E-value=1.4 Score=34.51 Aligned_cols=68 Identities=18% Similarity=0.116 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 006614 300 TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCK 368 (638)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 368 (638)
+.......++.+..+|+-+.-.+++.++... .+|+....-.+..+|.+.|+..+|.+++.++-+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4455566667777777777777777775442 3556777777777777777777777777777666643
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.56 E-value=0.64 Score=36.29 Aligned_cols=82 Identities=18% Similarity=0.165 Sum_probs=42.0
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 006614 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDIS---AIRLFDEMKENGLQP--TAKIYTTLVSIYFKLGEVEKA 285 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A 285 (638)
...+.+-|.+....+. ++..+-..+..++++..+... ++.+++++.+.+ .| .......|.-++.+.|++++|
T Consensus 17 l~~~~~~y~~e~~~~~--~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSC--CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3344444444444333 455555555555555554433 555555555542 12 233344455566666666666
Q ss_pred HHHHHHHHhC
Q 006614 286 LGLVQEMKGK 295 (638)
Q Consensus 286 ~~~~~~m~~~ 295 (638)
.+.++.+++.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.29 E-value=1 Score=33.06 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 006614 562 GPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 562 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
|.=+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-.+.+ +.+...+|..+++-+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 44466777777777788889988888889999999999999988888765 344455688777654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=92.98 E-value=5.9 Score=37.00 Aligned_cols=167 Identities=13% Similarity=0.102 Sum_probs=91.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHhCCCCCCHHHHHHHH
Q 006614 233 TYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLV----QEMKGKGCALTVYTYTELI 308 (638)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~~~~~~~~li 308 (638)
+|.++..-|.+.+++++|++++-.-.. .+.+.|+..-|-++. +-..+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344555556777777777776644322 244455554444333 4444456666666666666
Q ss_pred HHHHhcCCHH-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006614 309 KGLGRAGRVE-DAYGLFMNMLK----EG--CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSL 381 (638)
Q Consensus 309 ~~~~~~g~~~-~A~~~~~~~~~----~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 381 (638)
..+.....-+ +=..+.+++++ .| ..-|......+...|.+.+++.+|..-|- .|..++...+..++..+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 6655544311 11223333332 12 34467777888889999999998887773 13333345665555454
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 382 FESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEME 434 (638)
Q Consensus 382 ~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 434 (638)
...+...+. +.+.-. .+-.|...++...|..+++...
T Consensus 178 ~~~~~~~e~---------------dlfiaR-aVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 178 YKQDESHTA---------------PLYCAR-AVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTSCGGGH---------------HHHHHH-HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCccH---------------HHHHHH-HHHHHHHhCCHHHHHHHHHHHH
Confidence 444432222 222222 2334666778888887766554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.19 E-value=8.1e-05 Score=71.95 Aligned_cols=404 Identities=14% Similarity=0.101 Sum_probs=225.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
|+..|..++.+..+.|.+++.++.++...+. ..++.+=+.++-+|++.++..+-.+++ -.||..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHH
Confidence 4456777888888888888888777655442 444555567777888887755433321 1355555666777
Q ss_pred HHHhcCCHhHHHHHHHHHHhC-------------------CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 006614 204 MLMQEGYYEKIHELYNEMCNE-------------------GNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP 264 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 264 (638)
-|...|.++.|.-+|..+..- .....++.||.-+-.+|...+.+.-|.-.--.++-
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv----- 227 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----- 227 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----
Confidence 777777777777666554221 11124667888888889888888776555444432
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC------CHH
Q 006614 265 TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE-GCKP------DIV 337 (638)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p------~~~ 337 (638)
...-...++..|-..|.+++-+.+++.-.... ......|+-|.-.|++- +.++-.+.++....+ +++. ...
T Consensus 228 hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ah 305 (624)
T 3lvg_A 228 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 305 (624)
T ss_dssp CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTT
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 12223456777889999999999998877432 23678888888888776 445444444433332 2211 223
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHH-H---HC-------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCC
Q 006614 338 LINNLINVLGRAGRLEDALKLFNKM-E---AL-------QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPS 406 (638)
Q Consensus 338 ~~~~li~~~~~~g~~~~A~~~~~~~-~---~~-------~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 406 (638)
.|..++-.|++-.++|.|....-.- . +. .-..|...|...|..|....-.. ...++..+..+ +.+
T Consensus 306 LW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~l--L~DLL~vL~pr-lDh- 381 (624)
T 3lvg_A 306 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLL--LNDLLMVLSPR-LDH- 381 (624)
T ss_dssp CHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTT--SHHHHHHHCTT-CCS-
T ss_pred hHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHH--HHHHHHhcccc-CCh-
Confidence 5667777777777777665322110 0 00 01134455555555544433211 12222222111 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH------------HHHHHcCCC
Q 006614 407 PFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELF------------LELKEYCGC 474 (638)
Q Consensus 407 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~------------~~~~~~~~~ 474 (638)
..+++.+.+.|++......+..... ..+...-.++-+.|....+++.-.... .++.+.
T Consensus 382 ----~RvV~~~~k~~~LpLIkpYL~~Vq~---~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH--- 451 (624)
T 3lvg_A 382 ----TRAVNYFSKVKQLPLVKPYLRSVQN---HNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH--- 451 (624)
T ss_dssp ----TTTHHHHHTTTCGGGGTGGGTSCCC---SCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---
T ss_pred ----HHHHHHHHhcCCchhhHHHHHHHHH---hhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---
Confidence 1234444555555444433333222 234444455556666666655433221 222221
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006614 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 554 (638)
.-...-..-...|.+.++|++++.+.++ .+ .|.-.|......|+.+-|.++++-.++.| +...|...+
T Consensus 452 eL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dk------lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~L 519 (624)
T 3lvg_A 452 ELIEFRRIAAYLFKGNNRWKQSVELCKK---DS------LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACL 519 (624)
T ss_dssp SSHHHHHHHHHHHHTTCHHHHHSSCSST---TC------CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHH
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHh---cc------cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHH
Confidence 1223334445567778888777765432 11 12223445566788888888888888765 455666666
Q ss_pred HHHHhcCChHHHHHH
Q 006614 555 NGLAKSGGPKRAMEI 569 (638)
Q Consensus 555 ~~~~~~g~~~~A~~~ 569 (638)
-.|...=+++-++++
T Consensus 520 ytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 520 FTCYDLLRPDVVLET 534 (624)
T ss_dssp HHTSSSSSCHHHHHH
T ss_pred HHHhhccChHHHHHH
Confidence 666666666666555
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=91.67 E-value=1.8 Score=33.77 Aligned_cols=64 Identities=13% Similarity=0.199 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 006614 563 PKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 563 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
.=+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-.+.+ +.+...+|..+++-+
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 3456667777777788999999999999999999999999999988875 455566788887754
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.53 E-value=4.2 Score=46.05 Aligned_cols=130 Identities=12% Similarity=0.085 Sum_probs=58.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006614 233 TYSALISAFGKLGRDISAIRLFDEMKENGLQPTA----KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELI 308 (638)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 308 (638)
-|..++..+-+.|.++.+.++-....+..-+.+. ..|..+...+...|++++|...+-.+..... -......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 3445555555555555555554444432111111 1344555555555555555555555544322 233444444
Q ss_pred HHHHhcCC------------HHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHH
Q 006614 309 KGLGRAGR------------VEDAYGLFMNMLKE--GCKPDIVLINNLINVLGRAGRLEDAL-KLFNKMEA 364 (638)
Q Consensus 309 ~~~~~~g~------------~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~ 364 (638)
..+|..|. .++..+++..-.+. .+.....-|..|-..+..+|++..|. -+|+.+.+
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 44444433 33344444332221 11111234555555566667766544 45555443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.45 E-value=12 Score=37.06 Aligned_cols=58 Identities=16% Similarity=0.056 Sum_probs=26.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 446 CSLINGYGKAKRYEAANELFLELKEYCGCSS-----ARVYAVMIKHFGKCGRLSDAVDLFNEM 503 (638)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 503 (638)
..|...+...|++.+|.+++..+.......+ ...+...+..|...+++..|..++.++
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555555555555555555543211111 223444444455555555555555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.15 E-value=13 Score=36.85 Aligned_cols=172 Identities=12% Similarity=0.078 Sum_probs=86.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----ccCCHHHH--HHHHHHHHH---cCC
Q 006614 403 VLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYG----KAKRYEAA--NELFLELKE---YCG 473 (638)
Q Consensus 403 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A--~~~~~~~~~---~~~ 473 (638)
..........++..|...|+++...+.+.-+.... .........+++.+. .....+.. ..+.+.... ..+
T Consensus 52 ~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~ki 130 (445)
T 4b4t_P 52 LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-GQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKI 130 (445)
T ss_dssp TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT-TTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCC
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccch
Confidence 34455666777777788888887777666555432 112233334443332 12221111 111111100 011
Q ss_pred CC---cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH----C
Q 006614 474 CS---SARVYAVMIKHFGKCGRLSDAVDLFNEMKKL--RCKPD---VYTYNALMSGMVRAGMIDDAYSLLRRMEE----D 541 (638)
Q Consensus 474 ~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~ 541 (638)
.. .......|...|...|++.+|..++..+... |.... ...+...+..|...+++.+|..+++++.. .
T Consensus 131 flE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~ 210 (445)
T 4b4t_P 131 FVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN 210 (445)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc
Confidence 11 1233455666677777777777777766432 21111 23445555666677777777777766532 1
Q ss_pred CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 542 GCVPD--INSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 542 ~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
...|+ ...+...+..+...+++.+|.+.|.++..
T Consensus 211 ~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 211 PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 11222 23345555666666777777666666554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.77 E-value=21 Score=38.70 Aligned_cols=274 Identities=13% Similarity=0.038 Sum_probs=146.7
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHH-HHhCC-CC-----CCHHHHHHHHH
Q 006614 345 VLGRAGRLEDALKLFNKMEALQCKPNV--VTYNTVIKSLFESKAPASEASAWFEK-MKANG-VL-----PSPFTYSILID 415 (638)
Q Consensus 345 ~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~~~~~~~~~-m~~~~-~~-----~~~~~~~~li~ 415 (638)
+....|+.++++.+++.....+...+. ..-..+--++...|...++ ..++.. +.... +. +....-.++.-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~-~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDT-TDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHH-HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 456677777787777765432101122 2222233344555555444 444443 33221 00 11122233333
Q ss_pred HHHhcCC-HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCC
Q 006614 416 GFCKTNR-VEKAHLLLEEMEEKGFPPCP--AAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGR 492 (638)
Q Consensus 416 ~~~~~g~-~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 492 (638)
++...|. -+++.+.+..+.... .... .+-..+...+.-.|+-+....++..+.+. ...+..-...+.-++...|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~-~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET-QHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHhhhCCC
Confidence 3433332 246666676666543 1111 12223444456778888888888877663 22222333344445557889
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 006614 493 LSDAVDLFNEMKKLRCKPDV-YTYN---ALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAME 568 (638)
Q Consensus 493 ~~~A~~~~~~m~~~~~~p~~-~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 568 (638)
.+.+..+.+.+... .+. .-|. ++.-+|+..|+......++..+.+.. ..+......+.-++...|+.+.+.+
T Consensus 540 ~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 540 QELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 99888888888764 232 2233 33445677888877777999888752 2233333334445556777777788
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhCCCCCCHHhHHHHHHHHhc
Q 006614 569 IFTKMQHSEIKPDAVSYNTILGCLSRAGMF-EEAARLMKDMNAKGFEYDQITYSSILEAVGK 629 (638)
Q Consensus 569 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 629 (638)
+++.+.+.+ .|....-..+.-+....|+. .+|..++..+.. .+|..+-..-+-+++.
