Citrus Sinensis ID: 006629

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------64
MLNPQVHHQSQSIRTLCPLPKPFLRGNGQAFRPAQLNPSFKKASKIGVGFSPSNNSIKAIFNLTEKSTKVKAVITVKPIIPDPLALSSLVGALGLELVSAELDPKTGEEKPTIKGLALGVLGKDDDGNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPNGPVNLTCDSWIQPKIVDKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPEIKELARPVLGGEEHPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSASSLYSGLHALVPFLEAILIDKDLGFSSLSDIDKVFNEGIELPPELKDQPLWQKILPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLDGKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISHWLRTHCCVEPYIIAANRKLSAMHPINRLLKPHFRYTMEINAKARLILVNAGGLVETTFFPGKYSMEFSSVIYDKQWRFDHEALPKDLISR
ccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccEEEEccccEEEEEEEEEEEccccccHHHHHccccEEEEEEEEEcccccccccccccccccccccccccccEEEEEEEEEEcccccEEEEEEEEcccccEEEEEEEEEccccccEEEEEccccccccccccccEEEcccccccccccHHHHHHHHHHHHHHccccccccEEccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccHHHHHcccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHccccccccccccccccccccccccccccccEEEEEEEccccccccEEEEEccccccccccccEEEcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHccccccccHHHHcccccHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHcccccccccHHHHHcc
cccccEEEcccccccccccccccccccccccccccccHHHcccccEEEcEcccccEEEEEEEEEEccEEEEEEEEcccccccccHHHHccccEEEEEEEEcccccccccccccHHHHHHcccccccccEEEEEEEEEccccccccEEEEEEccccEEEEEEEEEcccccccEEEEEEEEEcEHHHccccEEEEccccccHHHccHHHHHHHHHHHHHHHcccccccccccccccEEcEcccccccccHHHcccccccccccccEEcccccEcccccccEcccccccccHHHccccccHHHcHHHHHHHHHHcHHHHHHHHHcccccccccHHHHHHHHHccccccccHHHHHHHccccccHHHHcEccccccEEccccccccccccHHHcHHHHHHHHHHcccccccEEccccccccccccccccccccccccccccccccccccHHHHHHcccEEEEEcHHHHHHHHHHHHccccccccEEEEEEEEcccccEEEEEEEEcccccHHHccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHcccccccHHcccHHHHcc
mlnpqvhhqsqsirtlcplpkpflrgngqafrpaqlnpsfkkaskigvgfspsnnsIKAIFNLTEKSTKVKAVItvkpiipdplaLSSLVGALGLELVsaeldpktgeekptikGLALgvlgkdddgnikykaelkipasfgdvGAILVESDQLTEMYLQDIvldglpngpvnltcdswiqpkivdkqKRIFftnksylpsqtpnglKRLRAEELNnlqgdgqgerkrheriydydvyndlalpeikelarpvlggeehpyprrcrtgrpksfadpasesrsvsiyvprdeafadiklgqfsassLYSGLHALVPFLEAILIdkdlgfsslSDIDKVFNegielppelkdqplwqKILPILFKTVsntgkevfrfdtpetvdrdkffwirneefgretlaglnpysikllsqlplkstldpeiygppesaiTTELIEQEIGGLMTVNEAIKQKKLFIIDYHDAllpyvgklrqiegstlygsralfflnpdgtlrplaieltrppldgkpqwkqvftpsrhstdSWLWTLAKAHFLVHDTGYHQLISHWLRTHCCVEPYIIAANRKLsamhpinrllkphfryTMEINAKARLILVNagglvettffpgkysmEFSSVIydkqwrfdhealpkdlisr
mlnpqvhhqsqsirtlcplPKPFLRGNGQAFRPAQLNPSFKKASkigvgfspsnNSIKAIFNLTEKSTKVKAVITVKPIIPDPLALSSLVGALGLELVSAeldpktgeekptikglalgvlgkdDDGNIKYKAElkipasfgdVGAILVESDQLTEMYLQDIVLDGLPNGPVNLTCDSWIQPKIVDKQKRIFFtnksylpsqtpnglKRLRAEELnnlqgdgqgerkrherIYDYDVYNDLALPEIKELarpvlggeehpyprrcrtgrpksfadpasesrsvsiYVPRDEAFADIKLGQFSASSLYSGLHALVPFLEAILIDKDLGFSSLSDIDKVFNEGIELPPELKDQPLWQKILPILFKtvsntgkevfrfdtpetvdrdkfFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLDGKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISHWLRTHCCVEPYIIAANRKLSAMHPINRLLKPHFRYTMEINAKARLILVNAGGLVETTFFPGKYSMEFSSVIYDKQWRFDHEALPKDLISR
MLNPQVHHQSQSIRTLCPLPKPFLRGNGQAFRPAQLNPSFKKASKIGVGFSPSNNSIKAIFNLTEKSTKVKAVITVKPIIPDPlalsslvgalglelvsaELDPKTGEEKPTIKGLALGVLGKDDDGNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPNGPVNLTCDSWIQPKIVDKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPEIKELARPVLGGEEHPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSASSLYSGLHALVPFLEAILIDKDLGFSSLSDIDKVFNEGIELPPELKDQPLWQKILPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLDGKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISHWLRTHCCVEPYIIAANRKLSAMHPINRLLKPHFRYTMEINAKARLILVNAGGLVETTFFPGKYSMEFSSVIYDKQWRFDHEALPKDLISR
**********************************************GVGF****NSIKAIFNLTEKSTKVKAVITVKPIIPDPLALSSLVGALGLELVSAEL*********TIKGLALGVLGKDDDGNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPNGPVNLTCDSWIQPKIVDKQKRIFFTNKSYL*******************************RIYDYDVYNDLALPEIKELARPVL*****************************SIYVPRDEAFADIKLGQFSASSLYSGLHALVPFLEAILIDKDLGFSSLSDIDKVFNEGIELPPELKDQPLWQKILPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLDGKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISHWLRTHCCVEPYIIAANRKLSAMHPINRLLKPHFRYTMEINAKARLILVNAGGLVETTFFPGKYSMEFSSVIYDKQWRFDHE*********
********************************************************************KVKAVITVKPIIPDPLALSSLVGALGLEL********************LGVLGKDDDGNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPNGPVNLTCDSWIQPKIVDKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPEIKELARPVLGGEEHPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSASSLYSGLHALVPFLEAILIDKDLGFSSLSDIDKVFNEGIELPPELKDQPLWQKILPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIE**********Q*KQVFTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISHWLRTHCCVEPYIIAANRKLSAMHPINRLLKPHFRYTMEINAKARLILVNAGGLVETTFFPGKYSMEFSSVIYDKQWRFDHEALPKDLISR
*************RTLCPLPKPFLRGNGQAFRPAQLNPSFKKASKIGVGFSPSNNSIKAIFNLTEKSTKVKAVITVKPIIPDPLALSSLVGALGLELVSAELDPKTGEEKPTIKGLALGVLGKDDDGNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPNGPVNLTCDSWIQPKIVDKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQ********RHERIYDYDVYNDLALPEIKELARPVLGGEEHPYPRRCRTGR************SVSIYVPRDEAFADIKLGQFSASSLYSGLHALVPFLEAILIDKDLGFSSLSDIDKVFNEGIELPPELKDQPLWQKILPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLDGKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISHWLRTHCCVEPYIIAANRKLSAMHPINRLLKPHFRYTMEINAKARLILVNAGGLVETTFFPGKYSMEFSSVIYDKQWRFDHEALPKDLISR
*L**QVHHQSQSIRTLCPLPKPFLRGNGQAF***QLN*****ASKIGVGFSPSNNSIKAIFNLTEKSTKVKAVITVKPIIPDPLALSSLVGALGLELVSAELDPKTGEEKPTIKGLALGVLGKDDDGNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPNGPVNLTCDSWIQPKIVDKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPEIKELARPVLGGEEHPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSASSLYSGLHALVPFLEAILIDKDLGFSSLSDIDKVFNEGIELPPELKDQPLWQKILPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLDGKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISHWLRTHCCVEPYIIAANRKLSAMHPINRLLKPHFRYTMEINAKARLILVNAGGLVETTFFPGKYSMEFSSVIYDKQWRFDHEALPKDLISR
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLNPQVHHQSQSIRTLCPLPKPFLRGNGQAFRPAQLNPSFKKASKIGVGFSPSNNSIKAIFNLTEKSTKVKAVITVKPIIPDPLALSSLVGALGLELVSAELDPKTGEEKPTIKGLALGVLGKDDDGNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPNGPVNLTCDSWIQPKIVDKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPEIKELARPVLGGEEHPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSASSLYSGLHALVPFLEAILIDKDLGFSSLSDIDKVFNEGIELPPELKDQPLWQKILPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLDGKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISHWLRTHCCVEPYIIAANRKLSAMHPINRLLKPHFRYTMEINAKARLILVNAGGLVETTFFPGKYSMEFSSVIYDKQWRFDHEALPKDLISR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query638 2.2.26 [Sep-21-2011]
O24370 899 Linoleate 13S-lipoxygenas N/A no 0.992 0.704 0.553 0.0
P38419 924 Lipoxygenase 7, chloropla yes no 0.882 0.609 0.536 1e-175
P93184 936 Lipoxygenase 2.1, chlorop N/A no 0.888 0.605 0.536 1e-172
Q8GSM2 896 Lipoxygenase 2.3, chlorop N/A no 0.830 0.591 0.533 1e-171
Q84YK8 941 Probable lipoxygenase 8, no no 0.862 0.584 0.538 1e-171
P38418 896 Lipoxygenase 2, chloropla yes no 0.838 0.597 0.528 1e-167
Q8GSM3 932 Lipoxygenase 2.2, chlorop N/A no 0.844 0.578 0.520 1e-157
Q7XV13 899 Putative lipoxygenase 5 O no no 0.862 0.611 0.478 1e-149
Q8H016 918 Probable lipoxygenase 6 O no no 0.855 0.594 0.471 1e-141
Q9FNX8 926 Lipoxygenase 4, chloropla no no 0.887 0.611 0.441 1e-141
>sp|O24370|LOX21_SOLTU Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum GN=LOX2.1 PE=1 SV=1 Back     alignment and function desciption
 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/652 (55%), Positives = 474/652 (72%), Gaps = 19/652 (2%)

