Citrus Sinensis ID: 006618

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------64
MQEMELHDLSDDADYAASMQQGSSSMMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGLLYSQQEDEVL
ccccccccccccHHHHHHHHcccccccccccccccccccccccEEEEEEccEEEEcccccccccccEEEEEEEcccEEEEEEEccccccccccccccccccEEEcEEcccEEEEEEEccccccEEEEEEEccccccccEEEEcccHHHHHHHHHHcccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccEEEEHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
ccccHHcccccccccccHHccccccccccHHHcccccccccccEEEEEcccEEEEccccccccccEEEEEEEccccEEEEEEccccccccccccccccccEEEEEEcHHHEEEEEEcccccccEEEEEEEccccccccEEcccccHHHHHHHHHHHcEEccccccccEEEEccccHHHHHHcccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccHHHHccccHHHHHHHcccccccHHHcccccccHHHHcccccccccccccccccccccccccccccHHHHHHHccccccEccHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
mqemelhdlsddaDYAASMqqgsssmmrsdsskrssssesegaelvylkdnvtihptqfASERISGRLKLIKQGSSLFMTWipykgqnsntrlsekdrnlytiravpftevrsirrhtpaFGWQYIIVVLSsglafpplyfytgGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSslelpravsiasgsstpvsigdsptnvnlertngglghdshsisqfhgrqkqkaqdpardISIQVLEKFSLVTKFARETTSQLFRenhsngfgafekkfdsqsaldfdhkasydtetivneipvapdpvewttfldnegrvmdsnALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRerkglidkdvvrtdrsvtffdgddnpnvHLLRDILLTYSFynfdlgycqgmsdllsPILFVMEDESQSFWCFVALMERlgpnfnrdqngmhSQLFALSKLVElldnplhnyfkqndclnyfFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICagengaasippgtppslpidngllysqqedevl
MQEMELHDLSDDADYAASMQqgsssmmrsdsskrssSSESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIpykgqnsntrlsekdrnlytiravpftevrsirrHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAvsiasgsstpvsigdsptNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETivneipvapdpvEWTTFLDNegrvmdsnALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIkrqwqsispeqarrftkfrerkglidkdvvrtdrsvtffdgddnpnvHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGllysqqedevl
MQEMELHDLSDDADYAAsmqqgsssmmrsdsskrssssesegAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGLLYSQQEDEVL
********************************************LVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQN*******KDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTL*************************************************************ISIQVLEKFSLVTKFARETTSQLFR*****GFGAFE**F****ALDFDHKASYDTETIVNEIPVAPDPVEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSI*****RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGEN*****************************
****ELH*************************************LVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPY*****************TIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQ*****************************************************************************************************************************************************************FLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAG*******************************
*********SDDADYAA*************************AELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSH*****************RDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGLLYSQQEDEVL
****************************************EGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTP*SIGD*******************************AQDPARDISIQVLEKFSLVTKFARETTSQLFR*************FDSQSALDFD***************VAPDPVEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTP*******************
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MQEMELHDLSDDADYAASMQQGSSSMMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGLLYSQQEDEVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query638 2.2.26 [Sep-21-2011]
Q8TC07691 TBC1 domain family member yes no 0.738 0.681 0.364 2e-89
Q9CXF4671 TBC1 domain family member yes no 0.717 0.682 0.349 2e-87
Q8BYH7645 TBC1 domain family member no no 0.699 0.691 0.358 6e-79
Q9HA65648 TBC1 domain family member no no 0.810 0.797 0.317 1e-75
Q9UUH7743 GTPase-activating protein yes no 0.887 0.761 0.299 5e-66
P09379730 GTPase-activating protein yes no 0.863 0.754 0.283 4e-65
Q8TBP0767 TBC1 domain family member no no 0.442 0.367 0.429 2e-60
Q6BU76757 GTPase-activating protein yes no 0.876 0.738 0.259 2e-56
Q6FWI1745 GTPase-activating protein yes no 0.456 0.390 0.347 5e-52
P48365746 GTPase-activating protein yes no 0.445 0.380 0.353 3e-51
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2 Back     alignment and function desciption
 Score =  330 bits (846), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 185/507 (36%), Positives = 283/507 (55%), Gaps = 36/507 (7%)

Query: 108 FTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDAN 167
            T+++SI+++    GW Y++  L   +  P L+F+ G  +  + +++++V+L  S +D  
Sbjct: 132 LTDLKSIKQNKEGMGWSYLVFCLKDDVVLPALHFHQGDSKLLIESLEKYVVLCESPQDKR 191

Query: 168 VFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSIS 227
             LVN  +  L ++  +L                   D P    ++    GL      + 
Sbjct: 192 TLLVNCQNKSLSQSFENLL------------------DEPAYGLIQ---AGLLDRRKLLW 230

Query: 228 QFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKF-DSQS 286
             H  +K K +DP     I     FS VT +  ++        H            D+  
Sbjct: 231 AIHHWKKIK-KDPYTATMI----GFSKVTNYIFDSLRGSDPSTHQRPPSEMADFLSDAIP 285