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSM 673 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHH
Confidence 887776643 34444444454555555554 577888888863 4455544444444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.42 E-value=1.2 Score=43.35 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHH
Q 006614 198 YNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE-----NGLQPTAKI 268 (638)
Q Consensus 198 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~ 268 (638)
...++..+...|++++|+..+..+....+ -+...+..+|.++.+.|+..+|++.|+...+ .|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P--~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34466677778888888888877777665 5777788888888888888888887776643 366666544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.29 E-value=1.2 Score=36.57 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
++..+.+++...|+|.+|...|++.+
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34445566666666666666666643
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.80 E-value=3.3 Score=32.45 Aligned_cols=69 Identities=9% Similarity=-0.027 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHcCCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 157 VMGPSVLSEIVNILGKAKM---VNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.|++.+-.....++.+..+ ..+++.+++.+.+.+.......+-.+..++.+.|++++|.+..+.+++..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4555555555555555443 23455566665554322234444555566666666666666666666654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.56 E-value=2.8 Score=44.36 Aligned_cols=52 Identities=13% Similarity=0.058 Sum_probs=34.9
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 006614 521 GMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKM 573 (638)
Q Consensus 521 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 573 (638)
.|...|+++-|+++-++.+..- +-+..+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3456677777777777776642 224667777777777777777777777665
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.45 E-value=12 Score=42.39 Aligned_cols=168 Identities=15% Similarity=0.085 Sum_probs=101.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC
Q 006614 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG 245 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 245 (638)
++..+.+.+.++-|.++..... .++...-.+..++...|++++|.+.|.+... +.. .+... ..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~-~~~~l----------~~ 880 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLY-SHTSQ----------FA 880 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCT-TCCCS----------CS
T ss_pred HHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhc-ccchh----------hh
Confidence 4444555566655555443332 2444444566777778888888888876532 110 11000 00
Q ss_pred ChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHH
Q 006614 246 RDISAIRLFDEMKENG--LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV----YTYTELIKGLGRAGRVED 319 (638)
Q Consensus 246 ~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~ 319 (638)
.... +..+.... ...-..-|..++..+.+.+.++.+.++-....+....-+. ..|..+.+.+...|++++
T Consensus 881 ~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 881 VLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred hhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 0000 11122211 1123345778888999999999999888777654322222 257888999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 006614 320 AYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDAL 356 (638)
Q Consensus 320 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 356 (638)
|...+-.+..... -......|+...|..|..+.-.
T Consensus 957 Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 957 AHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp GGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhh
Confidence 9999988876543 3556777888888887765543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.15 E-value=14 Score=34.24 Aligned_cols=167 Identities=13% Similarity=0.079 Sum_probs=89.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHhCCCCCCHHHHHHHH
Q 006614 233 TYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGL----VQEMKGKGCALTVYTYTELI 308 (638)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~~~~~~~~~li 308 (638)
.|.++..-|.+.+++++|++++..-.. .+.+.|+...|-++ ++...+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344555556677777777777654322 24445555444443 44444556666766666666
Q ss_pred HHHHhcCCHH-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006614 309 KGLGRAGRVE-DAYGLFMNMLK----EG--CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSL 381 (638)
Q Consensus 309 ~~~~~~g~~~-~A~~~~~~~~~----~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 381 (638)
..+.....-+ +=.++.+.+++ .| ..-|......+...|.+.|++.+|..-|-. +..-+...+..++-.+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHH
Confidence 6655432211 12333444433 11 234677888888899999999888876642 1111344454444444
Q ss_pred Hhc---CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 382 FES---KAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEME 434 (638)
Q Consensus 382 ~~~---~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 434 (638)
... +...+. +.+. ...+-.|.-.|+...|..+++...
T Consensus 176 ~~~~~~~~~~e~---------------dlf~-~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 176 LCQVDDIEDSTV---------------AEFF-SRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTCCCHHHH---------------HHHH-HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHhcCCCCcchH---------------HHHH-HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333 222221 1111 122233556778888888877654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.13 E-value=1.8 Score=31.87 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 141 IGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
.-+..+-++.+...+..|++.+..+.++++-+-+++..|.++|+-++.+ +.....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 3467777888888888899999999999999999999999999888765 2233445666554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.08 E-value=7.4 Score=30.97 Aligned_cols=69 Identities=9% Similarity=-0.027 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHcCCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 157 VMGPSVLSEIVNILGKAKM---VNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+++.+-..+..++.+..+ ..+++.+++.+...+........-.+..++.+.|++++|.+..+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3444444444445544442 23455555555543322233333445556666666666666666666654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.83 E-value=14 Score=35.55 Aligned_cols=118 Identities=9% Similarity=0.041 Sum_probs=75.3
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHcCCCHHHH
Q 006614 105 INVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG-----PSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 105 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A 179 (638)
.+..+..++|+...+..-.....=.-++..|...|++.+|.+++..+.+.-...| ..++..-+..|...+++.++
T Consensus 79 ~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~ 158 (394)
T 3txn_A 79 VQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKA 158 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHH
Confidence 3566788899976542111111223678899999999999999988877522212 24566677788888999998
Q ss_pred HHHHHHhhhC--CCCCCHHHHH----HHHHHHH-hcCCHhHHHHHHHHHH
Q 006614 180 LSIFYQIKSR--KCKPTANTYN----SMILMLM-QEGYYEKIHELYNEMC 222 (638)
Q Consensus 180 ~~~~~~~~~~--~~~~~~~~~~----~l~~~~~-~~g~~~~A~~~~~~~~ 222 (638)
...+....+. .+.+++.... .-...++ ..++|.+|...|-+..
T Consensus 159 k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 159 RAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 8888777543 1112332221 2223455 6788888888777664
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.26 E-value=3.6 Score=32.28 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHhcCCh---HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 545 PDINSHNIILNGLAKSGGP---KRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 545 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
|+..+--.+..++.+..+. .+++.+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444444444444444432 2344455444432210112333334445555555555555555555
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.96 E-value=2.6 Score=44.62 Aligned_cols=86 Identities=15% Similarity=0.020 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------ChHHHHHHHHHhhhC---
Q 006614 509 KPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSG---------GPKRAMEIFTKMQHS--- 576 (638)
Q Consensus 509 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---------~~~~A~~~~~~m~~~--- 576 (638)
+.+..=|..|.....+.+.+++|.+.|+..+.. +-+...+..|+..|.+.+ +.+..+...-++..-
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~w~~R 687 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYDCR 687 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHHHhhh
Confidence 345556888888888888888888888888875 467888888888888776 666666666665421
Q ss_pred -CCCCCHHHHHHHHHHHHccC
Q 006614 577 -EIKPDAVSYNTILGCLSRAG 596 (638)
Q Consensus 577 -~~~p~~~~~~~l~~~~~~~g 596 (638)
-...+......+...+.+.|
T Consensus 688 wY~efs~~l~~~l~kLi~~~G 708 (754)
T 4gns_B 688 YYNYCQIFNLQLLEKLCNELG 708 (754)
T ss_dssp TTBCCCHHHHHHHHHHHHHHC
T ss_pred cccccCHHHHHHHHHHHHHhC
Confidence 11233444445555444444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.14 E-value=4.2 Score=39.50 Aligned_cols=55 Identities=4% Similarity=-0.029 Sum_probs=26.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006614 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEM 221 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 221 (638)
++..+...|++++|...+..+.... +.+...|..++.+|.+.|+..+|++.|+..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444555555554444444331 224445555555555555555555555443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.82 E-value=3.7 Score=32.08 Aligned_cols=60 Identities=17% Similarity=0.281 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 143 VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+..+-++.+...+..|++.+..+.++++-+-+++..|.++|+-++.+ +.+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 56677777778888899999999999999999999999999888765 2334455666654
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=83.13 E-value=11 Score=27.68 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=44.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 527 MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMK 606 (638)
Q Consensus 527 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 606 (638)
..++|..+-+-+...+. ....-.+-+..+...|++++|..+.+.+- .||...|.++. -.+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 34566665555555432 11222222345666777777776666553 56776666653 356677777766666
Q ss_pred HHHhCC
Q 006614 607 DMNAKG 612 (638)
Q Consensus 607 ~m~~~~ 612 (638)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.04 E-value=10 Score=27.70 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=45.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 527 MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMK 606 (638)
Q Consensus 527 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 606 (638)
..++|..+-+-+...+. ....-.+-+..+...|++++|..+.+.+- .||...|.++. -.+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 34566666665555432 22222223345667777777776665543 57777776653 456777777777776
Q ss_pred HHHhCC
Q 006614 607 DMNAKG 612 (638)
Q Consensus 607 ~m~~~~ 612 (638)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 666554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.46 E-value=11 Score=30.85 Aligned_cols=121 Identities=12% Similarity=0.052 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCC---H----HHHHHHHHHHHcCCCHHHHHHHHHHhhhC--CCCCCH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRST-CVMG---P----SVLSEIVNILGKAKMVNKALSIFYQIKSR--KCKPTA 195 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~---~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 195 (638)
.++-.-++.+...|.|+.|+-+..-++... ..++ + .++..+.+++...|++..|...|++..+. ...-+.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345566788889999999988877754431 1222 1 35677888899999999999999986432 111011
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
.++.++. . ...... .... ..+...--.+...+.+.|+.++|+.+++.+..+
T Consensus 101 s~~~~~~---~-~ss~p~---------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 101 KVRPSTG---N-SASTPQ---------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -----------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred Ccccccc---c-cCCCcc---------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1111110 0 000000 0011 134445555777788888888888888876543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=80.38 E-value=43 Score=32.24 Aligned_cols=92 Identities=12% Similarity=-0.039 Sum_probs=50.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCcHHHHH---
Q 006614 412 ILIDGFCKTNRVEKAHLLLEEMEEKGFPPC-----PAAYCSLINGYGKAKRYEAANELFLELKEY--CGCSSARVYA--- 481 (638)
Q Consensus 412 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~--- 481 (638)
.++..|...|++.+|.+++.++.+.--..| ...+..-++.|...+++.++...+...... .+.+++.+-.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 466777788888888777777765311111 224555566666777777777777665432 1212222211
Q ss_pred -HHHHHHH-ccCCHHHHHHHHHHH
Q 006614 482 -VMIKHFG-KCGRLSDAVDLFNEM 503 (638)
Q Consensus 482 -~li~~~~-~~g~~~~A~~~~~~m 503 (638)
.-...+. ..+++..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 1122234 566666666665544
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=80.24 E-value=33 Score=30.79 Aligned_cols=116 Identities=18% Similarity=0.168 Sum_probs=71.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCC
Q 006614 309 KGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQC--KPNVVTYNTVIKSLFESKA 386 (638)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~ 386 (638)
....+.|++++|+.....-++..+. |...-..++..+|-.|+++.|.+-++...+... .|....|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 4466788888888888888887655 777778888888888888888888888766441 1223344444443
Q ss_pred hHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhC
Q 006614 387 PASEASAWFEKMKANGVLP-----SPFTYSILIDGF--CKTNRVEKAHLLLEEMEEK 436 (638)
Q Consensus 387 ~~~~~~~~~~~m~~~~~~~-----~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~ 436 (638)
+..-..+-..+-.| ...-...++.+. ...|+.++|..+-.++.+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222233222222 122333444443 3458888888887777553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 638 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-09 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-07 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.2 bits (134), Expect = 5e-09
Identities = 43/306 (14%), Positives = 97/306 (31%), Gaps = 12/306 (3%)
Query: 68 RILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTT 127
+ K +A + + + + ++N
Sbjct: 75 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 134
Query: 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIK 187
Y + + +G + ++ +++ ++ L+I + K