Query: 1   MLNPQVHHQSQSIRTLCPL--PKPFLRGNGQAFRPAQLNPSFKKASKIGVGFSPSNN--- 55
           ML PQ+   SQS + L P     P       +F    LN +F+   K       + N   
Sbjct: 1   MLKPQLQQSSQSTKALIPSWNTNPLFLA---SFPINILNKNFRLKKKNNFRVHHNYNGAS 57

Query: 56  SIKAIFNLTEKSTKVKAVITVKPIIPDPLA-----LSSLVG-ALGLELVSAELDPKTGEE 109
           + KA+ + TEK+T VKAV+TV+  +   L+     +  L+G +L L +V+AELD KTG E
Sbjct: 58  TTKAVLSSTEKATGVKAVVTVQKQVNLNLSRGLDDIGDLLGKSLLLWIVAAELDHKTGIE 117

Query: 110 KPTIKGLALGVLGKDDDGNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN 169
           KP I+  A    G+D DG+  Y+A+  IP  FG+VGAIL+E++   EMY+++IV+DG  +
Sbjct: 118 KPGIRAYAH--RGRDVDGDTHYEADFVIPQDFGEVGAILIENEHHKEMYVKNIVIDGFVH 175

Query: 170 GPVNLTCDSWIQPKIVDKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRH 229
           G V +TC+SW+  K  +  KRIFFTNKSYLPSQTP+G+ RLR EEL  L+GDG GERK  
Sbjct: 176 GKVEITCNSWVHSKFDNPDKRIFFTNKSYLPSQTPSGVSRLREEELVTLRGDGIGERKVF 235

Query: 230 ERIYDYDVYNDLALPEIK--ELARPVLGGEEHPYPRRCRTGRPKSFADPASESRSVSIYV 287
           ERIYDYDVYNDL   +    +  RPVLGG+E PYPRRC+TGRP+S  DP SE+RS  +YV
Sbjct: 236 ERIYDYDVYNDLGEADSNNDDAKRPVLGGKELPYPRRCKTGRPRSKKDPLSETRSTFVYV 295

Query: 288 PRDEAFADIKLGQFSASSLYSGLHALVPFLEAILIDKDLGFSSLSDIDKVFNEGIELPPE 347
           PRDEAF+++K   FS +++YS LHA+VP LE+++ D +LGF     ID +FN G++LP  
Sbjct: 296 PRDEAFSEVKSVAFSGNTVYSVLHAVVPALESVVTDPNLGFPHFPAIDSLFNVGVDLPGL 355

Query: 348 LKDQPLWQKILPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSI 407
              +     ++P L K +S+T K+V  F++P+ V RDKF W R+ EF R+TLAGLNPYSI
Sbjct: 356 GDKKSGLFNVVPRLIKAISDTRKDVLLFESPQLVQRDKFSWFRDVEFARQTLAGLNPYSI 415

Query: 408 KLLSQLPLKSTLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPY 467
           +L+++ PL+S LDP++YGPPES IT ELIE+EIG  MTV +A++QKKLFI+DYHD LLPY
Sbjct: 416 RLVTEWPLRSKLDPKVYGPPESEITKELIEKEIGNYMTVEQAVQQKKLFILDYHDLLLPY 475

Query: 468 VGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLDGKPQWKQVFTPSR-HSTDSW 526
           V K+ +++GS LYGSR +FFL P GTL+PLAIELTRPP+D KPQWK+V++P+  ++T +W
Sbjct: 476 VNKVNELKGSMLYGSRTIFFLTPQGTLKPLAIELTRPPVDDKPQWKEVYSPNDWNATGAW 535

Query: 527 LWTLAKAHFLVHDTGYHQLISHWLRTHCCVEPYIIAANRKLSAMHPINRLLKPHFRYTME 586
           LW LAKAH L HD+GYHQL+SHWLRTHCC EPYIIA+NR+LSAMHPI RLL PHFRYTME
Sbjct: 536 LWKLAKAHVLSHDSGYHQLVSHWLRTHCCTEPYIIASNRQLSAMHPIYRLLHPHFRYTME 595

Query: 587 INAKARLILVNAGGLVETTFFPGKYSMEFSSVIYDKQWRFDHEALPKDLISR 638
           INA AR  L+NA G++E++FFPGKY++E SS+ Y  +WRFD EALP++LISR
Sbjct: 596 INALAREALINANGVIESSFFPGKYAIELSSIAYGAEWRFDQEALPQNLISR 647
Plant lipoxygenase involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence. May not be involved in the bulk production of jasmonate upon wounding. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure. Linolenic acid is the preferred substrate, before linoleic and arachidonic acids. Has also some activity with phosphatidylglycerol, but not with galactolipids.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: .EC: 1EC: 2
>sp|P38419|LOXC1_ORYSJ Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2 Back     alignment and function description
>sp|P93184|LOX21_HORVU Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1 Back     alignment and function description
>sp|Q8GSM2|LOX23_HORVU Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1 Back     alignment and function description
>sp|Q84YK8|LOXC2_ORYSJ Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1 Back     alignment and function description
>sp|P38418|LOX2_ARATH Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1 Back     alignment and function description
>sp|Q8GSM3|LOX22_HORVU Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1 Back     alignment and function description
>sp|Q7XV13|LOX5_ORYSJ Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2 Back     alignment and function description
>sp|Q8H016|LOX6_ORYSJ Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2 Back     alignment and function description
>sp|Q9FNX8|LOX4_ARATH Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query638
71999169 898 lipoxygenase LOX1 [Populus deltoides] 0.992 0.704 0.609 0.0
224053392 897 predicted protein [Populus trichocarpa] 0.990 0.704 0.602 0.0
71999171 903 lipoxygenase LOX2 [Populus deltoides] 0.984 0.695 0.588 0.0
255544764 900 lipoxygenase, putative [Ricinus communis 0.984 0.697 0.601 0.0
213876486 900 lipoxygenase [Camellia sinensis] 0.984 0.697 0.577 0.0
229554825 901 lipoxygenase [Camellia sinensis] 0.993 0.703 0.591 0.0
18461098 895 lipoxygenase [Citrus jambhiri] 0.976 0.696 0.592 0.0
308943877 901 lipoxygenase [Camellia sinensis] 0.993 0.703 0.589 0.0
312837045 889 lipoxygenase [Vitis hybrid cultivar] 0.987 0.708 0.582 0.0
225435556 901 PREDICTED: linoleate 13S-lipoxygenase 2- 0.990 0.701 0.580 0.0
>gi|71999169|gb|AAZ57444.1| lipoxygenase LOX1 [Populus deltoides] Back     alignment and taxonomy information
 Score =  820 bits (2118), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/651 (60%), Positives = 500/651 (76%), Gaps = 18/651 (2%)

Query: 1   MLNPQVHHQSQSIRTLCPLPKPFLRGNGQAFRPA-QLNPSFKKASKIGVGFSPSNNSIKA 59
           ML PQ+H    S +    LPKPF+ G+G A  P    + S K   K+ VG+   + SIK+
Sbjct: 1   MLKPQLHQSQLSTKNPFLLPKPFIHGSGHASFPVYSRSLSTKANKKVRVGYK--HGSIKS 58

Query: 60  IFNLTEKSTKVKAVITVKPIIPDPLA----------LSSLVG-ALGLELVSAELDPKTGE 108
           I ++T++ST +KAV+TVK  + D              + L G  L LELVSAELDPKTG 
Sbjct: 59  IASVTQQSTDIKAVVTVKETVVDFWTEIGIERGLDDFTDLFGKTLLLELVSAELDPKTGL 118

Query: 109 EKPTIKGLALGVLGKDDDGNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLP 168
           EKP+I+  A  +  + +D  IKY+A+  +P  FG+VGAI VE++   EMYL D+VLDG P
Sbjct: 119 EKPSIRKYAHKIDHEGED--IKYEADFVVPPDFGEVGAIFVENEHHKEMYLHDVVLDGFP 176

Query: 169 NGPVNLTCDSWIQPKIVDKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKR 228
            GPV++TCDSWI PK  +K+KR+FFTNKSYLPS+TPNGL +LR EEL  L+G+  GERK+
Sbjct: 177 TGPVHVTCDSWIHPKFDNKKKRLFFTNKSYLPSETPNGLTKLRKEELETLRGNDSGERKK 236

Query: 229 HERIYDYDVYNDLALPEIK-ELARPVLGGEEHPYPRRCRTGRPKSFADPASESRSVSIYV 287
            ERIYDYDVYNDL  P+   E ARPVLGG+EHPYPRRCRTGRP++ +DP +E+RS S YV
Sbjct: 237 GERIYDYDVYNDLGNPDSDPETARPVLGGQEHPYPRRCRTGRPRTESDPLTETRSSSFYV 296

Query: 288 PRDEAFADIKLGQFSASSLYSGLHALVPFLEAILIDKDLGFSSLSDIDKVFNEGIELPPE 347
           PRDE F++IK+G FSA +L S LHALVP L   ++D DLGF   S ID +FNEGI LPP 
Sbjct: 297 PRDEEFSEIKMGTFSARTLKSVLHALVPSLSTAIVDSDLGFPFFSSIDALFNEGINLPP- 355

Query: 348 LKDQPLWQKILPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSI 407
           LK Q  W+ +LP LF+ +++  K++ +F+TPET++RD+FFW R+EEF R+TL+GLNP SI
Sbjct: 356 LKKQGFWKDLLPNLFRAITDGTKDILKFETPETMERDRFFWFRDEEFARQTLSGLNPCSI 415

Query: 408 KLLSQLPLKSTLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPY 467
           K++++ PL+S LDPEIYGP ESAITTE++EQEI G MT  +A+K +KLFI+DYHD  LP+
Sbjct: 416 KMVTEWPLRSKLDPEIYGPQESAITTEMVEQEIKGFMTCGQAVKDQKLFILDYHDLFLPF 475

Query: 468 VGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLDGKPQWKQVFTPSRHSTDSWL 527
           V K+R+++G+TLYGSR LFFL  +GTLRPLAIELTRPP+DGKPQWKQVF P+ HSTD WL
Sbjct: 476 VSKIRELKGTTLYGSRTLFFLTHEGTLRPLAIELTRPPMDGKPQWKQVFRPTWHSTDVWL 535