Query: 287 ALDFDHKASYDTETI----VNEIPVAP--DPV---EWTTFLDNEGRVMDSNALRKRIFYG 337
            L  + +     E I    + E PV    +PV   EWT  +D+EGR+++ + +++ IF G
Sbjct: 286 GLKINQQEEPGFEVITRIDLGERPVVQRREPVSLEEWTKNIDSEGRILNVDNMKQMIFRG 345

Query: 338 GVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFR 397
           G+ H LR++ W FLLGY+ +DST  ER  L+  K  EY  +K QW+SIS EQ +R ++ R
Sbjct: 346 GLSHALRKQAWKFLLGYFPWDSTKEERTQLQKQKTDEYFRMKLQWKSISQEQEKRNSRLR 405

Query: 398 ERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILF 457
           + + LI+KDV RTDR+  F++G DNP + LL DIL+TY  Y+FDLGY QGMSDLLSP+L+
Sbjct: 406 DYRSLIEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMSDLLSPLLY 465

Query: 458 VMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNY 517
           VME+E  +FWCF + M+++  NF     GM +QL  LS L+ LLD+   +Y +  D    
Sbjct: 466 VMENEVDAFWCFASYMDQMHQNFEEQMQGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYL 525

Query: 518 FFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFD 577
           +FCFRW+LI+FKREF +   +RLWEV+WT     + HL +C AIL+  + +IM +   F+
Sbjct: 526 YFCFRWLLIRFKREFSFLDILRLWEVMWTELPCTNFHLLLCCAILESEKQQIMEKHYGFN 585

Query: 578 TLLKFINELSGRIDLDAILRDAEALCI 604
            +LK INELS +ID++ IL  AEA+ +
Sbjct: 586 EILKHINELSMKIDVEDILCKAEAISL 612
Acts as a GTPase activating protein for RAB7A. Does not act on RAB4, RAB5 or RAB6.
Homo sapiens (taxid: 9606)
>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1 Back     alignment and function description
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2 Back     alignment and function description
>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2 Back     alignment and function description
>sp|Q9UUH7|GYP7_SCHPO GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1 Back     alignment and function description
>sp|P09379|GYP7_YARLI GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q8TBP0|TBC16_HUMAN TBC1 domain family member 16 OS=Homo sapiens GN=TBC1D16 PE=2 SV=1 Back     alignment and function description
>sp|Q6BU76|GYP7_DEBHA GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q6FWI1|GYP7_CANGA GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1 Back     alignment and function description
>sp|P48365|GYP7_YEAST GTPase-activating protein GYP7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP7 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query638
225445585657 PREDICTED: GTPase-activating protein gyp 0.995 0.966 0.786 0.0
297738991684 unnamed protein product [Vitis vinifera] 0.995 0.928 0.755 0.0
449443057655 PREDICTED: TBC1 domain family member 15- 0.993 0.967 0.754 0.0
356548490656 PREDICTED: TBC1 domain family member 15- 0.993 0.966 0.746 0.0
356562977655 PREDICTED: TBC1 domain family member 15- 0.992 0.966 0.740 0.0
357478201666 TBC1 domain family member [Medicago trun 0.992 0.950 0.736 0.0
255572477645 conserved hypothetical protein [Ricinus 0.968 0.958 0.763 0.0
297792599674 hypothetical protein ARALYDRAFT_495330 [ 0.987 0.934 0.703 0.0
186531517673 RabGAP/TBC domain-containing protein [Ar 0.987 0.936 0.703 0.0
334188345690 RabGAP/TBC domain-containing protein [Ar 0.987 0.913 0.685 0.0
>gi|225445585|ref|XP_002285365.1| PREDICTED: GTPase-activating protein gyp7-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1051 bits (2717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/655 (78%), Positives = 575/655 (87%), Gaps = 20/655 (3%)

Query: 1   MQEMELHDLSDDADYAASMQQGSSSMMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQFA 60
           MQE ELHDLSDDADYAAS  QGS+S  RS SSKRSSSSES+GAE+VY KDNVTIHPTQ+A
Sbjct: 1   MQEAELHDLSDDADYAASQLQGSASFSRSGSSKRSSSSESDGAEIVYSKDNVTIHPTQYA 60

Query: 61  SERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPA 120
           SERISGRL+LIKQGSSLFMTWIPYKGQ SN RLSEKD++LYTIRAVPFT+VRSIRRHTP 
Sbjct: 61  SERISGRLRLIKQGSSLFMTWIPYKGQRSNPRLSEKDKSLYTIRAVPFTDVRSIRRHTPT 120

Query: 121 FGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQR 180
            GWQY+IVVLSSGLAFPPLYFY GGVREFLATIKQH  LVRS +DANVFLVNDF + LQR
Sbjct: 121 LGWQYVIVVLSSGLAFPPLYFYNGGVREFLATIKQHAFLVRSADDANVFLVNDFQDPLQR 180

Query: 181 TLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDP 240
           TLSSLELP AVS+A+G ST VS+ + P+N N E+ +GG      + SQ++GR + K  DP
Sbjct: 181 TLSSLELPMAVSVANGPSTSVSVSEPPSNENQEKADGGNFDGLGATSQYNGRHRPKIHDP 240