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194
Query: 188 SRKCKPT-ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR 246
+ P + Y ++ +L + +++ Y + + L + + G
Sbjct: 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV--HGNLACVYYEQGL 252
Query: 247 DISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT 305
AI + E LQP Y L + + G V +A C +
Sbjct: 253 IDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLN 309
Query: 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI-NNLINVLGRAGRLEDALKLFNKMEA 364
L G +E+A L+ L+ P+ +NL +VL + G+L++AL + + A
Sbjct: 310 NLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKE--A 365
Query: 365 LQCKPN 370
++ P
Sbjct: 366 IRISPT 371
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.4 bits (124), Expect = 8e-08
Identities = 45/330 (13%), Positives = 95/330 (28%), Gaps = 13/330 (3%)
Query: 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEAL 365
EL +AG E A M + ++ + ++ L ++ + RL+ + A+
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTL--AI 60
Query: 366 QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEK 425
+ P +L + E + L F + +
Sbjct: 61 KQNPL---LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM 117
Query: 426 AHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIK 485
+ + + P S + KA + + A ++ +
Sbjct: 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGC 177
Query: 486 HFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP 545
F G + A+ F + L + Y L + + A + D A + R
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-N 235
Query: 546 DINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEAARL 604
H + + G A++ + + E++P +Y + L G EA
Sbjct: 236 HAVVHGNLACVYYEQGLIDLAIDTYRRA--IELQPHFPDAYCNLANALKEKGSVAEAEDC 293
Query: 605 MKD--MNAKGFEYDQITYSSILEAVGKVDE 632
++I G ++E
Sbjct: 294 YNTALRLCPTHADSLNNLANIKREQGNIEE 323
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (121), Expect = 2e-07
Identities = 55/367 (14%), Positives = 115/367 (31%), Gaps = 17/367 (4%)
Query: 243 KLGRDISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV 301
+ G +A R ++ +P + L SI+F+ ++++ A+
Sbjct: 11 QAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTL------AIKQ 62
Query: 302 Y-TYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360
E LG + + + + I+ IN+ D
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420
+ + E + +S L F
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182
Query: 421 NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVY 480
+ A E+ P AY +L N +A+ ++ A +L + A V+
Sbjct: 183 GEIWLAIHHFEKAVTL-DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240
Query: 481 AVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEE 540
+ + + G + A+D + +L+ Y L + + G + +A
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALR 299
Query: 541 DGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFE 599
C +S N + N + G + A+ ++ K E+ P+ A +++ + L + G +
Sbjct: 300 L-CPTHADSLNNLANIKREQGNIEEAVRLYRKAL--EVFPEFAAAHSNLASVLQQQGKLQ 356
Query: 600 EAARLMK 606
EA K
Sbjct: 357 EALMHYK 363
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 38.1 bits (88), Expect = 0.002
Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 6/137 (4%)
Query: 313 RAGRVEDAYGLFMNMLKEGCKP-DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNV 371
G+++ A L + +K P D L ++ I +L G E A + + L +
Sbjct: 8 SEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65
Query: 372 VTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLE 431
++ L ++ + + K G + + + E+ L
Sbjct: 66 GASQ--LRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELAL 123
Query: 432 EMEEKGFPPCPAAYCSL 448
++EE
Sbjct: 124 QIEEL-RQEKGFLANDT 139
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 638 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.56 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.26 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.21 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.18 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.17 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.16 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.15 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.04 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.03 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.01 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.94 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.65 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.58 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.55 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.52 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.5 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.5 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.5 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.46 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.44 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.38 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.37 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.31 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.25 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.19 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.16 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.15 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.03 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.02 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.01 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.99 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.97 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.9 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.88 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.86 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.82 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.82 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.81 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.8 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.72 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.69 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.65 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.61 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.6 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.56 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.47 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.44 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.36 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.03 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.91 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.58 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.19 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.15 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.23 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.5 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.89 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 93.68 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.9 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.15 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.17 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 89.14 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 86.71 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=4.6e-21 Score=190.12 Aligned_cols=382 Identities=14% Similarity=0.085 Sum_probs=192.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 006614 131 LIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY 210 (638)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 210 (638)
+...+.+.|++++|.+.++++++.. |-++.++..+..++.+.|++++|...|+++.+..+. +..+|..+...|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcc
Confidence 3445556666666666666665542 334556666666666666666666666666554322 45566666666666666
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006614 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQ 290 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 290 (638)
+++|++.+.......+ .+..............+....+........... .................+....+...+.
T Consensus 83 ~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKP--DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred cccccccccccccccc--ccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHH
Confidence 6666666666665543 344444444444444444444444444333322 2233333344444445555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 006614 291 EMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN 370 (638)
Q Consensus 291 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 370 (638)
......+. +...+..+...+...|++++|...+++..+..+. +..++..+...+...|++++|...++......
T Consensus 160 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---- 233 (388)
T d1w3ba_ 160 KAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS---- 233 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC----
T ss_pred HhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh----
Confidence 54443322 3444555555555555555555555555544322 34445555555555555555555544433211
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006614 371 VVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLIN 450 (638)
Q Consensus 371 ~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 450 (638)
+.+...+..+...+.+.|++++|...+++..+.. +.++.++..+..
T Consensus 234 ---------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 279 (388)
T d1w3ba_ 234 ---------------------------------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLAN 279 (388)
T ss_dssp ---------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHH
T ss_pred ---------------------------------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 1223334444555555666666666666655543 444555555555
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 006614 451 GYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDD 530 (638)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 530 (638)
.+...|++++|.+.++..... .+.+...+..+...+...|++++|+..|++..+.. +.+..++..+...|.+.|++++
T Consensus 280 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 357 (388)
T d1w3ba_ 280 ALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 555555555555555555443 23344444555555555555555555555544432 1123344444444445555555
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 006614 531 AYSLLRRMEEDGCVP-DINSHNIILNGLAKSG 561 (638)
Q Consensus 531 A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g 561 (638)
|.+.|+++++. .| +...|..+...|.+.|
T Consensus 358 A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 358 ALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 55555544442 22 2344444444444443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=6.7e-21 Score=188.87 Aligned_cols=209 Identities=17% Similarity=0.154 Sum_probs=105.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHH
Q 006614 416 GFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSD 495 (638)
Q Consensus 416 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 495 (638)
.+...|++++|...+++..+.. +.+..++..+...+...|++++|...+...... .+.+...+..+...+.+.|++++
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 255 (388)
T d1w3ba_ 178 VFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-SPNHAVVHGNLACVYYEQGLIDL 255 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHH-hhhHHHHHHHHHHHHHHCCCHHH
Confidence 3344444444444444444332 333444444444444444444444444444443 22333444444555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 496 AVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 496 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
|...|++..+.. +.+..++..+...+...|++++|.+.++...... +.+...+..+...+.+.|++++|+..|++..+
T Consensus 256 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 333 (388)
T d1w3ba_ 256 AIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555554432 2234455555555555666666666665555442 33455555555666666666666666666554
Q ss_pred CCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHhccCC
Q 006614 576 SEIKP-DAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYD-QITYSSILEAVGKVDE 632 (638)
Q Consensus 576 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 632 (638)
. .| +..++..+..+|.+.|++++|.+.|++..+. .|+ ...|..+...+.+.||
T Consensus 334 ~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 334 V--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp S--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 2 23 3445555666666666666666666665532 333 3455555555555543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.2e-12 Score=123.25 Aligned_cols=267 Identities=10% Similarity=0.018 Sum_probs=121.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006614 274 SIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLE 353 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 353 (638)
..+.+.|++++|+..|+++.+..+. +..+|..+..++...|++++|...|++..+..+. +...+..+...|...|+++
T Consensus 27 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~ 104 (323)
T d1fcha_ 27 LRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQR 104 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccccc
Confidence 3344455555555555555544332 3444555555555555555555555555444322 3444455555555555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006614 354 DALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEM 433 (638)
Q Consensus 354 ~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 433 (638)
+|.+.++.+.... |+............. ..+.......+..+...+.+.+|...+.+.
T Consensus 105 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 105 QACEILRDWLRYT--PAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHhc--cchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 5555555544422 211110000000000 000000001111222333444455555544
Q ss_pred HhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006614 434 EEKG-FPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDV 512 (638)
Q Consensus 434 ~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 512 (638)
.+.. -..+..++..+...+...|++++|...+++.... .+.+...|..+...|...|++++|...|++..+.. +-+.
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 240 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYI 240 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc-ccccccchhhhhhcccccccchhHHHHHHHHHHHh-hccH
Confidence 4322 1233445555555555556666666665555544 22345555555556666666666666666555432 2234
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHC----------CCCCCHHHHHHHHHHHHhcCChHHH
Q 006614 513 YTYNALMSGMVRAGMIDDAYSLLRRMEED----------GCVPDINSHNIILNGLAKSGGPKRA 566 (638)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----------~~~p~~~~~~~l~~~~~~~g~~~~A 566 (638)
..|..+..+|.+.|++++|++.|++.++. ........|..+-.++...|+.+.+
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 45555566666666666666666655531 1122344455555566555655444
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.5e-12 Score=124.47 Aligned_cols=222 Identities=11% Similarity=0.051 Sum_probs=100.1
Q ss_pred cchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 006614 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
++.+.|+..|+.+.+.. |.+..+|..+..++...|++++|...+.+.++.. +-+...+..++..|...|++++|.+.