Query: 528 WTLAKAHFLVHDTGYHQLISHWLRTHCCVEPYIIAANRKLSAMHPINRLLKPHFRYTMEI 587
           W LAKAH L H++GYHQLISHWLRTHCC EPYIIAA+R+LS MHPI RLL PHFRYTMEI
Sbjct: 536 WRLAKAHVLAHESGYHQLISHWLRTHCCTEPYIIAAHRQLSEMHPIYRLLHPHFRYTMEI 595

Query: 588 NAKARLILVNAGGLVETTFFPGKYSMEFSSVIYDKQWRFDHEALPKDLISR 638
           NA AR  L++A G++ET+FFPGKYSME SSV+YD++WRFD+EALPKDLI+R
Sbjct: 596 NALARQYLISAKGVIETSFFPGKYSMELSSVVYDQEWRFDYEALPKDLINR 646

Source: Populus deltoides

Species: Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224053392|ref|XP_002297796.1| predicted protein [Populus trichocarpa] gi|222845054|gb|EEE82601.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|71999171|gb|AAZ57445.1| lipoxygenase LOX2 [Populus deltoides] Back     alignment and taxonomy information
>gi|255544764|ref|XP_002513443.1| lipoxygenase, putative [Ricinus communis] gi|223547351|gb|EEF48846.1| lipoxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|213876486|gb|ACJ54281.1| lipoxygenase [Camellia sinensis] Back     alignment and taxonomy information
>gi|229554825|gb|ACQ76787.1| lipoxygenase [Camellia sinensis] Back     alignment and taxonomy information
>gi|18461098|dbj|BAB84352.1| lipoxygenase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|308943877|gb|ADO51752.1| lipoxygenase [Camellia sinensis] Back     alignment and taxonomy information
>gi|312837045|dbj|BAJ34928.1| lipoxygenase [Vitis hybrid cultivar] Back     alignment and taxonomy information
>gi|225435556|ref|XP_002285574.1| PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic [Vitis vinifera] gi|297746381|emb|CBI16437.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query638
UNIPROTKB|P38419 924 CM-LOX1 "Lipoxygenase 7, chlor 0.840 0.580 0.545 6.8e-159
TAIR|locus:2096915 896 LOX2 "lipoxygenase 2" [Arabido 0.829 0.590 0.533 5.1e-154
TAIR|locus:2030215 926 LOX4 "lipoxygenase 4" [Arabido 0.835 0.575 0.456 5.7e-130
TAIR|locus:2008808 917 LOX6 "lipoxygenase 6" [Arabido 0.838 0.583 0.457 3.6e-128
TAIR|locus:2018848 919 LOX3 "lipoxygenase 3" [Arabido 0.836 0.581 0.446 4.2e-127
TAIR|locus:2011030 859 LOX1 "lipoxygenase 1" [Arabido 0.791 0.587 0.456 3.5e-114
TAIR|locus:2087837 886 LOX5 [Arabidopsis thaliana (ta 0.774 0.557 0.443 5.5e-109
UNIPROTKB|P29250 870 LOX1.1 "Linoleate 9S-lipoxygen 0.768 0.563 0.427 5.6e-100
UNIPROTKB|H9L001 681 Gga.6903 "Uncharacterized prot 0.263 0.246 0.366 5.7e-21
ZFIN|ZDB-GENE-060623-19 676 zgc:136911 "zgc:136911" [Danio 0.263 0.248 0.363 3.2e-18
UNIPROTKB|P38419 CM-LOX1 "Lipoxygenase 7, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 1548 (550.0 bits), Expect = 6.8e-159, P = 6.8e-159
 Identities = 301/552 (54%), Positives = 396/552 (71%)

Query:   101 ELDPKTGEEKPTIKGLALGVLGKDDDGNIKYKAELKIPASFGDVGAILVESDQLTEMYLQ 160
             ELD KTG+EK T++  A  V   DD   + Y+A+  +P+ FG +GAI+V ++   EM+L+
Sbjct:   122 ELDAKTGKEKATVRSYAHNV-DDDDHSVVTYEADFDVPSGFGPIGAIIVTNELRQEMFLE 180

Query:   161 DIVL---DGLPNGPV-NLTCDSWIQPKIVDKQ----KRIFFTNKSYLPSQTPNGLKRLRA 212
             DI L   DG  N  V  + C+SW+QPK V  +    KRIFF NK+YLP QTP GL+  R 
Sbjct:   181 DINLTASDGAGNSTVLPIRCNSWVQPKSVGDEGTPSKRIFFANKTYLPGQTPAGLRSYRK 240

Query:   213 EELNNLQGDGQGERKRHERIYDYDVYNDLALPEIK-ELARPVLGG-EEHPYPRRCRTGRP 270
              +L   +GDG GER+  +R+YDYDVYNDL  P+   +LARPVLGG ++ PYPRRCRTGRP
Sbjct:   241 NDLQQKRGDGTGEREADDRVYDYDVYNDLGNPDSNGDLARPVLGGNKQFPYPRRCRTGRP 300

Query:   271 KSFADPASESRSVSIYVPRDEAFADIKLGQFSASSLYSGLHALVPFLEAILIDK---DLG 327
              S  DP SE+R  ++YVPRDE F+  K   F   ++ S L A VP  +++L+DK   +L 
Sbjct:   301 PSKKDPKSETRKGNVYVPRDEEFSPEKEDYFLRKTVGSVLQAAVPAAQSLLLDKLKWNLP 360

Query:   328 FSSLSDIDKVFNEGIELPPELKDQPLWQKILPILFKTVSNTGKE-VFRFDTPETVDRDKF 386
             F S   IDK+F +G+ELP   K   L + ++P L + + +T  E + RF+TP  + +DKF
Sbjct:   361 FPSFFVIDKLFEDGVELPGVDKLNFL-ESVVPRLLEHLRDTPAEKILRFETPANIQKDKF 419

Query:   387 FWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIEQEIGGLMTV 446
              W+R+EEF RETLAG+NPY+I+L+ + PLKS LDP +YGP ESAIT +L+E+++  +MTV
Sbjct:   420 AWLRDEEFARETLAGINPYAIELVREFPLKSKLDPAVYGPAESAITADLLEEQMRRVMTV 479

Query:   447 NEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPL 506
              EAI QK+LF++D+HD  LPYV K+R ++ +T+YGSR +FFL  DGTL+ LAIELTRP  
Sbjct:   480 EEAISQKRLFMLDFHDLFLPYVHKIRSLDHTTMYGSRTVFFLTDDGTLQLLAIELTRPAS 539

Query:   507 DGKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISHWLRTHCCVEPYIIAANRK 566
               +PQW+QVFTPS  +T SWLW +AKAH   HD G+H+LI+HWLRTHC VEPYIIAANR+
Sbjct:   540 PSQPQWRQVFTPSTDATMSWLWRMAKAHVRAHDAGHHELITHWLRTHCAVEPYIIAANRQ 599

Query:   567 LSAMHPINRLLKPHFRYTMEINAKARLILVNAGGLVETTFFPGKYSMEFSSVIYDKQWRF 626
             LS MHPI +LL+PHFRYTM INA+AR  L++AGG++E +F P KYSME SSV YDK WRF
Sbjct:   600 LSEMHPIYQLLRPHFRYTMRINARARSALISAGGIIERSFSPQKYSMELSSVAYDKLWRF 659

Query:   627 DHEALPKDLISR 638
             D EALP DL+ R
Sbjct:   660 DTEALPADLVRR 671
GO:0009607 "response to biotic stimulus" evidence=ISS;IMP
GO:0009611 "response to wounding" evidence=ISS;IMP
GO:0016166 "phytoene dehydrogenase activity" evidence=ISS;IDA
GO:0051707 "response to other organism" evidence=ISS;IDA
TAIR|locus:2096915 LOX2 "lipoxygenase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030215 LOX4 "lipoxygenase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008808 LOX6 "lipoxygenase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018848 LOX3 "lipoxygenase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011030 LOX1 "lipoxygenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087837 LOX5 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P29250 LOX1.1 "Linoleate 9S-lipoxygenase 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|H9L001 Gga.6903 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060623-19 zgc:136911 "zgc:136911" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P38419LOXC1_ORYSJ1, ., 1, 3, ., 1, 1, ., 1, 20.53620.88240.6093yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.13.11LOW CONFIDENCE prediction!
3rd Layer1.13.11.120.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_I000375
hypothetical protein; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding (By similarity) (897 aa)
(Populus trichocarpa)
Predicted Functional Partners:
CYP74A1
cytochrome P450 allene oxide synthase (EC-4.2.1.92) (526 aa)
     •• 0.902
gw1.XVIII.245.1
SubName- Full=Putative uncharacterized protein; (138 aa)
     •  0.899
gw1.XVI.1394.1
hypothetical protein (823 aa)
     •  0.899
gw1.40.286.1
phospholipase A1 (EC-3.1.1.32) (357 aa)
     •  0.899
fgenesh4_pg.C_LG_II001255
phospholipase A1 (EC-3.1.1.32) (367 aa)
     •  0.899
eugene3.00060391
hypothetical protein (856 aa)
     •  0.899
CYP74B7
cytochrome P450 fatty acid hydroperoxide lyase (492 aa)
     •  0.899
estExt_fgenesh4_pg.C_LG_VIII0936
SubName- Full=Putative uncharacterized protein; (642 aa)
     •  0.899
grail3.0064002701
SubName- Full=Putative uncharacterized protein; (382 aa)
      • 0.502

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query638
PLN02305 918 PLN02305, PLN02305, lipoxygenase 0.0
PLN02264 919 PLN02264, PLN02264, lipoxygenase 0.0
PLN02337 866 PLN02337, PLN02337, lipoxygenase 0.0
pfam00305 667 pfam00305, Lipoxygenase, Lipoxygenase 0.0
cd01751137 cd01751, PLAT_LH2, PLAT/ LH2 domain of plant lipox 8e-35
smart00308105 smart00308, LH2, Lipoxygenase homology 2 (beta bar 2e-12
pfam01477115 pfam01477, PLAT, PLAT/LH2 domain 3e-08
>gnl|CDD|215174 PLN02305, PLN02305, lipoxygenase Back     alignment and domain information 
 Score =  596 bits (1539), Expect = 0.0
 Identities = 288/622 (46%), Positives = 390/622 (62%), Gaps = 27/622 (4%)

Query: 36  LNPSFKKA---SKIGVGFSPSNNSIKAIFNLTEKSTKVKAVITVKPIIPDPLA------L 86
           +  S  ++   S  G    PS+ S  A          V+AVIT++  I + +        
Sbjct: 53  VEESGGESANKSVDGSSLLPSSRSKYA------GGIDVRAVITIRKKIKEKITEKFEDQW 106