Query: 241 ARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTET 300
           ARD+SIQVLEKFSLVTKFAR+TTSQLFRE+H +GFG+ +++  +QS LD  HKAS D + 
Sbjct: 241 ARDLSIQVLEKFSLVTKFARDTTSQLFRESHGDGFGSNDRRHHNQSLLDSPHKASSDEQK 300

Query: 301 IVNEIPVAPDPVE--------------------WTTFLDNEGRVMDSNALRKRIFYGGVD 340
           + +EIPV  DP+E                    W TFLD+EGR+MDS ALRKRIFYGG++
Sbjct: 301 VPDEIPVPSDPLEFDKLALVWGKPRQPPLGSEEWATFLDSEGRIMDSKALRKRIFYGGIE 360

Query: 341 HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERK 400
           H LR+EVW FLLGY+AYDST AEREYL  IKKSEYE +K+QWQSISPEQA+RFTKFRERK
Sbjct: 361 HSLRKEVWTFLLGYHAYDSTSAEREYLVSIKKSEYETVKQQWQSISPEQAKRFTKFRERK 420

Query: 401 GLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME 460
           GLI+KDVVRTDRS++F+DGDDNPNV+LLRDILLTYSFYNFDLGYCQGMSDLLSPILFVM+
Sbjct: 421 GLIEKDVVRTDRSLSFYDGDDNPNVYLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMK 480

Query: 461 DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFC 520
           DE++SFWCFVALMERLGPNFNRDQNGMH+QLFA+SKLVELLD+PLHNYFKQNDCLNYFFC
Sbjct: 481 DEAESFWCFVALMERLGPNFNRDQNGMHTQLFAISKLVELLDSPLHNYFKQNDCLNYFFC 540

Query: 521 FRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLL 580
           FRWVLIQFKREFEYEKTM+LWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLL
Sbjct: 541 FRWVLIQFKREFEYEKTMKLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLL 600

Query: 581 KFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGLLYSQQED 635
           KFINELSG+IDLDA LRDAEALCICAGENGAA+IPPGTPPSLPID+GLL  QQ+D
Sbjct: 601 KFINELSGQIDLDATLRDAEALCICAGENGAANIPPGTPPSLPIDSGLLCPQQDD 655

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738991|emb|CBI28236.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449443057|ref|XP_004139297.1| PREDICTED: TBC1 domain family member 15-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356548490|ref|XP_003542634.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|356562977|ref|XP_003549744.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|357478201|ref|XP_003609386.1| TBC1 domain family member [Medicago truncatula] gi|355510441|gb|AES91583.1| TBC1 domain family member [Medicago truncatula] Back     alignment and taxonomy information
>gi|255572477|ref|XP_002527173.1| conserved hypothetical protein [Ricinus communis] gi|223533438|gb|EEF35186.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297792599|ref|XP_002864184.1| hypothetical protein ARALYDRAFT_495330 [Arabidopsis lyrata subsp. lyrata] gi|297310019|gb|EFH40443.1| hypothetical protein ARALYDRAFT_495330 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|186531517|ref|NP_200071.2| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|332008854|gb|AED96237.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334188345|ref|NP_001190524.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|332008855|gb|AED96238.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query638
DICTYBASE|DDB_G0288811829 DDB_G0288811 "putative GTPase 0.457 0.352 0.506 8.3e-108
UNIPROTKB|F1NBY5667 TBC1D15 "Uncharacterized prote 0.454 0.434 0.489 1.4e-92
UNIPROTKB|F1SH24674 TBC1D15 "Uncharacterized prote 0.481 0.455 0.464 2.3e-90
UNIPROTKB|F1PGI0682 TBC1D15 "Uncharacterized prote 0.481 0.450 0.464 6e-90
UNIPROTKB|Q8TC07691 TBC1D15 "TBC1 domain family me 0.481 0.444 0.471 9.8e-90
UNIPROTKB|J9NYJ6674 TBC1D15 "Uncharacterized prote 0.481 0.455 0.464 9.8e-90
UNIPROTKB|J3KNI9682 TBC1D15 "TBC1 domain family me 0.481 0.450 0.471 1.2e-89
UNIPROTKB|F1N090675 TBC1D15 "Uncharacterized prote 0.481 0.454 0.464 1.6e-89
UNIPROTKB|F1LPD8670 Tbc1d15 "Protein Tbc1d15" [Rat 0.481 0.458 0.467 5.3e-89
MGI|MGI:1913937671 Tbc1d15 "TBC1 domain family, m 0.481 0.457 0.464 4.7e-88
DICTYBASE|DDB_G0288811 DDB_G0288811 "putative GTPase activating protein (GAP)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 808 (289.5 bits), Expect = 8.3e-108, Sum P(4) = 8.3e-108
 Identities = 153/302 (50%), Positives = 219/302 (72%)

Query:   311 PVEWTTFLDNEGRVMDSNA--LRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLR 368
             P EW ++ D+EGR+  +N   L K+IFYGG++  +R+EVW FLLG Y++DSTY+ RE ++
Sbjct:   501 PSEWYSYFDDEGRICLANQQILLKKIFYGGIEESIRQEVWPFLLGVYSFDSTYSSREVVK 560