T Consensus 33 g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~ 109 (323)
T d1fcha_ 33 GDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEI 109 (323)
T ss_dssp TCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccccccccc
Confidence 44555555555554433 3345555555555555555555555555554432 33444555555555555555555555
Q ss_pred HHHhhhCCCCC--------------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChH
Q 006614 183 FYQIKSRKCKP--------------TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI 248 (638)
Q Consensus 183 ~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 248 (638)
+.+........ +.......+..+...+.+.+|.+.|.+.....+...+...+..+...+...|+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~ 189 (323)
T d1fcha_ 110 LRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD 189 (323)
T ss_dssp HHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHH
T ss_pred hhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHh
Confidence 55544331110 0000001111222333444444444444443332233444444444444455555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 249 SAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 249 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
+|+..+++..... +-+..+|..+...|.+.|++++|.+.+++..+..+. +..+|..+..+|.+.|++++|+..|++.+
T Consensus 190 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 267 (323)
T d1fcha_ 190 KAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEAL 267 (323)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555444331 123444444444455555555555555444443222 34444444444555555555555544444
Q ss_pred H
Q 006614 329 K 329 (638)
Q Consensus 329 ~ 329 (638)
+
T Consensus 268 ~ 268 (323)
T d1fcha_ 268 N 268 (323)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.9e-09 Score=101.42 Aligned_cols=217 Identities=10% Similarity=0.045 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK-MVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
..+|+.+..++.+.+.+++|+++++.+++.+ |-+..+|+....++...| ++++|+..+++..+..+. +..+|+.+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence 3567777788888999999999999998863 566778888888888866 589999999998877544 7889999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE-- 281 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-- 281 (638)
.+.+.|++++|++.++++.+..+ .+...|..+...+...|++++|++.++++++.. +.+...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp--~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDA--KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHhhccHHHHHHHHhhhhhhhh--cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccc
Confidence 99999999999999999998876 678899999999999999999999999999864 3367788887777776665
Q ss_pred ----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 006614 282 ----VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP-DIVLINNLINVLGR 348 (638)
Q Consensus 282 ----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 348 (638)
+++|++.+.+..+..+. +...|..+...+.. ...+++...++...+....+ +...+..++..|..
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 67888888888887654 67777766655544 44677778887776654332 45556666666543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=3.7e-09 Score=99.37 Aligned_cols=198 Identities=9% Similarity=0.068 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY-YEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
.+++.+...+.+.+.+++|+..++++.+..+. +..+|+....++...|+ +++|++.+++..+..+ .+..+|..+..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p--~~~~a~~~~~~ 120 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP--KNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH--hhhhHHHHHhH
Confidence 45566666777788888888888888877544 77778888877777664 7888888888877765 56778888888
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---
Q 006614 240 AFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR--- 316 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--- 316 (638)
.+.+.|++++|++.++++.+.. +.+...|..+...+.+.|++++|++.++++++.++. +...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence 8888888888888888887753 336777888888888888888888888888877654 66677766666555444
Q ss_pred ---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 006614 317 ---VEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEAL 365 (638)
Q Consensus 317 ---~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 365 (638)
+++|+..+...++..+. +...|+.+...+... ..+++.+.++...+.
T Consensus 199 ~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDR-GLSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTT-CGGGCHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHhc-ChHHHHHHHHHHHHh
Confidence 56777777777776543 666666665554433 346666666666543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=4.8e-08 Score=93.62 Aligned_cols=303 Identities=13% Similarity=0.041 Sum_probs=189.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 006614 272 LVSIYFKLGEVEKALGLVQEMKGKGCALT----VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK-PD----IVLINNL 342 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l 342 (638)
....+...|++++|++++++..+..+..+ ...+..+...+...|++++|...|++..+.... ++ ...+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 44556677777777777777766533222 235566677777888888888888777652111 11 2345566
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006614 343 INVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNR 422 (638)
Q Consensus 343 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 422 (638)
...+...|++..+...+....... ..............+..+...+...|+
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~-----------------------------~~~~~~~~~~~~~~~~~la~~~~~~~~ 148 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLI-----------------------------NEQHLEQLPMHEFLVRIRAQLLWAWAR 148 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH-----------------------------HHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----------------------------HhcccchhhHHHHHHHHHHHHHHHhcc
Confidence 677778888888888777654310 000000000011234455667778888
Q ss_pred HHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC----C--cHHHHHHHHHHHHccCC
Q 006614 423 VEKAHLLLEEMEEKG----FPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC----S--SARVYAVMIKHFGKCGR 492 (638)
Q Consensus 423 ~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~--~~~~~~~li~~~~~~g~ 492 (638)
++.+...+....... .......+......+...++..++...+......... + ....+..+...+...|+
T Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T d1hz4a_ 149 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 228 (366)
T ss_dssp HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhccc
Confidence 888888888776532 1223345556666777788888888887776542111 1 13345666777888899
Q ss_pred HHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCChH
Q 006614 493 LSDAVDLFNEMKKLRCKP---DVYTYNALMSGMVRAGMIDDAYSLLRRMEE----DGCVPD-INSHNIILNGLAKSGGPK 564 (638)
Q Consensus 493 ~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~~~ 564 (638)
+++|...+.+..+..... ....+..+...+...|++++|...++++.. .+..|+ ...+..+...|...|+++
T Consensus 229 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 308 (366)
T d1hz4a_ 229 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 308 (366)
T ss_dssp HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHH
Confidence 999999988876543222 234556677888899999999999988764 233333 456777888899999999
Q ss_pred HHHHHHHHhhh----CCCCC----CHHHHHHHHHHHHccCCHHHHHH
Q 006614 565 RAMEIFTKMQH----SEIKP----DAVSYNTILGCLSRAGMFEEAAR 603 (638)
Q Consensus 565 ~A~~~~~~m~~----~~~~p----~~~~~~~l~~~~~~~g~~~~A~~ 603 (638)
+|.+.+++..+ .|... ....+..++..+...++.+++.+
T Consensus 309 ~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 309 DAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 99999988754 12211 12234455566666676666544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=7.9e-09 Score=97.02 Aligned_cols=187 Identities=17% Similarity=0.180 Sum_probs=138.9
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 006614 175 MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLF 254 (638)
Q Consensus 175 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 254 (638)
..++|..+|++..+..++.+...|...+..+.+.|++++|..+|++++...+. .....|...+..+.+.|+++.|.++|
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~-~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45778888888876544556777888888888888888888888888876542 23456788888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-
Q 006614 255 DEMKENGLQPTAKIYTTLVSI-YFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC- 332 (638)
Q Consensus 255 ~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 332 (638)
+.+.+.+ +.+...|...+.. +...|+.+.|..+|+.+.+..+. +...|...++.+.+.|+++.|..+|++.++...
T Consensus 158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 8888764 2344455444443 34467888888888888876433 677888888888888999999999988877642
Q ss_pred CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 333 KP--DIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 333 ~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
.| ....|...+..-...|+.+.+.++++++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 32 245778888877788999988888887755
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.16 E-value=1.1e-08 Score=96.09 Aligned_cols=218 Identities=6% Similarity=0.018 Sum_probs=171.1
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHh--------------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 006614 108 KIQFFKWAGRRRNFEHNSTTYMALIRCLDE--------------TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKA 173 (638)
Q Consensus 108 a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 173 (638)
+..+|+.+...- ++++..|..-+.-+.+ .+..++|..+++..++...+.+...+...+....+.
T Consensus 35 v~~vyerAl~~~--~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~ 112 (308)
T d2onda1 35 VMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 444566555433 4466667665554432 334578999999998766677788899999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHccCChHHHHH
Q 006614 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA-FGKLGRDISAIR 252 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~ 252 (638)
|+++.|..+|+++.+.........|...+..+.+.|++++|.++|+++++..+ .+...|...... +...|+.+.|..
T Consensus 113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~--~~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHhccCHHHHHH
Confidence 99999999999998875554566899999999999999999999999998776 344444444433 345689999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006614 253 LFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGC-AL--TVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 253 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
+|+.+.+. .+.+...|...+..+.+.|+.+.|..+|++...... .| ....|...+..-...|+.+.+..+++++.+
T Consensus 191 i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 191 IFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999986 345788999999999999999999999999887643 33 356788888888889999999999998876
Q ss_pred c
Q 006614 330 E 330 (638)
Q Consensus 330 ~ 330 (638)
.
T Consensus 270 ~ 270 (308)
T d2onda1 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=3.8e-08 Score=94.37 Aligned_cols=276 Identities=15% Similarity=0.056 Sum_probs=154.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHHH
Q 006614 200 SMILMLMQEGYYEKIHELYNEMCNEGNCFPD---TVTYSALISAFGKLGRDISAIRLFDEMKEN----GLQP-TAKIYTT 271 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~ 271 (638)
.....+...|++++|++++++.+...+..++ ...+..+...+...|++++|+..+++..+. +..+ ....+..
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 3445556677777777777776664432111 234555666666677777777777665532 1000 1234455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHH
Q 006614 272 LVSIYFKLGEVEKALGLVQEMKGK----GCA--L-TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC----KPDIVLIN 340 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~ 340 (638)
+...+...|++..+...+...... +.. + ....+..+...+...|+++.+...+........ .....++.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 566677777777777777665431 111 1 123445556677777888888777777765321 22234455
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006614 341 NLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420 (638)
Q Consensus 341 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 420 (638)
.....+...++...+...+........ ..+..... ....+......+...
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~---------------~~~~~~~~---------------~~~~~~~~~~~~~~~ 226 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLG---------------NGKYHSDW---------------ISNANKVRVIYWQMT 226 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHT---------------TSCCCHHH---------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHH---------------HhcccCch---------------HHHHHHHHHHHHHhc
Confidence 556666677777777766665533100 00000000 112334455667778
Q ss_pred CCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccCC
Q 006614 421 NRVEKAHLLLEEMEEKGFPPC---PAAYCSLINGYGKAKRYEAANELFLELKEY----CGCS-SARVYAVMIKHFGKCGR 492 (638)
Q Consensus 421 g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~ 492 (638)
|++++|...+++........+ ...+..+...+...|++++|...++.+... +..| ....+..+...|...|+
T Consensus 227 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 306 (366)
T d1hz4a_ 227 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 306 (366)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCC
Confidence 888888888877665432222 234555667777777888877777766532 1212 23455566666677777
Q ss_pred HHHHHHHHHHHHh
Q 006614 493 LSDAVDLFNEMKK 505 (638)
Q Consensus 493 ~~~A~~~~~~m~~ 505 (638)
+++|.+.+++..+
T Consensus 307 ~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 307 KSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=5.7e-09 Score=95.35 Aligned_cols=197 Identities=15% Similarity=-0.023 Sum_probs=92.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
++..+..+|.+.|++++|...|++..+..+. ++.+|+.+..+|.+.|++++|++.|+++.+..+ .+..++..+...+
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP--TYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh--hhhhhHHHHHHHH
Confidence 4444555555555555555555555554322 555555566666666666666666666655543 3344555555555
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----H
Q 006614 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR----V 317 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----~ 317 (638)
...|++++|.+.|+...+.. +.+......+...+.+.+..+.+..+..........+. .++ ++..+..... .