Query: 87  SSLVGALG----LELVSAELDPKTGEEKPTIKGLALGVLGK--DDDGNIKYKAELKIPAS 140
              +  +G    ++LVS E+DP TG  K +++    G L K  +D   ++Y A+  +P  
Sbjct: 107 EYFMNGIGQGILIQLVSEEIDPVTGSGK-SVESSVRGWLPKPSNDPHIVEYAADFTVPFD 165

Query: 141 FGDVGAILVESDQLTEMYLQDIVLDGLPNGPVNLTCDSWIQPKIVDKQKRIFFTNKSYLP 200
           FG  GA+LV +    E YL +IV+ G  +GP+    ++WI  +  + + RI F N++YLP
Sbjct: 166 FGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDNPESRIIFRNQAYLP 225

Query: 201 SQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPEIKE-LARPVLGGEEH 259
           SQTP G+K LR E+L +L+G+G+GERK H+RIYDY  YNDL  P+  E LARPVLGGEE 
Sbjct: 226 SQTPPGIKDLRREDLLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEW 285

Query: 260 PYPRRCRTGRPKSFADPASESRSVS---IYVPRDEAFADIKLGQFSASSLYSGLHALVPF 316
           PYPRRCRTGRP +  DP  ESR      +YVPRDE F +IK   FSA  L + LH L+P 
Sbjct: 286 PYPRRCRTGRPPTKKDPLCESRIEKPHPVYVPRDETFEEIKRNTFSAGRLKALLHNLIPS 345

Query: 317 LEAILIDKDLGFSSLSDIDKVFNEGIELPPELKDQPLWQKILPILFKTVSNTGKEVFRFD 376
           + A L   D+ F+  SDIDK++N+GI L  E          L    K V +  + + ++D
Sbjct: 346 IAAALSSSDIPFTCFSDIDKLYNDGILLKTEEPKDIGLNPFLGNFMKQVLSVSERLLKYD 405

Query: 377 TPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELI 436
            P  + RD+F W+R+ EF R+ LAG+NP +I++L + P+ S LDP +YGPPESA+T ELI
Sbjct: 406 IPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELI 465

Query: 437 EQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRP 496
           E+E+ G MTV +AI++K+LFI+DYHD LLP++ K+  +     Y SR +FF +  G LRP
Sbjct: 466 ERELEG-MTVEKAIEEKRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRP 524

Query: 497 LAIELTRPPLDGKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISHWLRTHCCV 556
           +AIEL+ PP    P  K V+T    +T  W+W LAKAH   +D G HQL++HWLRTH C+
Sbjct: 525 IAIELSLPPTPSSPGNKFVYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLRTHACM 584

Query: 557 EPYIIAANRKLSAMHPINRLLKPHFRYTMEINAKARLILVNAGGLVETTFFPGKYSMEFS 616
           EPYIIA +R+LSAMHPI +LL PH RYT+EINA AR  L+N GG++E  F PGKY+ME S
Sbjct: 585 EPYIIATHRQLSAMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEACFSPGKYAMELS 644

Query: 617 SVIYDKQWRFDHEALPKDLISR 638
           S  Y   WRFD EALP DLI R
Sbjct: 645 SAAYKSMWRFDMEALPADLIRR 666

Length = 918
>gnl|CDD|215148 PLN02264, PLN02264, lipoxygenase Back     alignment and domain information
>gnl|CDD|215193 PLN02337, PLN02337, lipoxygenase Back     alignment and domain information
>gnl|CDD|215847 pfam00305, Lipoxygenase, Lipoxygenase Back     alignment and domain information
>gnl|CDD|238849 cd01751, PLAT_LH2, PLAT/ LH2 domain of plant lipoxygenase related proteins Back     alignment and domain information
>gnl|CDD|214608 smart00308, LH2, Lipoxygenase homology 2 (beta barrel) domain Back     alignment and domain information
>gnl|CDD|216521 pfam01477, PLAT, PLAT/LH2 domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 638
PLN02305 918 lipoxygenase 100.0
PLN02264 919 lipoxygenase 100.0
PLN02337 866 lipoxygenase 100.0
PF00305 667 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Li 100.0
cd01751137 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase re 100.0
smart00308105 LH2 Lipoxygenase homology 2 (beta barrel) domain. 99.24
PF01477113 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxyg 98.89
cd00113116 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin 98.64
cd02899109 PLAT_SR Scavenger receptor protein. A subfamily of 98.23
cd01753113 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a u 97.87
cd01756120 PLAT_repeat PLAT/LH2 domain repeats of family of p 97.77
cd01757114 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 inter 97.68
cd01752120 PLAT_polycystin PLAT/LH2 domain of polycystin-1 li 97.64
cd01754129 PLAT_plant_stress PLAT/LH2 domain of plant-specifi 97.57
>PLN02305 lipoxygenase Back     alignment and domain information 
Probab=100.00  E-value=2e-184  Score=1551.24  Aligned_cols=573  Identities=48%  Similarity=0.880  Sum_probs=535.3

Q ss_pred             ceeeEEEeeecc-eeeeEEEEecccCCCcc-ccccccc-cEEEEEEeeecCCCCCCcc---cccccccccCCCCCCCCce
Q 006629           56 SIKAIFNLTEKS-TKVKAVITVKPIIPDPL-ALSSLVG-ALGLELVSAELDPKTGEEK---PTIKGLALGVLGKDDDGNI  129 (638)
Q Consensus        56 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~g-~v~lqlvs~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  129 (638)
                      ++||+|++|+++ ++++++.+   +   .+ +++|++| +|+|||||++++|+||+||   ++|++|+++ ... +++++
T Consensus        83 ~i~~~v~~~~~~~~~~~~~~~---~---~~d~~~~~~g~~v~lqLvS~~~~~~~g~gk~~~~~l~~~~~~-~~~-~~~~~  154 (918)
T PLN02305         83 DVRAVITIRKKIKEKITEKFE---D---QWEYFMNGIGQGILIQLVSEEIDPVTGSGKSVESSVRGWLPK-PSN-DPHIV  154 (918)
T ss_pred             eEEEEEEEEeecccchhhccc---c---hhhHHHHhhCCeEEEEEEeccccCCCCCcccccchhhccccC-CCC-CCCce
Confidence            488888888887 67776554   2   24 7999999 9999999999999998555   899999986 333 14678


Q ss_pred             EEEEEEeccCCCCCeeEEEEEeCCCCceEEeEEEEcccCCccEEEEecccccCCCCCCcceEEeeCCcccCCCCChhhHH
Q 006629          130 KYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPNGPVNLTCDSWIQPKIVDKQKRIFFTNKSYLPSQTPNGLKR  209 (638)
Q Consensus       130 ~~~v~f~~~~~fG~pgai~v~n~~~~e~fl~~i~l~~~p~g~i~F~cnsWV~~~~~~~~~riff~nkayLP~~tp~~L~~  209 (638)
                      +|+++|+||++||+||||+|+|+|++||||++|||+++|+|+|||+||||||+.++|+++||||+||+|||++||++|++
T Consensus       155 ~~~~~f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~~~~~~~RiFF~nk~ylP~~tP~~l~~  234 (918)
T PLN02305        155 EYAADFTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPGIKD  234 (918)
T ss_pred             EEEEEEeeccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccCCCCCCCceEecCCCcCcccCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCcccccCeeEecccCCCCCCCccc-ccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCCC---cC
Q 006629          210 LRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPEIK-ELARPVLGGEEHPYPRRCRTGRPKSFADPASESRSV---SI  285 (638)
Q Consensus       210 ~Re~EL~~lRg~g~g~rk~~dRiYdyd~YndlG~Pd~~-~~~RpvlGg~~~PYPRR~rTgR~~~~~dp~~esr~~---~~  285 (638)
                      |||+||++|||||+||||+||||||||+|||||+||++ +++||||||++|||||||||||+||++||.+|||..   .+
T Consensus       235 ~Re~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~Dp~~Esr~~~~~~~  314 (918)
T PLN02305        235 LRREDLLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPLCESRIEKPHPV  314 (918)
T ss_pred             HHHHHHHHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCCCCCCCcCcCCCCCCCCCCcccccccCCCCc
Confidence            99999999999999999999999999999999999999 999999999779999999999999999999999954   47


Q ss_pred             cCCCCcccchhhhcccccchHHHhhhhhhhHHHHHhhcCCCCCCCHHHHHHHhccCCCCCCCCCCchhhhhhhh-hhhhh
Q 006629          286 YVPRDEAFADIKLGQFSASSLYSGLHALVPFLEAILIDKDLGFSSLSDIDKVFNEGIELPPELKDQPLWQKILP-ILFKT  364 (638)
Q Consensus       286 yvPrDe~Fs~~K~~dF~~~~l~~~~~~~lp~l~~~~~~~~~~f~sf~di~~Ly~~g~~l~~~~~~~~~~~~~~~-~~~e~  364 (638)
                      ||||||+|+++|++||+++++|+++|.++|.|+++++.++.+|+||+||++||++|+++| ....+.+.+..+| .+.+.
T Consensus       315 YvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~-~~~~~~~~~~p~~~~~~~~  393 (918)
T PLN02305        315 YVPRDETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLK-TEEPKDIGLNPFLGNFMKQ  393 (918)
T ss_pred             CCCCCCCcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCC-chhhhhhhcCCchHHHHHH
Confidence            999999999999999999999999999999999999888999999999999999999998 3200122221132 44444