Query:   369 CIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDR-SVTFFDGDD----NP 423
               K  +Y+ +KRQW+SIS EQ  RF+K++ RK LI KDV+RTDR    F  G+D    N 
Sbjct:   561 YEKTQQYQTVKRQWESISCEQESRFSKYQSRKLLIQKDVIRTDRLHPMFIQGEDDIDSNE 620

Query:   424 NVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVM---EDESQSFWCFVALMERLGPNF 480
             N+ L+RD+LLTYSF+NFD+GY QGMSDLLSPI+ VM     E + FWCF  LM+RL  NF
Sbjct:   621 NLRLMRDVLLTYSFFNFDIGYVQGMSDLLSPIISVMGGVSKEVECFWCFKGLMDRLESNF 680

Query:   481 NRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRL 540
             ++DQNGMH QL  LSKL++ +D  L+ + + N+  N +F F+ VLI FKREF +   + L
Sbjct:   681 HKDQNGMHHQLSTLSKLLKFIDLELYTHLEANNGGNMYFFFQSVLICFKREFPFHDVLTL 740

Query:   541 WEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAE 600
             WE+LW++Y++++L +++C++IL + RN+I+ E M FD +LK INE + R+DL+ IL DAE
Sbjct:   741 WEILWSNYMTKNLPIFMCLSILIKERNQILDENMAFDQILKLINEKANRMDLEDILVDAE 800

Query:   601 AL 602
             ++
Sbjct:   801 SM 802
GO:0032851 "positive regulation of Rab GTPase activity" evidence=IEA;ISS
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005097 "Rab GTPase activator activity" evidence=IEA;ISS
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|F1NBY5 TBC1D15 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SH24 TBC1D15 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGI0 TBC1D15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TC07 TBC1D15 "TBC1 domain family member 15" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9NYJ6 TBC1D15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J3KNI9 TBC1D15 "TBC1 domain family member 15" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1N090 TBC1D15 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1LPD8 Tbc1d15 "Protein Tbc1d15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1913937 Tbc1d15 "TBC1 domain family, member 15" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.8__1146__AT5G52580.1
annotation not avaliable (674 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query638
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 2e-54
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 4e-50
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 6e-40
pfam12068210 pfam12068, DUF3548, Domain of unknown function (DU 8e-19
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information 
 Score =  184 bits (469), Expect = 2e-54
 Identities = 76/237 (32%), Positives = 110/237 (46%), Gaps = 22/237 (9%)

Query: 335 FYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFT 394
              GV   LR  VW  LL     D             K  Y  + ++  +   +      
Sbjct: 1   VRKGVPPSLRGVVWKLLLNAQPMD---------TSADKDLYSRLLKET-APDDKSIVHQ- 49

Query: 395 KFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSP 454
                   I+KD+ RT    +FF   + P    LR +L  Y+ YN ++GYCQGM+ L +P
Sbjct: 50  --------IEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAP 101

Query: 455 ILFVMEDESQSFWCFVALMERLGPNF-NRDQNGMHSQLFALSKLVELLDNPLHNYFKQND 513
           +L VMEDE  +FWC V LMER GPNF   D +G+   L  L +LV+  D  L+ + K   
Sbjct: 102 LLLVMEDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLG 161

Query: 514 CLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIM 570
                +  RW L  F RE   E  +R+W+VL+           V +A+LK +R+ ++
Sbjct: 162 ITPSLYALRWFLTLFARELPLEIVLRIWDVLFAE--GSDFLFRVALALLKLHRDVLL 216

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|192931 pfam12068, DUF3548, Domain of unknown function (DUF3548) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 638
KOG1648813 consensus Uncharacterized conserved protein, conta 100.0
KOG2224781 consensus Uncharacterized conserved protein, conta 100.0
KOG4567370 consensus GTPase-activating protein [General funct 100.0
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
KOG2223586 consensus Uncharacterized conserved protein, conta 100.0
PF12068213 DUF3548: Domain of unknown function (DUF3548); Int 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 100.0
KOG1093725 consensus Predicted protein kinase (contains TBC a 99.96
KOG2222 848 consensus Uncharacterized conserved protein, conta 99.96
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 99.95
KOG4436948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.93
KOG4347 671 consensus GTPase-activating protein VRP [General f 99.93
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.88
KOG2595395 consensus Predicted GTPase activator protein [Sign 99.87
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.8
KOG3636 669 consensus Uncharacterized conserved protein, conta 99.52
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.47
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 99.29
KOG2197 488 consensus Ypt/Rab-specific GTPase-activating prote 97.23
PF149611296 BROMI: Broad-minded protein 96.91
KOG2224781 consensus Uncharacterized conserved protein, conta 92.2
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=9.2e-56  Score=458.73  Aligned_cols=519  Identities=23%  Similarity=0.367  Sum_probs=391.1