T Consensus 116 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW--GWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST--HHH-HHHHHTTSSCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh--hhh-HHHHHHHHHHHHHHH
Confidence 56666666666666555542 12333333333333444444444444433333221111 111 1111111111 1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006614 318 EDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 318 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
+.+...+........ -...++..+...|...|++++|.+.|+......
T Consensus 192 ~~~~~~~~~~~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 192 ERLKADATDNTSLAE-HLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHCCSHHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhcCc-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 111111111111000 012345566777777777777777777776643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=7e-09 Score=94.76 Aligned_cols=219 Identities=12% Similarity=0.003 Sum_probs=151.4
Q ss_pred HHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 006614 107 VKIQFFKWAGRRRNFEH--NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFY 184 (638)
Q Consensus 107 ~a~~~f~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 184 (638)
.++.-+..+.......+ ...+|..+..+|.+.|++++|...|+..++.. +-++.+++.+..++.+.|++++|+..|+
T Consensus 17 ~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 95 (259)
T d1xnfa_ 17 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFD 95 (259)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence 44444444443332221 34578888999999999999999999999863 6678999999999999999999999999
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 006614 185 QIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP 264 (638)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 264 (638)
++.+..+. +..++..+..+|...|++++|.+.|+...+..+ .+......+...+.+.+..+.+..+........ +
T Consensus 96 ~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 170 (259)
T d1xnfa_ 96 SVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--K 170 (259)
T ss_dssp HHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--C
T ss_pred HHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--h
Confidence 99987543 677899999999999999999999999998775 455555555555666666666666666655542 2
Q ss_pred CHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006614 265 TAKIYTTLVSIYFKLGEV----EKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK 333 (638)
Q Consensus 265 ~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 333 (638)
+...++ ++..+...... +.+...+........ -...+|..+...+...|++++|...|+..+...+.
T Consensus 171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 171 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAE-HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 222222 23333222222 222222211111100 02346677889999999999999999999986543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.01 E-value=2.1e-09 Score=102.52 Aligned_cols=145 Identities=6% Similarity=-0.025 Sum_probs=79.8
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHH----------HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006614 211 YEKIHELYNEMCNEGNCFPDTVTYSALISA----------FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
.++|++++++++...| -+...|+..-.. +...|++++|+.+++...+.. +-+...|..+..++...+
T Consensus 45 ~~~al~~~~~~l~~~P--~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 45 DESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp SHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence 3566666666665543 223333222111 122334566666666666542 235555655555555544
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 006614 281 --EVEKALGLVQEMKGKGCALTVYTYT-ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALK 357 (638)
Q Consensus 281 --~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 357 (638)
++++|...++++.+.... +...+. .....+...+..++|+..++.+++..+. +...|+.+...+.+.|++++|..
T Consensus 122 ~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHH
Confidence 366777777776665433 344433 3345555667777777777777666544 66667777777777776665544
Q ss_pred HHH
Q 006614 358 LFN 360 (638)
Q Consensus 358 ~~~ 360 (638)
.+.
T Consensus 200 ~~~ 202 (334)
T d1dcea1 200 QGR 202 (334)
T ss_dssp CCS
T ss_pred HHH
Confidence 333
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.94 E-value=3e-09 Score=101.44 Aligned_cols=256 Identities=7% Similarity=-0.013 Sum_probs=183.0
Q ss_pred chHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH----------hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 006614 104 EINVKIQFFKWAGRRRNFEHNSTTYMALIRCLD----------ETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKA 173 (638)
Q Consensus 104 ~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 173 (638)
..+.|+..|..+.... |.+...|+..-..+. ..|++++|...++..++.. +-+...+..+..++...
T Consensus 44 ~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHh
Confidence 3467888888776544 345666765444433 3344778888898888753 56777777777777666
Q ss_pred C--CHHHHHHHHHHhhhCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHH
Q 006614 174 K--MVNKALSIFYQIKSRKCKPTANTYN-SMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISA 250 (638)
Q Consensus 174 g--~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 250 (638)
+ ++++|...+.++.+..+. +...+. .....+...|.+++|+..++.+...++ -+...|+.+...+.+.|++++|
T Consensus 121 ~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p--~~~~a~~~l~~~~~~~~~~~~A 197 (334)
T d1dcea1 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF--SNYSSWHYRSCLLPQLHPQPDS 197 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC--CCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCHHHH
Confidence 5 588999999998876433 566554 445677788999999999999998876 6788899999999999998887
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 251 IRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 251 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
...+....+. .|+ .......+...+..+++...+......... +...+..+...+...|+.++|...+.+....
T Consensus 198 ~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 271 (334)
T d1dcea1 198 GPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELESCKELQELEPE 271 (334)
T ss_dssp SSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7666544432 111 122333455567777788888777766443 4555666677778888999999999888776
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhH
Q 006614 331 GCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTY 374 (638)
Q Consensus 331 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 374 (638)
.+. +..++..+...+...|++++|.+.++.+.+.. |+...|
T Consensus 272 ~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P~~~~y 312 (334)
T d1dcea1 272 NKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAY 312 (334)
T ss_dssp CHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--GGGHHH
T ss_pred Cch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cccHHH
Confidence 433 56677888889999999999999999998844 654444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=9e-07 Score=75.69 Aligned_cols=125 Identities=14% Similarity=0.074 Sum_probs=77.5
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006614 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
..+...|++++|++.|.++. +|+..+|..+..+|...|++++|++.|++.++.++ .+...|..+..++.+.|++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp--~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh--hhhhhHHHHHHHHHhhccH
Confidence 34455666666666666542 34556666666666666666666666666666554 4566666666666666666
Q ss_pred HHHHHHHHHHHHCC------------C--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006614 248 ISAIRLFDEMKENG------------L--QP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA 298 (638)
Q Consensus 248 ~~A~~~~~~m~~~g------------~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 298 (638)
++|+..|++..... . .+ ...++..+..++.+.|++++|.+.+....+..+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 66666666655421 0 00 1234556667777788888888887777765443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=2.3e-06 Score=73.03 Aligned_cols=140 Identities=10% Similarity=-0.064 Sum_probs=90.1
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 006614 485 KHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPK 564 (638)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 564 (638)
..+...|++++|++.|+++. +|+..+|..+..+|...|++++|++.|++.++.. +-+...|..+..++.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHH
Confidence 34556677777777776532 4566667777777777777777777777777754 224667777777777777777
Q ss_pred HHHHHHHHhhhCC------------C--CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhc
Q 006614 565 RAMEIFTKMQHSE------------I--KPD-AVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGK 629 (638)
Q Consensus 565 ~A~~~~~~m~~~~------------~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 629 (638)
+|...|++..... . .++ ..++..+..++.+.|++++|.+.++...+....++.......+..+.+
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~~ 167 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWK 167 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh
Confidence 7777777765320 0 011 244556667778888888888888887755444444455555554444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.55 E-value=2.1e-06 Score=79.10 Aligned_cols=133 Identities=9% Similarity=-0.050 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC-----CCCHH
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRS----TCV-MGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKC-----KPTAN 196 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~ 196 (638)
.|......|...|++++|.+.|...... +-+ .-..+|..+..+|.+.|++++|...|++..+... .....
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 3444566677777777777777766542 100 1123556666666666666666666665433210 00122
Q ss_pred HHHHHHHHHHh-cCCHhHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 197 TYNSMILMLMQ-EGYYEKIHELYNEMCNEGNCFP----DTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 197 ~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
++..+...|.. .|++++|++.|++......... -..++..+...+...|++++|++.++++..
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 33344444432 3566666666555432110000 122344445555555555555555555444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=2.6e-06 Score=65.91 Aligned_cols=90 Identities=18% Similarity=0.065 Sum_probs=40.5
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEV 282 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 282 (638)
..+.+.|++++|+..|++.++..+ .+...|..+..++...|++++|+..++...+.. +.+...|..+..++...|++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC--cchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 334444444444444444444433 344444444444444444444444444444432 22344444444444444444
Q ss_pred HHHHHHHHHHHhC
Q 006614 283 EKALGLVQEMKGK 295 (638)
Q Consensus 283 ~~A~~~~~~m~~~ 295 (638)
++|+..+++..+.
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=3e-06 Score=78.04 Aligned_cols=201 Identities=13% Similarity=0.030 Sum_probs=128.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhC----CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC----HHH
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSR----KC-KPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD----TVT 233 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~ 233 (638)
|....+.|...|++++|...|.+..+. +- ..-..+|+.+..+|.+.|++++|++.+++.........+ ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 334457788899999999999887653 11 112457888889999999999999999877543211112 344
Q ss_pred HHHHHHHHH-ccCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----H-
Q 006614 234 YSALISAFG-KLGRDISAIRLFDEMKEN----GLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT-----V- 301 (638)
Q Consensus 234 ~~~l~~~~~-~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~- 301 (638)
+..+...+- ..|++++|++.+++..+. +.++ -..++..+...+.+.|++++|++.+++......... .
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 555666664 468899999888877532 2111 134577788888889999999998888776532211 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHHHc--cCCHHHHHHHHHHHH
Q 006614 302 YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK-PD---IVLINNLINVLGR--AGRLEDALKLFNKME 363 (638)
Q Consensus 302 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~---~~~~~~li~~~~~--~g~~~~A~~~~~~~~ 363 (638)
..+...+..+...|+++.|...+++..+..+. ++ ......++.++.. .+.+++|+.-|+.+.
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 22334455667788888888888888765321 11 2234555555544 234677777666544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=2.5e-06 Score=66.08 Aligned_cols=92 Identities=17% Similarity=0.062 Sum_probs=62.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC
Q 006614 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG 245 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 245 (638)
-.+.+.+.|++++|+..|.+..+..+. +...|..+..+|.+.|++++|+..+++..+.++ .+...|..+..++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhcc--chhhHHHHHHHHHHHcc
Confidence 345566667777777777776665332 666677777777777777777777777776655 56666777777777777
Q ss_pred ChHHHHHHHHHHHHC
Q 006614 246 RDISAIRLFDEMKEN 260 (638)
Q Consensus 246 ~~~~A~~~~~~m~~~ 260 (638)
++++|+..|++..+.
T Consensus 86 ~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKH 100 (117)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777777664
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.50 E-value=9.2e-05 Score=66.67 Aligned_cols=224 Identities=13% Similarity=0.016 Sum_probs=151.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGK----AKMVNKALSIFYQIKSRKCKPTANTYN 199 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 199 (638)
|+..+..+...+.+.+++++|++.|+...+.| +...+..+...|.. ..+...|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 45566777777788888899998888887754 56667777777765 568888888888887764 455555
Q ss_pred HHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH----ccCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006614 200 SMILMLMQ----EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG----KLGRDISAIRLFDEMKENGLQPTAKIYTT 271 (638)
Q Consensus 200 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 271 (638)
.+...+.. ....+.|...++.....+. +.. ...+...+. .......+...+...... .+...+..