Q ss_pred             hccCCcccccccCccccccccccccccHHHHHhhhcCCCccccccccCCCCCCCCCCCcCCCCCCCCcHHHHHHHhCCcc
Q 006629          365 VSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIEQEIGGLM  444 (638)
Q Consensus       365 ~~~~~~~~l~~p~P~~i~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ldp~~yg~~~s~It~e~ie~~l~g~~  444 (638)
                      ++++++.+||||+|++|++|+++|++|+|||||+|||+||++|+||++||++|+|||++||+++|+||+|||+..|+| +
T Consensus       394 i~~~~~~~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~~s~iT~e~ve~~L~G-~  472 (918)
T PLN02305        394 VLSVSERLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELIERELEG-M  472 (918)
T ss_pred             hhhcccccccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCcCCCcCHHHHHhhcCC-C
Confidence            588899999999999999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             cHHHHHhCCcEEEEecccccccccccccCCCCceeeeeceEEeeCCCCceeeEEEEecCCCCCCCCCcceEeeCCCCCCC
Q 006629          445 TVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLDGKPQWKQVFTPSRHSTD  524 (638)
Q Consensus       445 Tl~eal~~grLFi~Dy~d~~lp~l~~in~~~g~~~YAp~~Lffl~~dG~L~PlAIqL~~~~~~~~~~~~~VfTP~d~~~~  524 (638)
                      ||+|||++|||||+||||++|||+.++|.++++++|||+||||++++|+|+||||||+++++++++.+++||||++++++
T Consensus       473 TleeAl~~~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~~~~p~~~~VftP~~d~~~  552 (918)
T PLN02305        473 TVEKAIEEKRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTPSSPGNKFVYTHGHDATT  552 (918)
T ss_pred             cHHHHHHcCCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCCCCCCCcceeeCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999988777778899999877778


Q ss_pred             chHHHHHHHHhhhccchhhHHHHHhhccccchhHHHHHHhcccCcccchhHhcchhhhhhhHhHHHHHHhcccCCceeee
Q 006629          525 SWLWTLAKAHFLVHDTGYHQLISHWLRTHCCVEPYIIAANRKLSAMHPINRLLKPHFRYTMEINAKARLILVNAGGLVET  604 (638)
Q Consensus       525 ~~~W~LAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lAR~~LI~~gGiie~  604 (638)
                      +|.|+||||||++||++|||+|+||++||+||||||||||||||++|||||||+||||+||+||++||++|||+||+||+
T Consensus       553 ~w~W~LAK~~V~~aD~~~HQlisHlLrTHlv~EpfiIAT~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~gGiie~  632 (918)
T PLN02305        553 HWIWKLAKAHVCSNDAGVHQLVNHWLRTHACMEPYIIATHRQLSAMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEA  632 (918)
T ss_pred             chHHHHHHHHHHhccHHHHHHHHHHhhHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCChhHHHHHHHHhccccccCCCCchhhhhcC
Q 006629          605 TFFPGKYSMEFSSVIYDKQWRFDHEALPKDLISR  638 (638)
Q Consensus       605 ~f~~G~~~~elss~~Yk~~w~f~~~~LP~DL~~R  638 (638)
                      +|++|+|+|||++++|++.|+|++++||+||++|
T Consensus       633 ~fspg~~~~elss~aYk~~w~Fd~~~LP~DL~kR  666 (918)
T PLN02305        633 CFSPGKYAMELSSAAYKSMWRFDMEALPADLIRR  666 (918)
T ss_pred             eeccchhHHHHHHHHHHhcCcCccccCHHHHHHc
Confidence            9999999999999999988999999999999998

>PLN02264 lipoxygenase Back     alignment and domain information
>PLN02337 lipoxygenase Back     alignment and domain information
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1 Back     alignment and domain information
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins Back     alignment and domain information
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain Back     alignment and domain information
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1 Back     alignment and domain information
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain Back     alignment and domain information
>cd02899 PLAT_SR Scavenger receptor protein Back     alignment and domain information
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase Back     alignment and domain information
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function Back     alignment and domain information
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family Back     alignment and domain information
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins Back     alignment and domain information
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query638
2iuj_A 853 Crystal Structure Of Soybean Lipoxygenase-B Length 1e-122
1ik3_A 857 Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydrope 1e-121
1rov_A 857 Lipoxygenase-3 Treated With Cumene Hydroperoxide Le 1e-119
2iuk_A 864 Crystal Structure Of Soybean Lipoxygenase-D Length 1e-115
3bnd_A 839 Lipoxygenase-1 (Soybean), I553v Mutant Length = 839 1e-113
3pzw_A 839 Soybean Lipoxygenase-1 - Re-Refinement Length = 839 1e-112
1fgr_A 839 Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant Leng 1e-112
1y4k_A 839 Lipoxygenase-1 (Soybean) At 100k, N694g Mutant Leng 1e-112
1fgt_A 839 Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant Leng 1e-112
2sbl_B 839 The Three-Dimensional Structure Of An Arachidonic A 1e-112
1fgm_A 839 Lipoxygenase-1 (Soybean) At 100k, N694h Mutant Leng 1e-112
3bnb_A 839 Lipoxygenase-1 (Soybean) I553l Mutant Length = 839 1e-112
3bne_A 839 Lipoxygenase-1 (Soybean) I553a Mutant Length = 839 1e-112
1fgq_A 839 Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant Leng 1e-112
3bnc_A 839 Lipoxygenase-1 (Soybean) I553g Mutant Length = 839 1e-112
1fgo_A 839 Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant Leng 1e-112
3v98_A 691 S663d Stable-5-Lox Length = 691 7e-21
3v92_B 691 S663a Stable-5-Lox Length = 691 7e-21
3o8y_A 691 Stable-5-Lipoxygenase Length = 691 7e-21
3vf1_A 698 Structure Of A Calcium-Dependent 11r-Lipoxygenase S 3e-20
3dy5_A 1066 Allene Oxide Synthase 8r-Lipoxygenase From Plexaura 1e-19
3fg1_A 696 Crystal Structure Of Delta413-417:gs Lox Length = 6 2e-19
2fnq_A 699 Insights From The X-Ray Crystal Structure Of Coral 2e-19
3fg4_A 696 Crystal Structure Of Delta413-417:gs I805a Lox Leng 3e-19
3fg3_A 696 Crystal Structure Of Delta413-417:gs I805w Lox Leng 7e-19
1lox_A 662 Rabbit Reticulocyte 15-Lipoxygenase Length = 662 2e-16
2p0m_A 662 Revised Structure Of Rabbit Reticulocyte 15s-Lipoxy 2e-16
3rde_A 573 Crystal Structure Of The Catalytic Domain Of Porcin 4e-16
3d3l_A 541 The 2.6 A Crystal Structure Of The Lipoxygenase Dom 2e-12
>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B Length = 853 Back     alignment and structure 
Iteration: 1

 Score =  434 bits (1117), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/516 (45%), Positives = 321/516 (62%), Gaps = 16/516 (3%)
Query: 131 YKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN-GPVNLTCDSWIQPKIVDKQK 189
           Y A+    + FG  GA  +++    E YL+ ++L+ +PN G ++  C+SW+      K  
Sbjct: 95  YDAQFDWDSDFGIPGAFYIKNYMQNEFYLKSLILEDIPNHGTIHFICNSWVYNSKHYKTD 154
Query: 190 RIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPEIKE- 248
           RIFF N +YLPS+TP  L + R EEL N++GDG GERK  +RIYDYDVYNDL  P+  E 
Sbjct: 155 RIFFANNTYLPSETPAPLVKYREEELKNVRGDGTGERKEWDRIYDYDVYNDLGDPDKGEK 214
Query: 249 LARPVLGGEEHPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSASSLYS 308
            ARPVLGG   PYPRR RTGR K+  DP SE     +Y+PRDEAF  +K   F A  + S
Sbjct: 215 YARPVLGGSALPYPRRGRTGRGKTRKDPNSEKPGDFVYLPRDEAFGHLKSSDFLAYGIKS 274
Query: 309 GLHALVPFLEAILIDK--DLGFSSLSDIDKVFNEGIELPPELKDQPLWQKILPILFKTVS 366
               ++P L          L F + +++ K++  G+ LP           I+  LF+T  
Sbjct: 275 VAQDVLPVLTDAFDGNLLSLDFDNFAEVRKLYEGGVTLPTNFLSNITPIPIIKELFRT-- 332
Query: 367 NTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGP 426
             G++  ++  P+ +  DK  W+ +EEF RET+AGLNP  IK++ + PL S LD + YG 
Sbjct: 333 -DGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGLNPNVIKIIEEFPLSSKLDTQAYGD 391
Query: 427 PESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTL--YGSRA 484
               IT E +E  +GGL TV +AI+ KKLFI+D+HD L+PY   LR+I  +T   Y +R 
Sbjct: 392 HTCIITKEHLEPNLGGL-TVEQAIQNKKLFILDHHDYLIPY---LRKINANTTKTYATRT 447
Query: 485 LFFLNPDGTLRPLAIELTRPPLDGKPQW--KQVFTPSRHSTDSWLWTLAKAHFLVHDTGY 542
           +FFL  DGTL PLAIEL++P   G+      +V+ PS    ++++W LAKA+ +V+D  Y
Sbjct: 448 IFFLKNDGTLTPLAIELSKPHPQGEEYGPVSEVYVPSSEGVEAYIWLLAKAYVVVNDACY 507
Query: 543 HQLISHWLRTHCCVEPYIIAANRKLSAMHPINRLLKPHFRYTMEINAKARLILVNAGGLV 602
           HQ+ISHWL TH  VEP++IA NR LS +HPI +LL PH+R TM IN+ AR  LVNA G++
Sbjct: 508 HQIISHWLNTHAVVEPFVIATNRHLSVVHPIYKLLFPHYRDTMNINSLARKSLVNADGII 567
Query: 603 ETTFFPGKYSMEFSSVIYDKQWRFDHEALPKDLISR 638
           E TF  G+YS+E S+VIY K W F  +ALP DL+ R
Sbjct: 568 EKTFLWGRYSLEMSAVIY-KDWVFTDQALPNDLVKR 602
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy- 9(Z),11(E)-Octadecadienoic Acid Length = 857 Back     alignment and structure
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide Length = 857 Back     alignment and structure
>pdb|2IUK|A Chain A, Crystal Structure Of Soybean Lipoxygenase-D Length = 864 Back     alignment and structure
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant Length = 839 Back     alignment and structure
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement Length = 839 Back     alignment and structure
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant Length = 839 Back     alignment and structure
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant Length = 839 Back     alignment and structure
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant Length = 839 Back     alignment and structure
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15- Lipoxygenase Length = 839 Back     alignment and structure
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant Length = 839 Back     alignment and structure
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant Length = 839 Back     alignment and structure
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant Length = 839 Back     alignment and structure
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant Length = 839 Back     alignment and structure
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant Length = 839 Back     alignment and structure
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant Length = 839 Back     alignment and structure
>pdb|3V98|A Chain A, S663d Stable-5-Lox Length = 691 Back     alignment and structure
>pdb|3V92|B Chain B, S663a Stable-5-Lox Length = 691 Back     alignment and structure
>pdb|3O8Y|A Chain A, Stable-5-Lipoxygenase Length = 691 Back     alignment and structure
>pdb|3VF1|A Chain A, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests A Mechanism For Ca-Regulation Length = 698 Back     alignment and structure
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura Homomalla Length = 1066 Back     alignment and structure
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox Length = 696 Back     alignment and structure
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r- Lipoxygenase: Calcium Activation Via A C2-Like Domain And A Structural Basis Of Product Chirality Length = 699 Back     alignment and structure
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox Length = 696 Back     alignment and structure
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox Length = 696 Back     alignment and structure
>pdb|1LOX|A Chain A, Rabbit Reticulocyte 15-Lipoxygenase Length = 662 Back     alignment and structure
>pdb|2P0M|A Chain A, Revised Structure Of Rabbit Reticulocyte 15s-Lipoxygenase Length = 662 Back     alignment and structure
>pdb|3RDE|A Chain A, Crystal Structure Of The Catalytic Domain Of Porcine Leukocyte 12- Lipoxygenase Length = 573 Back     alignment and structure
>pdb|3D3L|A Chain A, The 2.6 A Crystal Structure Of The Lipoxygenase Domain Of Human Arachidonate 12-Lipoxygenase, 12s-Type (Casp Target) Length = 541 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query638
1f8n_A 839 Lipoxygenase-1; dioxygenase, metalloprotein, fatty 0.0
2iuk_A 864 SEED lipoxygenase; iron, dioxygenase, metal-bindin 0.0
2iuj_A 853 Lipoxygenase L-5; dioxygenase, metal-binding, oxid 0.0
3rde_A 573 Arachidonate 12-lipoxygenase, 12S-type; C-terminal 1e-83
3dy5_A 1066 Allene oxide synthase-lipoxygenase protein; fusion 6e-83
1lox_A 662 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot 2e-79
3v98_A 691 Arachidonate 5-lipoxygenase; dioxygenase, oxidored 1e-78
3fg1_A 696 Allene oxide synthase-lipoxygenase protein; arichi 2e-76
3d3l_A 541 Arachidonate 12-lipoxygenase, 12S-type; ALOX12, ir 3e-74
3vf1_A 698 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-lik 8e-74
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-10
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids, oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1 b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A 1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A* 1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ... Length = 839 Back     alignment and structure
 Score =  588 bits (1516), Expect = 0.0
 Identities = 226/595 (37%), Positives = 334/595 (56%), Gaps = 26/595 (4%)