Q ss_pred             CCCCcEEEEeeCceEEccCCcccccccceEEEEeeCCceeEEeEecCCCCCCccccccccCcceeee--eeCCCeeEEEE
Q 006618           39 ESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRA--VPFTEVRSIRR  116 (638)
Q Consensus        39 ~~~~~~llf~Ks~V~vhpt~~~~~~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~y~~~~--v~ls~I~sI~~  116 (638)
                      +.++++|||+||+|.|+|.. +++.+||||+|+|..+.++|+|+||+.|++....++.+++.||.++  |++.||++|||
T Consensus       248 qnsr~~llygkN~vlvqPk~-dmeavpgYlSLhq~ad~ltLKWtPNQLMngs~gds~~EksvyWdya~~i~~~~ivyiHc  326 (813)
T KOG1648|consen  248 QNSRTRLLYGKNHVLVQPKS-DMEAVPGYLSLHQFADGLTLKWTPNQLMNGSSGDSSGEKSVYWDYAINIEMQDIVYIHC  326 (813)
T ss_pred             hcchhhhhcccccccccCch-hhhcccceeeHhhhhccceeecChHHhhcCCCCCccccceeeecceeeeehhheEEEEe
Confidence            34788999999999999986 8999999999999999999999999999998888888999999886  88999999999


Q ss_pred             ecCCCCceEEEEEeCCCCcCCceEeecCCh-HHHHHHHHhccccccccCCCceEEEcCCc---hhhhhhhcccCCCcccc
Q 006618          117 HTPAFGWQYIIVVLSSGLAFPPLYFYTGGV-REFLATIKQHVLLVRSVEDANVFLVNDFD---NRLQRTLSSLELPRAVS  192 (638)
Q Consensus       117 ~~p~~g~~~~il~~~dG~~~P~L~F~~GG~-~~fl~~L~~~~~l~rs~~d~~l~lv~~~~---~~l~~~~~~~~~~~~~~  192 (638)
                      |+......++++|.+||++.|||+|+.||| .+||+||++ ++|+++++||++|.+.+..   +.|++- |+........
T Consensus       327 HQq~eSggtlvlVsqdGiQrpPf~fP~GgHll~FLScLEn-GLlP~gqLdPPLW~q~gKgKvfPkLRKR-S~~~s~~~~~  404 (813)
T KOG1648|consen  327 HQQDESGGTLVLVSQDGIQRPPFQFPAGGHLLAFLSCLEN-GLLPLGQLDPPLWVQTGKGKVFPKLRKR-STAVSNPAME  404 (813)
T ss_pred             ecccCCCCeEEEEecccccCCCccCCCCchhHHHHHHHHh-cCCcccccCCccccccCCcccchhhhhc-CcccCCchhh
Confidence            999766689999999999999999999999 799999997 9999999999999997732   455432 2211111111


Q ss_pred             c-cCCCCCCcccC-CCCCcccccccC---------CCCC------CCCccccccccc---ccCcCCCchhhhHHHHHhhH
Q 006618          193 I-ASGSSTPVSIG-DSPTNVNLERTN---------GGLG------HDSHSISQFHGR---QKQKAQDPARDISIQVLEKF  252 (638)
Q Consensus       193 ~-~~~~~~~~~~~-~~~~~~~~~~~~---------~~~~------~~~~~~~~~~~~---~~~~~~~p~~~~~~~~l~~~  252 (638)
                      . ....++||++. .+++..+....|         ...|      +...+++...+.   .......+. .+.+.++   
T Consensus       405 ~~~~~atDYVFRiiypg~~~E~~p~D~~d~~~~~~~p~wh~~P~~ssc~scS~s~Sp~~~~s~~sc~~~-r~pl~ll---  480 (813)
T KOG1648|consen  405 MGTGRATDYVFRIIYPGSGVEPAPEDIEDPLFGPSAPTWHSPPIHSSCNSCSLSNSPYIVDSVDSCVNF-RLPLGLL---  480 (813)
T ss_pred             cCcccccceEEEEeecCCCCCCCchhhhccccCCCCcccCCCCcccccccccCCCCCCccccccccccc-cchHHHH---
Confidence            0 11234666654 223211111100         0111      112222222111   111223333 3456665   


Q ss_pred             hhHHHHHHHHhhhhhhccCCCCCCccccc-----ccccccccCC---CCCCcchhhhcccCCCCCCHHHHHHhhccCCCC
Q 006618          253 SLVTKFARETTSQLFRENHSNGFGAFEKK-----FDSQSALDFD---HKASYDTETIVNEIPVAPDPVEWTTFLDNEGRV  324 (638)
Q Consensus       253 s~~~~~~r~~~~~~~~~~~~~g~~~~~r~-----~~~~~~~~~~---~~~~~~~~~~~~e~~~~~~~~~W~~~l~~~g~~  324 (638)
                        |.+|++|+.+|+|     |||.+||||     ||...++++.   +....+       ....+++.-|+++..+.  .
T Consensus       481 --C~sMk~QI~sRAF-----YGWLaycRHLsTvRTHLsaLV~h~~~~pD~pcd-------a~~glt~~~W~qy~~d~--t  544 (813)
T KOG1648|consen  481 --CQSMKNQIMSRAF-----YGWLAYCRHLSTVRTHLSALVDHKTLIPDDPCD-------ASAGLTEKFWKQYRADP--T  544 (813)
T ss_pred             --HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcccccCCCCCCC-------ccccccHHHHHHHhcCC--c
Confidence              9999999999999     999999999     6777777651   111111       12348899999987552  3