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a--~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~ 147 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEG--CASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTI 147 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHH--HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh--hhH--HHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhh
Confidence 55555543 4567888888888877653 222 222222222 234566777777776664 36677777
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006614 272 LVSIYFK----LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR----AGRVEDAYGLFMNMLKEGCKPDIVLINNLI 343 (638)
Q Consensus 272 li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 343 (638)
|...|.. ..+...+...++...+.| +......+...+.. ..++++|..+|....+.| +...+..|.
T Consensus 148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG 221 (265)
T d1ouva_ 148 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 221 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred hhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHH
Confidence 7777775 456777777777777664 55555555555554 567888888888888776 456666677
Q ss_pred HHHHc----cCCHHHHHHHHHHHHHCC
Q 006614 344 NVLGR----AGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 344 ~~~~~----~g~~~~A~~~~~~~~~~~ 366 (638)
..|.+ ..+.++|.++|++..+.|
T Consensus 222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 222 AMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 77664 346778888888876655
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=2.1e-06 Score=70.90 Aligned_cols=91 Identities=16% Similarity=0.077 Sum_probs=53.0
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC
Q 006614 167 VNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR 246 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 246 (638)
.+.|.+.|++++|+..|.+..+..+. +...|..+...|...|++++|+..|+++++..+ .+...|..++.++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p--~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHcc--cchHHHHHHHHHHHHcCC
Confidence 34555566666666666665555322 555566666666666666666666666655543 445556666666666666
Q ss_pred hHHHHHHHHHHHHC
Q 006614 247 DISAIRLFDEMKEN 260 (638)
Q Consensus 247 ~~~A~~~~~~m~~~ 260 (638)
+++|...+++..+.
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 66666666666554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=4e-06 Score=69.16 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=75.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006614 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
......|.+.|++++|+..|++..+..+ .+...|..+...+...|++++|++.|++.++.. +-+..+|..++.++..
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccch--hhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence 3345567788888888888888888765 577778888888888888888888888887753 3356777778888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006614 279 LGEVEKALGLVQEMKGKGCALTVYTYTE 306 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 306 (638)
.|++++|.+.+++.....+. +...+..
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~-~~~~~~~ 117 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPH-DKDAKMK 117 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCC-CHHHHHH
Confidence 88888888888877776533 3444433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.38 E-value=2.3e-06 Score=74.00 Aligned_cols=93 Identities=14% Similarity=-0.036 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
.+....+.+.+.|++++|+..|.+..+..+ .+...|+.+..+|.+.|++++|+..|++.++..+ -+..+|..+..++
T Consensus 6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p--~~~~a~~~lg~~~ 82 (201)
T d2c2la1 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFFLGQCQ 82 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC--CcHHHHHHHHHHH
Confidence 333334444444444444444444433321 1344444444444444444444444444444332 2333444444444
Q ss_pred HccCChHHHHHHHHHH
Q 006614 242 GKLGRDISAIRLFDEM 257 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m 257 (638)
.+.|++++|+..|++.
T Consensus 83 ~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 83 LEMESYDEAIANLQRA 98 (201)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 4444444444444443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.37 E-value=0.00039 Score=62.39 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCC
Q 006614 492 RLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR----AGMIDDAYSLLRRMEEDG 542 (638)
Q Consensus 492 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 542 (638)
++++|...|.+..+.| +...+..|...|.+ ..+.++|.+.|++..+.|
T Consensus 197 d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 197 NFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred chhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 4445555555544443 23333334433332 224555555555555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.31 E-value=4.4e-06 Score=72.06 Aligned_cols=99 Identities=14% Similarity=0.091 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006614 193 PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTL 272 (638)
Q Consensus 193 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 272 (638)
|+...+......|.+.|++++|+..|++++...+ .+...|..+..+|.+.|++++|+..|++..+.. +-+..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p--~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHH
Confidence 5566666667777777777777777777776654 566667777777777777777777777776542 2245566667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 006614 273 VSIYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~ 294 (638)
..+|.+.|++++|+..|++..+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777776666554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.25 E-value=4.4e-06 Score=63.98 Aligned_cols=84 Identities=12% Similarity=0.008 Sum_probs=35.1
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHH
Q 006614 170 LGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDIS 249 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 249 (638)
+.+.|++++|+..|++..+..+. ++.+|..+..++.+.|++++|+..|++..+..+ .+...+..+...+...|++++
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhccccccccccc--ccccchHHHHHHHHHCCCHHH
Confidence 33444444444444444333211 344444444444444444444444444444332 233444444444444444444
Q ss_pred HHHHHHH
Q 006614 250 AIRLFDE 256 (638)
Q Consensus 250 A~~~~~~ 256 (638)
|++.+++
T Consensus 103 A~~~l~~ 109 (112)
T d1hxia_ 103 ALASLRA 109 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=7e-06 Score=63.64 Aligned_cols=96 Identities=13% Similarity=0.067 Sum_probs=63.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHhhhCCCCCC-HHHHHHHHHHH
Q 006614 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKM---VNKALSIFYQIKSRKCKPT-ANTYNSMILML 205 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 205 (638)
.+++.+...+++++|.+.|+..+..+ +.++.++..+..++.+.++ +++|+.+|+++...+..|+ ..++..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45666677777777777777777653 5566777777777765443 3457777777766543333 23566677777
Q ss_pred HhcCCHhHHHHHHHHHHhCCC
Q 006614 206 MQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~ 226 (638)
.+.|++++|++.|+++++..|
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P 103 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEP 103 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhhHHHHHHHHHHHHhCc
Confidence 777777777777777777653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.16 E-value=1e-05 Score=61.91 Aligned_cols=90 Identities=10% Similarity=0.070 Sum_probs=61.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006614 200 SMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (638)
.+...+.+.|++++|+..|++.+...+ .+...|..+...+.+.|++++|+..|++..+.. +.+...|..+...|...
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccccc--ccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence 345566677777777777777777654 456677777777777777777777777766643 23566666677777777
Q ss_pred CCHHHHHHHHHHH
Q 006614 280 GEVEKALGLVQEM 292 (638)
Q Consensus 280 g~~~~A~~~~~~m 292 (638)
|++++|++.+++.
T Consensus 98 g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 98 HNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 7777777766654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=8.3e-06 Score=63.20 Aligned_cols=94 Identities=17% Similarity=0.127 Sum_probs=50.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 006614 200 SMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR---DISAIRLFDEMKENGLQPT-AKIYTTLVSI 275 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~~~-~~~~~~li~~ 275 (638)
.++..+...+++++|.+.|++....++ .+..++..+..++.+.++ +++|+.+++++.+.+..|+ ..++..+..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p--~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 344555555666666666666665554 455555555555554333 2345555655554432222 2245555566
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006614 276 YFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~ 295 (638)
|.+.|++++|++.|+++++.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 66666666666666666554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=9.2e-05 Score=61.33 Aligned_cols=128 Identities=8% Similarity=-0.108 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
.+......+.+.|++++|+..|.+.++....... ....-......+ ...+|+.+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL-------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh-------HHHHHHHHHHHHH
Confidence 4455666777888888888888777653110000 000000000000 1234566667777
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006614 207 QEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
+.|++++|+..++..+...+ .++..+..+..++...|++++|+..|++..+.. +-|..+...+....-+
T Consensus 74 k~~~~~~A~~~~~~al~~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELDS--NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhccc--cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 77777777777777777654 466677777777777777777777777776643 1244444444444333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=0.00013 Score=60.35 Aligned_cols=125 Identities=10% Similarity=-0.025 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.+......+.+.|++++|+..|.+.+...+..+... +.-......+ -..+|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~---------------~~~~~~~~~~-------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS---------------NEEAQKAQAL-------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC---------------SHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc---------------hHHHhhhchh-------HHHHHHHHHHHH
Confidence 344556677777888888888877765432111100 0000000000 112455566666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006614 277 FKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINV 345 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 345 (638)
.+.|++++|+..++..+..++. ++.+|..+..++...|++++|...|++.++..+. |..+...+..+
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~ 139 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVC 139 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred Hhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 6666666666666666665443 5666666666666666666666666666665432 44444444333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.01 E-value=0.0053 Score=56.03 Aligned_cols=16 Identities=6% Similarity=-0.060 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHcCCh
Q 006614 513 YTYNALMSGMVRAGMI 528 (638)
Q Consensus 513 ~~~~~l~~~~~~~g~~ 528 (638)
...+++...|...+++
T Consensus 281 ~vn~al~~lyie~~d~ 296 (336)
T d1b89a_ 281 SVNESLNNLFITEEDY 296 (336)
T ss_dssp HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCcchh
Confidence 4455555555555554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.99 E-value=0.0057 Score=55.82 Aligned_cols=271 Identities=13% Similarity=0.075 Sum_probs=150.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006614 299 LTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVI 378 (638)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 378 (638)
||..-....++-|.+.|.++.|..+|..+. -|..++..+.+.+++..|.+.+.+. -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 344444555666777778877877776543 2455667777777888777776654 2455676676
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 006614 379 KSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRY 458 (638)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 458 (638)
..+.+.....- ..+.......++.....++..|-..|.+++...+++...... +.+...++.++..|++.+.
T Consensus 77 ~~l~~~~e~~l------a~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~- 148 (336)
T d1b89a_ 77 FACVDGKEFRL------AQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP- 148 (336)
T ss_dssp HHHHHTTCHHH------HHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-
T ss_pred HHHHhCcHHHH------HHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-
Confidence 66665544322 122233344566666778888888888888888888776543 5677778888888887643
Q ss_pred HHHHHHHHHHHHcCCCCc----------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 006614 459 EAANELFLELKEYCGCSS----------ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMI 528 (638)
Q Consensus 459 ~~A~~~~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 528 (638)
++..+.+... ....+ ...|..++..|.+.|++++|..+.-.- .++..-....+..+.+.++.
T Consensus 149 ~kl~e~l~~~---s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~-----~~~~~~~~~f~e~~~k~~N~ 220 (336)
T d1b89a_ 149 QKMREHLELF---WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH-----PTDAWKEGQFKDIITKVANV 220 (336)
T ss_dssp HHHHHHHHHH---STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS-----TTTTCCHHHHHHHHHHCSST
T ss_pred HHHHHHHHhc---cccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc-----chhhhhHHHHHHHHHccCCh
Confidence 3333333222 11111 112456666677777777766554321 23333344455566666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHH-----------HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCC
Q 006614 529 DDAYSLLRRMEEDGCVPDINS-----------HNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGM 597 (638)
Q Consensus 529 ~~A~~~~~~m~~~~~~p~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 597 (638)
+...++....++. .|+... -..++..+.+.+++.....+++...+.| +....+++...|...++
T Consensus 221 e~~~~~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d 295 (336)
T d1b89a_ 221 ELYYRAIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEED 295 (336)
T ss_dssp HHHHHHHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcch
Confidence 6665555555542 232110 1223444555666666666666655444 34678899999999998
Q ss_pred HHHHHHHH
Q 006614 598 FEEAARLM 605 (638)
Q Consensus 598 ~~~A~~~~ 605 (638)
++.-.+.+
T Consensus 296 ~~~l~~~i 303 (336)
T d1b89a_ 296 YQALRTSI 303 (336)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 76644444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=4.9e-05 Score=59.55 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=41.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC-----HHHHHHHHHH
Q 006614 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD-----TVTYSALISA 240 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~ 240 (638)
+.+.+.+.|++++|+..|.+..+.++. +...+..+..+|.+.|++++|+..++++++..+..++ ..+|..+...