Query: 63  LTEKSTKVKAVITVKP---IIPDPLA-----LSSLVG-ALGLELVSAELDPKTGEEKPTI 113
           +     K+K  + + P   +  +P       L++ +G ++ L+L+SA      G+ K   
Sbjct: 1   MFSAGHKIKGTVVLMPKNELEVNPDGSAVDNLNAFLGRSVSLQLISATKADAHGKGKVGK 60

Query: 114 KGLALGV---LGKDDDGNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN- 169
                G+   L     G   +    +   S G  GA  +++    E +L+ + L+ + N 
Sbjct: 61  DTFLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQ 120

Query: 170 GPVNLTCDSWIQPKIVDKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRH 229
           G +   C+SW+    + K  RIFF N +Y+PS+TP  L   R EEL +L+G+G GERK +
Sbjct: 121 GTIRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEY 180

Query: 230 ERIYDYDVYNDLALPEIK-ELARPVLGG-EEHPYPRRCRTGRPKSFADPASESRSVSIYV 287
           +RIYDYDVYNDL  P+   +LARPVLGG    PYPRR RTGR  +  DP +E +    YV
Sbjct: 181 DRIYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYV 240

Query: 288 PRDEAFADIKLGQFSASSLYSGLHALVPFLEAILIDKD--LGFSSLSDIDKVFNEGIELP 345
           PRDE    +K          S    + P  E+    K   + F S  D+  ++  GI+LP
Sbjct: 241 PRDENLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP 300

Query: 346 PELKDQPLWQKILPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPY 405
            ++         LP++ +     G+ + +F  P  V   +  W+ +EEF RE +AG+NP 
Sbjct: 301 RDVIS---TIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPC 357

Query: 406 SIKLLSQLPLKSTLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALL 465
            I+ L + P KS LDP IYG   S IT + ++ +     T++EA+  ++LF++DYHD  +
Sbjct: 358 VIRGLEEFPPKSNLDPAIYGDQSSKITADSLDLDG---YTMDEALGSRRLFMLDYHDIFM 414

Query: 466 PYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLDG--KPQWKQVFTPSRHST 523
           PYV ++ Q+  +  Y +R + FL  DGTL+P+AIEL+ P   G       QV  P++   
Sbjct: 415 PYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGV 474

Query: 524 DSWLWTLAKAHFLVHDTGYHQLISHWLRTHCCVEPYIIAANRKLSAMHPINRLLKPHFRY 583
           +S +W LAKA+ +V+D+ YHQL+SHWL TH  +EP++IA +R LS +HPI +LL PH+R 
Sbjct: 475 ESTIWLLAKAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRN 534

Query: 584 TMEINAKARLILVNAGGLVETTFFPGKYSMEFSSVIYDKQWRFDHEALPKDLISR 638
            M INA AR  L+NA G++ETTF P KYS+E SS +Y K W F  +ALP DLI R
Sbjct: 535 NMNINALARQSLINANGIIETTFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKR 588
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max} Length = 864 Back     alignment and structure
>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max} Length = 853 Back     alignment and structure
>3rde_A Arachidonate 12-lipoxygenase, 12S-type; C-terminal domain, protein-inhibitor complex, oxapentadeca-4-YNE)phenylpropanoic acid; HET: OYP; 1.89A {Sus scrofa} Length = 573 Back     alignment and structure
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla} Length = 1066 Back     alignment and structure
>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A* Length = 662 Back     alignment and structure
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B Length = 691 Back     alignment and structure
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A Length = 696 Back     alignment and structure
>3d3l_A Arachidonate 12-lipoxygenase, 12S-type; ALOX12, iron-binding protein, 12-LOX, platelet-type lipoxygenase 12, structural genomics; 2.60A {Homo sapiens} Length = 541 Back     alignment and structure
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa} Length = 698 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query638
2iuk_A 864 SEED lipoxygenase; iron, dioxygenase, metal-bindin 100.0
1f8n_A 839 Lipoxygenase-1; dioxygenase, metalloprotein, fatty 100.0
2iuj_A 853 Lipoxygenase L-5; dioxygenase, metal-binding, oxid 100.0
1lox_A 662 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot 100.0
3v98_A 691 Arachidonate 5-lipoxygenase; dioxygenase, oxidored 100.0
3fg1_A 696 Allene oxide synthase-lipoxygenase protein; arichi 100.0
3vf1_A 698 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-lik 100.0
3dy5_A 1066 Allene oxide synthase-lipoxygenase protein; fusion 100.0
3rde_A 573 Arachidonate 12-lipoxygenase, 12S-type; C-terminal 100.0
3d3l_A 541 Arachidonate 12-lipoxygenase, 12S-type; ALOX12, ir 100.0
2wxu_A370 Phospholipase C; cytolysis, hydrolase, hemolysis, 98.17
1olp_A370 Alpha-toxin; zinc phospholipase C, GAS gangrene de 98.15
3cwz_B384 RAB6IP1, RAB6-interacting protein 1; RAB small GTP 96.57
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max} Back     alignment and structure
Probab=100.00  E-value=2.9e-175  Score=1488.19  Aligned_cols=573  Identities=40%  Similarity=0.734  Sum_probs=531.4

Q ss_pred             CceeeEEEeeecc-eeeeEEEEecc------------cC----CCcc-ccccccc-cEEEEEEeeecCCCCCCcc----c
Q 006629           55 NSIKAIFNLTEKS-TKVKAVITVKP------------II----PDPL-ALSSLVG-ALGLELVSAELDPKTGEEK----P  111 (638)
Q Consensus        55 ~~~~~~~~~~~~~-~~~~~~~~~~~------------~~----~~~~-~~~~~~g-~v~lqlvs~~~~~~~~~~~----~  111 (638)
                      .++||+|++|+++ ++++++.++.+            ..    ...+ +++|++| +|+|||||++++++||+||    +
T Consensus         9 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqlvs~~~~~~~~~~k~~~~~   88 (864)
T 2iuk_A            9 QKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRNISMQLISATQTDGSGNGKVGKEV   88 (864)
T ss_dssp             CCEEEEEEEEEGGGSCHHHHTTC-----------------------CCSGGGSCSTTEEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CEEEEEEEEEecccccccccccccccccccccccccccccccccchhhhHHHhccCeEEEEEEecccCCCCCCCcCCCcc
Confidence            3499999999987 77766542211            00    1113 7899999 9999999999999999885    9


Q ss_pred             ccccccccCCCCCCCCceEEEEEEeccCCCCCeeEEEEEeCCCCceEEeEEEEcccCC-ccEEEEecccccCCCCCCcce
Q 006629          112 TIKGLALGVLGKDDDGNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN-GPVNLTCDSWIQPKIVDKQKR  190 (638)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~v~f~~~~~fG~pgai~v~n~~~~e~fl~~i~l~~~p~-g~i~F~cnsWV~~~~~~~~~r  190 (638)
                      +|++|+.+..... +++++|+|+|+||++||+||||+|+|+|++||||++|+|+++|+ |+|||+||||||+.++|+++|
T Consensus        89 ~~~~~~~~~~~~~-~~~~~~~~~f~~~~~fg~pgA~~v~n~~~~e~~l~~~~l~~~~~~~~~~f~cnswv~~~~~~~~~R  167 (864)
T 2iuk_A           89 YLEKHLPTLPTLG-ARQDAFSIFFEWDASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNR  167 (864)
T ss_dssp             ECCEEECSCSSCC-TTCEEEEEEECCCSTTCCEEEEEEEECSSSCEEEEEEEEECCSSSCCEEEEEEEEECBGGGSSSCE
T ss_pred             cccccccCCCcCC-CCcEEEEEEEEeeccCCCcceEEEEeCCCCceEEEEEEEecCCCCCcEEEecCccccCCCCCCCCc
Confidence            9999995544344 68899999999999999999999999999999999999999996 899999999999999999999