Q ss_pred             CChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCChHHHhhhhhhcccccccc
Q 006618          325 MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLID  404 (638)
Q Consensus       325 ~~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~~I~  404 (638)
                      +..-++.....+||..+..|+.+|+++++.+..++...+.+.........|.+....|+.             -..++|+
T Consensus       545 ~~e~~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~~-------------~~~~~~~  611 (813)
T KOG1648|consen  545 IEEWRVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLFR-------------ANLHRID  611 (813)
T ss_pred             hHHHHHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHHh-------------hheeeec
Confidence            444455555789999999999999999999888877666566666667788877666543             3367999


Q ss_pred             ccccccCCCCccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCCCc
Q 006618          405 KDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQ  484 (638)
Q Consensus       405 kDV~RT~~~~~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~aFw~f~~lm~~~~~~f~~~~  484 (638)
                      ||+.|++++..+|.+.+  +++. +++..+|...|-+-||.|||+|+.+|++..++||..+--||.-+|-+-+..|.. .
T Consensus       612 kd~e~~~~~~~~fs~~~--~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q~~~~~q-~  687 (813)
T KOG1648|consen  612 KDVERCDRNLMFFSNKD--NLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQRGKFPQ-R  687 (813)
T ss_pred             chhhhCcchheeecCCc--chhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHhcccCCC-C
Confidence            99999999999999766  4566 899999999999999999999999999999999988888998888776666664 4


Q ss_pred             chhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHHHHHhhc---CChhHHHHHHHHH
Q 006618          485 NGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHY---LSEHLHLYVCVAI  561 (638)
Q Consensus       485 ~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD~~~~~~---~~~~fll~valAi  561 (638)
                      +||...+..++ +++..+|-.. -+   +.. .-..|+||+.-|+++++.+.....|+++|...   ....|-+|+++|.
T Consensus       688 ~~~~~~l~~~r-~~~v~~~l~s-~i---d~~-qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~  761 (813)
T KOG1648|consen  688 PGMSKCLLNLR-LIQVVDPLIS-DI---DYA-QALSFRWFLLDFKRELSYECTYKVWEVIWAAQRLRITDDFAIFFGLAT  761 (813)
T ss_pred             CCccccccccc-chhhhcchhc-ch---hhh-hhcceeeeccCcccccCCCCcceeeEeeccccccccCcchhhhhhhHH
Confidence            67777777676 8888888322 11   111 12348999999999999999999999999842   2346889999998


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 006618          562 LKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCI  604 (638)
Q Consensus       562 L~~~r~~Ll~~~~dfdeilk~l~~l~~~~d~~~lL~~A~~L~~  604 (638)
                       ..+.+.++-++.+..+.++|+|+.....|-+.++..|..-..
T Consensus       762 -~~~~~~~~t~~~~~t~~i~~~~~~~e~~~c~r~~~~~~~~~~  803 (813)
T KOG1648|consen  762 -TNYHDVLITNNFDYTDMIKFFNEMAERHDCSRLLSSARTHVK  803 (813)
T ss_pred             -HhhHHHHhhcccchHHHHHHHHHHHhhhhhHHHHhcCcchHH
Confidence             666777777777899999999999888887777766654333

>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query638
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 8e-20
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 3e-16
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 6e-15
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 2e-14
3hzj_A310 Crystal Structure Of The Rabgap Domain Of The Rabga 1e-09
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 6e-08
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 2e-07
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 4e-07
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure 
Iteration: 1

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 133/290 (45%), Gaps = 45/290 (15%)
Query: 326 DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSI 385
           D + LRK   + GV  ++R   W  L GY   ++    R+     K+ EY     Q+   
Sbjct: 40  DLDELRK-CSWPGVPREVRPITWRLLSGYLPANT--ERRKLTLQRKREEYFGFIEQYYDS 96
Query: 386 SPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVH-LLRDILLTYSFYNFDLGY 444
             E+  + T +R+    I  D+ RT+  +  F     P V  +   IL  ++  +   GY
Sbjct: 97  RNEEHHQDT-YRQ----IHIDIPRTNPLIPLFQ---QPLVQEIFERILFIWAIRHPASGY 148
Query: 445 CQGMSDLLSPIL------FVMED-----------------ESQSFWCFVALMERLGPNFN 481
            QG++DL++P        +V ED                 E+ SFWC   L++ +  N+ 
Sbjct: 149 VQGINDLVTPFFVVFLSEYVEEDVENFDVTNLSQDMLRSIEADSFWCMSKLLDGIQDNYT 208
Query: 482 RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLW 541
             Q G+  ++ AL +LV  +D  +HN+F++ +     F FRW+     RE     T+RLW
Sbjct: 209 FAQPGIQKKVKALEELVSRIDEQVHNHFRRYEVEYLQFAFRWMNNLLMRELPLRCTIRLW 268
Query: 542 EVLWTHYLSE-----HLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINEL 586
           +     Y SE     H HLYVC A L ++R +I+ E+ DF  LL  +  L
Sbjct: 269 DT----YQSEPEGFSHFHLYVCAAFLIKWRKEILDEE-DFQGLLMLLQNL 313
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query638
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 5e-83
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 1e-75
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 1e-46
2qq8_A334 TBC1 domain family member 14; structural genomics 3e-42
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 1e-36
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 2e-35
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
 Score =  264 bits (675), Expect = 5e-83
 Identities = 73/319 (22%), Positives = 123/319 (38%), Gaps = 43/319 (13%)