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555444322 4445555555555555555555555554432211011 1233344444
Q ss_pred HHccCChHHHHHHHHHHH
Q 006614 241 FGKLGRDISAIRLFDEMK 258 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~ 258 (638)
+...+++++|++.|++..
T Consensus 89 ~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 444445555555544443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.90 E-value=0.00015 Score=58.69 Aligned_cols=122 Identities=9% Similarity=-0.081 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
.+......+.+.|++.+|+..|.+.++.-.... ... +.... ..... ....+|+.+..+|.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~-------------~~~-~~~~~--~~~~~----~~~~~~~Nla~~~~ 78 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE-------------EWD-DQILL--DKKKN----IEISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT-------------TCC-CHHHH--HHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchh-------------hhh-hHHHH--Hhhhh----HHHHHHhhHHHHHH
Confidence 455566677788888888888888776311000 000 00000 00000 02345666777777
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 006614 207 QEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP-TAKIYTTL 272 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l 272 (638)
+.|++++|++.+++++..++ .+..+|..+..++...|++++|+..|+...+.. | |..+...+
T Consensus 79 ~l~~~~~Al~~~~~al~~~p--~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~--P~n~~~~~~l 141 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLKIDK--NNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSY 141 (153)
T ss_dssp HTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred Hhcccchhhhhhhccccccc--hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 77777778777777777665 567777777777777788888887777777653 3 34444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.88 E-value=0.00011 Score=60.94 Aligned_cols=130 Identities=8% Similarity=-0.008 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 006614 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
+......+.+.|++.+|++.|.++++.. ..........+... +. +.....|..+..++.+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~~~~----~~----~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDADGAK----LQ----PVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHHHGG----GH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHHHHH----hC----hhhHHHHHHHHHHHHh
Confidence 3445666778888888888887765410 00000000010000 00 1144456666677777
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006614 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
.|++++|+..++++++..+ .+...|..+..++...|++++|++.|+...+.. +.+..+...+..+..+..
T Consensus 90 ~~~~~~Ai~~~~~al~~~p--~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEIDP--SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIK 159 (169)
T ss_dssp TTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhh--hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 7777777777777777655 566677777777777777777777777777652 224555555555444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=7.8e-05 Score=58.33 Aligned_cols=97 Identities=12% Similarity=0.134 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CC-----HHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQ-PT-----AKIYT 270 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-~~-----~~~~~ 270 (638)
.+..+...+.+.|++++|++.|++.++.++ .+...+..+..+|.+.|++++|++.++++++.... +. ..+|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 355677888889999999999999888776 67888888888999999999999998887753100 01 23566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 006614 271 TLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
.+...+...+++++|++.|++....
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 6667777777888888888776654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.82 E-value=0.00041 Score=56.01 Aligned_cols=78 Identities=12% Similarity=-0.027 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006614 231 TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKG 310 (638)
Q Consensus 231 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 310 (638)
..+|+.+..+|.+.|++++|++.++..++.. +.+..+|..+..++...|++++|+..|++..+.++. +......+-..
T Consensus 67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l~~~ 144 (153)
T d2fbna1 67 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3467889999999999999999999999864 458899999999999999999999999999988654 55555554433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.82 E-value=0.00015 Score=60.33 Aligned_cols=125 Identities=11% Similarity=0.073 Sum_probs=81.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 006614 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
.......+...|++++|.+.|...+.. .++.. +......+-+...-..+... ....+..+...+.+
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~--------l~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALRE--WRGPV--------LDDLRDFQFVEPFATALVED----KVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSST--------TGGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--Ccccc--------cccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 344456777888888888888887764 11110 00001111111112222221 34567778888888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE-----NGLQPTAKI 268 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~ 268 (638)
.|++++|+..+++++...+ -+...|..++.++.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 80 ~g~~~~Al~~~~~al~~~P--~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCCchHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 8888888888888888776 6788888888888888888888888887643 477776554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.81 E-value=0.00014 Score=60.11 Aligned_cols=132 Identities=13% Similarity=-0.028 Sum_probs=92.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006614 165 EIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
.....+.+.|++++|+..|.+..+. ...........+ .....+ .+...|..+...+.+.
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~-------~~~~~~--~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDAD-------GAKLQP--VALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHH-------HGGGHH--HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHH-------HHHhCh--hhHHHHHHHHHHHHhh
Confidence 3456677888999998888876542 000001111111 111111 3556778888999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 245 GRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED 319 (638)
Q Consensus 245 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 319 (638)
|++++|+..+++.++.. +.+..+|..+..+|...|++++|++.|++..+..+. +......+..+..+.....+
T Consensus 91 ~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 91 SDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999864 447889999999999999999999999999987654 66667666665544444333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.80 E-value=0.00019 Score=59.24 Aligned_cols=128 Identities=8% Similarity=-0.098 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRS---TCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
..+......+.+.|++.+|...|...+.. ....+.. . ......+ ....|+.+.
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~----------------~-~~~~~~~-------~~~~~~Nla 71 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK----------------E-SKASESF-------LLAAFLNLA 71 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH----------------H-HHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh----------------h-hhhcchh-------HHHHHHhHH
Confidence 35566677788888999998888776542 0011110 0 0000110 123455566
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
.+|.+.|++++|+..+++.+...+ .+...|..+..++...|++++|...|+++.+.. +.+..+...+-.+..+.+
T Consensus 72 ~~~~~l~~~~~Ai~~~~~al~l~p--~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 72 MCYLKLREYTKAVECCDKALGLDS--ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccchhhhhhhhhccc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 666677777777777777766654 566666677777777777777777777776643 224444444444443333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.72 E-value=0.00059 Score=56.10 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006614 232 VTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGL 311 (638)
Q Consensus 232 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 311 (638)
..|+.+..++.+.|++++|+..++...+.. +.+..+|..+..++...|++++|.+.|+++.+..+. +......+-...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 356678888999999999999999999864 458889999999999999999999999999987654 666666665555
Q ss_pred HhcCCHH-HHHHHHHHHH
Q 006614 312 GRAGRVE-DAYGLFMNML 328 (638)
Q Consensus 312 ~~~g~~~-~A~~~~~~~~ 328 (638)
.+.+... ...++|..|.
T Consensus 143 ~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 5544443 3344544444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=1.8e-05 Score=78.71 Aligned_cols=226 Identities=10% Similarity=0.050 Sum_probs=106.6
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHH
Q 006614 107 VKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP-SVLSEIVNILGKAKMVNKALSIFYQ 185 (638)
Q Consensus 107 ~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 185 (638)
.|.+.|+.+.... +....+|..+..++...|++++| +++++.. .|+. ..++.....+ + ..+..+.+.+++
T Consensus 4 eA~q~~~qA~~l~--p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~Lw-~-~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVLK--ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDLW-N-HAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHHH--GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHHH-H-HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHHH-H-HHHHHHHHHHHH
Confidence 4566666664432 11233455566666666666665 4444432 1111 1111111111 0 113445566666
Q ss_pred hhhCCCCCCHHHHHHH--HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC
Q 006614 186 IKSRKCKPTANTYNSM--ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQ 263 (638)
Q Consensus 186 ~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 263 (638)
..+....++....... .......+.++.|+..+....+..+ ++...+..+...+.+.|+.++|...++......
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL--PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHHH--
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh--hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence 5544322222221111 1122234555666655555544333 455667777777777788877777766655421
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006614 264 PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLI 343 (638)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 343 (638)
...++..+...+...|++++|...|++..+..+. +...|+.+...+...|+..+|...|.+.+... +|-..++..|.
T Consensus 151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~ 227 (497)
T d1ya0a1 151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQ 227 (497)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHH
Confidence 1345666777788888888888888887776544 56778888888888888888888888777654 34666677776
Q ss_pred HHHHc
Q 006614 344 NVLGR 348 (638)
Q Consensus 344 ~~~~~ 348 (638)
..+.+
T Consensus 228 ~~~~~ 232 (497)
T d1ya0a1 228 KALSK 232 (497)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.65 E-value=0.00057 Score=56.65 Aligned_cols=123 Identities=14% Similarity=0.067 Sum_probs=70.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006614 200 SMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (638)
.........|++++|.+.|.+.+......+- ......+.+...-+.+... ....+..++..+.+.
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l-----------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVL-----------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTT-----------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCccccc-----------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHC
Confidence 3445667778888888888877764321010 0001111111111122111 234556667777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 006614 280 GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK-----EGCKPDIVL 338 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 338 (638)
|++++|+..++.+.+..+. +...|..++.++.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 81 g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 81 GRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 7777777777777766544 667777777777777777777777776643 366666543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=2.1e-05 Score=78.32 Aligned_cols=132 Identities=14% Similarity=-0.017 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
.++.|+..+....+.. +++...+..+...+.+.|+.++|...+....... ....+..+...+...|++++|...|+
T Consensus 101 ~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~ 176 (497)
T d1ya0a1 101 FYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYR 176 (497)
T ss_dssp HHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3444444333333222 3344455556666666666666666555544321 12345556666666677777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006614 502 EMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK 559 (638)
Q Consensus 502 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 559 (638)
+..+.. +.+...|+.|...+...|+..+|...|.+.+... .|...++..|...+.+
T Consensus 177 ~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 177 HAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 666643 2334566777777777777777777777766643 3456666666655544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.60 E-value=0.00013 Score=58.33 Aligned_cols=69 Identities=6% Similarity=-0.058 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc----------CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006614 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQE----------GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
+.+++|+..|+...+..+. ++.++..+..+|... +.+++|++.|+++++..+ .+..+|..+..+|..
T Consensus 11 ~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P--~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc--hhhHHHhhHHHHHHH
Confidence 3455555555555544322 445555555554432 334566666666666554 455666666665554
Q ss_pred cC
Q 006614 244 LG 245 (638)
Q Consensus 244 ~g 245 (638)
.|
T Consensus 88 ~g 89 (145)
T d1zu2a1 88 FA 89 (145)
T ss_dssp HH
T ss_pred cc
Confidence 43
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.56 E-value=6.9e-05 Score=66.80 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=33.7
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 171 GKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+.|++++|+..|++..+..+. |...+..+...|+..|++++|.+.|+...+..