Q ss_pred             EEeeCCcccCCCCChhhHHHHHHHHHhhcCCCCCcccccCeeEecccCCCCCCCccc-ccccccCCC-CCCCCCCccCCC
Q 006629          191 IFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPEIK-ELARPVLGG-EEHPYPRRCRTG  268 (638)
Q Consensus       191 iff~nkayLP~~tp~~L~~~Re~EL~~lRg~g~g~rk~~dRiYdyd~YndlG~Pd~~-~~~RpvlGg-~~~PYPRR~rTg  268 (638)
                      |||+||+|||++||++|+++||+||++|||||+||||+||||||||||||||+||++ +  |||||| ++||||||||||
T Consensus       168 ifF~n~~ylp~~tp~~l~~~R~~el~~lrg~g~g~rk~~driydyd~yndlg~pd~~~~--rpvlggs~~~pyPrR~rtg  245 (864)
T 2iuk_A          168 IFFVNDTYLPSATPAPLLKYRKEEFEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGDP--RPILGGCSIYPYPLRVRTG  245 (864)
T ss_dssp             EEEBSCCCCTTTSCGGGHHHHHHHHHHHHCCSCSCCCTTCCCCCEECBCCSCBGGGTBC--CCCBSSSSSSCCCCEECCC
T ss_pred             eeccCCCcCcccCcHHHHHHHHHHHHHhcCCCCCcccccccchhhhhhhcCCCcccCCC--CcccCCCCCCCCCccccCC
Confidence            999999999999999999999999999999999999999999999999999999999 6  999999 899999999999


Q ss_pred             CCCCCCCCCCCCCCCcCcCCCCcccchhhhcccccchHHHhhhhhhhHHHHHhh--c-CCCCCCCHHHHHHHhccCCCCC
Q 006629          269 RPKSFADPASESRSVSIYVPRDEAFADIKLGQFSASSLYSGLHALVPFLEAILI--D-KDLGFSSLSDIDKVFNEGIELP  345 (638)
Q Consensus       269 R~~~~~dp~~esr~~~~yvPrDe~Fs~~K~~dF~~~~l~~~~~~~lp~l~~~~~--~-~~~~f~sf~di~~Ly~~g~~l~  345 (638)
                      |+|+++||.+|||.. +||||||+|+++|.+||.+++++++++.++|.|+++++  + +..+|+||+||++||++|+++|
T Consensus       246 r~~~~~dp~~e~~~~-~yvPrDe~F~~~K~~~f~~~~~k~~~~~~~p~l~~~~~~~~~~~~~f~sf~di~~ly~~g~~l~  324 (864)
T 2iuk_A          246 RERTRTDPNSEKPGE-VYVPRDENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLP  324 (864)
T ss_dssp             CCBCSSCTTSBCCCC-CCCCGGGSCCCSSGGGCHHHHHHHHHHTTHHHHHHHHHSSCSSCSSCCSHHHHHTTTSSCEECC
T ss_pred             CCCCCCCCCcccccc-CCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHhccccCc
Confidence            999999999999965 99999999999999999999999999999999999985  3 5689999999999999999998


Q ss_pred             CCCCCchhhhhh--hhhhhhhhccCCcccccccCccccccccccccccHHHHHhhhcCCCccccccccCCCCCCCCCCCc
Q 006629          346 PELKDQPLWQKI--LPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEI  423 (638)
Q Consensus       346 ~~~~~~~~~~~~--~~~~~e~~~~~~~~~l~~p~P~~i~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ldp~~  423 (638)
                       .    ...+..  ++.++++++++++.++|||+|++|++|+++|++|+|||||+|||+||++|++|++||++|+|||++
T Consensus       325 -~----~~~~~~~p~~~~~~~~~~~~e~~lk~p~P~vi~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ldp~~  399 (864)
T 2iuk_A          325 -T----DILSQISPLPALKEIFRTDGENVLQFPPPHVAKVSKSGVMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTL  399 (864)
T ss_dssp             -H----HHHHHHSSCTTTTTTCBCTTSSEEBCCCCSSCSCSSSSSSCHHHHHHHHHHSSSCSCCEECSSSSCCCCSCHHH
T ss_pred             -h----hhhcccCcHHHHHHHhhccccchhcCCCcceecccchhhhchHHHHHHHhcCCCchhhhhhhccCCcccCChhh
Confidence             3    233333  345667778888999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHHHhCCcccHHHHHhCCcEEEEecccccccccccccCCCCceeeeeceEEeeCCCCceeeEEEEecC
Q 006629          424 YGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTR  503 (638)
Q Consensus       424 yg~~~s~It~e~ie~~l~g~~Tl~eal~~grLFi~Dy~d~~lp~l~~in~~~g~~~YAp~~Lffl~~dG~L~PlAIqL~~  503 (638)
                      ||+++|+||++||+..++| +||+|||++|||||+||||++|||+.++|.++++++|||+||||++++|+|+||||||++
T Consensus       400 yg~~~s~it~e~i~~~l~g-~tl~eal~~grLFi~Dy~d~~lp~l~~in~~~~~~~YAp~~Lffl~~dG~L~PlAIqLs~  478 (864)
T 2iuk_A          400 YGDQTSTITKEQLEINMGG-VTVEEALSTQRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIELSK  478 (864)
T ss_dssp             HCCCCCCCCHHHHGGGTTT-CCHHHHHHTTCEEEEECHHHHGGGHHHHHTSTTCCCCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             cCCcccccCHHHHhhccCC-CcHHHHHhcCCEEEecchhhhccchhhcccCCCceeecceEEEEEcCCCCEeEEEEEeeC
Confidence            9999999999999999998 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC--CCcceEeeCCCCCCCchHHHHHHHHhhhccchhhHHHHHhhccccchhHHHHHHhcccCcccchhHhcchhh
Q 006629          504 PPLDGK--PQWKQVFTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISHWLRTHCCVEPYIIAANRKLSAMHPINRLLKPHF  581 (638)
Q Consensus       504 ~~~~~~--~~~~~VfTP~d~~~~~~~W~LAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHf  581 (638)
                      ++++++  +++++||||+|+++++|.|+|||+||++||+++||+|+||++||++||||+|||+||||.+|||||||.|||
T Consensus       479 p~~~~~~~~~~~~VftP~dd~~~~~~W~LAK~~v~~aD~~~HqlisHll~THlv~Epf~IAt~RqLs~~HPI~kLL~PHf  558 (864)
T 2iuk_A          479 PHPDGDNLGPESIVVLPATEGVDSTIWLLAKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHY  558 (864)
T ss_dssp             CCSSSSSSCCEEEEECCCSSSSHHHHHHHHHHHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHSCTTCHHHHHHGGGG
T ss_pred             CCCCccccCCCCCeECCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCccCchHHhhHHHH
Confidence            876554  367899999987777899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHhHHHHHHhcccCCceeeeccCCChhHHHHHHHHhccccccCCCCchhhhhcC
Q 006629          582 RYTMEINAKARLILVNAGGLVETTFFPGKYSMEFSSVIYDKQWRFDHEALPKDLISR  638 (638)
Q Consensus       582 r~Tl~IN~lAR~~LI~~gGiie~~f~~G~~~~elss~~Yk~~w~f~~~~LP~DL~~R  638 (638)
                      |+||+||++||+.|||+||++|++|++|+|+|||++++|+. |+|++++||+||++|
T Consensus       559 r~Tl~IN~~AR~~LI~~gGiie~~~~~G~~~~elss~ayk~-w~f~~~~LP~DL~~R  614 (864)
T 2iuk_A          559 RDTININGLARQSLINADGIIEKSFLPGKYSIEMSSSVYKN-WVFTHQALPADLVKR  614 (864)
T ss_dssp             TTHHHHHHHHHHHTSSTTSHHHHHSTTGGGHHHHHHHHHTT-CCGGGSSHHHHHHHT
T ss_pred             HHHHHHHHHHHHhccCCCCceeeeccCchhHHHHHHHHHcc-CCCccccCcHHHHhc
Confidence            99999999999999999999999999999999999999997 999999999999998
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids, oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1 b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A 1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A* 1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ... Back     alignment and structure
>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max} Back     alignment and structure
>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A* Back     alignment and structure
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B Back     alignment and structure
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A Back     alignment and structure
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa} Back     alignment and structure
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla} Back     alignment and structure
>3rde_A Arachidonate 12-lipoxygenase, 12S-type; C-terminal domain, protein-inhibitor complex, oxapentadeca-4-YNE)phenylpropanoic acid; HET: OYP; 1.89A {Sus scrofa} Back     alignment and structure
>3d3l_A Arachidonate 12-lipoxygenase, 12S-type; ALOX12, iron-binding protein, 12-LOX, platelet-type lipoxygenase 12, structural genomics; 2.60A {Homo sapiens} Back     alignment and structure
>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A Back     alignment and structure
>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3 Back     alignment and structure
>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14, nesca PLAT; HET: GTP; 3.20A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 638
d3bnea1 690 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal dom 0.0
d2p0ma1 551 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Ory 1e-86
d3bnea2143 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Gl 4e-30
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Length = 690 Back     information, alignment and structure

class: All alpha proteins
fold: Lipoxigenase
superfamily: Lipoxigenase
family: Plant lipoxigenases
domain: Lipoxigenase, C-terminal domain
species: Soybean (Glycine max), isozyme L1 [TaxId: 3847]

 Score =  550 bits (1419), Expect = 0.0
 Identities = 192/448 (42%), Positives = 270/448 (60%), Gaps = 17/448 (3%)

Query: 199 LPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPEI-KELARPVLGG- 256
           +PS+TP  L   R EEL +L+G+G GERK ++RIYDYDVYNDL  P+  ++LARPVLGG 
Sbjct: 1   VPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGGS 60

Query: 257 EEHPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSASSLYSGLHALVPF 316
              PYPRR RTGR  +  DP +E +    YVPRDE    +K          S    + P 
Sbjct: 61  STFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQPA 120

Query: 317 LEAILIDKD--LGFSSLSDIDKVFNEGIELPPELKDQPLWQKILPILF--KTVSNTGKEV 372
            E+    K   + F S  D+  ++  GI+LP     + +   I+P+    +     G+ +
Sbjct: 121 FESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-----RDVISTIIPLPVIKELYRTDGQHI 175

Query: 373 FRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAIT 432
            +F  P  V   +  W+ +EEF RE +AG+NP  I+ L + P KS LDP IYG   S IT
Sbjct: 176 LKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGDQSSKIT 235