Query: 313 EWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKK 372
           ++   L   G   D   LR+  +  G+   +R   W  L GY   +     R      K+
Sbjct: 28  KFKQLL--AGPNTDLEELRRLSW-SGIPKPVRPMTWKLLSGYLPANVD--RRPATLQRKQ 82

Query: 373 SEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDIL 432
            EY      +     ++       ++    I  D+ R                 +   IL
Sbjct: 83  KEYFAFIEHYYDSRNDEV-----HQDTYRQIHIDIPRMSPEALILQ---PKVTEIFERIL 134

Query: 433 LTYSFYNFDLGYCQGMSDLLSPILFVM------------------------EDESQSFWC 468
             ++  +   GY QG++DL++P   V                           E+ ++WC
Sbjct: 135 FIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWC 194

Query: 469 FVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQF 528
              L++ +  N+   Q G+  ++  L +LV  +D  +H +  Q++     F FRW+    
Sbjct: 195 MSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLL 254

Query: 529 KREFEYEKTMRLWEVLWTHYLS-EHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELS 587
            RE     T+RLW+   +      H HLYVC A L R+R +I+ E+ DF  LL F+  L 
Sbjct: 255 MREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEIL-EEKDFQELLLFLQNLP 313

Query: 588 GRI----DLDAILRDAEAL 602
                  D+  +L +A  L
Sbjct: 314 TAHWDDEDISLLLAEAYRL 332
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query638
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
2cay_A145 VPS36 PH domain, vacuolar protein sorting protein 95.87
2hth_B140 Vacuolar protein sorting protein 36; GLUE domain, 94.91
1pfj_A108 TFIIH basal transcription factor complex P62 subun 89.9
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
Probab=100.00  E-value=2.1e-51  Score=445.21  Aligned_cols=289  Identities=25%  Similarity=0.487  Sum_probs=252.6

Q ss_pred             CHHHHHHhhccCCCCCChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCChHH
Q 006618          310 DPVEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ  389 (638)
Q Consensus       310 ~~~~W~~~l~~~g~~~~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~  389 (638)
                      +.++|+++++.+. .++.++||+ ++++|||+.+|+.||+.|||++|.+.+  +|+.....++..|..++.+|...... 
T Consensus         7 R~~kw~~lL~~~~-~~d~~~Lr~-l~~~GIP~~lR~~vW~~LLg~~~~~~~--~~~~~l~~~~~~Y~~l~~~~~~~~~~-   81 (396)
T 1fkm_A            7 RISKFDNILKDKT-IINQQDLRQ-ISWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSDQHS-   81 (396)
T ss_dssp             HHHHHHHHHSSCS-BCCHHHHHH-HHTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSSSCS-
T ss_pred             HHHHHHHHHcCCC-CCCHHHHHH-HHHcCCCHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHHHHHHHHHHHhhccCc-
Confidence            4689999998763 489999999 567899999999999999999998764  46777788899999999987652111 


Q ss_pred             HhhhhhhccccccccccccccCCCCccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcC---------
Q 006618          390 ARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME---------  460 (638)
Q Consensus       390 ~~~~~~~~e~~~~I~kDV~RT~~~~~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~---------  460 (638)
                           ...+..++|++||.||+|++++|..  ..+++.|+|||.+|+.+||++||||||++|++|||+++.         
T Consensus        82 -----~~~~~~~qI~~Dv~RT~p~~~~F~~--~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~  154 (396)
T 1fkm_A           82 -----RDIPTWHQIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQI  154 (396)
T ss_dssp             -----THHHHHHHHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGG
T ss_pred             -----ccHHHHHHHHHHhhhhCCCcccccC--chHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhcccccc
Confidence                 1223457899999999999999986  358899999999999999999999999999999998752         


Q ss_pred             ---------C----------HHHHHHHHHHHHHhcCCCCCCCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhH
Q 006618          461 ---------D----------ESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCF  521 (638)
Q Consensus       461 ---------d----------E~~aFw~f~~lm~~~~~~f~~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~  521 (638)
                               +          |++|||||++||+++..+|..++.|+...+..++.||+..||+||+||++.++++.+|++
T Consensus       155 ~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~  234 (396)
T 1fkm_A          155 DDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAF  234 (396)
T ss_dssp             GGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHH
T ss_pred             ccccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence                     1          999999999999999899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcCCChhhHHHHHHHHHhhc---------------------------------------------------C-
Q 006618          522 RWVLIQFKREFEYEKTMRLWEVLWTHY---------------------------------------------------L-  549 (638)
Q Consensus       522 rWfl~lF~ref~~~~vlrLWD~~~~~~---------------------------------------------------~-  549 (638)
                      +||+++|+++||+++++||||++|+++                                                   . 
T Consensus       235 rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  314 (396)
T 1fkm_A          235 RWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVE  314 (396)
T ss_dssp             HHHHTTTGGGSCHHHHHHHHHHHHHHHC----------------------------------------------------
T ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999976                                                   1 