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~ 60 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF 60 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3456666666666666655333 56666666666666666666666666666654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.47 E-value=0.00033 Score=55.96 Aligned_cols=115 Identities=14% Similarity=0.214 Sum_probs=72.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 136 DETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKA----------KMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
-+.+.+++|.+.++..++.. |.++.++..+..++... +.+++|+..|++..+..+. +..+|..+..+|
T Consensus 8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y 85 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHH
Confidence 34455666666666666643 45555666666555432 3457788888888876543 778888888888
Q ss_pred HhcCC-----------HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006614 206 MQEGY-----------YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 206 ~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
...|+ +++|.+.|++..+.. |+...|..-+..+ ..|.+++.+..+.|
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~---P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ---PDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhcccccC---CCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 76543 577888888888765 4444443333322 35666776666655
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.44 E-value=0.00016 Score=64.41 Aligned_cols=123 Identities=13% Similarity=0.012 Sum_probs=70.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHH
Q 006614 417 FCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDA 496 (638)
Q Consensus 417 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 496 (638)
..+.|++++|+..+++.++.. |.+...+..++..++..|++++|...++...+.. +.+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 345688888888888888776 7777888888888888888888888888877752 22333444333333222222222
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006614 497 VDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 497 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (638)
..-.......+-+++...+......+...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111111011111112233333445566667777777777776654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.36 E-value=0.0016 Score=52.61 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=35.7
Q ss_pred HHHHHH--HHHHHhcCCHhHHHHHHHHHHhCCCCCCC----------HHHHHHHHHHHHccCChHHHHHHHHHHH
Q 006614 196 NTYNSM--ILMLMQEGYYEKIHELYNEMCNEGNCFPD----------TVTYSALISAFGKLGRDISAIRLFDEMK 258 (638)
Q Consensus 196 ~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 258 (638)
.+|..+ ...+.+.|++++|++.|++.+...+..|+ ...|+.+..+|.+.|++++|...+++..
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 345554 44555677777777777777654332232 2345555555555566655555555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.03 E-value=0.0065 Score=48.80 Aligned_cols=91 Identities=23% Similarity=0.149 Sum_probs=59.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCC-CCC----------HHHHHHHHHHHHhcCChHHHHHHHHHhhhC-----CCCCC--
Q 006614 520 SGMVRAGMIDDAYSLLRRMEEDGC-VPD----------INSHNIILNGLAKSGGPKRAMEIFTKMQHS-----EIKPD-- 581 (638)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~m~~~~~-~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~~~p~-- 581 (638)
..+...|++++|+..|++.++... .|+ ...|+.+..+|.+.|++++|...+++.... ...++
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 344556777777777777665210 011 345677777788888888888777776531 12222
Q ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 582 ---AVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 582 ---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
...+..+..+|...|++++|.+.|++..+
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22466678888889999999988888664
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.0028 Score=45.84 Aligned_cols=66 Identities=9% Similarity=-0.033 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCC-----CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRK-----CKP-TANTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
..+..+...+.+.|++++|+..|++..+.. ..+ ...+++.+..++.+.|++++|++.|+++++..|
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P 77 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc
Confidence 334445555555555555555555543320 011 134555666666666666666666666666553
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.0086 Score=43.12 Aligned_cols=77 Identities=10% Similarity=0.011 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRST-----CVM-GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANT 197 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 197 (638)
+...+..+...+.+.|++++|+..+++.++.. ..+ ...+++.+..++.+.|++++|+..|+++.+..+. +..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHH
Confidence 44556678889999999999999999887641 111 2467899999999999999999999999987543 5666
Q ss_pred HHHH
Q 006614 198 YNSM 201 (638)
Q Consensus 198 ~~~l 201 (638)
++.+
T Consensus 83 ~~Nl 86 (95)
T d1tjca_ 83 NGNL 86 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.19 E-value=0.12 Score=39.49 Aligned_cols=13 Identities=23% Similarity=0.232 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHh
Q 006614 282 VEKALGLVQEMKG 294 (638)
Q Consensus 282 ~~~A~~~~~~m~~ 294 (638)
.++|.+.|+...+
T Consensus 75 ~~~A~~~~~~aa~ 87 (133)
T d1klxa_ 75 LRKAAQYYSKACG 87 (133)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhhc
Confidence 3444444444433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.15 E-value=0.11 Score=39.78 Aligned_cols=15 Identities=7% Similarity=-0.024 Sum_probs=6.3
Q ss_pred CHHHHHHHHHHHHhC
Q 006614 597 MFEEAARLMKDMNAK 611 (638)
Q Consensus 597 ~~~~A~~~~~~m~~~ 611 (638)
+.++|.+++++..+.
T Consensus 110 d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 110 NEKQAVKTFEKACRL 124 (133)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
Confidence 344444444444433
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.23 E-value=0.36 Score=35.34 Aligned_cols=67 Identities=22% Similarity=0.154 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006614 546 DINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 546 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 613 (638)
+...++..++.+.++|+-+.-.++++.+.+ +-+|++...-.+..+|.+.|...++.+++.+.-++|+
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 334455556666777777777777777555 3356677777777777777777777777777777665
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.50 E-value=0.58 Score=34.22 Aligned_cols=137 Identities=10% Similarity=0.087 Sum_probs=84.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChh---hHHHHHHHHHhcCCh
Q 006614 311 LGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVV---TYNTVIKSLFESKAP 387 (638)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~ll~~~~~~~~~ 387 (638)
+.-.|.+++..++..+..... +..-||-++.-....-+-+...+.++.+.+. .|.. -...++..+...+
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDls~C~Nlk~vv~C~~~~n-- 83 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKSVVECGVINN-- 83 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHHHHHHHHHTT--
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cCchhhhcHHHHHHHHHHhc--
Confidence 344577777777777776542 4445555555555555556666666655331 1111 1112222222221
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 388 ASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLE 467 (638)
Q Consensus 388 ~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 467 (638)
.+...+...++...+.|+-++-.++++++.+.+ .+++.....+..+|.+.|...++.+++.+
T Consensus 84 -----------------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ 145 (161)
T d1wy6a1 84 -----------------TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIE 145 (161)
T ss_dssp -----------------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 133445566777888888888888888877755 77888888888888888888888888888
Q ss_pred HHHcCC
Q 006614 468 LKEYCG 473 (638)
Q Consensus 468 ~~~~~~ 473 (638)
+.+.|.
T Consensus 146 ACe~G~ 151 (161)
T d1wy6a1 146 ACKKGE 151 (161)
T ss_dssp HHHTTC
T ss_pred HHHHhH
Confidence 877764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.89 E-value=0.25 Score=36.60 Aligned_cols=70 Identities=9% Similarity=-0.025 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHcCC---CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 157 VMGPSVLSEIVNILGKAK---MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
.+++.+-.....++.+.. +.++++.+++++.+.+.......+-.+..+|.+.|++++|...++.+++..|
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP 104 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 104 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555443 3456666776666543221234555666677777777777777777776553
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.68 E-value=0.41 Score=33.17 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 006614 562 GPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 562 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
+.=++.+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-.+.+ +.++..+|..+++-+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqel 85 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 85 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 44466777777777788899999999999999999999999998888764 345566787777644
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.90 E-value=3.8 Score=38.38 Aligned_cols=51 Identities=6% Similarity=-0.057 Sum_probs=27.4
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 555 NGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDM 608 (638)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 608 (638)
..+...|....|...|..+... .+......+.....+.|.++.|+......
T Consensus 389 ~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 389 RELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3445556666666666655532 13334445555556666666666554444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.15 E-value=0.87 Score=33.54 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006614 248 ISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
++++.+|++..+.+ +.+ ...+..|.-+|.+.|++++|.+.++.+++.
T Consensus 55 ~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 55 RLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 34445555444322 111 133344444455555555555555555544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.17 E-value=1.9 Score=29.70 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 140 MIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+.-++.+-+..+...+..|++.+..+.++++-+-+++..|.++|+.++.+ +.++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence 34467777888888888999999999999999999999999999988765 2234456665543
|
| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy-chain linker domain domain: Clathrin heavy-chain linker domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.14 E-value=3.6 Score=31.19 Aligned_cols=119 Identities=8% Similarity=0.089 Sum_probs=73.8
Q ss_pred HHHHHHhccccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006614 93 RLVHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGK 172 (638)
Q Consensus 93 ~~~~~vl~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (638)
.+|-+|++...+++.|+++-. +.|++=....|.--.+.+...|+|.+|-++.-...+ |.-.++.|.+..-.+-..
T Consensus 3 ~ivpyi~~~l~n~~la~~lA~----r~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~-giLRt~~Ti~rFk~~~~~ 77 (157)
T d1bpoa1 3 NIIPYITNVLQNPDLALRMAV----RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQ 77 (157)
T ss_dssp THHHHHHHTTCCHHHHHHHHH----HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCC
T ss_pred chHHHHHhccCCHHHHHHHHH----hcCCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCc-ccccCHHHHHHHHcCCCC
Confidence 467778877888888865444 456666777899999999999999999888765433 455666666554444344
Q ss_pred CCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 006614 173 AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHEL 217 (638)
Q Consensus 173 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 217 (638)
.|+..--+..|..+.+.|. .|..--.-+++.-..+|+.+-...+
T Consensus 78 pGq~spLL~YF~~Ll~~~~-LN~~ESlEl~r~vL~q~r~~lve~W 121 (157)
T d1bpoa1 78 PGQTSPLLQYFGILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKW 121 (157)
T ss_dssp TTSCCHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCC-CchHHhHHHHHHHHhcCcHHHHHHH
Confidence 5555555566666655542 2333333344444455554444333
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=86.71 E-value=12 Score=34.63 Aligned_cols=193 Identities=7% Similarity=-0.052 Sum_probs=105.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHH
Q 006614 421 NRVEKAHLLLEEMEEKGFPPCPAAYCSLI----NGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDA 496 (638)
Q Consensus 421 g~~~~A~~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 496 (638)
.+.+.|..++....... ..+.......- ..+...+..+.+...+......+. +.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHH
Confidence 46777777777766543 23333222222 223345666777777776665432 333334444555667888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006614 497 VDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHS 576 (638)
Q Consensus 497 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 576 (638)
...++.|..... ....-.--+..++...|+.++|...|..+... ++ |-..+.+ .+.|..-. +...
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa-~~Lg~~~~-------~~~~ 369 (450)
T d1qsaa1 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAA-QRIGEEYE-------LKID 369 (450)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHH-HHTTCCCC-------CCCC
T ss_pred HHHHHhcCcccc-cHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHH-HHcCCCCC-------CCcC
Confidence 888887754211 11222334567788899999999999888753 34 3222221 22232100 0000
Q ss_pred CC--CCC-HH---HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCcc
Q 006614 577 EI--KPD-AV---SYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDEDR 634 (638)
Q Consensus 577 ~~--~p~-~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 634 (638)
.+ .+. .. .-..-+..+...|...+|.+.+..+.+. . +......+.....+.|...
T Consensus 370 ~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~-~--~~~~~~~la~lA~~~g~~~ 430 (450)
T d1qsaa1 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWD 430 (450)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHH
T ss_pred CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC-C--CHHHHHHHHHHHHHCCChh
Confidence 00 000 00 0112356677889999999988888753 2 3444455555555555543
|