Query: 433 TELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDG 492
            + ++ +     T++EA+  ++LF++DYHD  +PYV ++ Q+  +  Y +R + FL  DG
Sbjct: 236 ADSLDLD---GYTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTILFLREDG 292

Query: 493 TLRPLAIELTRPPLDG--KPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISHWL 550
           TL+P+AIEL+ P   G       QV  P++   +S +W LAKA+ +V+D+ YHQL+SHWL
Sbjct: 293 TLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMSHWL 352

Query: 551 RTHCCVEPYIIAANRKLSAMHPINRLLKPHFRYTMEINAKARLILVNAGGLVETTFFPGK 610
            TH  +EP++IA +R LS +HPI +LL PH+R  M INA AR  L+NA G+ ETTF P K
Sbjct: 353 NTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIAETTFLPSK 412

Query: 611 YSMEFSSVIYDKQWRFDHEALPKDLISR 638
           YS+E SS +Y K W F  +ALP DLI R
Sbjct: 413 YSVEMSSAVY-KNWVFTDQALPADLIKR 439
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 551 Back     information, alignment and structure
>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Length = 143 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query638
d3bnea1 690 Lipoxigenase, C-terminal domain {Soybean (Glycine 100.0
d2p0ma1 551 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [T 100.0
d3bnea2143 Plant lipoxigenase {Soybean (Glycine max), isozyme 100.0
d2p0ma2111 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [T 97.93
d1olpa2121 Alpha-toxin, C-terminal domain {Clostridium absonu 97.01
d1ca1a2121 Alpha-toxin, C-terminal domain {Clostridium perfri 96.86
d1bu8a1114 Pancreatic lipase, C-terminal domain {Rat (Rattus 92.89
d1rp1a1113 Pancreatic lipase, C-terminal domain {Dog (Canis f 92.47
d1gpla1112 Pancreatic lipase, C-terminal domain {Guinea pig ( 82.27
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Lipoxigenase
superfamily: Lipoxigenase
family: Plant lipoxigenases
domain: Lipoxigenase, C-terminal domain
species: Soybean (Glycine max), isozyme L1 [TaxId: 3847]

Probab=100.00  E-value=1.5e-140  Score=1185.92  Aligned_cols=432  Identities=44%  Similarity=0.817  Sum_probs=412.2

Q ss_pred             cCCCCChhhHHHHHHHHHhhcCCCCCcccccCeeEecccCCCCCCCccc-ccccccCCC-CCCCCCCccCCCCCCCCCCC
Q 006629          199 LPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPEIK-ELARPVLGG-EEHPYPRRCRTGRPKSFADP  276 (638)
Q Consensus       199 LP~~tp~~L~~~Re~EL~~lRg~g~g~rk~~dRiYdyd~YndlG~Pd~~-~~~RpvlGg-~~~PYPRR~rTgR~~~~~dp  276 (638)
                      ||++||++|++|||+||++|||||+||||+||||||||||||||+||++ +++|||||| ++|||||||||||+||++||
T Consensus         1 lp~~tp~~l~~~r~~el~~lrg~g~g~~~~~driydy~~yndlg~pd~~~~~~rp~lgg~~~~pyprr~rtgr~~~~~dp   80 (690)
T d3bnea1           1 VPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDP   80 (690)
T ss_dssp             CGGGSCGGGHHHHHHHHHHHHCCSCSCCCTTCCCCCEECBCSSCCTTTCGGGCCCCBSSSSSSCCCCEECCCCCBCSSCT
T ss_pred             CCccccHHHHHHHHHHHHHhCCCCCCCCCcccccccccccccCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            8999999999999999999999999999999999999999999999999 999999999 68999999999999999999


Q ss_pred             CCCCCCCcCcCCCCcccchhhhcccccchHHHhhhhhhhHHHHHhh--cCCCCCCCHHHHHHHhccCCCCCCCCCCchhh
Q 006629          277 ASESRSVSIYVPRDEAFADIKLGQFSASSLYSGLHALVPFLEAILI--DKDLGFSSLSDIDKVFNEGIELPPELKDQPLW  354 (638)
Q Consensus       277 ~~esr~~~~yvPrDe~Fs~~K~~dF~~~~l~~~~~~~lp~l~~~~~--~~~~~f~sf~di~~Ly~~g~~l~~~~~~~~~~  354 (638)
                      .+|||...+||||||+|+++|++||.++++|+++|.++|.|+++++  .+..+|+||+||++||++|+++| ..   .+.
T Consensus        81 ~~e~r~~~~yvPrde~f~~~k~~~f~~~~~~~~~~~~~p~~~~~~~~~~~~~~f~~f~~i~~ly~~g~~~~-~~---~~~  156 (690)
T d3bnea1          81 NTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-RD---VIS  156 (690)
T ss_dssp             TSBCCCSSCCCCGGGSCCCSSGGGCHHHHHHHHHHTHHHHHHHHHHTTSSCSSCCSHHHHHGGGTTCEECC-HH---HHH
T ss_pred             CcccCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhccccCc-hh---hhh
Confidence            9999999999999999999999999999999999999999999875  45679999999999999999998 32   233


Q ss_pred             hhh-hhhhhhhhccCCcccccccCccccccccccccccHHHHHhhhcCCCccccccccCCCCCCCCCCCcCCCCCCCCcH
Q 006629          355 QKI-LPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITT  433 (638)
Q Consensus       355 ~~~-~~~~~e~~~~~~~~~l~~p~P~~i~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ldp~~yg~~~s~It~  433 (638)
                      +.+ ++.+++.++++++.+||||+|++|++|+++|++|+|||||+|||+||++|+||++||++++||+++||+++++||+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~W~~D~eFarQ~LaG~NP~~Irr~~e~P~~~~l~~~~~g~~~s~it~  236 (690)
T d3bnea1         157 TIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGDQSSKITA  236 (690)
T ss_dssp             HHTTSTTGGGGCEECSSSEEECCCCGGGSSCSSGGGSHHHHHHHHHHSSSTTCCEECCSSSCCCCSCHHHHCCCCCCCCG
T ss_pred             hcccHHHHHHHhhccccceeecCCchhhhccccccccHHHHHHHHhcCCCchheeeccccCCcCCCCHHHhCchhhhhhH
Confidence            332 5678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCcccHHHHHhCCcEEEEecccccccccccccCCCCceeeeeceEEeeCCCCceeeEEEEecCCCCCCC--CC
Q 006629          434 ELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLDGK--PQ  511 (638)
Q Consensus       434 e~ie~~l~g~~Tl~eal~~grLFi~Dy~d~~lp~l~~in~~~g~~~YAp~~Lffl~~dG~L~PlAIqL~~~~~~~~--~~  511 (638)
                      ++++  ++| +||++||++|||||+||||+++|++.++|..++++.|||+||||++++|+|+||||||++++..++  ++
T Consensus       237 ~~i~--l~G-~Tl~~Al~~grLFi~Dy~dl~~~~~~~i~~~~~~~~~A~~~Lffl~~dG~L~PiAIqL~~~~~~~~~~~~  313 (690)
T d3bnea1         237 DSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAA  313 (690)
T ss_dssp             GGCC--CTT-CCHHHHHHTTCEEEEECHHHHHHHHHHHHTSTTCCCCEEEEEEEECTTSCEEEEEEEEECCCCTTCCCCC
T ss_pred             hhhc--cCc-cHHHHHHHcCCEEEEechhhhccccccccCcCCceeecchhheeECCCCCcccEEEEecCCCCCcccCCC
Confidence            9985  778 999999999999999999999999999999899999999999999999999999999999986553  67


Q ss_pred             cceEeeCCCCCCCchHHHHHHHHhhhccchhhHHHHHhhccccchhHHHHHHhcccCcccchhHhcchhhhhhhHhHHHH
Q 006629          512 WKQVFTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISHWLRTHCCVEPYIIAANRKLSAMHPINRLLKPHFRYTMEINAKA  591 (638)
Q Consensus       512 ~~~VfTP~d~~~~~~~W~LAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lA  591 (638)
                      +++||||+|+++++|.|+||||||++||+++||+|+||++||++||||||||+||||.+|||||||.||||+||+||++|
T Consensus       314 ~~~VftP~d~~~~~~~W~lAK~~v~~aD~~~HqlvsHll~THlv~Epf~IAt~RqLs~~HPI~kLL~PHfr~Tl~IN~~A  393 (690)
T d3bnea1         314 VSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALA  393 (690)
T ss_dssp             CCEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHSCTTCHHHHHHGGGGTTHHHHHHHH
T ss_pred             CCceeCCCCCCccchHHHHHHHHHHHhhHHHHHHHHhhhhhhhHHHHHHHHHHhcCCccCCHHHhcchhhhhhHHHHHHH
Confidence            89999999976668999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccCCceeeeccCCChhHHHHHHHHhccccccCCCCchhhhhcC
Q 006629          592 RLILVNAGGLVETTFFPGKYSMEFSSVIYDKQWRFDHEALPKDLISR  638 (638)
Q Consensus       592 R~~LI~~gGiie~~f~~G~~~~elss~~Yk~~w~f~~~~LP~DL~~R  638 (638)
                      |++|||+||++|++|++|+|+|||++++|++ |+|++++||+||++|
T Consensus       394 R~~LI~~gGiie~~~~~~~~~~el~~~ayk~-w~f~~~~lP~dL~~R  439 (690)
T d3bnea1         394 RQSLINANGIAETTFLPSKYSVEMSSAVYKN-WVFTDQALPADLIKR  439 (690)
T ss_dssp             HHHTSSTTSHHHHHSTTGGGHHHHHHHHHTT-CCGGGGSHHHHHHHT
T ss_pred             HHhccCCCCeeeecccCchhHHHHHHHHHhc-CcccccCCHHHHHHc
Confidence            9999999999999999999999999999998 999999999999998
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Back     information, alignment and structure
>d2p0ma2 b.12.1.1 (A:2-112) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1olpa2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain {Clostridium absonum [TaxId: 29369]} Back     information, alignment and structure
>d1ca1a2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain {Clostridium perfringens, different strains [TaxId: 1502]} Back     information, alignment and structure
>d1bu8a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1rp1a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1gpla1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Guinea pig (Cavia porcellus) [TaxId: 10141]} Back     information, alignment and structure