Q ss_pred             --------C-hhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHHhccCCCC
Q 006618          550 --------S-EHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR----IDLDAILRDAEALCICAGENGAA  612 (638)
Q Consensus       550 --------~-~~fll~valAiL~~~r~~Ll~~~~dfdeilk~l~~l~~~----~d~~~lL~~A~~L~~~~~e~~~~  612 (638)
                              + ..|++|+|+|||..+|+.||+  +||++++++|+++|..    .|++.+|.+|..++.....+..+
T Consensus       315 ~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~--~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~~~  388 (396)
T 1fkm_A          315 DSGKMRQSSLNEFHVFVCAAFLIKWSDQLME--MDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDATSH  388 (396)
T ss_dssp             --------CHHHHHHHHHHHHHHHTHHHHTT--CCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC-----
T ss_pred             cchhccccchHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhccHHH
Confidence                    1 379999999999999999995  5999999999999864    58999999999998887666543
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12 Back     alignment and structure
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A Back     alignment and structure
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 638
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 3e-28
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 2e-13
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 7e-06
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  109 bits (273), Expect = 3e-28
 Identities = 36/196 (18%), Positives = 71/196 (36%), Gaps = 40/196 (20%)

Query: 313 EWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKK 372
           ++   L ++  +++   LR+   + G+    R  VW  L+GY   ++   E    R  K+
Sbjct: 9   KFDNILKDK-TIINQQDLRQIS-WNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKE 66

Query: 373 SEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDIL 432
                        S +              I+ D+ RT+  +  +      N   L+ IL
Sbjct: 67  YRDSLKHTFSDQHSRD--------IPTWHQIEIDIPRTNPHIPLYQFKSVQNS--LQRIL 116

Query: 433 LTYSFYNFDLGYCQGMSDLLSPILFVM----------------------------EDESQ 464
             ++  +   GY QG++DL++P                                 + E+ 
Sbjct: 117 YLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEAD 176

Query: 465 SFWCFVALMERLGPNF 480
           +FWC   L+E++  N+
Sbjct: 177 TFWCLTKLLEQITDNY 192
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query638
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.97
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.83
d2hthb1129 Vacuolar protein sorting protein 36, VPS36 {Human 96.43
d2caya1130 Vacuolar protein sorting protein 36, VPS36 {Baker' 94.26
d2rnrb1108 TFIIH basal transcription factor complex p62 subun 93.14
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.4e-31  Score=260.05  Aligned_cols=159  Identities=23%  Similarity=0.441  Sum_probs=132.8

Q ss_pred             HHHHHHhhccCCCCCChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCChHHH
Q 006618          311 PVEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQA  390 (638)
Q Consensus       311 ~~~W~~~l~~~g~~~~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~  390 (638)
                      .++|.+++.+ ...++.++||+ ++++|||+.+|+.||++|||++|.+++.+  +....+++..|.............  
T Consensus         7 i~~~~~~l~~-~~~i~~~~lr~-l~~~Gip~~lR~~vW~~llg~~~~~~~~~--~~~~~~~~~~y~~~~~~~~~~~~~--   80 (194)
T d1fkma1           7 ISKFDNILKD-KTIINQQDLRQ-ISWNGIPKIHRPVVWKLLIGYLPVNTKRQ--EGFLQRKRKEYRDSLKHTFSDQHS--   80 (194)
T ss_dssp             HHHHHHHHSS-CSBCCHHHHHH-HHTTCCCGGGHHHHHHHHTTCSCSBGGGH--HHHHHHHHHHHHHHHHHTSSSSCS--
T ss_pred             HHHHHHHhcc-cCCCCHHHHHH-HHHcCCChHHHHHHHHHHHhhcCCchhhH--HHHHHHHhhhhhhhhhhhhhcccc--
Confidence            4689998865 56799999998 56899999999999999999999988755  556677788898887765433221  


Q ss_pred             hhhhhhccccccccccccccCCCCccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcC----------
Q 006618          391 RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME----------  460 (638)
Q Consensus       391 ~~~~~~~e~~~~I~kDV~RT~~~~~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~----------  460 (638)
                          ...+..++|++||.||+|++++|.+  .++++.|+|||.+|+.+||++||||||++|+|||++++.          
T Consensus        81 ----~~~~~~~~I~~Dv~RT~~~~~~f~~--~~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~  154 (194)
T d1fkma1          81 ----RDIPTWHQIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQID  154 (194)
T ss_dssp             ----THHHHHHHHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGG
T ss_pred             ----cchHHHHHHHHHHHhcCCccccccc--chhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhh
Confidence                2223457899999999999999985  457899999999999999999999999999999998862          


Q ss_pred             ------------------CHHHHHHHHHHHHHhcCCCCC
Q 006618          461 ------------------DESQSFWCFVALMERLGPNFN  481 (638)
Q Consensus       461 ------------------dE~~aFw~f~~lm~~~~~~f~  481 (638)
                                        .|++|||||+++|+++..+|.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~d~y~  193 (194)
T d1fkma1         155 DVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI  193 (194)
T ss_dssp             GTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS
T ss_pred             hhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhhhccCC
Confidence                              289999999999999887774
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure